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PMC:1713256 / 53834-54254 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12757 0-10 NN denotes Generation
T12758 11-13 IN denotes of
T12759 14-18 NN denotes Bmp2
T12760 40-44 JJ denotes null
T12761 19-22 CC denotes and
T12762 23-27 NN denotes Bmp4
T12763 28-39 JJ denotes conditional
T12764 45-51 NN denotes allele
T12765 51-52 . denotes .
T12766 52-192 sentence denotes Mice carrying floxed Bmp2 allele were available through a material transfer agreement between Harvard University and Wyeth Pharmaceuticals.
T12767 53-57 NNS denotes Mice
T12768 86-90 VBD denotes were
T12769 58-66 VBG denotes carrying
T12770 67-73 VBN denotes floxed
T12771 79-85 NN denotes allele
T12772 74-78 NN denotes Bmp2
T12773 91-100 JJ denotes available
T12774 101-108 IN denotes through
T12775 109-110 DT denotes a
T12776 129-138 NN denotes agreement
T12777 111-119 NN denotes material
T12778 120-128 NN denotes transfer
T12779 139-146 IN denotes between
T12780 147-154 NNP denotes Harvard
T12781 155-165 NNP denotes University
T12782 166-169 CC denotes and
T12783 170-175 NNP denotes Wyeth
T12784 176-191 NNP denotes Pharmaceuticals
T12785 191-192 . denotes .
T12786 192-305 sentence denotes In these mice, LoxP sites were integrated to excise the entire protein-coding region in exon 3 of the Bmp2 gene.
T12787 193-195 IN denotes In
T12788 224-234 VBN denotes integrated
T12789 196-201 DT denotes these
T12790 202-206 NNS denotes mice
T12791 206-208 , denotes ,
T12792 208-212 NN denotes LoxP
T12793 213-218 NNS denotes sites
T12794 219-223 VBD denotes were
T12795 235-237 TO denotes to
T12796 238-244 VB denotes excise
T12797 245-248 DT denotes the
T12798 271-277 NN denotes region
T12799 249-255 JJ denotes entire
T12800 256-263 NN denotes protein
T12801 264-270 VBG denotes coding
T12802 263-264 HYPH denotes -
T12803 278-280 IN denotes in
T12804 281-285 NN denotes exon
T12805 286-287 CD denotes 3
T12806 288-290 IN denotes of
T12807 291-294 DT denotes the
T12808 300-304 NN denotes gene
T12809 295-299 NN denotes Bmp2
T12810 304-305 . denotes .
T12811 305-371 sentence denotes Generation of Bmp4 conditional allele has been described [16,55].
T12812 306-316 NN denotes Generation
T12813 353-362 VBN denotes described
T12814 317-319 IN denotes of
T12815 320-324 NN denotes Bmp4
T12816 337-343 NN denotes allele
T12817 325-336 JJ denotes conditional
T12818 344-347 VBZ denotes has
T12819 348-352 VBN denotes been
T12820 363-364 -LRB- denotes [
T12821 367-369 CD denotes 55
T12822 364-366 CD denotes 16
T12823 366-367 , denotes ,
T12824 369-370 -RRB- denotes ]
T12825 370-371 . denotes .
T12826 371-420 sentence denotes The Prx1::cre transgene has been described [32].
T12827 372-375 DT denotes The
T12828 386-395 NN denotes transgene
T12829 376-380 NN denotes Prx1
T12830 382-385 NN denotes cre
T12831 380-381 HYPH denotes :
T12832 381-382 HYPH denotes :
T12833 405-414 VBN denotes described
T12834 396-399 VBZ denotes has
T12835 400-404 VBN denotes been
T12836 415-416 -LRB- denotes [
T12837 416-418 CD denotes 32
T12838 418-419 -RRB- denotes ]
T12839 419-420 . denotes .
R8337 T12758 T12757 prep of,Generation
R8338 T12759 T12760 npadvmod Bmp2,null
R8339 T12760 T12764 amod null,allele
R8340 T12761 T12759 cc and,Bmp2
R8341 T12762 T12759 conj Bmp4,Bmp2
R8342 T12763 T12760 amod conditional,null
R8343 T12764 T12758 pobj allele,of
R8344 T12765 T12757 punct .,Generation
R8345 T12767 T12768 nsubj Mice,were
R8346 T12769 T12767 acl carrying,Mice
R8347 T12770 T12771 amod floxed,allele
R8348 T12771 T12769 dobj allele,carrying
R8349 T12772 T12771 compound Bmp2,allele
R8350 T12773 T12768 acomp available,were
R8351 T12774 T12768 prep through,were
R8352 T12775 T12776 det a,agreement
R8353 T12776 T12774 pobj agreement,through
R8354 T12777 T12776 compound material,agreement
R8355 T12778 T12776 compound transfer,agreement
R8356 T12779 T12776 prep between,agreement
R8357 T12780 T12781 compound Harvard,University
R8358 T12781 T12779 pobj University,between
R8359 T12782 T12781 cc and,University
R8360 T12783 T12784 compound Wyeth,Pharmaceuticals
R8361 T12784 T12781 conj Pharmaceuticals,University
R8362 T12785 T12768 punct .,were
R8363 T12787 T12788 prep In,integrated
R8364 T12789 T12790 det these,mice
R8365 T12790 T12787 pobj mice,In
R8366 T12791 T12788 punct ", ",integrated
R8367 T12792 T12793 compound LoxP,sites
R8368 T12793 T12788 nsubjpass sites,integrated
R8369 T12794 T12788 auxpass were,integrated
R8370 T12795 T12796 aux to,excise
R8371 T12796 T12788 advcl excise,integrated
R8372 T12797 T12798 det the,region
R8373 T12798 T12796 dobj region,excise
R8374 T12799 T12798 amod entire,region
R8375 T12800 T12801 npadvmod protein,coding
R8376 T12801 T12798 amod coding,region
R8377 T12802 T12801 punct -,coding
R8378 T12803 T12798 prep in,region
R8379 T12804 T12803 pobj exon,in
R8380 T12805 T12804 nummod 3,exon
R8381 T12806 T12804 prep of,exon
R8382 T12807 T12808 det the,gene
R8383 T12808 T12806 pobj gene,of
R8384 T12809 T12808 compound Bmp2,gene
R8385 T12810 T12788 punct .,integrated
R8386 T12812 T12813 nsubjpass Generation,described
R8387 T12814 T12812 prep of,Generation
R8388 T12815 T12816 nmod Bmp4,allele
R8389 T12816 T12814 pobj allele,of
R8390 T12817 T12816 amod conditional,allele
R8391 T12818 T12813 aux has,described
R8392 T12819 T12813 auxpass been,described
R8393 T12820 T12821 punct [,55
R8394 T12821 T12813 parataxis 55,described
R8395 T12822 T12821 nummod 16,55
R8396 T12823 T12821 punct ",",55
R8397 T12824 T12821 punct ],55
R8398 T12825 T12813 punct .,described
R8399 T12827 T12828 det The,transgene
R8400 T12828 T12833 nsubjpass transgene,described
R8401 T12829 T12830 compound Prx1,cre
R8402 T12830 T12828 compound cre,transgene
R8403 T12831 T12830 punct :,cre
R8404 T12832 T12830 punct :,cre
R8405 T12834 T12833 aux has,described
R8406 T12835 T12833 auxpass been,described
R8407 T12836 T12837 punct [,32
R8408 T12837 T12833 parataxis 32,described
R8409 T12838 T12837 punct ],32
R8410 T12839 T12833 punct .,described

