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PMC:1853120 / 38656-39488 JSONTXT

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Id Subject Object Predicate Lexical cue
T21888 0-2 PRP denotes We
T21889 17-24 VB denotes observe
T21890 3-6 VBD denotes did
T21891 6-8 , denotes ,
T21892 8-15 RB denotes however
T21893 15-17 , denotes ,
T21894 25-30 CD denotes three
T21895 40-47 NNS denotes defects
T21896 31-39 JJ denotes specific
T21897 48-50 IN denotes in
T21898 51-54 DT denotes the
T21899 59-68 NN denotes chromatin
T21900 55-58 NN denotes sex
T21901 69-71 IN denotes of
T21902 72-77 NN denotes Dmrt7
T21903 78-84 NN denotes mutant
T21904 90-95 NNS denotes cells
T21905 85-89 NN denotes germ
T21906 96-100 WDT denotes that
T21907 101-108 VBD denotes avoided
T21908 109-115 NN denotes arrest
T21909 116-118 IN denotes in
T21910 119-128 NN denotes pachynema
T21911 129-132 CC denotes and
T21912 133-137 VBD denotes were
T21913 138-142 JJ denotes able
T21914 143-145 TO denotes to
T21915 146-151 VB denotes enter
T21916 152-161 NN denotes diplonema
T21917 161-162 . denotes .
T21918 162-348 sentence denotes Normally cells accumulate H3-2meK9 and H3-3meK9 marks and HP1β protein on the sex chromatin as they progress to diplonema, but we observed mutant diplotene cells lacking these features.
T21919 163-171 RB denotes Normally
T21920 178-188 VBP denotes accumulate
T21921 172-177 NNS denotes cells
T21922 189-191 NN denotes H3
T21923 192-197 NN denotes 2meK9
T21924 191-192 HYPH denotes -
T21925 211-216 NNS denotes marks
T21926 198-201 CC denotes and
T21927 202-204 NN denotes H3
T21928 205-210 NN denotes 3meK9
T21929 204-205 HYPH denotes -
T21930 217-220 CC denotes and
T21931 221-225 NN denotes HP1β
T21932 226-233 NN denotes protein
T21933 234-236 IN denotes on
T21934 237-240 DT denotes the
T21935 245-254 NN denotes chromatin
T21936 241-244 NN denotes sex
T21937 255-257 IN denotes as
T21938 263-271 VBP denotes progress
T21939 258-262 PRP denotes they
T21940 272-274 IN denotes to
T21941 275-284 NN denotes diplonema
T21942 284-286 , denotes ,
T21943 286-289 CC denotes but
T21944 290-292 PRP denotes we
T21945 293-301 VBD denotes observed
T21946 302-308 NN denotes mutant
T21947 319-324 NNS denotes cells
T21948 309-318 NN denotes diplotene
T21949 325-332 VBG denotes lacking
T21950 333-338 DT denotes these
T21951 339-347 NNS denotes features
T21952 347-348 . denotes .
T21953 348-514 sentence denotes Thus, although a minority of Dmrt7 mutant germ cells can progress from pachynema to diplonema, there are defects in sex chromatin modification during the transition.
T21954 349-353 RB denotes Thus
T21955 450-453 VBP denotes are
T21956 353-355 , denotes ,
T21957 355-363 IN denotes although
T21958 406-414 VB denotes progress
T21959 364-365 DT denotes a
T21960 366-374 NN denotes minority
T21961 375-377 IN denotes of
T21962 378-383 NN denotes Dmrt7
T21963 384-390 NN denotes mutant
T21964 396-401 NNS denotes cells
T21965 391-395 NN denotes germ
T21966 402-405 MD denotes can
T21967 415-419 IN denotes from
T21968 420-429 NN denotes pachynema
T21969 430-432 IN denotes to
T21970 433-442 NN denotes diplonema
T21971 442-444 , denotes ,
T21972 444-449 EX denotes there
T21973 454-461 NNS denotes defects
T21974 462-464 IN denotes in
T21975 465-468 NN denotes sex
T21976 469-478 NN denotes chromatin
T21977 479-491 NN denotes modification
T21978 492-498 IN denotes during
T21979 499-502 DT denotes the
T21980 503-513 NN denotes transition
T21981 513-514 . denotes .
T21982 514-661 sentence denotes A function in male sex chromatin can reconcile the findings that DMRT7 is required for meiosis, but only in males, and is present only in mammals.
