PMC:1698483 / 63167-64152 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1698483","sourcedb":"PMC","sourceid":"1698483","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1698483","text":"Length ranges for simple motifs\nEXMOTIF also allows variation in the lengths of the simple motifs to be found. For example, a motif template may be specified as M1[5,10] M2, |M1| ∈ [2,4], and |M2| ∈ [6,7], which means that we have to consider NN, NNN, and NNNN as the possible templates for M1 and similarly for M2. A straightforward way for handling length ranges is to enumerate exhaustively all the possible sub-templates of T MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBamrtHrhAL1wy0L2yHvtyaeHbnfgDOvwBHrxAJfwnaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaWaaeGaeaaakeaaimaacqWFtepvaaa@3847@ with simple motifs of fixed lengths and then to extract each sub-template separately. Instead, EXMOTIF does an optimized extraction. EXMOTIF reuses the partial pos-lists created when using a depth first search to enumerate and extract the sub-templates.","divisions":[{"label":"title","span":{"begin":0,"end":31}}],"tracks":[]}