PMC:1635699 / 26553-27260 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1635699","sourcedb":"PMC","sourceid":"1635699","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1635699","text":"In [22] we used the BALISCORE, which computes the fraction of identities between a trusted reference alignment and a test alignment, where identity is defined as the averaged sequence identity over all aligned pairs of sequences. Because the original BALISCORE program has certain limitations and peculiarities, e. g. skips all alignment columns with more than 20 % gaps, we instead used a modified version of COMPALIGN [43] called COMPALIGNP, which also calculates the fractional sequence-identity between a trusted alignment and a test alignment. Curve progressions for scores computed by BALISCORE and COMPALIGNP are only marginally shifted. The COMPALIGNP score is called SPS' throughout the manuscript.","tracks":[{"project":"2_test","denotations":[{"id":"17062125-15860779-1688934","span":{"begin":4,"end":6},"obj":"15860779"}],"attributes":[{"subj":"17062125-15860779-1688934","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#93eca0","default":true}]}]}}