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PMC:1853120 / 10535-11353 JSONTXT

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Id Subject Object Predicate Lexical cue
T27915 660-661 HYPH denotes -
T27803 202-203 -LRB- denotes (
T27759 10-20 NN denotes Expression
T27760 21-23 IN denotes of
T27761 24-29 NN denotes Dmrt7
T27762 30-34 NN denotes mRNA
T27763 35-38 CC denotes and
T27764 39-46 NN denotes Protein
T27765 46-112 sentence denotes (A) RT-PCR analysis of Dmrt7 mRNA from ten organs of adult mouse.
T27766 47-48 -LRB- denotes (
T27767 48-49 LS denotes A
T27768 58-66 NN denotes analysis
T27769 49-50 -RRB- denotes )
T27770 51-53 NN denotes RT
T27771 54-57 NN denotes PCR
T27772 53-54 HYPH denotes -
T27773 67-69 IN denotes of
T27774 70-75 NN denotes Dmrt7
T27775 76-80 NN denotes mRNA
T27776 81-85 IN denotes from
T27777 86-89 CD denotes ten
T27778 90-96 NNS denotes organs
T27779 97-99 IN denotes of
T27780 100-105 JJ denotes adult
T27781 106-111 NN denotes mouse
T27782 111-112 . denotes .
T27783 112-215 sentence denotes cDNA from each organ was amplified with primers specific for Dmrt7 (top row) and β-actin (bottom row).
T27784 113-117 NN denotes cDNA
T27785 138-147 VBN denotes amplified
T27786 118-122 IN denotes from
T27787 123-127 DT denotes each
T27788 128-133 NN denotes organ
T27789 134-137 VBD denotes was
T27790 148-152 IN denotes with
T27791 153-160 NNS denotes primers
T27792 161-169 JJ denotes specific
T27793 170-173 IN denotes for
T27794 174-179 NN denotes Dmrt7
T27795 180-181 -LRB- denotes (
T27796 185-188 NN denotes row
T27797 181-184 JJ denotes top
T27798 188-189 -RRB- denotes )
T27799 190-193 CC denotes and
T27800 194-195 NN denotes β
T27801 196-201 NN denotes actin
T27802 195-196 HYPH denotes -
T27804 210-213 NN denotes row
T27805 203-209 JJ denotes bottom
T27806 213-214 -RRB- denotes )
T27807 214-215 . denotes .
T27808 215-284 sentence denotes (B) Dmrt7 mRNA expression during the first round of spermatogenesis.
T27809 216-217 -LRB- denotes (
T27810 217-218 LS denotes B
T27811 231-241 NN denotes expression
T27812 218-219 -RRB- denotes )
T27813 220-225 NN denotes Dmrt7
T27814 226-230 NN denotes mRNA
T27815 242-248 IN denotes during
T27816 249-252 DT denotes the
T27817 259-264 NN denotes round
T27818 253-258 JJ denotes first
T27819 265-267 IN denotes of
T27820 268-283 NN denotes spermatogenesis
T27821 283-284 . denotes .
T27822 284-371 sentence denotes cDNAs obtained from testis at the indicated days after birth were amplified as in (A).
T27823 285-290 NNS denotes cDNAs
T27824 351-360 VBN denotes amplified
T27825 291-299 VBN denotes obtained
T27826 300-304 IN denotes from
T27827 305-311 NN denotes testis
T27828 312-314 IN denotes at
T27829 315-318 DT denotes the
T27830 329-333 NNS denotes days
T27831 319-328 VBN denotes indicated
T27832 334-339 IN denotes after
T27833 340-345 NN denotes birth
T27834 346-350 VBD denotes were
T27835 361-363 IN denotes as
T27836 364-366 IN denotes in
T27837 367-368 -LRB- denotes (
T27838 368-369 NN denotes A
T27839 369-370 -RRB- denotes )
T27840 370-371 . denotes .
T27841 371-401 sentence denotes (C) DMRT7 protein expression.
T27842 372-373 -LRB- denotes (
T27843 373-374 LS denotes C
T27844 390-400 NN denotes expression
T27845 374-375 -RRB- denotes )
T27846 376-381 NN denotes DMRT7
T27847 382-389 NN denotes protein
T27848 400-401 . denotes .
T27849 401-514 sentence denotes Immunofluorescence of testis sections from 6-wk-old male stained with antibody to DMRT7 (green) and DAPI (blue).
