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PMC:1630711 / 21322-22401 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T9661 0-5 VBN denotes Given
T9662 113-121 VBD denotes wondered
T9663 6-9 DT denotes the
T9664 16-20 NN denotes role
T9665 10-15 VBN denotes known
T9666 21-23 IN denotes of
T9667 24-27 NN denotes CAF
T9668 27-28 HYPH denotes -
T9669 28-29 CD denotes 1
T9670 30-32 IN denotes in
T9671 33-36 DT denotes the
T9672 37-47 NN denotes deposition
T9673 48-50 IN denotes of
T9674 51-58 NN denotes histone
T9675 59-63 NN denotes H3.1
T9676 64-67 CC denotes and
T9677 68-70 NN denotes H4
T9678 71-81 VBN denotes associated
T9679 82-86 IN denotes with
T9680 87-90 NN denotes DNA
T9681 91-100 NN denotes synthesis
T9682 101-102 -LRB- denotes [
T9683 105-107 CD denotes 12
T9684 102-104 CD denotes 11
T9685 104-105 , denotes ,
T9686 107-108 -RRB- denotes ]
T9687 108-110 , denotes ,
T9688 110-112 PRP denotes we
T9689 122-129 IN denotes whether
T9690 187-194 VB denotes reflect
T9691 130-134 DT denotes this
T9692 135-141 NN denotes defect
T9693 142-144 IN denotes in
T9694 145-151 JJR denotes higher
T9695 152-157 NN denotes order
T9696 151-152 HYPH denotes -
T9697 168-180 NN denotes organization
T9698 158-167 NN denotes chromatin
T9699 181-186 MD denotes could
T9700 195-197 DT denotes an
T9701 219-231 NN denotes organization
T9702 198-206 JJ denotes aberrant
T9703 207-218 JJ denotes nucleosomal
T9704 231-232 . denotes .
T9705 232-459 sentence denotes Using DNase I and micrococcal nuclease (MNase) assays, we could not observe any significant difference between control and p150CAF-1-depleted ES cells at the level of bulk genome chromatin or at pericentric repeats (Figure 5).
T9706 233-238 VBG denotes Using
T9707 301-308 VB denotes observe
T9708 239-244 NN denotes DNase
T9709 245-246 CD denotes I
T9710 247-250 CC denotes and
T9711 251-262 JJ denotes micrococcal
T9712 263-271 NN denotes nuclease
T9713 280-286 NNS denotes assays
T9714 272-273 -LRB- denotes (
T9715 273-278 NN denotes MNase
T9716 278-279 -RRB- denotes )
T9717 286-288 , denotes ,
T9718 288-290 PRP denotes we
T9719 291-296 MD denotes could
T9720 297-300 RB denotes not
T9721 309-312 DT denotes any
T9722 325-335 NN denotes difference
T9723 313-324 JJ denotes significant
T9724 336-343 IN denotes between
T9725 344-351 NN denotes control
T9726 378-383 NNS denotes cells
T9727 352-355 CC denotes and
T9728 356-363 NN denotes p150CAF
T9729 366-374 VBN denotes depleted
T9730 363-364 HYPH denotes -
T9731 364-365 CD denotes 1
T9732 365-366 HYPH denotes -
T9733 375-377 NN denotes ES
T9734 384-386 IN denotes at
T9735 387-390 DT denotes the
T9736 391-396 NN denotes level
T9737 397-399 IN denotes of
T9738 400-404 NN denotes bulk
T9739 412-421 NN denotes chromatin
T9740 405-411 NN denotes genome
T9741 422-424 CC denotes or
T9742 425-427 IN denotes at
T9743 428-439 JJ denotes pericentric
T9744 440-447 NNS denotes repeats
T9745 448-449 -LRB- denotes (
T9746 449-455 NN denotes Figure
T9747 456-457 CD denotes 5
T9748 457-458 -RRB- denotes )
T9749 458-459 . denotes .
T9750 459-642 sentence denotes In a second series of experiments, we compared the association of histone H3 with chromatin in nuclei isolated from cells transfected with control and p150CAF-1 RNAi plasmid vectors.
