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PMC:1713256 / 27564-28148 JSONTXT

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Id Subject Object Predicate Lexical cue
T6731 0-2 TO denotes To
T6732 3-10 VB denotes examine
T6733 80-88 VBN denotes examined
T6734 11-14 DT denotes the
T6735 15-19 NN denotes loss
T6736 20-22 IN denotes of
T6737 23-29 NNS denotes digits
T6738 30-34 RBR denotes more
T6739 35-42 RB denotes closely
T6740 42-44 , denotes ,
T6741 44-48 NN denotes BMP2
T6742 50-54 NN denotes BMP4
T6743 48-50 , denotes ,
T6744 55-64 JJ denotes deficient
T6745 54-55 HYPH denotes –
T6746 70-74 NNS denotes buds
T6747 65-69 NN denotes limb
T6748 75-79 VBD denotes were
T6749 89-95 IN denotes during
T6750 96-105 NN denotes cartilage
T6751 119-124 NN denotes phase
T6752 106-118 NN denotes condensation
T6753 125-127 IN denotes of
T6754 128-131 DT denotes the
T6755 138-142 NNS denotes rays
T6756 132-137 NN denotes digit
T6757 143-145 IN denotes at
T6758 146-151 NN denotes E12.5
T6759 151-152 . denotes .
T6760 152-356 sentence denotes In wild-type limb buds the condensation of all five digits can be visualized at this stage by in situ hybridization with a probe directed against Sox9, the earliest known chondrogenic marker (Figure 3I).
T6761 153-155 IN denotes In
T6762 219-229 VBN denotes visualized
T6763 156-160 JJ denotes wild
T6764 161-165 NN denotes type
T6765 160-161 HYPH denotes -
T6766 171-175 NNS denotes buds
T6767 166-170 NN denotes limb
T6768 176-179 DT denotes the
T6769 180-192 NN denotes condensation
T6770 193-195 IN denotes of
T6771 196-199 DT denotes all
T6772 205-211 NNS denotes digits
T6773 200-204 CD denotes five
T6774 212-215 MD denotes can
T6775 216-218 VB denotes be
T6776 230-232 IN denotes at
T6777 233-237 DT denotes this
T6778 238-243 NN denotes stage
T6779 244-246 IN denotes by
T6780 247-249 FW denotes in
T6781 250-254 FW denotes situ
T6782 255-268 NN denotes hybridization
T6783 269-273 IN denotes with
T6784 274-275 DT denotes a
T6785 276-281 NN denotes probe
T6786 282-290 VBN denotes directed
T6787 291-298 IN denotes against
T6788 299-303 NN denotes Sox9
T6789 303-305 , denotes ,
T6790 305-308 DT denotes the
T6791 337-343 NN denotes marker
T6792 309-317 JJS denotes earliest
T6793 318-323 VBN denotes known
T6794 324-336 JJ denotes chondrogenic
T6795 344-345 -LRB- denotes (
T6796 352-354 NN denotes 3I
T6797 345-351 NN denotes Figure
T6798 354-355 -RRB- denotes )
T6799 355-356 . denotes .
T6800 356-584 sentence denotes However, in Bmp2C/C; Bmp4C/C; Prx1::cre limb buds at E12.5, Sox9 only detects primordia of the anterior three digits of the forelimb, indicating a failure in the formation of posterior digits at this earliest stage (Figure 3J).
T6801 357-364 RB denotes However
T6802 427-434 VBZ denotes detects
T6803 364-366 , denotes ,
T6804 366-368 IN denotes in
T6805 369-374 NN denotes Bmp2C
T6806 375-376 NN denotes C
T6807 374-375 HYPH denotes /
T6808 402-406 NNS denotes buds
T6809 376-377 : denotes ;
T6810 378-383 NN denotes Bmp4C
T6811 384-385 NN denotes C
T6812 383-384 HYPH denotes /
T6813 385-386 : denotes ;
T6814 387-391 NN denotes Prx1
T6815 393-396 NN denotes cre
T6816 391-392 HYPH denotes :
T6817 392-393 HYPH denotes :
T6818 397-401 NN denotes limb
T6819 407-409 IN denotes at
T6820 410-415 NN denotes E12.5
T6821 415-417 , denotes ,
T6822 417-421 NN denotes Sox9
T6823 422-426 RB denotes only
T6824 435-444 NNS denotes primordia
T6825 445-447 IN denotes of
T6826 448-451 DT denotes the
T6827 467-473 NNS denotes digits
T6828 452-460 JJ denotes anterior
T6829 461-466 CD denotes three
T6830 474-476 IN denotes of
T6831 477-480 DT denotes the
T6832 481-489 NN denotes forelimb
T6833 489-491 , denotes ,
T6834 491-501 VBG denotes indicating
T6835 502-503 DT denotes a
T6836 504-511 NN denotes failure
T6837 512-514 IN denotes in
T6838 515-518 DT denotes the
T6839 519-528 NN denotes formation
T6840 529-531 IN denotes of
T6841 532-541 JJ denotes posterior
T6842 542-548 NNS denotes digits
T6843 549-551 IN denotes at
T6844 552-556 DT denotes this
T6845 566-571 NN denotes stage
T6846 557-565 JJS denotes earliest
T6847 572-573 -LRB- denotes (
T6848 580-582 NN denotes 3J
T6849 573-579 NN denotes Figure
T6850 582-583 -RRB- denotes )
T6851 583-584 . denotes .
