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PMC:1635039 / 22244-23279 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T20789 0-10 JJ denotes Pharyngeal
T20790 11-17 NNS denotes organs
T20791 18-22 VBP denotes fail
T20792 23-25 TO denotes to
T20793 26-33 VB denotes migrate
T20794 34-36 IN denotes in
T20795 37-41 NN denotes Alk5
T20796 47-50 NN denotes Cre
T20797 41-42 HYPH denotes /
T20798 42-46 NN denotes Wnt1
T20799 46-47 HYPH denotes -
T20800 51-58 NNS denotes mutants
T20801 58-59 . denotes .
T20802 59-191 sentence denotes At E14.0, the thymus was not detectable in the superior mediastinum (asterisks) in Alk5 mutants (D), when compared to controls (A).
T20803 60-62 IN denotes At
T20804 81-84 VBD denotes was
T20805 63-68 NN denotes E14.0
T20806 68-70 , denotes ,
T20807 70-73 DT denotes the
T20808 74-80 NN denotes thymus
T20809 85-88 RB denotes not
T20810 89-99 JJ denotes detectable
T20811 100-102 IN denotes in
T20812 103-106 DT denotes the
T20813 116-127 NN denotes mediastinum
T20814 107-115 JJ denotes superior
T20815 128-129 -LRB- denotes (
T20816 129-138 NNS denotes asterisks
T20817 138-139 -RRB- denotes )
T20818 140-142 IN denotes in
T20819 143-147 NN denotes Alk5
T20820 148-155 NNS denotes mutants
T20821 156-157 -LRB- denotes (
T20822 157-158 NN denotes D
T20823 158-159 -RRB- denotes )
T20824 159-161 , denotes ,
T20825 161-165 WRB denotes when
T20826 166-174 VBN denotes compared
T20827 175-177 IN denotes to
T20828 178-186 NNS denotes controls
T20829 187-188 -LRB- denotes (
T20830 188-189 NN denotes A
T20831 189-190 -RRB- denotes )
T20832 190-191 . denotes .
T20833 191-404 sentence denotes Serial sectioning revealed that the thymic primordia had failed to descend and were seen bilaterally in the upper pharyngeal region (E, F) surrounded by neural crest derived mesenchyme (blue staining cells in E).
T20834 192-198 JJ denotes Serial
T20835 199-209 NN denotes sectioning
T20836 210-218 VBD denotes revealed
T20837 219-223 IN denotes that
T20838 249-255 VBN denotes failed
T20839 224-227 DT denotes the
T20840 235-244 NNS denotes primordia
T20841 228-234 JJ denotes thymic
T20842 245-248 VBD denotes had
T20843 256-258 TO denotes to
T20844 259-266 VB denotes descend
T20845 267-270 CC denotes and
T20846 271-275 VBD denotes were
T20847 276-280 VBN denotes seen
T20848 281-292 RB denotes bilaterally
T20849 293-295 IN denotes in
T20850 296-299 DT denotes the
T20851 317-323 NN denotes region
T20852 300-305 JJ denotes upper
T20853 306-316 JJ denotes pharyngeal
T20854 324-325 -LRB- denotes (
T20855 328-329 NN denotes F
T20856 325-326 NN denotes E
T20857 326-328 , denotes ,
T20858 329-330 -RRB- denotes )
T20859 331-341 VBN denotes surrounded
T20860 342-344 IN denotes by
T20861 345-351 JJ denotes neural
T20862 352-357 NN denotes crest
T20863 358-365 VBN denotes derived
T20864 366-376 NN denotes mesenchyme
T20865 377-378 -LRB- denotes (
T20866 392-397 NNS denotes cells
T20867 378-382 JJ denotes blue
T20868 383-391 NN denotes staining
T20869 398-400 IN denotes in
T20870 401-402 NN denotes E
T20871 402-403 -RRB- denotes )
T20872 403-404 . denotes .
T20873 404-606 sentence denotes In controls, the parathyroid glands were properly associated with the thyroid glands (arrows in C), while in Alk5 mutants the parathyroid glands were associated with the thymic primordia (arrows in F).