T9751 460-462 IN denotes In
T9752 498-506 VBD denotes compared
T9753 463-464 DT denotes a
T9754 472-478 NN denotes series
T9755 465-471 JJ denotes second
T9756 479-481 IN denotes of
T9757 482-493 NNS denotes experiments
T9758 493-495 , denotes ,
T9759 495-497 PRP denotes we
T9760 507-510 DT denotes the
T9761 511-522 NN denotes association
T9762 523-525 IN denotes of
T9763 526-533 NN denotes histone
T9764 534-536 NN denotes H3
T9765 537-541 IN denotes with
T9766 542-551 NN denotes chromatin
T9767 552-554 IN denotes in
T9768 555-561 NNS denotes nuclei
T9769 562-570 VBN denotes isolated
T9770 571-575 IN denotes from
T9771 576-581 NNS denotes cells
T9772 582-593 VBN denotes transfected
T9773 594-598 IN denotes with
T9774 599-606 NN denotes control
T9775 634-641 NNS denotes vectors
T9776 607-610 CC denotes and
T9777 611-618 NN denotes p150CAF
T9778 618-619 HYPH denotes -
T9779 619-620 CD denotes 1
T9780 621-625 NN denotes RNAi
T9781 626-633 NN denotes plasmid
T9782 641-642 . denotes .
T9783 642-748 sentence denotes Nuclei were incubated in buffers with different salt concentrations ranging from 100 mM NaCl to 1 M NaCl.
T9784 643-649 NNS denotes Nuclei
T9785 655-664 VBN denotes incubated
T9786 650-654 VBD denotes were
T9787 665-667 IN denotes in
T9788 668-675 NNS denotes buffers
T9789 676-680 IN denotes with
T9790 681-690 JJ denotes different
T9791 696-710 NNS denotes concentrations
T9792 691-695 NN denotes salt
T9793 711-718 VBG denotes ranging
T9794 719-723 IN denotes from
T9795 724-727 CD denotes 100
T9796 728-730 NN denotes mM
T9797 731-735 NN denotes NaCl
T9798 736-738 IN denotes to
T9799 739-740 CD denotes 1
T9800 741-742 NN denotes M
T9801 743-747 NN denotes NaCl
T9802 747-748 . denotes .
T9803 748-913 sentence denotes In all conditions, the amount of histone H3 remaining associated with chromatin was indistinguishable in control and p150CAF-1-depleted ES cells (unpublished data).
T9804 749-751 IN denotes In
T9805 829-832 VBD denotes was
T9806 752-755 DT denotes all
T9807 756-766 NNS denotes conditions
T9808 766-768 , denotes ,
T9809 768-771 DT denotes the
T9810 772-778 NN denotes amount
T9811 779-781 IN denotes of
T9812 782-789 NN denotes histone
T9813 790-792 NN denotes H3
T9814 793-802 VBG denotes remaining
T9815 803-813 VBN denotes associated
T9816 814-818 IN denotes with
T9817 819-828 NN denotes chromatin
T9818 833-850 JJ denotes indistinguishable
T9819 851-853 IN denotes in
T9820 854-861 NN denotes control
T9821 888-893 NNS denotes cells
T9822 862-865 CC denotes and
T9823 866-873 NN denotes p150CAF
T9824 876-884 VBN denotes depleted
T9825 873-874 HYPH denotes -
T9826 874-875 CD denotes 1
T9827 875-876 HYPH denotes -
T9828 885-887 NN denotes ES
T9829 894-895 -LRB- denotes (
T9830 907-911 NNS denotes data
T9831 895-906 JJ denotes unpublished
T9832 911-912 -RRB- denotes )
T9833 912-913 . denotes .
T9834 913-1079 sentence denotes Therefore, the loss of clustering and decondensation of pericentric heterochromatin are unlikely to be the consequence of severe defects in nucleosomal organization.
T9835 914-923 RB denotes Therefore
T9836 998-1001 VBP denotes are
T9837 923-925 , denotes ,
T9838 925-928 DT denotes the
T9839 929-933 NN denotes loss
T9840 934-936 IN denotes of
T9841 937-947 NN denotes clustering
T9842 948-951 CC denotes and
T9843 952-966 NN denotes decondensation
T9844 967-969 IN denotes of
T9845 970-981 JJ denotes pericentric
T9846 982-997 NN denotes heterochromatin
T9847 1002-1010 JJ denotes unlikely
T9848 1011-1013 TO denotes to
T9849 1014-1016 VB denotes be
T9850 1017-1020 DT denotes the
T9851 1021-1032 NN denotes consequence
T9852 1033-1035 IN denotes of
T9853 1036-1042 JJ denotes severe
T9854 1043-1050 NNS denotes defects
T9855 1051-1053 IN denotes in
T9856 1054-1065 JJ denotes nucleosomal
T9857 1066-1078 NN denotes organization
T9858 1078-1079 . denotes .