R4342 T6731 T6732 aux To,examine
R4343 T6732 T6733 advcl examine,examined
R4344 T6734 T6735 det the,loss
R4345 T6735 T6732 dobj loss,examine
R4346 T6736 T6735 prep of,loss
R4347 T6737 T6736 pobj digits,of
R4348 T6738 T6739 advmod more,closely
R4349 T6739 T6732 advmod closely,examine
R4350 T6740 T6733 punct ", ",examined
R4351 T6741 T6742 nmod BMP2,BMP4
R4352 T6742 T6744 npadvmod BMP4,deficient
R4353 T6743 T6742 punct ", ",BMP4
R4354 T6744 T6746 amod deficient,buds
R4355 T6745 T6744 punct –,deficient
R4356 T6746 T6733 nsubjpass buds,examined
R4357 T6747 T6746 compound limb,buds
R4358 T6748 T6733 auxpass were,examined
R4359 T6749 T6733 prep during,examined
R4360 T6750 T6751 compound cartilage,phase
R4361 T6751 T6749 pobj phase,during
R4362 T6752 T6751 compound condensation,phase
R4363 T6753 T6751 prep of,phase
R4364 T6754 T6755 det the,rays
R4365 T6755 T6753 pobj rays,of
R4366 T6756 T6755 compound digit,rays
R4367 T6757 T6733 prep at,examined
R4368 T6758 T6757 pobj E12.5,at
R4369 T6759 T6733 punct .,examined
R4370 T6761 T6762 prep In,visualized
R4371 T6763 T6764 amod wild,type
R4372 T6764 T6766 compound type,buds
R4373 T6765 T6764 punct -,type
R4374 T6766 T6761 pobj buds,In
R4375 T6767 T6766 compound limb,buds
R4376 T6768 T6769 det the,condensation
R4377 T6769 T6762 nsubjpass condensation,visualized
R4378 T6770 T6769 prep of,condensation
R4379 T6771 T6772 det all,digits
R4380 T6772 T6770 pobj digits,of
R4381 T6773 T6772 nummod five,digits
R4382 T6774 T6762 aux can,visualized
R4383 T6775 T6762 auxpass be,visualized
R4384 T6776 T6762 prep at,visualized
R4385 T6777 T6778 det this,stage
R4386 T6778 T6776 pobj stage,at
R4387 T6779 T6762 prep by,visualized
R4388 T6780 T6781 advmod in,situ
R4389 T6781 T6782 amod situ,hybridization
R4390 T6782 T6779 pobj hybridization,by
R4391 T6783 T6762 prep with,visualized
R4392 T6784 T6785 det a,probe
R4393 T6785 T6783 pobj probe,with
R4394 T6786 T6785 acl directed,probe
R4395 T6787 T6786 prep against,directed
R4396 T6788 T6787 pobj Sox9,against
R4397 T6789 T6788 punct ", ",Sox9
R4398 T6790 T6791 det the,marker
R4399 T6791 T6788 appos marker,Sox9
R4400 T6792 T6791 amod earliest,marker
R4401 T6793 T6791 amod known,marker
R4402 T6794 T6791 amod chondrogenic,marker
R4403 T6795 T6796 punct (,3I
R4404 T6796 T6762 parataxis 3I,visualized
R4405 T6797 T6796 compound Figure,3I
R4406 T6798 T6796 punct ),3I
R4407 T6799 T6762 punct .,visualized
R4408 T6801 T6802 advmod However,detects
R4409 T6803 T6802 punct ", ",detects
R4410 T6804 T6802 prep in,detects
R4411 T6805 T6806 nmod Bmp2C,C
R4412 T6806 T6808 nmod C,buds
R4413 T6807 T6806 punct /,C
R4414 T6808 T6804 pobj buds,in
R4415 T6809 T6806 punct ;,C
R4416 T6810 T6811 compound Bmp4C,C
R4417 T6811 T6806 appos C,C
R4418 T6812 T6811 punct /,C
R4419 T6813 T6806 punct ;,C
R4420 T6814 T6815 compound Prx1,cre
R4421 T6815 T6806 appos cre,C
R4422 T6816 T6815 punct :,cre
R4423 T6817 T6815 punct :,cre
R4424 T6818 T6808 compound limb,buds
R4425 T6819 T6808 prep at,buds
R4426 T6820 T6819 pobj E12.5,at
R4427 T6821 T6802 punct ", ",detects
R4428 T6822 T6802 nsubj Sox9,detects
R4429 T6823 T6802 advmod only,detects
R4430 T6824 T6802 dobj primordia,detects
R4431 T6825 T6824 prep of,primordia
R4432 T6826 T6827 det the,digits
