| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T808 |
6-8 |
VBZ |
denotes |
Is |
| T809 |
0-82 |
sentence |
denotes |
CAF-1 Is Essential for Heterochromatin Organization in Pluripotent Embryonic Cells |
| T810 |
3-4 |
HYPH |
denotes |
- |
| T811 |
4-5 |
CD |
denotes |
1 |
| T812 |
9-18 |
JJ |
denotes |
Essential |
| T813 |
19-22 |
IN |
denotes |
for |
| T814 |
23-38 |
NN |
denotes |
Heterochromatin |
| T815 |
39-51 |
NN |
denotes |
Organization |
| T816 |
52-54 |
IN |
denotes |
in |
| T817 |
55-66 |
JJ |
denotes |
Pluripotent |
| T818 |
77-82 |
NNS |
denotes |
Cells |
| T819 |
67-76 |
JJ |
denotes |
Embryonic |
| T820 |
82-83 |
sentence |
denotes |
|
| T821 |
129-240 |
sentence |
denotes |
During mammalian development, chromatin dynamics and epigenetic marking are important for genome reprogramming. |
| T822 |
129-135 |
IN |
denotes |
During |
| T823 |
201-204 |
VBP |
denotes |
are |
| T824 |
136-145 |
JJ |
denotes |
mammalian |
| T825 |
146-157 |
NN |
denotes |
development |
| T826 |
157-159 |
, |
denotes |
, |
| T827 |
159-168 |
NN |
denotes |
chromatin |
| T828 |
169-177 |
NNS |
denotes |
dynamics |
| T829 |
178-181 |
CC |
denotes |
and |
| T830 |
182-192 |
JJ |
denotes |
epigenetic |
| T831 |
193-200 |
NN |
denotes |
marking |
| T832 |
205-214 |
JJ |
denotes |
important |
| T833 |
215-218 |
IN |
denotes |
for |
| T834 |
219-225 |
NN |
denotes |
genome |
| T835 |
226-239 |
NN |
denotes |
reprogramming |
| T836 |
239-240 |
. |
denotes |
. |
| T837 |
240-332 |
sentence |
denotes |
Recent data suggest an important role for the chromatin assembly machinery in this process. |
| T838 |
241-247 |
JJ |
denotes |
Recent |
| T839 |
248-252 |
NNS |
denotes |
data |
| T840 |
253-260 |
VBP |
denotes |
suggest |
| T841 |
261-263 |
DT |
denotes |
an |
| T842 |
274-278 |
NN |
denotes |
role |
| T843 |
264-273 |
JJ |
denotes |
important |
| T844 |
279-282 |
IN |
denotes |
for |
| T845 |
283-286 |
DT |
denotes |
the |
| T846 |
306-315 |
NN |
denotes |
machinery |
| T847 |
287-296 |
NN |
denotes |
chromatin |
| T848 |
297-305 |
NN |
denotes |
assembly |
| T849 |
316-318 |
IN |
denotes |
in |
| T850 |
319-323 |
DT |
denotes |
this |
| T851 |
324-331 |
NN |
denotes |
process |
| T852 |
331-332 |
. |
denotes |
. |
| T853 |
332-534 |
sentence |
denotes |
To analyze the role of chromatin assembly factor 1 (CAF-1) during pre-implantation development, we generated a mouse line carrying a targeted mutation in the gene encoding its large subunit, p150CAF-1. |
| T854 |
333-335 |
TO |
denotes |
To |
| T855 |
336-343 |
VB |
denotes |
analyze |
| T856 |
432-441 |
VBD |
denotes |
generated |
| T857 |
344-347 |
DT |
denotes |
the |
| T858 |
348-352 |
NN |
denotes |
role |
| T859 |
353-355 |
IN |
denotes |
of |
| T860 |
356-365 |
NN |
denotes |
chromatin |
| T861 |
366-374 |
NN |
denotes |
assembly |
| T862 |
375-381 |
NN |
denotes |
factor |
| T863 |
382-383 |
CD |
denotes |
1 |
| T864 |
384-385 |
-LRB- |
denotes |
( |
| T865 |
385-388 |
NN |
denotes |
CAF |
| T866 |
388-389 |
HYPH |
denotes |
- |
| T867 |
389-390 |
CD |
denotes |
1 |
| T868 |
390-391 |
-RRB- |
denotes |
) |
| T869 |
392-398 |
IN |
denotes |
during |
| T870 |
399-415 |
NN |
denotes |
pre-implantation |
| T871 |
416-427 |
NN |
denotes |
development |
| T872 |
427-429 |
, |
denotes |
, |
| T873 |
429-431 |
PRP |
denotes |
we |
| T874 |
442-443 |
DT |
denotes |
a |
| T875 |
450-454 |
NN |
denotes |
line |
| T876 |
444-449 |
NN |
denotes |
mouse |
| T877 |
455-463 |
VBG |
denotes |
carrying |
| T878 |
464-465 |
DT |
denotes |
a |
| T879 |
475-483 |
NN |
denotes |
mutation |
| T880 |
466-474 |
VBN |
denotes |
targeted |
| T881 |
484-486 |
IN |
denotes |
in |
| T882 |
487-490 |
DT |
denotes |
the |
| T883 |
491-495 |
NN |
denotes |
gene |
| T884 |
496-504 |
VBG |
denotes |
encoding |
| T885 |
505-508 |
PRP$ |
denotes |
its |
| T886 |
515-522 |
NN |
denotes |
subunit |
| T887 |
509-514 |
JJ |
denotes |
large |
| T888 |
522-524 |
, |
denotes |
, |
| T889 |
524-531 |
NN |
denotes |
p150CAF |
| T890 |
531-532 |
HYPH |
denotes |
- |
| T891 |
532-533 |
CD |
denotes |
1 |
| T892 |
533-534 |
. |
denotes |
. |
| T893 |
534-626 |
sentence |
denotes |
Loss of p150CAF-1 in homozygous mutants leads to developmental arrest at the 16-cell stage. |
| T894 |
535-539 |
NN |
denotes |
Loss |
| T895 |
575-580 |
VBZ |
denotes |
leads |
| T896 |
540-542 |
IN |
denotes |
of |
| T897 |
543-550 |
NN |
denotes |
p150CAF |
| T898 |
550-551 |
HYPH |
denotes |
- |
| T899 |
551-552 |
CD |
denotes |
1 |
| T900 |
553-555 |
IN |
denotes |
in |
| T901 |
556-566 |
JJ |
denotes |
homozygous |
| T902 |
567-574 |
NNS |
denotes |
mutants |
| T903 |
581-583 |
IN |
denotes |
to |
| T904 |
584-597 |
JJ |
denotes |
developmental |
| T905 |
598-604 |
NN |
denotes |
arrest |
| T906 |
605-607 |
IN |
denotes |
at |
| T907 |
608-611 |
DT |
denotes |
the |
| T908 |
620-625 |
NN |
denotes |
stage |
| T909 |
612-614 |
CD |
denotes |
16 |
| T910 |
615-619 |
NN |
denotes |
cell |
| T911 |
614-615 |
HYPH |
denotes |
- |
| T912 |
625-626 |
. |
denotes |
. |
| T913 |
626-755 |
sentence |
denotes |
Absence of p150CAF-1 in these embryos results in severe alterations in the nuclear organization of constitutive heterochromatin. |
| T914 |
627-634 |
NN |
denotes |
Absence |
| T915 |
665-672 |
VBZ |
denotes |
results |
| T916 |
635-637 |
IN |
denotes |
of |
| T917 |
638-645 |