T20874 405-407 IN denotes In
T20875 455-465 VBN denotes associated
T20876 408-416 NNS denotes controls
T20877 416-418 , denotes ,
T20878 418-421 DT denotes the
T20879 434-440 NNS denotes glands
T20880 422-433 JJ denotes parathyroid
T20881 441-445 VBD denotes were
T20882 446-454 RB denotes properly
T20883 466-470 IN denotes with
T20884 471-474 DT denotes the
T20885 483-489 NNS denotes glands
T20886 475-482 JJ denotes thyroid
T20887 490-491 -LRB- denotes (
T20888 491-497 NNS denotes arrows
T20889 498-500 IN denotes in
T20890 501-502 NN denotes C
T20891 502-503 -RRB- denotes )
T20892 503-505 , denotes ,
T20893 505-510 IN denotes while
T20894 555-565 VBN denotes associated
T20895 511-513 IN denotes in
T20896 514-518 NN denotes Alk5
T20897 519-526 NNS denotes mutants
T20898 527-530 DT denotes the
T20899 543-549 NNS denotes glands
T20900 531-542 JJ denotes parathyroid
T20901 550-554 VBD denotes were
T20902 566-570 IN denotes with
T20903 571-574 DT denotes the
T20904 582-591 NNS denotes primordia
T20905 575-581 JJ denotes thymic
T20906 592-593 -LRB- denotes (
T20907 593-599 NNS denotes arrows
T20908 600-602 IN denotes in
T20909 603-604 NN denotes F
T20910 604-605 -RRB- denotes )
T20911 605-606 . denotes .
T20912 606-726 sentence denotes However, both controls and mutants expressed parathyroid hormone (PTH) at comparable levels (blue staining in C and F).
T20913 607-614 RB denotes However
T20914 642-651 VBD denotes expressed
T20915 614-616 , denotes ,
T20916 616-620 DT denotes both
T20917 621-629 NNS denotes controls
T20918 630-633 CC denotes and
T20919 634-641 NNS denotes mutants
T20920 652-663 NN denotes parathyroid
T20921 664-671 NN denotes hormone
T20922 672-673 -LRB- denotes (
T20923 673-676 NN denotes PTH
T20924 676-677 -RRB- denotes )
T20925 678-680 IN denotes at
T20926 681-691 JJ denotes comparable
T20927 692-698 NNS denotes levels
T20928 699-700 -LRB- denotes (
T20929 705-713 NN denotes staining
T20930 700-704 JJ denotes blue
T20931 714-716 IN denotes in
T20932 717-718 NN denotes C
T20933 719-722 CC denotes and
T20934 723-724 NN denotes F
T20935 724-725 -RRB- denotes )
T20936 725-726 . denotes .
T20937 726-912 sentence denotes A and D, hematoxyllin and eosin staining; B and E, R26 R lineage tracing assay – counterstaining with eosin; C and F, section in situ hybridization for PTH – counterstaining with eosin.
T20938 727-728 LS denotes A
T20939 759-767 NN denotes staining
T20940 729-732 CC denotes and
T20941 733-734 LS denotes D
T20942 734-736 , denotes ,
T20943 736-748 NN denotes hematoxyllin
T20944 749-752 CC denotes and
T20945 753-758 NN denotes eosin
T20946 767-768 : denotes ;
T20947 769-770 LS denotes B
T20948 782-783 NN denotes R
T20949 771-774 CC denotes and
T20950 775-776 LS denotes E
T20951 776-778 , denotes ,
T20952 778-781 NN denotes R26
T20953 784-791 NN denotes lineage
T20954 800-805 NN denotes assay
T20955 792-799 NN denotes tracing
T20956 806-807 HYPH denotes –
T20957 808-823 VBG denotes counterstaining
T20958 824-828 IN denotes with
T20959 829-834 NN denotes eosin
T20960 834-835 : denotes ;
T20961 836-837 LS denotes C
T20962 861-874 NN denotes hybridization
T20963 838-841 CC denotes and
T20964 842-843 LS denotes F
T20965 843-845 , denotes ,
T20966 845-852 NN denotes section
T20967 853-855 FW denotes in
T20968 856-860 FW denotes situ
T20969 875-878 IN denotes for
T20970 879-882 NN denotes PTH
T20971 883-884 HYPH denotes –
T20972 885-900 VBG denotes counterstaining
T20973 901-905 IN denotes with
T20974 906-911 NN denotes eosin
T20975 911-912 . denotes .
