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PMC:1853120 / 30157-30848 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T17293 0-8 IN denotes Although
T17294 25-29 VB denotes form
T17295 9-12 DT denotes the
T17296 16-20 NN denotes body
T17297 13-15 NN denotes XY
T17298 21-24 MD denotes can
T17299 68-78 VBD denotes considered
T17300 30-36 IN denotes during
T17301 37-46 NN denotes pachynema
T17302 47-49 IN denotes in
T17303 50-55 NN denotes Dmrt7
T17304 56-63 NNS denotes mutants
T17305 63-65 , denotes ,
T17306 65-67 PRP denotes we
T17307 79-82 DT denotes the
T17308 83-94 NN denotes possibility
T17309 95-99 IN denotes that
T17310 148-159 VBN denotes established
T17311 100-115 JJ denotes transcriptional
T17312 116-125 NN denotes silencing
T17313 126-131 MD denotes might
T17314 132-135 RB denotes not
T17315 136-138 VB denotes be
T17316 139-147 RB denotes properly
T17317 159-160 . denotes .
T17318 160-303 sentence denotes This would be consistent with the Dmrt7 phenotype: pachytene cells that escape from MSCI normally are eliminated prior to late-pachytene [17].
T17319 161-165 DT denotes This
T17320 172-174 VB denotes be
T17321 166-171 MD denotes would
T17322 263-273 VBN denotes eliminated
T17323 175-185 JJ denotes consistent
T17324 186-190 IN denotes with
T17325 191-194 DT denotes the
T17326 201-210 NN denotes phenotype
T17327 195-200 NN denotes Dmrt7
T17328 210-212 : denotes :
T17329 212-221 NN denotes pachytene
T17330 222-227 NNS denotes cells
T17331 228-232 WDT denotes that
T17332 233-239 VBP denotes escape
T17333 240-244 IN denotes from
T17334 245-249 NN denotes MSCI
T17335 250-258 RB denotes normally
T17336 259-262 VBP denotes are
T17337 274-279 IN denotes prior
T17338 280-282 IN denotes to
T17339 283-287 JJ denotes late
T17340 288-297 NN denotes pachytene
T17341 287-288 HYPH denotes -
T17342 298-299 -LRB- denotes [
T17343 299-301 CD denotes 17
T17344 301-302 -RRB- denotes ]
T17345 302-303 . denotes .
T17346 303-525 sentence denotes Recently, MSCI has been shown to continue into meiosis II and spermiogenesis, apparently mediated by a distinct chromatin compartment termed postmeiotic sex chromatin (PMSC) that is established starting in diplonema [16].
T17347 304-312 RB denotes Recently
T17348 328-333 VBN denotes shown
T17349 312-314 , denotes ,
T17350 314-318 NN denotes MSCI
T17351 319-322 VBZ denotes has
T17352 323-327 VBN denotes been
T17353 334-336 TO denotes to
T17354 337-345 VB denotes continue
T17355 346-350 IN denotes into
T17356 351-358 NN denotes meiosis
T17357 359-361 CD denotes II
T17358 362-365 CC denotes and
T17359 366-380 NN denotes spermiogenesis
T17360 380-382 , denotes ,
T17361 382-392 RB denotes apparently
T17362 393-401 VBN denotes mediated
T17363 402-404 IN denotes by
T17364 405-406 DT denotes a
T17365 426-437 NN denotes compartment
T17366 407-415 JJ denotes distinct
T17367 416-425 NN denotes chromatin
T17368 438-444 VBN denotes termed
T17369 445-456 JJ denotes postmeiotic
T17370 461-470 NN denotes chromatin
T17371 457-460 NN denotes sex
T17372 471-472 -LRB- denotes (
T17373 472-476 NN denotes PMSC
T17374 476-477 -RRB- denotes )
T17375 478-482 WDT denotes that
T17376 486-497 VBN denotes established
T17377 483-485 VBZ denotes is
T17378 498-506 VBG denotes starting
T17379 507-509 IN denotes in
T17380 510-519 NN denotes diplonema
T17381 520-521 -LRB- denotes [
T17382 521-523 CD denotes 16
T17383 523-524 -RRB- denotes ]
T17384 524-525 . denotes .
T17385 525-691 sentence denotes We therefore asked whether the pachytene germ cell death in Dmrt7 mutants is associated with a failure either to initiate or to maintain sex chromosome inactivation.