NN |
denotes |
p150CAF |
| T918 |
645-646 |
HYPH |
denotes |
- |
| T919 |
646-647 |
CD |
denotes |
1 |
| T920 |
648-650 |
IN |
denotes |
in |
| T921 |
651-656 |
DT |
denotes |
these |
| T922 |
657-664 |
NNS |
denotes |
embryos |
| T923 |
673-675 |
IN |
denotes |
in |
| T924 |
676-682 |
JJ |
denotes |
severe |
| T925 |
683-694 |
NNS |
denotes |
alterations |
| T926 |
695-697 |
IN |
denotes |
in |
| T927 |
698-701 |
DT |
denotes |
the |
| T928 |
710-722 |
NN |
denotes |
organization |
| T929 |
702-709 |
JJ |
denotes |
nuclear |
| T930 |
723-725 |
IN |
denotes |
of |
| T931 |
726-738 |
JJ |
denotes |
constitutive |
| T932 |
739-754 |
NN |
denotes |
heterochromatin |
| T933 |
754-755 |
. |
denotes |
. |
| T934 |
755-898 |
sentence |
denotes |
We provide evidence that in wild-type embryos, heterochromatin domains are extensively reorganized between the two-cell and blastocyst stages. |
| T935 |
756-758 |
PRP |
denotes |
We |
| T936 |
759-766 |
VBP |
denotes |
provide |
| T937 |
767-775 |
NN |
denotes |
evidence |
| T938 |
776-780 |
IN |
denotes |
that |
| T939 |
843-854 |
VBN |
denotes |
reorganized |
| T940 |
781-783 |
IN |
denotes |
in |
| T941 |
784-788 |
JJ |
denotes |
wild |
| T942 |
789-793 |
NN |
denotes |
type |
| T943 |
788-789 |
HYPH |
denotes |
- |
| T944 |
794-801 |
NNS |
denotes |
embryos |
| T945 |
801-803 |
, |
denotes |
, |
| T946 |
803-818 |
NN |
denotes |
heterochromatin |
| T947 |
819-826 |
NNS |
denotes |
domains |
| T948 |
827-830 |
VBP |
denotes |
are |
| T949 |
831-842 |
RB |
denotes |
extensively |
| T950 |
855-862 |
IN |
denotes |
between |
| T951 |
863-866 |
DT |
denotes |
the |
| T952 |
891-897 |
NNS |
denotes |
stages |
| T953 |
867-870 |
CD |
denotes |
two |
| T954 |
871-875 |
NN |
denotes |
cell |
| T955 |
870-871 |
HYPH |
denotes |
- |
| T956 |
876-879 |
CC |
denotes |
and |
| T957 |
880-890 |
NN |
denotes |
blastocyst |
| T958 |
897-898 |
. |
denotes |
. |
| T959 |
898-1197 |
sentence |
denotes |
In p150CAF-1 mutant 16-cell stage embryos, the altered organization of heterochromatin displays similarities to the structure of heterochromatin in two- to four-cell stage wild-type embryos, suggesting that CAF-1 is required for the maturation of heterochromatin during preimplantation development. |
| T960 |
899-901 |
IN |
denotes |
In |
| T961 |
986-994 |
VBZ |
denotes |
displays |
| T962 |
902-909 |
NN |
denotes |
p150CAF |
| T963 |
933-940 |
NNS |
denotes |
embryos |
| T964 |
909-910 |
HYPH |
denotes |
- |
| T965 |
910-911 |
CD |
denotes |
1 |
| T966 |
912-918 |
NN |
denotes |
mutant |
| T967 |
919-921 |
CD |
denotes |
16 |
| T968 |
922-926 |
NN |
denotes |
cell |
| T969 |
921-922 |
HYPH |
denotes |
- |
| T970 |
927-932 |
NN |
denotes |
stage |
| T971 |
940-942 |
, |
denotes |
, |
| T972 |
942-945 |
DT |
denotes |
the |
| T973 |
954-966 |
NN |
denotes |
organization |
| T974 |
946-953 |
JJ |
denotes |
altered |
| T975 |
967-969 |
IN |
denotes |
of |
| T976 |
970-985 |
NN |
denotes |
heterochromatin |
| T977 |
995-1007 |
NNS |
denotes |
similarities |
| T978 |
1008-1010 |
IN |
denotes |
to |
| T979 |
1011-1014 |
DT |
denotes |
the |
| T980 |
1015-1024 |
NN |
denotes |
structure |
| T981 |
1025-1027 |
IN |
denotes |
of |
| T982 |
1028-1043 |
NN |
denotes |
heterochromatin |
| T983 |
1044-1046 |
IN |
denotes |
in |
| T984 |
1047-1050 |
CD |
denotes |
two |
| T985 |
1055-1059 |
CD |
denotes |
four |
| T986 |
1050-1051 |
HYPH |
denotes |
- |
| T987 |
1052-1054 |
IN |
denotes |
to |
| T988 |
1060-1064 |
NN |
denotes |
cell |
| T989 |
1059-1060 |
HYPH |
denotes |
- |
| T990 |
1065-1070 |
NN |
denotes |
stage |
| T991 |
1081-1088 |
NNS |
denotes |
embryos |
| T992 |
1071-1075 |
JJ |
denotes |
wild |
| T993 |
1076-1080 |
NN |
denotes |
type |
| T994 |
1075-1076 |
HYPH |
denotes |
- |
| T995 |
1088-1090 |
, |
denotes |
, |
| T996 |
1090-1100 |
VBG |
denotes |
suggesting |
| T997 |
1101-1105 |
IN |
denotes |
that |
| T998 |
1115-1123 |
VBN |
denotes |
required |
| T999 |
1106-1109 |
NN |
denotes |
CAF |
| T1000 |
1109-1110 |
HYPH |
denotes |
- |
| T1001 |
1110-1111 |
CD |
denotes |
1 |
| T1002 |
1112-1114 |
VBZ |
denotes |
is |
| T1003 |
1124-1127 |
IN |
denotes |
for |
| T1004 |
1128-1131 |
DT |
denotes |
the |
| T1005 |
1132-1142 |
NN |
denotes |
maturation |
| T1006 |
1143-1145 |
IN |
denotes |
of |
| T1007 |
1146-1161 |
NN |
denotes |
heterochromatin |
| T1008 |
1162-1168 |
IN |
denotes |
during |
| T1009 |
1169-1184 |
NN |
denotes |
preimplantation |
| T1010 |
1185-1196 |
NN |
denotes |
development |
| T1011 |
1196-1197 |
. |
denotes |
. |
| T1012 |
1197-1379 |
sentence |
denotes |
In embryonic stem cells, depletion of p150CAF-1 using RNA interference results in the mislocalization, loss of clustering, and decondensation of pericentric heterochromatin domains. |
| T1013 |
1198-1200 |
IN |
denotes |
In |
| T1014 |
1269-1276 |
VBZ |
denotes |
results |
| T1015 |
1201-1210 |
JJ |
denotes |
embryonic |
| T1016 |
1216-1221 |
NNS |
denotes |
cells |
| T1017 |
1211-1215 |
NN |
denotes |
stem |
| T1018 |
1221-1223 |
, |
denotes |
, |
| T1019 |
1223-1232 |
NN |
denotes |
depletion |
| T1020 |
1233-1235 |
IN |
denotes |
of |
| T1021 |
1236-1243 |
NN |
denotes |
p150CAF |
| T1022 |
1243-1244 |
HYPH |
denotes |
- |
| T1023 |
1244-1245 |
CD |
denotes |
1 |
| T1024 |
1246-1251 |
VBG |
denotes |
using |
| T1025 |
1252-1255 |
NN |
denotes |
RNA |