T20976 912-1035 sentence denotes T, thymus; Th, thyroid; asterisks in D depict the absence of the thymic primordia; asterisks in E and F depict the tongue.
T20977 913-914 NN denotes T
T20978 1017-1023 VBP denotes depict
T20979 914-916 , denotes ,
T20980 916-922 NN denotes thymus
T20981 922-923 : denotes ;
T20982 924-926 NN denotes Th
T20983 926-928 , denotes ,
T20984 928-935 NN denotes thyroid
T20985 935-936 : denotes ;
T20986 937-946 NNS denotes asterisks
T20987 952-958 VBP denotes depict
T20988 947-949 IN denotes in
T20989 950-951 NN denotes D
T20990 959-962 DT denotes the
T20991 963-970 NN denotes absence
T20992 971-973 IN denotes of
T20993 974-977 DT denotes the
T20994 985-994 NNS denotes primordia
T20995 978-984 JJ denotes thymic
T20996 994-995 : denotes ;
T20997 996-1005 NNS denotes asterisks
T20998 1006-1008 IN denotes in
T20999 1009-1010 NN denotes E
T21000 1011-1014 CC denotes and
T21001 1015-1016 NN denotes F
T21002 1024-1027 DT denotes the
T21003 1028-1034 NN denotes tongue
T21004 1034-1035 . denotes .
R6272 T20789 T20790 amod Pharyngeal,organs
R6273 T20790 T20791 nsubj organs,fail
R6274 T20792 T20793 aux to,migrate
R6275 T20793 T20791 xcomp migrate,fail
R6276 T20794 T20793 prep in,migrate
R6277 T20795 T20796 compound Alk5,Cre
R6278 T20796 T20800 compound Cre,mutants
R6279 T20797 T20796 punct /,Cre
R6280 T20798 T20796 compound Wnt1,Cre
R6281 T20799 T20796 punct -,Cre
R6282 T20800 T20794 pobj mutants,in
R6283 T20801 T20791 punct .,fail
R6284 T20803 T20804 prep At,was
R6285 T20805 T20803 pobj E14.0,At
R6286 T20806 T20804 punct ", ",was
R6287 T20807 T20808 det the,thymus
R6288 T20808 T20804 nsubj thymus,was
R6289 T20809 T20804 neg not,was
R6290 T20810 T20804 acomp detectable,was
R6291 T20811 T20804 prep in,was
R6292 T20812 T20813 det the,mediastinum
R6293 T20813 T20811 pobj mediastinum,in
R6294 T20814 T20813 amod superior,mediastinum
R6295 T20815 T20816 punct (,asterisks
R6296 T20816 T20813 parataxis asterisks,mediastinum
R6297 T20817 T20816 punct ),asterisks
R6298 T20818 T20804 prep in,was
R6299 T20819 T20820 compound Alk5,mutants
R6300 T20820 T20818 pobj mutants,in
R6301 T20821 T20822 punct (,D
R6302 T20822 T20820 parataxis D,mutants
R6303 T20823 T20822 punct ),D
R6304 T20824 T20804 punct ", ",was
R6305 T20825 T20826 advmod when,compared
R6306 T20826 T20804 advcl compared,was
R6307 T20827 T20826 prep to,compared
R6308 T20828 T20827 pobj controls,to
R6309 T20829 T20830 punct (,A
R6310 T20830 T20826 parataxis A,compared
R6311 T20831 T20830 punct ),A
R6312 T20832 T20804 punct .,was
R6313 T20834 T20835 amod Serial,sectioning
R6314 T20835 T20836 nsubj sectioning,revealed
R6315 T20837 T20838 mark that,failed
R6316 T20838 T20836 ccomp failed,revealed
R6317 T20839 T20840 det the,primordia
R6318 T20840 T20838 nsubj primordia,failed
R6319 T20841 T20840 amod thymic,primordia
R6320 T20842 T20838 aux had,failed
R6321 T20843 T20844 aux to,descend
R6322 T20844 T20838 xcomp descend,failed
R6323 T20845 T20838 cc and,failed
R6324 T20846 T20847 auxpass were,seen