R2357 T9661 T9662 prep Given,wondered
R2359 T9663 T9664 det the,role
R2360 T9664 T9661 pobj role,Given
R2362 T9665 T9664 amod known,role
R2363 T9666 T9664 prep of,role
R2364 T9667 T9666 pobj CAF,of
R2366 T9668 T9667 punct -,CAF
R2367 T9669 T9667 nummod 1,CAF
R2368 T9670 T9664 prep in,role
R2370 T9671 T9672 det the,deposition
R2371 T9672 T9670 pobj deposition,in
R2372 T9673 T9672 prep of,deposition
R2373 T9674 T9675 compound histone,H3.1
R2375 T9675 T9673 pobj H3.1,of
R2376 T9676 T9675 cc and,H3.1
R2377 T9677 T9675 conj H4,H3.1
R2379 T9678 T9675 acl associated,H3.1
R2380 T9679 T9678 prep with,associated
R2381 T9680 T9681 compound DNA,synthesis
R2383 T9681 T9679 pobj synthesis,with
R2384 T9682 T9683 punct [,12
R2385 T9683 T9664 parataxis 12,role
R2387 T9684 T9683 nummod 11,12
R2388 T9685 T9683 punct ",",12
R2389 T9686 T9683 punct ],12
R2390 T9687 T9662 punct ", ",wondered
R2391 T9688 T9662 nsubj we,wondered
R2392 T9689 T9690 mark whether,reflect
R2393 T9690 T9662 ccomp reflect,wondered
R2394 T9691 T9692 det this,defect
R2396 T9692 T9690 nsubj defect,reflect
R2397 T9693 T9692 prep in,defect
R2398 T9694 T9695 amod higher,order
R2400 T9695 T9697 compound order,organization
R2401 T9696 T9695 punct -,order
R2402 T9697 T9693 pobj organization,in
R2403 T9698 T9697 compound chromatin,organization
R2405 T9699 T9690 aux could,reflect
R2410 T9700 T9701 det an,organization
R2411 T9701 T9690 dobj organization,reflect
R2413 T9702 T9701 amod aberrant,organization
R2414 T9703 T9701 amod nucleosomal,organization
R2415 T9704 T9662 punct .,wondered
R2417 T9706 T9707 advcl Using,observe
R2419 T9708 T9706 dobj DNase,Using
R2420 T9709 T9708 nummod I,DNase
R2422 T9710 T9708 cc and,DNase
R2423 T9711 T9712 amod micrococcal,nuclease
R2424 T9712 T9713 nmod nuclease,assays
R2426 T9713 T9708 conj assays,DNase
R2427 T9714 T9712 punct (,nuclease
R2428 T9715 T9712 appos MNase,nuclease
R2430 T9716 T9713 punct ),assays
R2431 T9717 T9707 punct ", ",observe
R2432 T9718 T9707 nsubj we,observe
R2434 T9719 T9707 aux could,observe
R2436 T9720 T9707 neg not,observe
R2438 T9721 T9722 det any,difference
R2439 T9722 T9707 dobj difference,observe
R2440 T9723 T9722 amod significant,difference
R2441 T9724 T9722 prep between,difference
R2442 T9725 T9726 nmod control,cells
R2444 T9726 T9724 pobj cells,between
R2445 T9727 T9725 cc and,control
R2446 T9728 T9729 npadvmod p150CAF,depleted
R2447 T9729 T9725 conj depleted,control
R2448 T9806 T9807 det all,conditions
R2449 T9730 T9728 punct -,p150CAF
R2450 T9731 T9728 nummod 1,p150CAF
R2451 T9732 T9729 punct -,depleted
R2452 T9733 T9726 compound ES,cells
R2453 T9734 T9707 prep at,observe
R2454 T9735 T9736 det the,level
R2455 T9807 T9804 pobj conditions,In
R2456 T9736 T9734 pobj level,at
R2457 T9737 T9736 prep of,level
R2458 T9738 T9739 compound bulk,chromatin
R2459 T9739 T9737 pobj chromatin,of
R2460 T9808 T9805 punct ", ",was
R2461 T9740 T9739 compound genome,chromatin
R2462 T9741 T9734 cc or,at
R2463 T9809 T9810 det the,amount
R2464 T9742 T9734 conj at,at
R2465 T9810 T9805 nsubj amount,was
R2466 T9743 T9744 amod pericentric,repeats
R2467 T9744 T9742 pobj repeats,at
R2468 T9811 T9810 prep of,amount
R2469 T9745 T9746 punct (,Figure
R2470 T9746 T9707 parataxis Figure,observe
R2471 T9747 T9746 nummod 5,Figure
R2472 T9748 T9746 punct ),Figure
R2473 T9812 T9813 compound histone,H3
R2474 T9749 T9707 punct .,observe
R2475 T9751 T9752 prep In,compared