| T1026 |
1256-1268 |
NN |
denotes |
interference |
| T1027 |
1277-1279 |
IN |
denotes |
in |
| T1028 |
1280-1283 |
DT |
denotes |
the |
| T1029 |
1284-1299 |
NN |
denotes |
mislocalization |
| T1030 |
1299-1301 |
, |
denotes |
, |
| T1031 |
1301-1305 |
NN |
denotes |
loss |
| T1032 |
1306-1308 |
IN |
denotes |
of |
| T1033 |
1309-1319 |
NN |
denotes |
clustering |
| T1034 |
1319-1321 |
, |
denotes |
, |
| T1035 |
1321-1324 |
CC |
denotes |
and |
| T1036 |
1325-1339 |
NN |
denotes |
decondensation |
| T1037 |
1340-1342 |
IN |
denotes |
of |
| T1038 |
1343-1354 |
JJ |
denotes |
pericentric |
| T1039 |
1371-1378 |
NNS |
denotes |
domains |
| T1040 |
1355-1370 |
NN |
denotes |
heterochromatin |
| T1041 |
1378-1379 |
. |
denotes |
. |
| T1042 |
1379-1532 |
sentence |
denotes |
Furthermore, loss of CAF-1 in these cells results in the alteration of epigenetic histone methylation marks at the level of pericentric heterochromatin. |
| T1043 |
1380-1391 |
RB |
denotes |
Furthermore |
| T1044 |
1422-1429 |
VBZ |
denotes |
results |
| T1045 |
1391-1393 |
, |
denotes |
, |
| T1046 |
1393-1397 |
NN |
denotes |
loss |
| T1047 |
1398-1400 |
IN |
denotes |
of |
| T1048 |
1401-1404 |
NN |
denotes |
CAF |
| T1049 |
1404-1405 |
HYPH |
denotes |
- |
| T1050 |
1405-1406 |
CD |
denotes |
1 |
| T1051 |
1407-1409 |
IN |
denotes |
in |
| T1052 |
1410-1415 |
DT |
denotes |
these |
| T1053 |
1416-1421 |
NNS |
denotes |
cells |
| T1054 |
1430-1432 |
IN |
denotes |
in |
| T1055 |
1433-1436 |
DT |
denotes |
the |
| T1056 |
1437-1447 |
NN |
denotes |
alteration |
| T1057 |
1448-1450 |
IN |
denotes |
of |
| T1058 |
1451-1461 |
JJ |
denotes |
epigenetic |
| T1059 |
1470-1481 |
NN |
denotes |
methylation |
| T1060 |
1462-1469 |
NN |
denotes |
histone |
| T1061 |
1482-1487 |
NNS |
denotes |
marks |
| T1062 |
1488-1490 |
IN |
denotes |
at |
| T1063 |
1491-1494 |
DT |
denotes |
the |
| T1064 |
1495-1500 |
NN |
denotes |
level |
| T1065 |
1501-1503 |
IN |
denotes |
of |
| T1066 |
1504-1515 |
JJ |
denotes |
pericentric |
| T1067 |
1516-1531 |
NN |
denotes |
heterochromatin |
| T1068 |
1531-1532 |
. |
denotes |
. |
| T1069 |
1532-1798 |
sentence |
denotes |
These alterations of heterochromatin are not found in p150CAF-1-depleted mouse embryonic fibroblasts, which are cells that are already lineage committed, suggesting that CAF-1 is specifically required for heterochromatin organization in pluripotent embryonic cells. |
| T1070 |
1533-1538 |
DT |
denotes |
These |
| T1071 |
1539-1550 |
NNS |
denotes |
alterations |
| T1072 |
1578-1583 |
VBN |
denotes |
found |
| T1073 |
1551-1553 |
IN |
denotes |
of |
| T1074 |
1554-1569 |
NN |
denotes |
heterochromatin |
| T1075 |
1570-1573 |
VBP |
denotes |
are |
| T1076 |
1574-1577 |
RB |
denotes |
not |
| T1077 |
1584-1586 |
IN |
denotes |
in |
| T1078 |
1587-1594 |
NN |
denotes |
p150CAF |
| T1079 |
1597-1605 |
VBN |
denotes |
depleted |
| T1080 |
1594-1595 |
HYPH |
denotes |
- |
| T1081 |
1595-1596 |
CD |
denotes |
1 |
| T1082 |
1596-1597 |
HYPH |
denotes |
- |
| T1083 |
1622-1633 |
NNS |
denotes |
fibroblasts |
| T1084 |
1606-1611 |
NN |
denotes |
mouse |
| T1085 |
1612-1621 |
JJ |
denotes |
embryonic |
| T1086 |
1633-1635 |
, |
denotes |
, |
| T1087 |
1635-1640 |
WDT |
denotes |
which |
| T1088 |
1641-1644 |
VBP |
denotes |
are |
| T1089 |
1645-1650 |
NNS |
denotes |
cells |
| T1090 |
1651-1655 |
WDT |
denotes |
that |
| T1091 |
1676-1685 |
VBN |
denotes |
committed |
| T1092 |
1656-1659 |
VBP |
denotes |
are |
| T1093 |
1660-1667 |
RB |
denotes |
already |
| T1094 |
1668-1675 |
NN |
denotes |
lineage |
| T1095 |
1685-1687 |
, |
denotes |
, |
| T1096 |
1687-1697 |
VBG |
denotes |
suggesting |
| T1097 |
1698-1702 |
IN |
denotes |
that |
| T1098 |
1725-1733 |
VBN |
denotes |
required |
| T1099 |
1703-1706 |
NN |
denotes |
CAF |
| T1100 |
1706-1707 |
HYPH |
denotes |
- |
| T1101 |
1707-1708 |
CD |
denotes |
1 |
| T1102 |
1709-1711 |
VBZ |
denotes |
is |
| T1103 |
1712-1724 |
RB |
denotes |
specifically |
| T1104 |
1734-1737 |
IN |
denotes |
for |
| T1105 |
1738-1753 |
NN |
denotes |
heterochromatin |
| T1106 |
1754-1766 |
NN |
denotes |
organization |
| T1107 |
1767-1769 |
IN |
denotes |
in |
| T1108 |
1770-1781 |
JJ |
denotes |
pluripotent |
| T1109 |
1792-1797 |
NNS |
denotes |
cells |
| T1110 |
1782-1791 |
JJ |
denotes |
embryonic |
| T1111 |
1797-1798 |
. |
denotes |
. |
| T1112 |
1798-1986 |
sentence |
denotes |
Our findings underline the role of the chromatin assembly machinery in controlling the spatial organization and epigenetic marking of the genome in early embryos and embryonic stem cells. |
| T1113 |
1799-1802 |
PRP$ |
denotes |
Our |
| T1114 |
1803-1811 |
NNS |
denotes |
findings |
| T1115 |
1812-1821 |
VBP |
denotes |
underline |
| T1116 |
1822-1825 |
DT |
denotes |
the |
| T1117 |
1826-1830 |
NN |
denotes |
role |
| T1118 |
1831-1833 |
IN |
denotes |
of |
| T1119 |
1834-1837 |
DT |
denotes |
the |
| T1120 |
1857-1866 |
NN |
denotes |
machinery |
| T1121 |
1838-1847 |
NN |
denotes |
chromatin |
| T1122 |
1848-1856 |
NN |
denotes |
assembly |
| T1123 |
1867-1869 |
IN |
denotes |
in |
| T1124 |
1870-1881 |
VBG |
denotes |
controlling |
| T1125 |
1882-1885 |
DT |
denotes |
the |
| T1126 |
1894-1906 |
NN |
denotes |
organization |
| T1127 |
1886-1893 |
JJ |
denotes |
spatial |
| T1128 |
1907-1910 |
CC |
denotes |
and |
| T1129 |
1911-1921 |