R6325 T20847 T20838 conj seen,failed
R6326 T20848 T20847 advmod bilaterally,seen
R6327 T20849 T20847 prep in,seen
R6328 T20850 T20851 det the,region
R6329 T20851 T20849 pobj region,in
R6330 T20852 T20853 amod upper,pharyngeal
R6331 T20853 T20851 amod pharyngeal,region
R6332 T20854 T20855 punct (,F
R6333 T20855 T20851 parataxis F,region
R6334 T20856 T20855 nmod E,F
R6335 T20857 T20855 punct ", ",F
R6336 T20858 T20855 punct ),F
R6337 T20859 T20851 acl surrounded,region
R6338 T20860 T20859 agent by,surrounded
R6339 T20861 T20862 amod neural,crest
R6340 T20862 T20863 npadvmod crest,derived
R6341 T20863 T20864 amod derived,mesenchyme
R6342 T20864 T20860 pobj mesenchyme,by
R6343 T20865 T20866 punct (,cells
R6344 T20866 T20859 parataxis cells,surrounded
R6345 T20867 T20866 amod blue,cells
R6346 T20868 T20866 compound staining,cells
R6347 T20869 T20866 prep in,cells
R6348 T20870 T20869 pobj E,in
R6349 T20871 T20866 punct ),cells
R6350 T20872 T20836 punct .,revealed
R6351 T20874 T20875 prep In,associated
R6352 T20876 T20874 pobj controls,In
R6353 T20877 T20875 punct ", ",associated
R6354 T20878 T20879 det the,glands
R6355 T20879 T20875 nsubjpass glands,associated
R6356 T20880 T20879 amod parathyroid,glands
R6357 T20881 T20875 auxpass were,associated
R6358 T20882 T20875 advmod properly,associated
R6359 T20883 T20875 prep with,associated
R6360 T20884 T20885 det the,glands
R6361 T20885 T20883 pobj glands,with
R6362 T20886 T20885 amod thyroid,glands
R6363 T20887 T20888 punct (,arrows
R6364 T20888 T20875 parataxis arrows,associated
R6365 T20889 T20888 prep in,arrows
R6366 T20890 T20889 pobj C,in
R6367 T20891 T20888 punct ),arrows
R6368 T20892 T20875 punct ", ",associated
R6369 T20893 T20894 mark while,associated
R6370 T20894 T20875 advcl associated,associated
R6371 T20895 T20894 prep in,associated
R6372 T20896 T20897 compound Alk5,mutants
R6373 T20897 T20895 pobj mutants,in
R6374 T20898 T20899 det the,glands
R6375 T20899 T20894 nsubjpass glands,associated
R6376 T20900 T20899 amod parathyroid,glands
R6377 T20901 T20894 auxpass were,associated
R6378 T20902 T20894 prep with,associated
R6379 T20903 T20904 det the,primordia
R6380 T20904 T20902 pobj primordia,with
R6381 T20905 T20904 amod thymic,primordia
R6382 T20906 T20907 punct (,arrows
R6383 T20907 T20894 parataxis arrows,associated
R6384 T20908 T20907 prep in,arrows
R6385 T20909 T20908 pobj F,in
R6386 T20910 T20907 punct ),arrows
R6387 T20911 T20875 punct .,associated
R6388 T20913 T20914 advmod However,expressed
R6389 T20915 T20914 punct ", ",expressed
R6390 T20916 T20917 det both,controls
R6391 T20917 T20914 nsubj controls,expressed
R6392 T20918 T20917 cc and,controls
R6393 T20919 T20917 conj mutants,controls
R6394 T20920 T20921 compound parathyroid,hormone
R6395 T20921 T20914 dobj hormone,expressed
R6396 T20922 T20921 punct (,hormone
R6397 T20923 T20921 appos PTH,hormone
R6398 T20924 T20914 punct ),expressed
R6399 T20925 T20914 prep at,expressed
R6400 T20926 T20927 amod comparable,levels