R2476 T9813 T9811 pobj H3,of
R2477 T9753 T9754 det a,series
R2478 T9814 T9810 acl remaining,amount
R2479 T9754 T9751 pobj series,In
R2480 T9755 T9754 amod second,series
R2481 T9756 T9754 prep of,series
R2482 T9815 T9810 acl associated,amount
R2483 T9757 T9756 pobj experiments,of
R2484 T9758 T9752 punct ", ",compared
R2485 T9759 T9752 nsubj we,compared
R2486 T9816 T9815 prep with,associated
R2487 T9760 T9761 det the,association
R2488 T9761 T9752 dobj association,compared
R2489 T9762 T9761 prep of,association
R2490 T9763 T9764 compound histone,H3
R2491 T9764 T9762 pobj H3,of
R2492 T9817 T9816 pobj chromatin,with
R2493 T9765 T9752 prep with,compared
R2494 T9766 T9765 pobj chromatin,with
R2495 T9767 T9752 prep in,compared
R2496 T9768 T9767 pobj nuclei,in
R2497 T9769 T9768 acl isolated,nuclei
R2498 T9770 T9769 prep from,isolated
R2499 T9771 T9770 pobj cells,from
R2500 T9772 T9771 acl transfected,cells
R2501 T9818 T9805 acomp indistinguishable,was
R2502 T9773 T9772 prep with,transfected
R2503 T9774 T9775 nmod control,vectors
R2504 T9775 T9773 pobj vectors,with
R2505 T9776 T9774 cc and,control
R2506 T9819 T9805 prep in,was
R2507 T9777 T9774 conj p150CAF,control
R2508 T9778 T9777 punct -,p150CAF
R2509 T9779 T9777 nummod 1,p150CAF
R2510 T9820 T9821 nmod control,cells
R2511 T9780 T9775 compound RNAi,vectors
R2512 T9781 T9775 compound plasmid,vectors
R2513 T9782 T9752 punct .,compared
R2514 T9821 T9819 pobj cells,in
R2515 T9784 T9785 nsubjpass Nuclei,incubated
R2516 T9786 T9785 auxpass were,incubated
R2517 T9822 T9820 cc and,control
R2518 T9787 T9785 prep in,incubated
R2519 T9788 T9787 pobj buffers,in
R2520 T9823 T9824 npadvmod p150CAF,depleted
R2521 T9789 T9788 prep with,buffers
R2522 T9790 T9791 amod different,concentrations
R2523 T9791 T9789 pobj concentrations,with
R2524 T9824 T9820 conj depleted,control
R2525 T9792 T9791 compound salt,concentrations
R2526 T9793 T9791 acl ranging,concentrations
R2527 T9794 T9793 prep from,ranging
R2528 T9795 T9796 nummod 100,mM
R2529 T9825 T9823 punct -,p150CAF
R2530 T9796 T9797 compound mM,NaCl
R2531 T9797 T9794 pobj NaCl,from
R2532 T9798 T9794 prep to,from
R2533 T9826 T9823 nummod 1,p150CAF
R2534 T9799 T9800 nummod 1,M
R2535 T9800 T9801 compound M,NaCl
R2536 T9801 T9798 pobj NaCl,to
R2537 T9802 T9785 punct .,incubated
R2538 T9827 T9824 punct -,depleted
R2539 T9804 T9805 prep In,was
R2540 T9828 T9821 compound ES,cells
R2541 T9829 T9830 punct (,data
R2542 T9830 T9805 meta data,was
R2543 T9831 T9830 amod unpublished,data
R2548 T9832 T9830 punct ),data
R2553 T9833 T9805 punct .,was
R2558 T9835 T9836 advmod Therefore,are
R2564 T9837 T9836 punct ", ",are
R2569 T9838 T9839 det the,loss
R2573 T9839 T9836 nsubj loss,are
R2576 T9840 T9839 prep of,loss
R2580 T9841 T9840 pobj clustering,of
R2584 T9842 T9839 cc and,loss
R2589 T9843 T9839 conj decondensation,loss
R2593 T9844 T9843 prep of,decondensation
R2596 T9845 T9846 amod pericentric,heterochromatin
R2605 T9846 T9844 pobj heterochromatin,of
R2609 T9847 T9836 acomp unlikely,are
R2614 T9848 T9849 aux to,be
R2617 T9849 T9847 xcomp be,unlikely
R2624 T9850 T9851 det the,consequence
R2625 T9851 T9849 attr consequence,be
R2630 T9852 T9851 prep of,consequence
R2635 T9853 T9854 amod severe,defects
R2639 T9854 T9852 pobj defects,of
R2645 T9855 T9854 prep in,defects
R2654 T9856 T9857 amod nucleosomal,organization
R2659 T9857 T9855 pobj organization,in
R2663 T9858 T9836 punct .,are