JJ |
denotes |
epigenetic |
| T1130 |
1922-1929 |
NN |
denotes |
marking |
| T1131 |
1930-1932 |
IN |
denotes |
of |
| T1132 |
1933-1936 |
DT |
denotes |
the |
| T1133 |
1937-1943 |
NN |
denotes |
genome |
| T1134 |
1944-1946 |
IN |
denotes |
in |
| T1135 |
1947-1952 |
JJ |
denotes |
early |
| T1136 |
1953-1960 |
NNS |
denotes |
embryos |
| T1137 |
1961-1964 |
CC |
denotes |
and |
| T1138 |
1965-1974 |
JJ |
denotes |
embryonic |
| T1139 |
1980-1985 |
NNS |
denotes |
cells |
| T1140 |
1975-1979 |
NN |
denotes |
stem |
| T1141 |
1985-1986 |
. |
denotes |
. |
| T2297 |
3237-3243 |
IN |
denotes |
During |
| T2298 |
3291-3300 |
VBZ |
denotes |
undergoes |
| T2299 |
3244-3249 |
NN |
denotes |
mouse |
| T2300 |
3267-3278 |
NN |
denotes |
development |
| T2301 |
3250-3266 |
NN |
denotes |
pre-implantation |
| T2302 |
3278-3280 |
, |
denotes |
, |
| T2303 |
3280-3283 |
DT |
denotes |
the |
| T2304 |
3284-3290 |
NN |
denotes |
genome |
| T2305 |
3301-3302 |
DT |
denotes |
a |
| T2306 |
3303-3309 |
NN |
denotes |
series |
| T2307 |
3310-3312 |
IN |
denotes |
of |
| T2308 |
3313-3318 |
JJ |
denotes |
major |
| T2309 |
3330-3337 |
NNS |
denotes |
changes |
| T2310 |
3319-3329 |
JJ |
denotes |
epigenetic |
| T2311 |
3338-3346 |
VBN |
denotes |
required |
| T2312 |
3347-3350 |
IN |
denotes |
for |
| T2313 |
3351-3360 |
JJ |
denotes |
embryonic |
| T2314 |
3366-3376 |
NN |
denotes |
expression |
| T2315 |
3361-3365 |
NN |
denotes |
gene |
| T2316 |
3376-3378 |
, |
denotes |
, |
| T2317 |
3378-3381 |
DT |
denotes |
the |
| T2318 |
3382-3393 |
NN |
denotes |
maintenance |
| T2319 |
3394-3396 |
IN |
denotes |
of |
| T2320 |
3397-3408 |
NN |
denotes |
totipotency |
| T2321 |
3408-3410 |
, |
denotes |
, |
| T2322 |
3410-3413 |
CC |
denotes |
and |
| T2323 |
3414-3417 |
DT |
denotes |
the |
| T2324 |
3440-3446 |
NNS |
denotes |
events |
| T2325 |
3418-3423 |
JJ |
denotes |
first |
| T2326 |
3424-3439 |
NN |
denotes |
differentiation |
| T2327 |
3447-3448 |
-LRB- |
denotes |
[ |
| T2328 |
3450-3451 |
CD |
denotes |
2 |
| T2329 |
3448-3449 |
CD |
denotes |
1 |
| T2330 |
3449-3450 |
, |
denotes |
, |
| T2331 |
3451-3452 |
-RRB- |
denotes |
] |
| T2332 |
3452-3453 |
. |
denotes |
. |
| T2333 |
3453-3624 |
sentence |
denotes |
While many studies have established the importance of DNA methylation in epigenetic reprogramming, recent data point to a crucial role of chromatin in this process [3–5]. |
| T2334 |
3454-3459 |
IN |
denotes |
While |
| T2335 |
3478-3489 |
VBN |
denotes |
established |
| T2336 |
3460-3464 |
JJ |
denotes |
many |
| T2337 |
3465-3472 |
NNS |
denotes |
studies |
| T2338 |
3473-3477 |
VBP |
denotes |
have |
| T2339 |
3565-3570 |
VBP |
denotes |
point |
| T2340 |
3490-3493 |
DT |
denotes |
the |
| T2341 |
3494-3504 |
NN |
denotes |
importance |
| T2342 |
3505-3507 |
IN |
denotes |
of |
| T2343 |
3508-3511 |
NN |
denotes |
DNA |
| T2344 |
3512-3523 |
NN |
denotes |
methylation |
| T2345 |
3524-3526 |
IN |
denotes |
in |
| T2346 |
3527-3537 |
JJ |
denotes |
epigenetic |
| T2347 |
3538-3551 |
NN |
denotes |
reprogramming |
| T2348 |
3551-3553 |
, |
denotes |
, |
| T2349 |
3553-3559 |
JJ |
denotes |
recent |
| T2350 |
3560-3564 |
NNS |
denotes |
data |
| T2351 |
3571-3573 |
IN |
denotes |
to |
| T2352 |
3574-3575 |
DT |
denotes |
a |
| T2353 |
3584-3588 |
NN |
denotes |
role |
| T2354 |
3576-3583 |
JJ |
denotes |
crucial |
| T2355 |
3589-3591 |
IN |
denotes |
of |
| T2356 |
3592-3601 |
NN |
denotes |
chromatin |
| T2357 |
3602-3604 |
IN |
denotes |
in |
| T2358 |
3605-3609 |
DT |
denotes |
this |
| T2359 |
3610-3617 |
NN |
denotes |
process |
| T2360 |
3618-3619 |
-LRB- |
denotes |
[ |
| T2361 |
3619-3620 |
CD |
denotes |
3 |
| T2362 |
3620-3621 |
SYM |
denotes |
– |
| T2363 |
3621-3622 |
CD |
denotes |
5 |
| T2364 |
3622-3623 |
-RRB- |
denotes |
] |
| T2365 |
3623-3624 |
. |
denotes |
. |
| T2366 |
3624-3832 |
sentence |
denotes |
Yet we know very little about the role of histone modifying enzymes, chromatin remodeling factors, and histone chaperones during pre-implantation development, or in stem cells derived from early embryos [6]. |
| T2367 |
3625-3628 |
RB |
denotes |
Yet |
| T2368 |
3632-3636 |
VBP |
denotes |
know |
| T2369 |
3629-3631 |
PRP |
denotes |
we |
| T2370 |
3637-3641 |
RB |
denotes |
very |
| T2371 |
3642-3648 |
JJ |
denotes |
little |
| T2372 |
3649-3654 |
IN |
denotes |
about |
| T2373 |
3655-3658 |
DT |
denotes |
the |
| T2374 |
3659-3663 |
NN |
denotes |
role |
| T2375 |
3664-3666 |
IN |
denotes |
of |
| T2376 |
3667-3674 |
NN |
denotes |
histone |
| T2377 |
3675-3684 |
VBG |
denotes |
modifying |
| T2378 |
3685-3692 |
NNS |
denotes |
enzymes |
| T2379 |
3692-3694 |
, |
denotes |
, |
| T2380 |
3694-3703 |
NN |
denotes |
chromatin |
| T2381 |
3704-3714 |
NN |
denotes |
remodeling |
| T2382 |
3715-3722 |
NNS |
denotes |
factors |
| T2383 |
3722-3724 |
, |
denotes |
, |
| T2384 |
3724-3727 |
CC |
denotes |
and |
| T2385 |
3728-3735 |
NN |
denotes |
histone |
| T2386 |
3736-3746 |
NNS |
denotes |
chaperones |
| T2387 |
3747-3753 |
IN |
denotes |
during |
| T2388 |
3754-3770 |
NN |
denotes |
pre-implantation |
| T2389 |
3771-3782 |
NN |
denotes |
development |
| T2390 |
3782-3784 |
, |
denotes |
, |
| T2391 |
3784-3786 |
CC |
denotes |
or |
| T2392 |
3787-3789 |
IN |
denotes |
in |
| T2393 |
3790-3794 |
NN |
denotes |
stem |
| T2394 |
3795-3800 |