R6401 T20927 T20925 pobj levels,at
R6402 T20928 T20929 punct (,staining
R6403 T20929 T20914 parataxis staining,expressed
R6404 T20930 T20929 amod blue,staining
R6405 T20931 T20929 prep in,staining
R6406 T20932 T20931 pobj C,in
R6407 T20933 T20932 cc and,C
R6408 T20934 T20932 conj F,C
R6409 T20935 T20929 punct ),staining
R6410 T20936 T20914 punct .,expressed
R6411 T20938 T20939 meta A,staining
R6412 T20940 T20938 cc and,A
R6413 T20941 T20938 conj D,A
R6414 T20942 T20939 punct ", ",staining
R6415 T20943 T20939 nmod hematoxyllin,staining
R6416 T20944 T20943 cc and,hematoxyllin
R6417 T20945 T20943 conj eosin,hematoxyllin
R6418 T20946 T20939 punct ;,staining
R6419 T20947 T20948 meta B,R
R6420 T20948 T20939 appos R,staining
R6421 T20949 T20947 cc and,B
R6422 T20950 T20947 conj E,B
R6423 T20951 T20948 punct ", ",R
R6424 T20952 T20948 compound R26,R
R6425 T20953 T20954 compound lineage,assay
R6426 T20954 T20948 appos assay,R
R6427 T20955 T20954 compound tracing,assay
R6428 T20956 T20954 punct –,assay
R6429 T20957 T20954 amod counterstaining,assay
R6430 T20958 T20948 prep with,R
R6431 T20959 T20958 pobj eosin,with
R6432 T20960 T20939 punct ;,staining
R6433 T20961 T20962 meta C,hybridization
R6434 T20962 T20939 appos hybridization,staining
R6435 T20963 T20961 cc and,C
R6436 T20964 T20961 conj F,C
R6437 T20965 T20962 punct ", ",hybridization
R6438 T20966 T20962 nmod section,hybridization
R6439 T20967 T20968 nmod in,situ
R6440 T20968 T20962 nmod situ,hybridization
R6441 T20969 T20962 prep for,hybridization
R6442 T20970 T20969 pobj PTH,for
R6443 T20971 T20970 punct –,PTH
R6444 T20972 T20970 amod counterstaining,PTH
R6445 T20973 T20970 prep with,PTH
R6446 T20974 T20973 pobj eosin,with
R6447 T20975 T20939 punct .,staining
R6448 T20977 T20978 dep T,depict
R6449 T20979 T20977 punct ", ",T
R6450 T20980 T20977 appos thymus,T
R6451 T20981 T20978 punct ;,depict
R6452 T20982 T20978 dep Th,depict
R6453 T20983 T20982 punct ", ",Th
R6454 T20984 T20982 appos thyroid,Th
R6455 T20985 T20978 punct ;,depict
R6456 T20986 T20987 nsubj asterisks,depict
R6457 T20987 T20978 ccomp depict,depict
R6458 T20988 T20986 prep in,asterisks
R6459 T20989 T20988 pobj D,in
R6460 T20990 T20991 det the,absence
R6461 T20991 T20987 dobj absence,depict
R6462 T20992 T20991 prep of,absence
R6463 T20993 T20994 det the,primordia
R6464 T20994 T20992 pobj primordia,of
R6465 T20995 T20994 amod thymic,primordia
R6466 T20996 T20978 punct ;,depict
R6467 T20997 T20978 nsubj asterisks,depict
R6468 T20998 T20997 prep in,asterisks
R6469 T20999 T20998 pobj E,in
R6470 T21000 T20999 cc and,E
R6471 T21001 T20999 conj F,E
R6472 T21002 T21003 det the,tongue
R6473 T21003 T20978 dobj tongue,depict
R6474 T21004 T20978 punct .,depict

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20751 0-10 UBERON:0006562 denotes Pharyngeal
T20752 11-17 UBERON:0000062 denotes organs
T20753 26-33 GO_EXT:biological_movement_or_translocation_process denotes migrate
T20754 37-41 PR_EXT:000000047 denotes Alk5
T20755 42-46 PR_EXT:000017435 denotes Wnt1