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12735 14-18 PR_EXT:000000164 denotes Bmp2
T12736 23-27 PR_EXT:000000165 denotes Bmp4
T12737 40-44 SO_EXT:sequence_nullness denotes null
T12738 45-51 SO_EXT:0001023 denotes allele
T12739 53-57 NCBITaxon:10088 denotes Mice
T12740 67-73 SO:0000359 denotes floxed
T12741 74-78 PR_EXT:000000164 denotes Bmp2
T12742 79-85 SO_EXT:0001023 denotes allele
T12743 120-128 GO_EXT:biological_movement_or_translocation_process denotes transfer
T12744 176-191 CHEBI_EXT:52217 denotes Pharmaceuticals
T12745 202-206 NCBITaxon:10088 denotes mice
T12746 208-218 SO_EXT:0000346 denotes LoxP sites
T12747 238-244 SO_EXT:sequence_deletion_process denotes excise
T12748 256-263 CHEBI_PR_EXT:protein denotes protein
T12749 256-270 SO:0000010 denotes protein-coding
T12750 264-285 SO_EXT:0001215 denotes coding region in exon
T12751 295-299 PR_EXT:000000164 denotes Bmp2
T12752 300-304 SO_EXT:0000704 denotes gene
T12753 320-324 PR_EXT:000000165 denotes Bmp4
T12754 337-343 SO_EXT:0001023 denotes allele
T12755 376-380 PR_EXT:000013316 denotes Prx1
T12756 386-395 SO_EXT:0000902 denotes transgene

2_test

Id Subject Object Predicate Lexical cue
17194222-15581864-85946896 364-366 15581864 denotes 16
17194222-15070745-85946897 367-369 15070745 denotes 55
17194222-12112875-85946898 416-418 12112875 denotes 32
T73507 364-366 15581864 denotes 16
T87372 367-369 15070745 denotes 55
T6355 416-418 12112875 denotes 32

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12717 14-18 PR:000000164 denotes Bmp2
T12718 23-27 PR:000000165 denotes Bmp4
T12719 45-51 SO:0001023 denotes allele
T12720 53-57 NCBITaxon:10088 denotes Mice
T12721 67-73 SO:0000359 denotes floxed
T12722 74-78 PR:000000164 denotes Bmp2
T12723 79-85 SO:0001023 denotes allele
T12724 176-191 CHEBI:52217 denotes Pharmaceuticals
T12725 202-206 NCBITaxon:10088 denotes mice
T12726 208-218 SO:0000346 denotes LoxP sites
T12727 256-270 SO:0000010 denotes protein-coding
T12728 264-285 SO:0001215 denotes coding region in exon
T12729 295-299 PR:000000164 denotes Bmp2
T12730 300-304 SO:0000704 denotes gene
T12731 320-324 PR:000000165 denotes Bmp4
T12732 337-343 SO:0001023 denotes allele
T12733 376-380 PR:000013316 denotes Prx1
T12734 386-395 SO:0000902 denotes transgene