T27850 402-420 NN denotes Immunofluorescence
T27851 421-423 IN denotes of
T27852 424-430 NN denotes testis
T27853 431-439 NNS denotes sections
T27854 440-444 IN denotes from
T27855 445-446 CD denotes 6
T27856 447-449 NN denotes wk
T27857 446-447 HYPH denotes -
T27858 450-453 JJ denotes old
T27859 449-450 HYPH denotes -
T27860 454-458 JJ denotes male
T27861 459-466 VBN denotes stained
T27862 467-471 IN denotes with
T27863 472-480 NN denotes antibody
T27864 481-483 IN denotes to
T27865 484-489 NN denotes DMRT7
T27866 490-491 -LRB- denotes (
T27867 491-496 JJ denotes green
T27868 496-497 -RRB- denotes )
T27869 498-501 CC denotes and
T27870 502-506 NN denotes DAPI
T27871 507-508 -LRB- denotes (
T27872 508-512 JJ denotes blue
T27873 512-513 -RRB- denotes )
T27874 513-514 . denotes .
T27875 514-561 sentence denotes (D) DMRT7 subcellular localization to XY body.
T27876 515-516 -LRB- denotes (
T27877 516-517 LS denotes D
T27878 537-549 NN denotes localization
T27879 517-518 -RRB- denotes )
T27880 519-524 NN denotes DMRT7
T27881 525-536 JJ denotes subcellular
T27882 550-552 IN denotes to
T27883 553-555 NN denotes XY
T27884 556-560 NN denotes body
T27885 560-561 . denotes .
T27886 561-655 sentence denotes Testis sections from 6-wk-old male stained with antibodies to DMRT7 (red) and SUMO-1 (green).
T27887 562-568 NN denotes Testis
T27888 569-577 NNS denotes sections
T27889 578-582 IN denotes from
T27890 583-584 CD denotes 6
T27891 585-587 NN denotes wk
T27892 584-585 HYPH denotes -
T27893 588-591 JJ denotes old
T27894 587-588 HYPH denotes -
T27895 592-596 JJ denotes male
T27896 597-604 VBN denotes stained
T27897 605-609 IN denotes with
T27898 610-620 NNS denotes antibodies
T27899 621-623 IN denotes to
T27900 624-629 NN denotes DMRT7
T27901 630-631 -LRB- denotes (
T27902 631-634 JJ denotes red
T27903 634-635 -RRB- denotes )
T27904 636-639 CC denotes and
T27905 640-644 NN denotes SUMO
T27906 644-645 HYPH denotes -
T27907 645-646 CD denotes 1
T27908 647-648 -LRB- denotes (
T27909 648-653 JJ denotes green
T27910 653-654 -RRB- denotes )
T27911 654-655 . denotes .
T27912 655-691 sentence denotes SUMO-1 is localized to the XY body.
T27913 656-660 NN denotes SUMO
T27914 666-675 VBN denotes localized
T27916 661-662 CD denotes 1
T27917 663-665 VBZ denotes is
T27918 676-678 IN denotes to
T27919 679-682 DT denotes the
T27920 686-690 NN denotes body
T27921 683-685 NN denotes XY
T27922 690-691 . denotes .
T27923 691-741 sentence denotes Right-most panel shows merge of other two panels.
T27924 692-702 JJ denotes Right-most
T27925 703-708 NN denotes panel
T27926 709-714 VBZ denotes shows
T27927 715-720 NN denotes merge
T27928 721-723 IN denotes of
T27929 724-729 JJ denotes other
T27930 734-740 NNS denotes panels
T27931 730-733 CD denotes two
T27932 740-741 . denotes .
T27933 741-818 sentence denotes Inserts show higher magnification of pachytene spermatocytes with XY bodies.
T27934 742-749 NNS denotes Inserts
T27935 750-754 VBP denotes show
T27936 755-761 JJR denotes higher
T27937 762-775 NN denotes magnification
T27938 776-778 IN denotes of
T27939 779-788 NN denotes pachytene
T27940 789-802 NNS denotes spermatocytes
T27941 803-807 IN denotes with
T27942 808-810 NN denotes XY
T27943 811-817 NNS denotes bodies
T27944 817-818 . denotes .