R4433 T6827 T6825 pobj digits,of
R4434 T6828 T6827 amod anterior,digits
R4435 T6829 T6827 nummod three,digits
R4436 T6830 T6827 prep of,digits
R4437 T6831 T6832 det the,forelimb
R4438 T6832 T6830 pobj forelimb,of
R4439 T6833 T6802 punct ", ",detects
R4440 T6834 T6802 advcl indicating,detects
R4441 T6835 T6836 det a,failure
R4442 T6836 T6834 dobj failure,indicating
R4443 T6837 T6836 prep in,failure
R4444 T6838 T6839 det the,formation
R4445 T6839 T6837 pobj formation,in
R4446 T6840 T6839 prep of,formation
R4447 T6841 T6842 amod posterior,digits
R4448 T6842 T6840 pobj digits,of
R4449 T6843 T6834 prep at,indicating
R4450 T6844 T6845 det this,stage
R4451 T6845 T6843 pobj stage,at
R4452 T6846 T6845 amod earliest,stage
R4453 T6847 T6848 punct (,3J
R4454 T6848 T6802 parataxis 3J,detects
R4455 T6849 T6848 compound Figure,3J
R4456 T6850 T6848 punct ),3J
R4457 T6851 T6802 punct .,detects

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5776 23-29 UBERON:0002544 denotes digits
T5777 44-48 PR_EXT:000000164 denotes BMP2
T5778 50-54 PR_EXT:000000165 denotes BMP4
T5779 65-74 UBERON:0004347 denotes limb buds
T5780 96-105 UBERON_EXT:cartilage_element_or_tissue denotes cartilage
T5781 96-118 GO:0001502 denotes cartilage condensation
T5782 132-142 UBERON:5002544 denotes digit rays
T5783 156-165 SO_EXT:wild_type_entity_or_quality denotes wild-type
T5784 166-175 UBERON:0004347 denotes limb buds
T5785 205-211 UBERON:0002544 denotes digits
T5786 255-268 GO:0097617 denotes hybridization
T5787 276-281 CHEBI_SO_EXT:molecular_probe denotes probe
T5788 282-290 GO_EXT:biological_direction_or_guidance denotes directed
T5789 299-303 PR_EXT:000015435 denotes Sox9
T5790 324-336 GO:0051216 denotes chondrogenic
T5791 337-343 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T5792 369-373 PR_EXT:000000164 denotes Bmp2
T5793 378-382 PR_EXT:000000165 denotes Bmp4
T5794 387-391 PR_EXT:000013316 denotes Prx1
T5795 397-406 UBERON:0004347 denotes limb buds
T5796 417-421 PR_EXT:000015435 denotes Sox9
T5797 435-444 UBERON:0001048 denotes primordia
T5798 467-476 _FRAGMENT denotes digits of
T5799 481-489 UBERON:0002389 denotes forelimb
T5800 542-548 UBERON:0002544 denotes digits
R3496 T5799 T5798 _lexicallyChainedTo forelimb,digits of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5577 23-29 UBERON:0002544 denotes digits
T5578 44-48 PR:000000164 denotes BMP2
T5579 50-54 PR:000000165 denotes BMP4
T5580 65-74 UBERON:0004347 denotes limb buds
T5581 96-118 GO:0001502 denotes cartilage condensation
T5582 132-142 UBERON:5002544 denotes digit rays
T5583 166-175 UBERON:0004347 denotes limb buds
T5584 205-211 UBERON:0002544 denotes digits
T5585 255-268 GO:0097617 denotes hybridization
T5586 299-303 PR:000015435 denotes Sox9
T5587 324-336 GO:0051216 denotes chondrogenic
T5588 369-373 PR:000000164 denotes Bmp2
T5589 378-382 PR:000000165 denotes Bmp4
T5590 387-391 PR:000013316 denotes Prx1
T5591 397-406 UBERON:0004347 denotes limb buds
T5592 417-421 PR:000015435 denotes Sox9
T5593 435-444 UBERON:0001048 denotes primordia
T5594 467-476 _FRAGMENT denotes digits of
T5595 481-489 UBERON:0002389 denotes forelimb
T5596 542-548 UBERON:0002544 denotes digits
R3492 T5595 T5594 _lexicallyChainedTo forelimb,digits of