T21983 515-516 DT denotes A
T21984 517-525 NN denotes function
T21985 552-561 VB denotes reconcile
T21986 526-528 IN denotes in
T21987 529-533 JJ denotes male
T21988 538-547 NN denotes chromatin
T21989 534-537 NN denotes sex
T21990 548-551 MD denotes can
T21991 562-565 DT denotes the
T21992 566-574 NNS denotes findings
T21993 575-579 IN denotes that
T21994 589-597 VBN denotes required
T21995 580-585 NN denotes DMRT7
T21996 586-588 VBZ denotes is
T21997 598-601 IN denotes for
T21998 602-609 NN denotes meiosis
T21999 609-611 , denotes ,
T22000 611-614 CC denotes but
T22001 615-619 RB denotes only
T22002 620-622 IN denotes in
T22003 623-628 NNS denotes males
T22004 628-630 , denotes ,
T22005 630-633 CC denotes and
T22006 634-636 VBZ denotes is
T22007 637-644 JJ denotes present
T22008 645-649 RB denotes only
T22009 650-652 IN denotes in
T22010 653-660 NNS denotes mammals
T22011 660-661 . denotes .
T22012 661-832 sentence denotes A proportion of mutant diplotene cells have apparently normal sex chromatin (for example, Figure 8M); these are likely to be the cells that can progress beyond diplonema.
T22013 662-663 DT denotes A
T22014 664-674 NN denotes proportion
T22015 701-705 VBP denotes have
T22016 675-677 IN denotes of
T22017 678-684 NN denotes mutant
T22018 695-700 NNS denotes cells
T22019 685-694 NN denotes diplotene
T22020 770-773 VBP denotes are
T22021 706-716 RB denotes apparently
T22022 717-723 JJ denotes normal
T22023 728-737 NN denotes chromatin
T22024 724-727 NN denotes sex
T22025 738-739 -LRB- denotes (
T22026 759-761 NN denotes 8M
T22027 739-742 IN denotes for
T22028 743-750 NN denotes example
T22029 750-752 , denotes ,
T22030 752-758 NN denotes Figure
T22031 761-762 -RRB- denotes )
T22032 762-763 : denotes ;
T22033 764-769 DT denotes these
T22034 774-780 JJ denotes likely
T22035 781-783 TO denotes to
T22036 784-786 VB denotes be
T22037 787-790 DT denotes the
T22038 791-796 NNS denotes cells
T22039 797-801 WDT denotes that
T22040 806-814 VB denotes progress
T22041 802-805 MD denotes can
T22042 815-821 IN denotes beyond
T22043 822-831 NN denotes diplonema
T22044 831-832 . denotes .
R5440 T21888 T21889 nsubj We,observe
R5441 T21890 T21889 aux did,observe
R5442 T21891 T21889 punct ", ",observe
R5443 T21892 T21889 advmod however,observe
R5444 T21893 T21889 punct ", ",observe
R5445 T21894 T21895 nummod three,defects
R5446 T21895 T21889 dobj defects,observe
R5447 T21896 T21895 amod specific,defects
R5448 T21897 T21889 prep in,observe
R5449 T21898 T21899 det the,chromatin
R5450 T21899 T21897 pobj chromatin,in
R5451 T21900 T21899 compound sex,chromatin
R5452 T21901 T21899 prep of,chromatin
R5453 T21902 T21903 compound Dmrt7,mutant
R5454 T21903 T21904 compound mutant,cells
R5455 T21904 T21901 pobj cells,of
R5456 T21905 T21904 compound germ,cells
R5457 T21906 T21907 dep that,avoided
R5458 T21907 T21904 relcl avoided,cells
R5459 T21908 T21907 dobj arrest,avoided
R5460 T21909 T21908 prep in,arrest
R5461 T21910 T21909 pobj pachynema,in
R5462 T21911 T21907 cc and,avoided
R5463 T21912 T21907 conj were,avoided
R5464 T21913 T21912 acomp able,were
R5465 T21914 T21915 aux to,enter
R5466 T21915 T21913 xcomp enter,able
R5467 T21916 T21915 dobj diplonema,enter
R5468 T21917 T21889 punct .,observe
R5469 T21919 T21920 advmod Normally,accumulate
R5470 T21921 T21920 nsubj cells,accumulate
R5471 T21922 T21923 nmod H3,2meK9
R5472 T21923 T21925 nmod 2meK9,marks
R5473 T21924 T21923 punct -,2meK9
R5474 T21925 T21920 dobj marks,accumulate
R5475 T21926 T21923 cc and,2meK9
R5476 T21927 T21928 compound H3,3meK9
R5477 T21928 T21923 conj 3meK9,2meK9
R5478 T21929 T21928 punct -,3meK9
R5479 T21930 T21925 cc and,marks
R5480 T21931 T21932 compound HP1β,protein