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7851 24-29 GO:0033186 denotes CAF-1
T7852 51-58 CHEBI:15358 denotes histone
T7853 51-58 _FRAGMENT denotes histone
T7854 68-70 PR_EXT:000008603 denotes H4
T7855 87-90 CHEBI_SO_EXT:DNA denotes DNA
T7856 87-100 GO:0071897 denotes DNA synthesis
T7857 158-167 GO:0000785 denotes chromatin
T7858 207-218 GO:0000786 denotes nucleosomal
T7859 239-246 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T7860 263-271 GO_EXT:0004518 denotes nuclease
T7861 356-365 PR_EXT:000005402 denotes p150CAF-1
T7862 375-383 CL:0002322 denotes ES cells
T7863 378-383 CL_GO_EXT:cell denotes cells
T7864 405-411 SO_EXT:0001026 denotes genome
T7865 412-421 GO:0000785 denotes chromatin
T7866 440-447 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7867 526-533 CHEBI:15358 denotes histone
T7868 526-536 PR_EXT:000027594 denotes histone H3
T7869 542-561 GO:0000790 denotes chromatin in nuclei
T7870 576-581 CL_GO_EXT:cell denotes cells
T7871 582-593 GO:0009294 denotes transfected
T7872 611-620 PR_EXT:000005402 denotes p150CAF-1
T7873 621-625 GO:0016246 denotes RNAi
T7874 626-641 SO_EXT:0000755 denotes plasmid vectors
T7875 643-649 GO:0005634 denotes Nuclei
T7876 668-675 CHEBI_CHMO_EXT:buffer_solution denotes buffers
T7877 691-695 CHEBI:24866 denotes salt
T7878 731-735 CHEBI:26710 denotes NaCl
T7879 743-747 CHEBI:26710 denotes NaCl
T7880 782-789 CHEBI:15358 denotes histone
T7881 782-792 PR_EXT:000027594 denotes histone H3
T7882 819-828 GO:0000785 denotes chromatin
T7883 866-875 PR_EXT:000005402 denotes p150CAF-1
T7884 885-893 CL:0002322 denotes ES cells
T7885 888-893 CL_GO_EXT:cell denotes cells
T7886 970-997 GO:0005721 denotes pericentric heterochromatin
T7887 1054-1065 GO:0000786 denotes nucleosomal
R804 T7854 T7853 _lexicallyChainedTo H4,histone

2_test

Id Subject Object Predicate Lexical cue
17083276-14718166-85837815 102-104 14718166 denotes 11
17083276-16212490-85837816 105-107 16212490 denotes 12
T63760 102-104 14718166 denotes 11
T93971 105-107 16212490 denotes 12

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7466 24-29 GO:0033186 denotes CAF-1
T7467 51-58 CHEBI:15358 denotes histone
T7468 51-58 _FRAGMENT denotes histone
T7469 68-70 PR:000008603 denotes H4
T7470 87-100 GO:0071897 denotes DNA synthesis
T7471 158-167 GO:0000785 denotes chromatin
T7472 207-218 GO:0000786 denotes nucleosomal
T7473 356-365 PR:000005402 denotes p150CAF-1
T7474 375-383 CL:0002322 denotes ES cells
T7475 405-411 SO:0001026 denotes genome
T7476 412-421 GO:0000785 denotes chromatin
T7477 526-533 CHEBI:15358 denotes histone
T7478 526-536 PR:000027594 denotes histone H3
T7479 542-561 GO:0000790 denotes chromatin in nuclei
T7480 582-593 GO:0009294 denotes transfected
T7481 611-620 PR:000005402 denotes p150CAF-1
T7482 621-625 GO:0016246 denotes RNAi
T7483 626-641 SO:0000755 denotes plasmid vectors
T7484 643-649 GO:0005634 denotes Nuclei
T7485 691-695 CHEBI:24866 denotes salt
T7486 731-735 CHEBI:26710 denotes NaCl
T7487 743-747 CHEBI:26710 denotes NaCl
T7488 782-789 CHEBI:15358 denotes histone
T7489 782-792 PR:000027594 denotes histone H3
T7490 819-828 GO:0000785 denotes chromatin
T7491 866-875 PR:000005402 denotes p150CAF-1
T7492 885-893 CL:0002322 denotes ES cells
T7493 970-997 GO:0005721 denotes pericentric heterochromatin
T7494 1054-1065 GO:0000786 denotes nucleosomal
R790 T7469 T7468 _lexicallyChainedTo H4,histone