T17386 526-528 PRP denotes We
T17387 539-544 VBD denotes asked
T17388 529-538 RB denotes therefore
T17389 545-552 IN denotes whether
T17390 603-613 VBN denotes associated
T17391 553-556 DT denotes the
T17392 577-582 NN denotes death
T17393 557-566 NN denotes pachytene
T17394 567-571 NN denotes germ
T17395 572-576 NN denotes cell
T17396 583-585 IN denotes in
T17397 586-591 NN denotes Dmrt7
T17398 592-599 NNS denotes mutants
T17399 600-602 VBZ denotes is
T17400 614-618 IN denotes with
T17401 619-620 DT denotes a
T17402 621-628 NN denotes failure
T17403 629-635 CC denotes either
T17404 639-647 VB denotes initiate
T17405 636-638 TO denotes to
T17406 648-650 CC denotes or
T17407 651-653 TO denotes to
T17408 654-662 VB denotes maintain
T17409 663-666 NN denotes sex
T17410 667-677 NN denotes chromosome
T17411 678-690 NN denotes inactivation
T17412 690-691 . denotes .
R4269 T17293 T17294 mark Although,form
R4270 T17294 T17299 advcl form,considered
R4271 T17295 T17296 det the,body
R4272 T17296 T17294 nsubj body,form
R4273 T17297 T17296 compound XY,body
R4274 T17298 T17294 aux can,form
R4275 T17300 T17294 prep during,form
R4276 T17301 T17300 pobj pachynema,during
R4277 T17302 T17294 prep in,form
R4278 T17303 T17304 compound Dmrt7,mutants
R4279 T17304 T17302 pobj mutants,in
R4280 T17305 T17299 punct ", ",considered
R4281 T17306 T17299 nsubj we,considered
R4282 T17307 T17308 det the,possibility
R4283 T17308 T17299 dobj possibility,considered
R4284 T17309 T17310 mark that,established
R4285 T17310 T17308 acl established,possibility
R4286 T17311 T17312 amod transcriptional,silencing
R4287 T17312 T17310 nsubjpass silencing,established
R4288 T17313 T17310 aux might,established
R4289 T17314 T17310 neg not,established
R4290 T17315 T17310 auxpass be,established
R4291 T17316 T17310 advmod properly,established
R4292 T17317 T17299 punct .,considered
R4293 T17319 T17320 nsubj This,be
R4294 T17320 T17322 ccomp be,eliminated
R4295 T17321 T17320 aux would,be
R4296 T17323 T17320 acomp consistent,be
R4297 T17324 T17323 prep with,consistent
R4298 T17325 T17326 det the,phenotype
R4299 T17326 T17324 pobj phenotype,with
R4300 T17327 T17326 compound Dmrt7,phenotype
R4301 T17328 T17322 punct : ,eliminated
R4302 T17329 T17330 compound pachytene,cells
R4303 T17330 T17322 nsubjpass cells,eliminated
R4304 T17331 T17332 dep that,escape
R4305 T17332 T17330 relcl escape,cells
R4306 T17333 T17332 prep from,escape
R4307 T17334 T17333 pobj MSCI,from
R4308 T17335 T17322 advmod normally,eliminated
R4309 T17336 T17322 auxpass are,eliminated
R4310 T17337 T17322 prep prior,eliminated
R4311 T17338 T17337 prep to,prior
R4312 T17339 T17340 amod late,pachytene
R4313 T17340 T17338 pobj pachytene,to
R4314 T17341 T17340 punct -,pachytene
R4315 T17342 T17343 punct [,17
R4316 T17343 T17322 parataxis 17,eliminated
R4317 T17344 T17343 punct ],17
R4318 T17345 T17322 punct .,eliminated
R4319 T17347 T17348 advmod Recently,shown
R4320 T17349 T17348 punct ", ",shown
R4321 T17350 T17348 nsubjpass MSCI,shown
R4322 T17351 T17348 aux has,shown
R4323 T17352 T17348 auxpass been,shown
R4324 T17353 T17354 aux to,continue
R4325 T17354 T17348 xcomp continue,shown
R4326 T17355 T17354 prep into,continue
R4327 T17356 T17355 pobj meiosis,into
R4328 T17357 T17356 nummod II,meiosis
R4329 T17358 T17356 cc and,meiosis
R4330 T17359 T17356 conj spermiogenesis,meiosis
R4331 T17360 T17354 punct ", ",continue
R4332 T17361 T17362 advmod apparently,mediated
R4333 T17362 T17354 advcl mediated,continue
R4334 T17363 T17362 prep by,mediated
R4335 T17364 T17365 det a,compartment
R4336 T17365 T17363 pobj compartment,by
R4337 T17366 T17365 amod distinct,compartment
R4338 T17367 T17365 compound chromatin,compartment
R4339 T17368 T17365 acl termed,compartment
R4340 T17369 T17370 amod postmeiotic,chromatin
R4341 T17370 T17368 oprd chromatin,termed
R4342 T17371 T17370 compound sex,chromatin