R5481 T21932 T21925 conj protein,marks
R5482 T21933 T21920 prep on,accumulate
R5483 T21934 T21935 det the,chromatin
R5484 T21935 T21933 pobj chromatin,on
R5485 T21936 T21935 compound sex,chromatin
R5486 T21937 T21938 mark as,progress
R5487 T21938 T21920 advcl progress,accumulate
R5488 T21939 T21938 nsubj they,progress
R5489 T21940 T21938 prep to,progress
R5490 T21941 T21940 pobj diplonema,to
R5491 T21942 T21920 punct ", ",accumulate
R5492 T21943 T21920 cc but,accumulate
R5493 T21944 T21945 nsubj we,observed
R5494 T21945 T21920 conj observed,accumulate
R5495 T21946 T21947 compound mutant,cells
R5496 T21947 T21945 dobj cells,observed
R5497 T21948 T21947 compound diplotene,cells
R5498 T21949 T21947 acl lacking,cells
R5499 T21950 T21951 det these,features
R5500 T21951 T21949 dobj features,lacking
R5501 T21952 T21945 punct .,observed
R5502 T21954 T21955 advmod Thus,are
R5503 T21956 T21955 punct ", ",are
R5504 T21957 T21958 mark although,progress
R5505 T21958 T21955 advcl progress,are
R5506 T21959 T21960 det a,minority
R5507 T21960 T21958 nsubj minority,progress
R5508 T21961 T21960 prep of,minority
R5509 T21962 T21963 compound Dmrt7,mutant
R5510 T21963 T21964 compound mutant,cells
R5511 T21964 T21961 pobj cells,of
R5512 T21965 T21964 compound germ,cells
R5513 T21966 T21958 aux can,progress
R5514 T21967 T21958 prep from,progress
R5515 T21968 T21967 pobj pachynema,from
R5516 T21969 T21958 prep to,progress
R5517 T21970 T21969 pobj diplonema,to
R5518 T21971 T21955 punct ", ",are
R5519 T21972 T21955 expl there,are
R5520 T21973 T21955 attr defects,are
R5521 T21974 T21973 prep in,defects
R5522 T21975 T21976 compound sex,chromatin
R5523 T21976 T21977 compound chromatin,modification
R5524 T21977 T21974 pobj modification,in
R5525 T21978 T21955 prep during,are
R5526 T21979 T21980 det the,transition
R5527 T21980 T21978 pobj transition,during
R5528 T21981 T21955 punct .,are
R5529 T21983 T21984 det A,function
R5530 T21984 T21985 nsubj function,reconcile
R5531 T21986 T21984 prep in,function
R5532 T21987 T21988 amod male,chromatin
R5533 T21988 T21986 pobj chromatin,in
R5534 T21989 T21988 compound sex,chromatin
R5535 T21990 T21985 aux can,reconcile
R5536 T21991 T21992 det the,findings
R5537 T21992 T21985 dobj findings,reconcile
R5538 T21993 T21994 mark that,required
R5539 T21994 T21992 acl required,findings
R5540 T21995 T21994 nsubjpass DMRT7,required
R5541 T21996 T21994 auxpass is,required
R5542 T21997 T21994 prep for,required
R5543 T21998 T21997 pobj meiosis,for
R5544 T21999 T21994 punct ", ",required
R5545 T22000 T21994 cc but,required
R5546 T22001 T22002 advmod only,in
R5547 T22002 T22000 prep in,but
R5548 T22003 T22002 pobj males,in
R5549 T22004 T21985 punct ", ",reconcile
R5550 T22005 T21985 cc and,reconcile
R5551 T22006 T21985 conj is,reconcile
R5552 T22007 T22006 acomp present,is
R5553 T22008 T22009 advmod only,in
R5554 T22009 T22006 prep in,is
R5555 T22010 T22009 pobj mammals,in
R5556 T22011 T21985 punct .,reconcile
R5557 T22013 T22014 det A,proportion
R5558 T22014 T22015 nsubj proportion,have
R5559 T22015 T22020 ccomp have,are
R5560 T22016 T22014 prep of,proportion
R5561 T22017 T22018 compound mutant,cells
R5562 T22018 T22016 pobj cells,of
R5563 T22019 T22018 compound diplotene,cells
R5564 T22021 T22022 advmod apparently,normal
R5565 T22022 T22023 amod normal,chromatin
R5566 T22023 T22015 dobj chromatin,have
R5567 T22024 T22023 compound sex,chromatin
R5568 T22025 T22026 punct (,8M
R5569 T22026 T22015 parataxis 8M,have
R5570 T22027 T22026 prep for,8M
R5571 T22028 T22027 pobj example,for
R5572 T22029 T22026 punct ", ",8M
R5573 T22030 T22026 compound Figure,8M
R5574 T22031 T22026 punct ),8M
R5575 T22032 T22020 punct ;,are
R5576 T22033 T22020 nsubj these,are