R7704 T27760 T27759 prep of,Expression
R7705 T27761 T27762 compound Dmrt7,mRNA
R7706 T27762 T27760 pobj mRNA,of
R7707 T27763 T27762 cc and,mRNA
R7708 T27764 T27762 conj Protein,mRNA
R7709 T27766 T27767 punct (,A
R7710 T27767 T27768 meta A,analysis
R7711 T27769 T27767 punct ),A
R7712 T27770 T27771 compound RT,PCR
R7713 T27771 T27768 compound PCR,analysis
R7714 T27772 T27771 punct -,PCR
R7715 T27773 T27768 prep of,analysis
R7716 T27774 T27775 compound Dmrt7,mRNA
R7717 T27775 T27773 pobj mRNA,of
R7718 T27776 T27775 prep from,mRNA
R7719 T27777 T27778 nummod ten,organs
R7720 T27778 T27776 pobj organs,from
R7721 T27779 T27778 prep of,organs
R7722 T27780 T27781 amod adult,mouse
R7723 T27781 T27779 pobj mouse,of
R7724 T27782 T27768 punct .,analysis
R7725 T27784 T27785 nsubjpass cDNA,amplified
R7726 T27786 T27784 prep from,cDNA
R7727 T27787 T27788 det each,organ
R7728 T27788 T27786 pobj organ,from
R7729 T27789 T27785 auxpass was,amplified
R7730 T27790 T27785 prep with,amplified
R7731 T27791 T27790 pobj primers,with
R7732 T27792 T27791 amod specific,primers
R7733 T27793 T27792 prep for,specific
R7734 T27794 T27793 pobj Dmrt7,for
R7735 T27795 T27796 punct (,row
R7736 T27796 T27794 parataxis row,Dmrt7
R7737 T27797 T27796 amod top,row
R7738 T27798 T27796 punct ),row
R7739 T27799 T27794 cc and,Dmrt7
R7740 T27800 T27801 compound β,actin
R7741 T27801 T27794 conj actin,Dmrt7
R7742 T27802 T27801 punct -,actin
R7743 T27803 T27804 punct (,row
R7744 T27804 T27801 parataxis row,actin
R7745 T27805 T27804 amod bottom,row
R7746 T27806 T27804 punct ),row
R7747 T27807 T27785 punct .,amplified
R7748 T27809 T27810 punct (,B
R7749 T27810 T27811 meta B,expression
R7750 T27812 T27810 punct ),B
R7751 T27813 T27811 compound Dmrt7,expression
R7752 T27814 T27811 compound mRNA,expression
R7753 T27815 T27811 prep during,expression
R7754 T27816 T27817 det the,round
R7755 T27817 T27815 pobj round,during
R7756 T27818 T27817 amod first,round
R7757 T27819 T27817 prep of,round
R7758 T27820 T27819 pobj spermatogenesis,of
R7759 T27821 T27811 punct .,expression
R7760 T27823 T27824 nsubjpass cDNAs,amplified
R7761 T27825 T27823 acl obtained,cDNAs
R7762 T27826 T27825 prep from,obtained
R7763 T27827 T27826 pobj testis,from
R7764 T27828 T27825 prep at,obtained
R7765 T27829 T27830 det the,days
R7766 T27830 T27828 pobj days,at
R7767 T27831 T27830 amod indicated,days
R7768 T27832 T27830 prep after,days
R7769 T27833 T27832 pobj birth,after
R7770 T27834 T27824 auxpass were,amplified
R7771 T27835 T27824 prep as,amplified
R7772 T27836 T27835 prep in,as
R7773 T27837 T27836 punct (,in
R7774 T27838 T27836 pobj A,in
R7775 T27839 T27824 punct ),amplified
R7776 T27840 T27824 punct .,amplified
R7777 T27842 T27843 punct (,C
R7778 T27843 T27844 meta C,expression
R7779 T27845 T27843 punct ),C
R7780 T27846 T27844 compound DMRT7,expression
R7781 T27847 T27844 compound protein,expression
R7782 T27848 T27844 punct .,expression
R7783 T27851 T27850 prep of,Immunofluorescence
R7784 T27852 T27853 compound testis,sections
R7785 T27853 T27851 pobj sections,of
R7786 T27854 T27853 prep from,sections
R7787 T27855 T27856 nummod 6,wk
R7788 T27856 T27858 npadvmod wk,old
R7789 T27857 T27856 punct -,wk
R7790 T27858 T27860 amod old,male
R7791 T27859 T27858 punct -,old
R7792 T27860 T27854 pobj male,from