NNS |
denotes |
cells |
| T2395 |
3801-3808 |
VBN |
denotes |
derived |
| T2396 |
3809-3813 |
IN |
denotes |
from |
| T2397 |
3814-3819 |
JJ |
denotes |
early |
| T2398 |
3820-3827 |
NNS |
denotes |
embryos |
| T2399 |
3828-3829 |
-LRB- |
denotes |
[ |
| T2400 |
3829-3830 |
CD |
denotes |
6 |
| T2401 |
3830-3831 |
-RRB- |
denotes |
] |
| T2402 |
3831-3832 |
. |
denotes |
. |
| T2403 |
3832-4078 |
sentence |
denotes |
A subset of identified histone chaperones and chromatin remodeling complexes can collaborate to promote nucleosome assembly in vitro and are therefore in a strategic position to control chromatin assembly and maturation during development [7,8]. |
| T2404 |
3833-3834 |
DT |
denotes |
A |
| T2405 |
3835-3841 |
NN |
denotes |
subset |
| T2406 |
3914-3925 |
VB |
denotes |
collaborate |
| T2407 |
3842-3844 |
IN |
denotes |
of |
| T2408 |
3845-3855 |
VBN |
denotes |
identified |
| T2409 |
3864-3874 |
NNS |
denotes |
chaperones |
| T2410 |
3856-3863 |
NN |
denotes |
histone |
| T2411 |
3875-3878 |
CC |
denotes |
and |
| T2412 |
3879-3888 |
NN |
denotes |
chromatin |
| T2413 |
3889-3899 |
NN |
denotes |
remodeling |
| T2414 |
3900-3909 |
NNS |
denotes |
complexes |
| T2415 |
3910-3913 |
MD |
denotes |
can |
| T2416 |
3926-3928 |
TO |
denotes |
to |
| T2417 |
3929-3936 |
VB |
denotes |
promote |
| T2418 |
3937-3947 |
NN |
denotes |
nucleosome |
| T2419 |
3948-3956 |
NN |
denotes |
assembly |
| T2420 |
3957-3959 |
FW |
denotes |
in |
| T2421 |
3960-3965 |
FW |
denotes |
vitro |
| T2422 |
3966-3969 |
CC |
denotes |
and |
| T2423 |
3970-3973 |
VBP |
denotes |
are |
| T2424 |
3974-3983 |
RB |
denotes |
therefore |
| T2425 |
3984-3986 |
IN |
denotes |
in |
| T2426 |
3987-3988 |
DT |
denotes |
a |
| T2427 |
3999-4007 |
NN |
denotes |
position |
| T2428 |
3989-3998 |
JJ |
denotes |
strategic |
| T2429 |
4008-4010 |
TO |
denotes |
to |
| T2430 |
4011-4018 |
VB |
denotes |
control |
| T2431 |
4019-4028 |
NN |
denotes |
chromatin |
| T2432 |
4029-4037 |
NN |
denotes |
assembly |
| T2433 |
4038-4041 |
CC |
denotes |
and |
| T2434 |
4042-4052 |
NN |
denotes |
maturation |
| T2435 |
4053-4059 |
IN |
denotes |
during |
| T2436 |
4060-4071 |
NN |
denotes |
development |
| T2437 |
4072-4073 |
-LRB- |
denotes |
[ |
| T2438 |
4075-4076 |
CD |
denotes |
8 |
| T2439 |
4073-4074 |
CD |
denotes |
7 |
| T2440 |
4074-4075 |
, |
denotes |
, |
| T2441 |
4076-4077 |
-RRB- |
denotes |
] |
| T2442 |
4077-4078 |
. |
denotes |
. |
| T2443 |
4078-4300 |
sentence |
denotes |
Among histone chaperones, chromatin assembly factor 1 (CAF-1) is a three-subunit (p150, p60, and p48) complex which promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair [9,10]. |
| T2444 |
4079-4084 |
IN |
denotes |
Among |
| T2445 |
4141-4143 |
VBZ |
denotes |
is |
| T2446 |
4085-4092 |
NN |
denotes |
histone |
| T2447 |
4093-4103 |
NNS |
denotes |
chaperones |
| T2448 |
4103-4105 |
, |
denotes |
, |
| T2449 |
4105-4114 |
NN |
denotes |
chromatin |
| T2450 |
4115-4123 |
NN |
denotes |
assembly |
| T2451 |
4124-4130 |
NN |
denotes |
factor |
| T2452 |
4131-4132 |
CD |
denotes |
1 |
| T2453 |
4133-4134 |
-LRB- |
denotes |
( |
| T2454 |
4134-4137 |
NN |
denotes |
CAF |
| T2455 |
4137-4138 |
HYPH |
denotes |
- |
| T2456 |
4138-4139 |
CD |
denotes |
1 |
| T2457 |
4139-4140 |
-RRB- |
denotes |
) |
| T2458 |
4144-4145 |
DT |
denotes |
a |
| T2459 |
4181-4188 |
NN |
denotes |
complex |
| T2460 |
4146-4151 |
CD |
denotes |
three |
| T2461 |
4152-4159 |
NN |
denotes |
subunit |
| T2462 |
4151-4152 |
HYPH |
denotes |
- |
| T2463 |
4160-4161 |
-LRB- |
denotes |
( |
| T2464 |
4161-4165 |
NN |
denotes |
p150 |
| T2465 |
4165-4167 |
, |
denotes |
, |
| T2466 |
4167-4170 |
NN |
denotes |
p60 |
| T2467 |
4170-4172 |
, |
denotes |
, |
| T2468 |
4172-4175 |
CC |
denotes |
and |
| T2469 |
4176-4179 |
NN |
denotes |
p48 |
| T2470 |
4179-4180 |
-RRB- |
denotes |
) |
| T2471 |
4189-4194 |
WDT |
denotes |
which |
| T2472 |
4195-4203 |
VBZ |
denotes |
promotes |
| T2473 |
4204-4211 |
NN |
denotes |
histone |
| T2474 |
4212-4214 |
NN |
denotes |
H3 |
| T2475 |
4222-4232 |
NN |
denotes |
deposition |
| T2476 |
4215-4218 |
CC |
denotes |
and |
| T2477 |
4219-4221 |
NN |
denotes |
H4 |
| T2478 |
4233-4237 |
IN |
denotes |
onto |
| T2479 |
4238-4243 |
RB |
denotes |
newly |
| T2480 |
4244-4255 |
VBN |
denotes |
synthesized |
| T2481 |
4256-4259 |
NN |
denotes |
DNA |
| T2482 |
4260-4266 |
IN |
denotes |
during |
| T2483 |
4267-4278 |
NN |
denotes |
replication |
| T2484 |
4279-4281 |
CC |
denotes |
or |
| T2485 |
4282-4285 |
NN |
denotes |
DNA |
| T2486 |
4286-4292 |
NN |
denotes |
repair |
| T2487 |
4293-4294 |
-LRB- |
denotes |
[ |
| T2488 |
4296-4298 |
CD |
denotes |
10 |
| T2489 |
4294-4295 |
CD |
denotes |
9 |
| T2490 |
4295-4296 |
, |
denotes |
, |
| T2491 |
4298-4299 |
-RRB- |
denotes |
] |
| T2492 |
4299-4300 |
. |
denotes |
. |
| T2493 |
4300-4552 |
sentence |
denotes |
Specifically, CAF-1 deposits the histone H3 variant H3.1 into chromatin, in a pathway coupled to DNA synthesis, whereas a second histone chaperone, HIRA, is involved in the deposition of the H3.3 variant in a DNA synthesis independent pathway [11,12]. |
| T2494 |
4301-4313 |
RB |
denotes |
Specifically |
| T2495 |
4321-4329 |
VBZ |
denotes |
deposits |
| T2496 |
4313-4315 |
, |
denotes |
, |
| T2497 |
4315-4318 |
NN |
denotes |
CAF |
| T2498 |