T20756 51-58 SO_EXT:sequence_altered_entity denotes mutants
T20757 74-80 UBERON:0002370 denotes thymus
T20758 107-127 UBERON:0008818 denotes superior mediastinum
T20759 143-147 PR_EXT:000000047 denotes Alk5
T20760 148-155 SO_EXT:sequence_altered_entity denotes mutants
T20761 228-244 UBERON:0005562 denotes thymic primordia
T20762 306-316 UBERON:0006562 denotes pharyngeal
T20763 345-376 UBERON:0014387 denotes neural crest derived mesenchyme
T20764 392-397 CL_GO_EXT:cell denotes cells
T20765 422-440 UBERON:0001132 denotes parathyroid glands
T20766 475-489 UBERON:0002046 denotes thyroid glands
T20767 514-518 PR_EXT:000000047 denotes Alk5
T20768 519-526 SO_EXT:sequence_altered_entity denotes mutants
T20769 531-549 UBERON:0001132 denotes parathyroid glands
T20770 575-591 UBERON:0005562 denotes thymic primordia
T20771 634-641 SO_EXT:sequence_altered_entity denotes mutants
T20772 642-651 GO:0010467 denotes expressed
T20773 652-663 UBERON:0001132 denotes parathyroid
T20774 652-671 CHEBI_PR_EXT:parathyroid_hormone denotes parathyroid hormone
T20775 664-671 CHEBI_GO_EXT:hormone denotes hormone
T20776 673-676 CHEBI_PR_EXT:parathyroid_hormone denotes PTH
T20777 736-748 CHEBI:51686 denotes hematoxyllin
T20778 753-758 CHEBI_EXT:eosin denotes eosin
T20779 829-834 CHEBI_EXT:eosin denotes eosin
T20780 861-874 GO:0097617 denotes hybridization
T20781 879-882 CHEBI_PR_EXT:parathyroid_hormone denotes PTH
T20782 906-911 CHEBI_EXT:eosin denotes eosin
T20783 913-914 UBERON:0002370 denotes T
T20784 916-922 UBERON:0002370 denotes thymus
T20785 924-926 UBERON:0002046 denotes Th
T20786 928-935 UBERON:0002046 denotes thyroid
T20787 978-994 UBERON:0005562 denotes thymic primordia
T20788 1028-1034 UBERON:0001723 denotes tongue

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20726 0-10 UBERON:0006562 denotes Pharyngeal
T20727 11-17 UBERON:0000062 denotes organs
T20728 37-41 PR:000000047 denotes Alk5
T20729 42-46 PR:000017435 denotes Wnt1
T20730 74-80 UBERON:0002370 denotes thymus
T20731 107-127 UBERON:0008818 denotes superior mediastinum
T20732 143-147 PR:000000047 denotes Alk5
T20733 228-244 UBERON:0005562 denotes thymic primordia
T20734 306-316 UBERON:0006562 denotes pharyngeal
T20735 345-376 UBERON:0014387 denotes neural crest derived mesenchyme
T20736 422-440 UBERON:0001132 denotes parathyroid glands
T20737 475-489 UBERON:0002046 denotes thyroid glands
T20738 514-518 PR:000000047 denotes Alk5
T20739 531-549 UBERON:0001132 denotes parathyroid glands
T20740 575-591 UBERON:0005562 denotes thymic primordia
T20741 642-651 GO:0010467 denotes expressed
T20742 652-663 UBERON:0001132 denotes parathyroid
T20743 736-748 CHEBI:51686 denotes hematoxyllin
T20744 861-874 GO:0097617 denotes hybridization
T20745 913-914 UBERON:0002370 denotes T
T20746 916-922 UBERON:0002370 denotes thymus
T20747 924-926 UBERON:0002046 denotes Th
T20748 928-935 UBERON:0002046 denotes thyroid
T20749 978-994 UBERON:0005562 denotes thymic primordia
T20750 1028-1034 UBERON:0001723 denotes tongue