R7793 T27861 T27850 acl stained,Immunofluorescence
R7794 T27862 T27861 prep with,stained
R7795 T27863 T27862 pobj antibody,with
R7796 T27864 T27863 prep to,antibody
R7797 T27865 T27864 pobj DMRT7,to
R7798 T27866 T27867 punct (,green
R7799 T27867 T27865 parataxis green,DMRT7
R7800 T27868 T27867 punct ),green
R7801 T27869 T27865 cc and,DMRT7
R7802 T27870 T27865 conj DAPI,DMRT7
R7803 T27871 T27872 punct (,blue
R7804 T27872 T27870 parataxis blue,DAPI
R7805 T27873 T27872 punct ),blue
R7806 T27874 T27850 punct .,Immunofluorescence
R7807 T27876 T27877 punct (,D
R7808 T27877 T27878 meta D,localization
R7809 T27879 T27878 punct ),localization
R7810 T27880 T27878 nmod DMRT7,localization
R7811 T27881 T27878 amod subcellular,localization
R7812 T27882 T27878 prep to,localization
R7813 T27883 T27884 compound XY,body
R7814 T27884 T27882 pobj body,to
R7815 T27885 T27878 punct .,localization
R7816 T27887 T27888 compound Testis,sections
R7817 T27889 T27888 prep from,sections
R7818 T27890 T27891 nummod 6,wk
R7819 T27891 T27893 npadvmod wk,old
R7820 T27892 T27891 punct -,wk
R7821 T27893 T27895 amod old,male
R7822 T27894 T27893 punct -,old
R7823 T27895 T27889 pobj male,from
R7824 T27896 T27888 acl stained,sections
R7825 T27897 T27896 prep with,stained
R7826 T27898 T27897 pobj antibodies,with
R7827 T27899 T27898 prep to,antibodies
R7828 T27900 T27899 pobj DMRT7,to
R7829 T27901 T27902 punct (,red
R7830 T27902 T27900 parataxis red,DMRT7
R7831 T27903 T27902 punct ),red
R7832 T27904 T27900 cc and,DMRT7
R7833 T27905 T27900 conj SUMO,DMRT7
R7834 T27906 T27905 punct -,SUMO
R7835 T27907 T27905 nummod 1,SUMO
R7836 T27908 T27909 punct (,green
R7837 T27909 T27905 parataxis green,SUMO
R7838 T27910 T27909 punct ),green
R7839 T27911 T27888 punct .,sections
R7840 T27913 T27914 nsubjpass SUMO,localized
R7841 T27915 T27913 punct -,SUMO
R7842 T27916 T27913 nummod 1,SUMO
R7843 T27917 T27914 auxpass is,localized
R7844 T27918 T27914 prep to,localized
R7845 T27919 T27920 det the,body
R7846 T27920 T27918 pobj body,to
R7847 T27921 T27920 compound XY,body
R7848 T27922 T27914 punct .,localized
R7849 T27924 T27925 amod Right-most,panel
R7850 T27925 T27926 nsubj panel,shows
R7851 T27927 T27926 dobj merge,shows
R7852 T27928 T27927 prep of,merge
R7853 T27929 T27930 amod other,panels
R7854 T27930 T27928 pobj panels,of
R7855 T27931 T27930 nummod two,panels
R7856 T27932 T27926 punct .,shows
R7857 T27934 T27935 nsubj Inserts,show
R7858 T27936 T27937 amod higher,magnification
R7859 T27937 T27935 dobj magnification,show
R7860 T27938 T27937 prep of,magnification
R7861 T27939 T27940 compound pachytene,spermatocytes
R7862 T27940 T27938 pobj spermatocytes,of
R7863 T27941 T27940 prep with,spermatocytes
R7864 T27942 T27943 compound XY,bodies
R7865 T27943 T27941 pobj bodies,with
R7866 T27944 T27935 punct .,show

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27681 10-20 GO:0010467 denotes Expression
T27682 24-29 PR:000006549 denotes Dmrt7
T27683 70-75 PR:000006549 denotes Dmrt7
T27684 90-96 UBERON:0000062 denotes organs
T27685 100-105 UBERON:0007023 denotes adult
T27686 106-111 NCBITaxon:10088 denotes mouse
T27687 128-133 UBERON:0000062 denotes organ
T27688 153-160 SO:0000112 denotes primers
T27689 174-179 PR:000006549 denotes Dmrt7
T27690 194-201 PR:000003676 denotes β-actin