4318-4319 |
HYPH |
denotes |
- |
| T2499 |
4319-4320 |
CD |
denotes |
1 |
| T2500 |
4330-4333 |
DT |
denotes |
the |
| T2501 |
4345-4352 |
NN |
denotes |
variant |
| T2502 |
4334-4341 |
NN |
denotes |
histone |
| T2503 |
4342-4344 |
NN |
denotes |
H3 |
| T2504 |
4353-4357 |
NN |
denotes |
H3.1 |
| T2505 |
4358-4362 |
IN |
denotes |
into |
| T2506 |
4363-4372 |
NN |
denotes |
chromatin |
| T2507 |
4372-4374 |
, |
denotes |
, |
| T2508 |
4374-4376 |
IN |
denotes |
in |
| T2509 |
4377-4378 |
DT |
denotes |
a |
| T2510 |
4379-4386 |
NN |
denotes |
pathway |
| T2511 |
4387-4394 |
VBN |
denotes |
coupled |
| T2512 |
4395-4397 |
IN |
denotes |
to |
| T2513 |
4398-4401 |
NN |
denotes |
DNA |
| T2514 |
4402-4411 |
NN |
denotes |
synthesis |
| T2515 |
4411-4413 |
, |
denotes |
, |
| T2516 |
4413-4420 |
IN |
denotes |
whereas |
| T2517 |
4458-4466 |
VBN |
denotes |
involved |
| T2518 |
4421-4422 |
DT |
denotes |
a |
| T2519 |
4438-4447 |
NN |
denotes |
chaperone |
| T2520 |
4423-4429 |
JJ |
denotes |
second |
| T2521 |
4430-4437 |
NN |
denotes |
histone |
| T2522 |
4447-4449 |
, |
denotes |
, |
| T2523 |
4449-4453 |
NN |
denotes |
HIRA |
| T2524 |
4453-4455 |
, |
denotes |
, |
| T2525 |
4455-4457 |
VBZ |
denotes |
is |
| T2526 |
4467-4469 |
IN |
denotes |
in |
| T2527 |
4470-4473 |
DT |
denotes |
the |
| T2528 |
4474-4484 |
NN |
denotes |
deposition |
| T2529 |
4485-4487 |
IN |
denotes |
of |
| T2530 |
4488-4491 |
DT |
denotes |
the |
| T2531 |
4497-4504 |
NN |
denotes |
variant |
| T2532 |
4492-4496 |
NN |
denotes |
H3.3 |
| T2533 |
4505-4507 |
IN |
denotes |
in |
| T2534 |
4508-4509 |
DT |
denotes |
a |
| T2535 |
4536-4543 |
NN |
denotes |
pathway |
| T2536 |
4510-4513 |
NN |
denotes |
DNA |
| T2537 |
4514-4523 |
NN |
denotes |
synthesis |
| T2538 |
4524-4535 |
JJ |
denotes |
independent |
| T2539 |
4544-4545 |
-LRB- |
denotes |
[ |
| T2540 |
4548-4550 |
CD |
denotes |
12 |
| T2541 |
4545-4547 |
CD |
denotes |
11 |
| T2542 |
4547-4548 |
, |
denotes |
, |
| T2543 |
4550-4551 |
-RRB- |
denotes |
] |
| T2544 |
4551-4552 |
. |
denotes |
. |
| T2545 |
4552-4859 |
sentence |
denotes |
In addition to this specific chromatin assembly activity, CAF-1 interacts with several proteins present in heterochromatin, including heterochromatin protein 1 (HP1) and MBD1, a methyl-CpG binding domain protein that recruits histone deacetylase and repressive histone methyltransferase activities [13–15]. |
| T2546 |
4553-4555 |
IN |
denotes |
In |
| T2547 |
4617-4626 |
VBZ |
denotes |
interacts |
| T2548 |
4556-4564 |
NN |
denotes |
addition |
| T2549 |
4565-4567 |
IN |
denotes |
to |
| T2550 |
4568-4572 |
DT |
denotes |
this |
| T2551 |
4601-4609 |
NN |
denotes |
activity |
| T2552 |
4573-4581 |
JJ |
denotes |
specific |
| T2553 |
4582-4591 |
NN |
denotes |
chromatin |
| T2554 |
4592-4600 |
NN |
denotes |
assembly |
| T2555 |
4609-4611 |
, |
denotes |
, |
| T2556 |
4611-4614 |
NN |
denotes |
CAF |
| T2557 |
4614-4615 |
HYPH |
denotes |
- |
| T2558 |
4615-4616 |
CD |
denotes |
1 |
| T2559 |
4627-4631 |
IN |
denotes |
with |
| T2560 |
4632-4639 |
JJ |
denotes |
several |
| T2561 |
4640-4648 |
NN |
denotes |
proteins |
| T2562 |
4649-4656 |
JJ |
denotes |
present |
| T2563 |
4657-4659 |
IN |
denotes |
in |
| T2564 |
4660-4675 |
NN |
denotes |
heterochromatin |
| T2565 |
4675-4677 |
, |
denotes |
, |
| T2566 |
4677-4686 |
VBG |
denotes |
including |
| T2567 |
4687-4702 |
NN |
denotes |
heterochromatin |
| T2568 |
4703-4710 |
NN |
denotes |
protein |
| T2569 |
4711-4712 |
CD |
denotes |
1 |
| T2570 |
4713-4714 |
-LRB- |
denotes |
( |
| T2571 |
4714-4717 |
NN |
denotes |
HP1 |
| T2572 |
4717-4718 |
-RRB- |
denotes |
) |
| T2573 |
4719-4722 |
CC |
denotes |
and |
| T2574 |
4723-4727 |
NN |
denotes |
MBD1 |
| T2575 |
4727-4729 |
, |
denotes |
, |
| T2576 |
4729-4730 |
DT |
denotes |
a |
| T2577 |
4757-4764 |
NN |
denotes |
protein |
| T2578 |
4731-4737 |
NN |
denotes |
methyl |
| T2579 |
4738-4741 |
NN |
denotes |
CpG |
| T2580 |
4737-4738 |
HYPH |
denotes |
- |
| T2581 |
4742-4749 |
NN |
denotes |
binding |
| T2582 |
4750-4756 |
NN |
denotes |
domain |
| T2583 |
4765-4769 |
WDT |
denotes |
that |
| T2584 |
4770-4778 |
VBZ |
denotes |
recruits |
| T2585 |
4779-4786 |
NN |
denotes |
histone |
| T2586 |
4787-4798 |
NN |
denotes |
deacetylase |
| T2587 |
4840-4850 |
NNS |
denotes |
activities |
| T2588 |
4799-4802 |
CC |
denotes |
and |
| T2589 |
4803-4813 |
JJ |
denotes |
repressive |
| T2590 |
4822-4839 |
NN |
denotes |
methyltransferase |
| T2591 |
4814-4821 |
NN |
denotes |
histone |
| T2592 |
4851-4852 |
-LRB- |
denotes |
[ |
| T2593 |
4852-4854 |
CD |
denotes |
13 |
| T2594 |
4854-4855 |
SYM |
denotes |
– |
| T2595 |
4855-4857 |
CD |
denotes |
15 |
| T2596 |
4857-4858 |
-RRB- |
denotes |
] |
| T2597 |
4858-4859 |
. |
denotes |
. |
| T2598 |
4859-5031 |
sentence |
denotes |
Furthermore, p150CAF-1 is required to ensure a replication-specific pool of HP1 molecules at replication sites in pericentric heterochromatin during mid-late S phase [16]. |
| T2599 |
4860-4871 |
RB |
denotes |
Furthermore |
| T2600 |
4886-4894 |
VBN |
denotes |
required |
| T2601 |
4871-4873 |
, |
denotes |
, |
| T2602 |
4873-4880 |
NN |
denotes |
p150CAF |
| T2603 |
4880-4881 |
HYPH |
denotes |
- |
| T2604 |
4881-4882 |
CD |
denotes |
1 |
| T2605 |
4883-4885 |
VBZ |
denotes |
is |
| T2606 |
4895-4897 |
TO |
denotes |