R4343 T17372 T17370 punct (,chromatin
R4344 T17373 T17370 appos PMSC,chromatin
R4345 T17374 T17365 punct ),compartment
R4346 T17375 T17376 dep that,established
R4347 T17376 T17365 relcl established,compartment
R4348 T17377 T17376 auxpass is,established
R4349 T17378 T17376 advcl starting,established
R4350 T17379 T17378 prep in,starting
R4351 T17380 T17379 pobj diplonema,in
R4352 T17381 T17382 punct [,16
R4353 T17382 T17348 parataxis 16,shown
R4354 T17383 T17382 punct ],16
R4355 T17384 T17348 punct .,shown
R4356 T17386 T17387 nsubj We,asked
R4357 T17388 T17387 advmod therefore,asked
R4358 T17389 T17390 mark whether,associated
R4359 T17390 T17387 ccomp associated,asked
R4360 T17391 T17392 det the,death
R4361 T17392 T17390 nsubjpass death,associated
R4362 T17393 T17392 compound pachytene,death
R4363 T17394 T17395 compound germ,cell
R4364 T17395 T17392 compound cell,death
R4365 T17396 T17392 prep in,death
R4366 T17397 T17398 compound Dmrt7,mutants
R4367 T17398 T17396 pobj mutants,in
R4368 T17399 T17390 auxpass is,associated
R4369 T17400 T17390 prep with,associated
R4370 T17401 T17402 det a,failure
R4371 T17402 T17400 pobj failure,with
R4372 T17403 T17404 preconj either,initiate
R4373 T17404 T17402 acl initiate,failure
R4374 T17405 T17404 aux to,initiate
R4375 T17406 T17404 cc or,initiate
R4376 T17407 T17408 aux to,maintain
R4377 T17408 T17404 conj maintain,initiate
R4378 T17409 T17410 compound sex,chromosome
R4379 T17410 T17411 compound chromosome,inactivation
R4380 T17411 T17408 dobj inactivation,maintain
R4381 T17412 T17387 punct .,asked

2_test

Id Subject Object Predicate Lexical cue
17447844-16580996-85805848 299-301 16580996 denotes 17
17447844-16581510-85805849 521-523 16581510 denotes 16
T2977 299-301 16580996 denotes 17
T9467 521-523 16581510 denotes 16

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T16952 13-20 GO:0001741 denotes XY body
T16953 37-46 GO:0000239 denotes pachynema
T16954 50-55 PR:000006549 denotes Dmrt7
T16955 100-125 GO:0006342 denotes transcriptional silencing
T16956 195-200 PR:000006549 denotes Dmrt7
T16957 212-221 GO:0000239 denotes pachytene
T16958 288-297 GO:0000239 denotes pachytene
T16959 351-361 GO:0007135 denotes meiosis II
T16960 366-380 GO:0007286 denotes spermiogenesis
T16961 416-425 GO:0000785 denotes chromatin
T16962 449-456 GO:0007126 denotes meiotic
T16963 457-470 GO:0001739 denotes sex chromatin
T16964 510-519 GO:0000240 denotes diplonema
T16965 557-566 GO:0000239 denotes pachytene
T16966 567-576 CL:0000586 denotes germ cell
T16967 572-582 GO:0008219 denotes cell death
T16968 586-591 PR:000006549 denotes Dmrt7
T16969 663-677 GO:0000803 denotes sex chromosome

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T17082 13-20 GO:0001741 denotes XY body
T17083 37-46 GO:0000239 denotes pachynema
T17084 50-55 PR_EXT:000006549 denotes Dmrt7
T17085 56-63 SO_EXT:sequence_altered_entity denotes mutants
T17086 100-125 GO:0006342 denotes transcriptional silencing
T17087 195-200 PR_EXT:000006549 denotes Dmrt7
T17088 212-221 GO:0000239 denotes pachytene
T17089 222-227 CL_GO_EXT:cell denotes cells
T17090 263-273 GO_EXT:killing denotes eliminated
T17091 288-297 GO:0000239 denotes pachytene
T17092 351-361 GO:0007135 denotes meiosis II
T17093 366-380 GO:0007286 denotes spermiogenesis
T17094 416-425 GO:0000785 denotes chromatin
T17095 449-456 GO:0007126 denotes meiotic
T17096 457-470 GO:0001739 denotes sex chromatin
T17097 510-519 GO:0000240 denotes diplonema
T17098 557-566 GO:0000239 denotes pachytene
T17099 567-576 CL:0000586 denotes germ cell
T17100 572-576 CL_GO_EXT:cell denotes cell
T17101 572-582 GO:0008219 denotes cell death
T17102 586-591 PR_EXT:000006549 denotes Dmrt7
T17103 592-599 SO_EXT:sequence_altered_entity denotes mutants
T17104 663-677 GO:0000803 denotes sex chromosome
T17105 667-677 GO_SO_EXT:chromosome denotes chromosome