T27691 220-225 PR:000006549 denotes Dmrt7
T27692 231-241 GO:0010467 denotes expression
T27693 268-283 GO:0007283 denotes spermatogenesis
T27694 305-311 UBERON:0000473 denotes testis
T27695 340-345 GO:0007567 denotes birth
T27696 376-381 PR:000006549 denotes DMRT7
T27697 390-400 GO:0010467 denotes expression
T27698 424-430 UBERON:0000473 denotes testis
T27699 472-480 GO:0042571 denotes antibody
T27700 484-489 PR:000006549 denotes DMRT7
T27701 502-506 CHEBI:51231 denotes DAPI
T27702 519-524 PR:000006549 denotes DMRT7
T27703 553-560 GO:0001741 denotes XY body
T27704 562-568 UBERON:0000473 denotes Testis
T27705 610-620 GO:0042571 denotes antibodies
T27706 624-629 PR:000006549 denotes DMRT7
T27707 640-646 PR:000015829 denotes SUMO-1
T27708 656-662 PR:000015829 denotes SUMO-1
T27709 683-690 GO:0001741 denotes XY body
T27710 779-788 GO:0000239 denotes pachytene
T27711 789-802 CL:0000017 denotes spermatocytes
T27712 808-817 GO:0001741 denotes XY bodies

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27715 30-34 CHEBI_SO_EXT:mRNA denotes mRNA
T27713 10-20 GO:0010467 denotes Expression
T27714 24-29 PR_EXT:000006549 denotes Dmrt7
T27716 39-46 CHEBI_PR_EXT:protein denotes Protein
T27717 51-53 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T27718 70-75 PR_EXT:000006549 denotes Dmrt7
T27719 76-80 CHEBI_SO_EXT:mRNA denotes mRNA
T27720 90-96 UBERON:0000062 denotes organs
T27721 100-105 UBERON:0007023 denotes adult
T27722 106-111 NCBITaxon:10088 denotes mouse
T27723 113-117 SO_EXT:cDNA denotes cDNA
T27724 128-133 UBERON:0000062 denotes organ
T27725 153-160 SO_EXT:0000112 denotes primers
T27726 174-179 PR_EXT:000006549 denotes Dmrt7
T27727 194-201 PR_EXT:000003676 denotes β-actin
T27728 220-225 PR_EXT:000006549 denotes Dmrt7
T27729 226-230 CHEBI_SO_EXT:mRNA denotes mRNA
T27730 231-241 GO:0010467 denotes expression
T27731 268-283 GO:0007283 denotes spermatogenesis
T27732 285-290 SO_EXT:cDNA denotes cDNAs
T27733 305-311 UBERON:0000473 denotes testis
T27734 340-345 GO:0007567 denotes birth
T27735 376-381 PR_EXT:000006549 denotes DMRT7
T27736 382-389 CHEBI_PR_EXT:protein denotes protein
T27737 390-400 GO:0010467 denotes expression
T27738 424-430 UBERON:0000473 denotes testis
T27739 454-458 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T27740 472-480 GO:0042571 denotes antibody
T27741 484-489 PR_EXT:000006549 denotes DMRT7
T27742 502-506 CHEBI:51231 denotes DAPI
T27743 519-524 PR_EXT:000006549 denotes DMRT7
T27744 525-536 GO_UBERON_EXT:cellular_component_or_cell_part denotes subcellular
T27745 528-536 CL_GO_EXT:cell denotes cellular
T27746 537-549 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T27747 553-560 GO:0001741 denotes XY body
T27748 562-568 UBERON:0000473 denotes Testis
T27749 592-596 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T27750 610-620 GO:0042571 denotes antibodies
T27751 624-629 PR_EXT:000006549 denotes DMRT7
T27752 640-646 PR_EXT:000015829 denotes SUMO-1
T27753 656-662 PR_EXT:000015829 denotes SUMO-1
T27754 666-675 GO_PATO_EXT:biological_localization_process_or_quality denotes localized
T27755 683-690 GO:0001741 denotes XY body
T27756 779-788 GO:0000239 denotes pachytene
T27757 789-802 CL:0000017 denotes spermatocytes
T27758 808-817 GO:0001741 denotes XY bodies