to |
| T2607 |
4898-4904 |
VB |
denotes |
ensure |
| T2608 |
4905-4906 |
DT |
denotes |
a |
| T2609 |
4928-4932 |
NN |
denotes |
pool |
| T2610 |
4907-4918 |
NN |
denotes |
replication |
| T2611 |
4919-4927 |
JJ |
denotes |
specific |
| T2612 |
4918-4919 |
HYPH |
denotes |
- |
| T2613 |
4933-4935 |
IN |
denotes |
of |
| T2614 |
4936-4939 |
NN |
denotes |
HP1 |
| T2615 |
4940-4949 |
NNS |
denotes |
molecules |
| T2616 |
4950-4952 |
IN |
denotes |
at |
| T2617 |
4953-4964 |
NN |
denotes |
replication |
| T2618 |
4965-4970 |
NNS |
denotes |
sites |
| T2619 |
4971-4973 |
IN |
denotes |
in |
| T2620 |
4974-4985 |
JJ |
denotes |
pericentric |
| T2621 |
4986-5001 |
NN |
denotes |
heterochromatin |
| T2622 |
5002-5008 |
IN |
denotes |
during |
| T2623 |
5009-5012 |
JJ |
denotes |
mid |
| T2624 |
5013-5017 |
JJ |
denotes |
late |
| T2625 |
5012-5013 |
SYM |
denotes |
- |
| T2626 |
5020-5025 |
NN |
denotes |
phase |
| T2627 |
5018-5019 |
NN |
denotes |
S |
| T2628 |
5026-5027 |
-LRB- |
denotes |
[ |
| T2629 |
5027-5029 |
CD |
denotes |
16 |
| T2630 |
5029-5030 |
-RRB- |
denotes |
] |
| T2631 |
5030-5031 |
. |
denotes |
. |
| T2632 |
5031-5164 |
sentence |
denotes |
Taken together, these data suggest roles for CAF-1 in the formation of heterochromatin and in the heritability of epigenetic traits. |
| T2633 |
5032-5037 |
VBN |
denotes |
Taken |
| T2634 |
5059-5066 |
VBP |
denotes |
suggest |
| T2635 |
5038-5046 |
RB |
denotes |
together |
| T2636 |
5046-5048 |
, |
denotes |
, |
| T2637 |
5048-5053 |
DT |
denotes |
these |
| T2638 |
5054-5058 |
NNS |
denotes |
data |
| T2639 |
5067-5072 |
NNS |
denotes |
roles |
| T2640 |
5073-5076 |
IN |
denotes |
for |
| T2641 |
5077-5080 |
NN |
denotes |
CAF |
| T2642 |
5080-5081 |
HYPH |
denotes |
- |
| T2643 |
5081-5082 |
CD |
denotes |
1 |
| T2644 |
5083-5085 |
IN |
denotes |
in |
| T2645 |
5086-5089 |
DT |
denotes |
the |
| T2646 |
5090-5099 |
NN |
denotes |
formation |
| T2647 |
5100-5102 |
IN |
denotes |
of |
| T2648 |
5103-5118 |
NN |
denotes |
heterochromatin |
| T2649 |
5119-5122 |
CC |
denotes |
and |
| T2650 |
5123-5125 |
IN |
denotes |
in |
| T2651 |
5126-5129 |
DT |
denotes |
the |
| T2652 |
5130-5142 |
NN |
denotes |
heritability |
| T2653 |
5143-5145 |
IN |
denotes |
of |
| T2654 |
5146-5156 |
JJ |
denotes |
epigenetic |
| T2655 |
5157-5163 |
NNS |
denotes |
traits |
| T2656 |
5163-5164 |
. |
denotes |
. |
| T2657 |
5164-5424 |
sentence |
denotes |
While the function of this evolutionary conserved histone chaperone has been studied extensively biochemically, we still lack information concerning its importance during early development in mammals and in pluripotent cells such as embryonic stem (ES) cells. |
| T2658 |
5165-5170 |
IN |
denotes |
While |
| T2659 |
5242-5249 |
VBN |
denotes |
studied |
| T2660 |
5171-5174 |
DT |
denotes |
the |
| T2661 |
5175-5183 |
NN |
denotes |
function |
| T2662 |
5184-5186 |
IN |
denotes |
of |
| T2663 |
5187-5191 |
DT |
denotes |
this |
| T2664 |
5223-5232 |
NN |
denotes |
chaperone |
| T2665 |
5192-5204 |
JJ |
denotes |
evolutionary |
| T2666 |
5205-5214 |
VBN |
denotes |
conserved |
| T2667 |
5215-5222 |
NN |
denotes |
histone |
| T2668 |
5233-5236 |
VBZ |
denotes |
has |
| T2669 |
5237-5241 |
VBN |
denotes |
been |
| T2670 |
5286-5290 |
VBP |
denotes |
lack |
| T2671 |
5250-5261 |
RB |
denotes |
extensively |
| T2672 |
5262-5275 |
RB |
denotes |
biochemically |
| T2673 |
5275-5277 |
, |
denotes |
, |
| T2674 |
5277-5279 |
PRP |
denotes |
we |
| T2675 |
5280-5285 |
RB |
denotes |
still |
| T2676 |
5291-5302 |
NN |
denotes |
information |
| T2677 |
5303-5313 |
VBG |
denotes |
concerning |
| T2678 |
5314-5317 |
PRP$ |
denotes |
its |
| T2679 |
5318-5328 |
NN |
denotes |
importance |
| T2680 |
5329-5335 |
IN |
denotes |
during |
| T2681 |
5336-5341 |
JJ |
denotes |
early |
| T2682 |
5342-5353 |
NN |
denotes |
development |
| T2683 |
5354-5356 |
IN |
denotes |
in |
| T2684 |
5357-5364 |
NNS |
denotes |
mammals |
| T2685 |
5365-5368 |
CC |
denotes |
and |
| T2686 |
5369-5371 |
IN |
denotes |
in |
| T2687 |
5372-5383 |
JJ |
denotes |
pluripotent |
| T2688 |
5384-5389 |
NNS |
denotes |
cells |
| T2689 |
5390-5394 |
JJ |
denotes |
such |
| T2690 |
5395-5397 |
IN |
denotes |
as |
| T2691 |
5398-5407 |
JJ |
denotes |
embryonic |
| T2692 |
5408-5412 |
NN |
denotes |
stem |
| T2693 |
5418-5423 |
NNS |
denotes |
cells |
| T2694 |
5413-5414 |
-LRB- |
denotes |
( |
| T2695 |
5414-5416 |
NN |
denotes |
ES |
| T2696 |
5416-5417 |
-RRB- |
denotes |
) |
| T2697 |
5423-5424 |
. |
denotes |
. |
| T2698 |
5424-5582 |
sentence |
denotes |
Here, we have analyzed the importance of CAF-1 during early mouse development by genetic ablation and in ES cells by depletion using RNA interference (RNAi). |
| T2699 |
5425-5429 |
RB |
denotes |
Here |
| T2700 |
5439-5447 |
VBN |
denotes |
analyzed |
| T2701 |
5429-5431 |
, |
denotes |
, |
| T2702 |
5431-5433 |
PRP |
denotes |
we |
| T2703 |
5434-5438 |
VBP |
denotes |
have |
| T2704 |
5448-5451 |
DT |
denotes |
the |
| T2705 |
5452-5462 |
NN |
denotes |
importance |
| T2706 |
5463-5465 |
IN |
denotes |
of |
| T2707 |
5466-5469 |
NN |
denotes |
CAF |
| T2708 |
5469-5470 |
HYPH |
denotes |
- |
| T2709 |
5470-5471 |
CD |
denotes |
1 |
| T2710 |
5472-5478 |
IN |
denotes |
during |
| T2711 |
5479-5484 |
JJ |
denotes |
early |
| T2712 |
5491-5502 |
NN |
denotes |
