PMC:1794230 / 56522-57115 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1794230","sourcedb":"PMC","sourceid":"1794230","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1794230","text":"E. coli Crp and PurR binding sites that have been experimentally identified by DNase I footprinting were extracted from the literature and available databases, RegulonDB [47] and DPInteract [48]. The 87 Crp sites (from 65 E. coli intergenic regions) and 22 PurR sites (from 20 E. coli intergenic regions), were aligned using the Gibbs Recursive Sampler [49] specifying palindromic models (total width of 16–24 bp), to generate a PurR motif (Figure 7) and a Crp motif (Figure 1). These figures show both the nucleotide equilibrium and the information content for each position of the motif [9].","tracks":[{"project":"2_test","denotations":[{"id":"17244358-14681419-1689336","span":{"begin":171,"end":173},"obj":"14681419"},{"id":"17244358-9813115-1689337","span":{"begin":191,"end":193},"obj":"9813115"},{"id":"17244358-12824370-1689338","span":{"begin":354,"end":356},"obj":"12824370"},{"id":"17244358-3525846-1689339","span":{"begin":590,"end":591},"obj":"3525846"}],"attributes":[{"subj":"17244358-14681419-1689336","pred":"source","obj":"2_test"},{"subj":"17244358-9813115-1689337","pred":"source","obj":"2_test"},{"subj":"17244358-12824370-1689338","pred":"source","obj":"2_test"},{"subj":"17244358-3525846-1689339","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#ec93e4","default":true}]}]}}