R5577 T22034 T22020 acomp likely,are
R5578 T22035 T22036 aux to,be
R5579 T22036 T22034 xcomp be,likely
R5580 T22037 T22038 det the,cells
R5581 T22038 T22036 attr cells,be
R5582 T22039 T22040 dep that,progress
R5583 T22040 T22038 relcl progress,cells
R5584 T22041 T22040 aux can,progress
R5585 T22042 T22040 prep beyond,progress
R5586 T22043 T22042 pobj diplonema,beyond
R5587 T22044 T22020 punct .,are

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20986 724-737 GO:0001739 denotes sex chromatin
T20987 822-831 GO:0000240 denotes diplonema
T20962 55-68 GO:0001739 denotes sex chromatin
T20963 72-77 PR:000006549 denotes Dmrt7
T20964 85-95 CL:0000586 denotes germ cells
T20965 119-128 GO:0000239 denotes pachynema
T20966 152-161 GO:0000240 denotes diplonema
T20967 189-191 PR:000027594 denotes H3
T20968 189-197 SO:0001728 denotes H3-2meK9
T20969 202-204 PR:000027594 denotes H3
T20970 202-210 SO:0001707 denotes H3-3meK9
T20971 221-225 PR:000005082 denotes HP1β
T20972 241-254 GO:0001739 denotes sex chromatin
T20973 275-284 GO:0000240 denotes diplonema
T20974 309-318 GO:0000240 denotes diplotene
T20975 378-383 PR:000006549 denotes Dmrt7
T20976 391-401 CL:0000586 denotes germ cells
T20977 420-429 GO:0000239 denotes pachynema
T20978 433-442 GO:0000240 denotes diplonema
T20979 465-478 GO:0001739 denotes sex chromatin
T20980 469-491 GO:0016568 denotes chromatin modification
T20981 534-547 GO:0001739 denotes sex chromatin
T20982 580-585 PR:000006549 denotes DMRT7
T20983 602-609 GO:0007126 denotes meiosis
T20984 653-660 NCBITaxon:40674 denotes mammals
T20985 685-694 GO:0000240 denotes diplotene

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T21236 55-68 GO:0001739 denotes sex chromatin
T21237 72-77 PR_EXT:000006549 denotes Dmrt7
T21238 78-84 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21239 85-95 CL:0000586 denotes germ cells
T21240 90-95 CL_GO_EXT:cell denotes cells
T21241 119-128 GO:0000239 denotes pachynema
T21242 152-161 GO:0000240 denotes diplonema
T21243 172-177 CL_GO_EXT:cell denotes cells
T21244 189-191 PR_EXT:000027594 denotes H3
T21245 189-197 SO_EXT:0001728 denotes H3-2meK9
T21246 202-204 PR_EXT:000027594 denotes H3
T21247 202-210 SO_EXT:0001707 denotes H3-3meK9
T21248 211-216 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marks
T21249 221-225 PR_EXT:000005082 denotes HP1β
T21250 226-233 CHEBI_PR_EXT:protein denotes protein
T21251 241-254 GO:0001739 denotes sex chromatin
T21252 275-284 GO:0000240 denotes diplonema
T21253 302-308 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21254 309-318 GO:0000240 denotes diplotene
T21255 319-324 CL_GO_EXT:cell denotes cells
T21256 378-383 PR_EXT:000006549 denotes Dmrt7
T21257 384-390 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21258 391-401 CL:0000586 denotes germ cells
T21259 396-401 CL_GO_EXT:cell denotes cells
T21260 420-429 GO:0000239 denotes pachynema
T21261 433-442 GO:0000240 denotes diplonema
T21262 465-478 GO:0001739 denotes sex chromatin
T21263 469-491 GO:0016568 denotes chromatin modification
T21264 479-491 SO_EXT:sequence_alteration_entity_or_process denotes modification
T21265 529-533 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T21266 534-547 GO:0001739 denotes sex chromatin
T21267 580-585 PR_EXT:000006549 denotes DMRT7
T21268 602-609 GO:0007126 denotes meiosis
T21269 623-628 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T21270 653-660 NCBITaxon:40674 denotes mammals
T21271 678-684 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21272 685-694 GO:0000240 denotes diplotene
T21273 695-700 CL_GO_EXT:cell denotes cells
T21274 724-737 GO:0001739 denotes sex chromatin
T21275 791-796 CL_GO_EXT:cell denotes cells
T21276 822-831 GO:0000240 denotes diplonema