development |
| T2713 |
5485-5490 |
NN |
denotes |
mouse |
| T2714 |
5503-5505 |
IN |
denotes |
by |
| T2715 |
5506-5513 |
JJ |
denotes |
genetic |
| T2716 |
5514-5522 |
NN |
denotes |
ablation |
| T2717 |
5523-5526 |
CC |
denotes |
and |
| T2718 |
5527-5529 |
IN |
denotes |
in |
| T2719 |
5530-5532 |
NN |
denotes |
ES |
| T2720 |
5533-5538 |
NNS |
denotes |
cells |
| T2721 |
5539-5541 |
IN |
denotes |
by |
| T2722 |
5542-5551 |
NN |
denotes |
depletion |
| T2723 |
5552-5557 |
VBG |
denotes |
using |
| T2724 |
5558-5561 |
NN |
denotes |
RNA |
| T2725 |
5562-5574 |
NN |
denotes |
interference |
| T2726 |
5575-5576 |
-LRB- |
denotes |
( |
| T2727 |
5576-5580 |
NN |
denotes |
RNAi |
| T2728 |
5580-5581 |
-RRB- |
denotes |
) |
| T2729 |
5581-5582 |
. |
denotes |
. |
| T2730 |
5582-5665 |
sentence |
denotes |
We show that CAF-1 is essential for viability in early mouse embryos and ES cells. |
| T2731 |
5583-5585 |
PRP |
denotes |
We |
| T2732 |
5586-5590 |
VBP |
denotes |
show |
| T2733 |
5591-5595 |
IN |
denotes |
that |
| T2734 |
5602-5604 |
VBZ |
denotes |
is |
| T2735 |
5596-5599 |
NN |
denotes |
CAF |
| T2736 |
5599-5600 |
HYPH |
denotes |
- |
| T2737 |
5600-5601 |
CD |
denotes |
1 |
| T2738 |
5605-5614 |
JJ |
denotes |
essential |
| T2739 |
5615-5618 |
IN |
denotes |
for |
| T2740 |
5619-5628 |
NN |
denotes |
viability |
| T2741 |
5629-5631 |
IN |
denotes |
in |
| T2742 |
5632-5637 |
JJ |
denotes |
early |
| T2743 |
5644-5651 |
NNS |
denotes |
embryos |
| T2744 |
5638-5643 |
NN |
denotes |
mouse |
| T2745 |
5652-5655 |
CC |
denotes |
and |
| T2746 |
5656-5658 |
NN |
denotes |
ES |
| T2747 |
5659-5664 |
NNS |
denotes |
cells |
| T2748 |
5664-5665 |
. |
denotes |
. |
| T2749 |
5665-5819 |
sentence |
denotes |
We provide evidence that CAF-1 is required for the spatial organization and epigenetic marking of heterochromatin domains in pluripotent embryonic cells. |
| T2750 |
5666-5668 |
PRP |
denotes |
We |
| T2751 |
5669-5676 |
VBP |
denotes |
provide |
| T2752 |
5677-5685 |
NN |
denotes |
evidence |
| T2753 |
5686-5690 |
IN |
denotes |
that |
| T2754 |
5700-5708 |
VBN |
denotes |
required |
| T2755 |
5691-5694 |
NN |
denotes |
CAF |
| T2756 |
5694-5695 |
HYPH |
denotes |
- |
| T2757 |
5695-5696 |
CD |
denotes |
1 |
| T2758 |
5697-5699 |
VBZ |
denotes |
is |
| T2759 |
5709-5712 |
IN |
denotes |
for |
| T2760 |
5713-5716 |
DT |
denotes |
the |
| T2761 |
5725-5737 |
NN |
denotes |
organization |
| T2762 |
5717-5724 |
JJ |
denotes |
spatial |
| T2763 |
5738-5741 |
CC |
denotes |
and |
| T2764 |
5742-5752 |
JJ |
denotes |
epigenetic |
| T2765 |
5753-5760 |
NN |
denotes |
marking |
| T2766 |
5761-5763 |
IN |
denotes |
of |
| T2767 |
5764-5779 |
NN |
denotes |
heterochromatin |
| T2768 |
5780-5787 |
NNS |
denotes |
domains |
| T2769 |
5788-5790 |
IN |
denotes |
in |
| T2770 |
5791-5802 |
JJ |
denotes |
pluripotent |
| T2771 |
5813-5818 |
NNS |
denotes |
cells |
| T2772 |
5803-5812 |
JJ |
denotes |
embryonic |
| T2773 |
5818-5819 |
. |
denotes |
. |
| T7971 |
5829-5831 |
PRP |
denotes |
We |
| T7972 |
5832-5836 |
VBD |
denotes |
used |
| T7973 |
5837-5841 |
NN |
denotes |
gene |
| T7974 |
5842-5851 |
NN |
denotes |
targeting |
| T7975 |
5852-5854 |
IN |
denotes |
in |
| T7976 |
5855-5857 |
NN |
denotes |
ES |
| T7977 |
5858-5863 |
NNS |
denotes |
cells |
| T7978 |
5864-5866 |
TO |
denotes |
to |
| T7979 |
5867-5873 |
VB |
denotes |
delete |
| T7980 |
5874-5878 |
NN |
denotes |
exon |
| T7981 |
5879-5880 |
CD |
denotes |
3 |
| T7982 |
5881-5883 |
IN |
denotes |
in |
| T7983 |
5884-5887 |
DT |
denotes |
the |
| T7984 |
5895-5899 |
NN |
denotes |
gene |
| T7985 |
5888-5894 |
NN |
denotes |
Chaf1a |
| T7986 |
5899-5901 |
, |
denotes |
, |
| T7987 |
5901-5906 |
WDT |
denotes |
which |
| T7988 |
5907-5914 |
VBZ |
denotes |
encodes |
| T7989 |
5915-5922 |
NN |
denotes |
p150CAF |
| T7990 |
5922-5923 |
HYPH |
denotes |
- |
| T7991 |
5923-5924 |
CD |
denotes |
1 |
| T7992 |
5925-5926 |
-LRB- |
denotes |
( |
| T7993 |
5933-5935 |
NN |
denotes |
1A |
| T7994 |
5926-5932 |
NN |
denotes |
Figure |
| T7995 |
5935-5936 |
-RRB- |
denotes |
) |
| T7996 |
5936-5937 |
. |
denotes |
. |
| T7997 |
5937-6075 |
sentence |
denotes |
Chaf1a +/− mice were born at a Mendelian frequency, were of normal size and weight, displayed no obvious abnormalities, and were fertile. |
| T7998 |
5938-5944 |
NN |
denotes |
Chaf1a |
| T7999 |
5949-5953 |
NNS |
denotes |
mice |
| T8000 |
5945-5946 |
SYM |
denotes |
+ |
| T8001 |
5946-5947 |
HYPH |
denotes |
/ |
| T8002 |
5947-5948 |
SYM |
denotes |
− |
| T8003 |
5959-5963 |
VBN |
denotes |
born |
| T8004 |
5954-5958 |
VBD |
denotes |
were |
| T8005 |
5964-5966 |
IN |
denotes |
at |
| T8006 |
5967-5968 |
DT |
denotes |
a |
| T8007 |
5979-5988 |
NN |
denotes |
frequency |
| T8008 |
5969-5978 |
JJ |
denotes |
Mendelian |
| T8009 |
5988-5990 |
, |
denotes |
, |
| T8010 |
5990-5994 |
VBD |
denotes |
were |
| T8011 |
5995-5997 |
IN |
denotes |
of |
| T8012 |
5998-6004 |
JJ |
denotes |
normal |
| T8013 |
6005-6009 |
NN |
denotes |
size |
| T8014 |
6010-6013 |
CC |
denotes |
and |
| T8015 |
6014-6020 |
NN |
denotes |
weight |
| T8016 |
6020-6022 |
, |
denotes |
, |
| T8017 |
6022-6031 |
VBD |
denotes |
displayed |
| T8018 |
6032-6034 |
DT |
denotes |
no |
| T8019 |
6043-6056 |
NNS |
denotes |
abnormalities |
| T8020 |
6035-6042 |
JJ |
denotes |
obvious |
| T8021 |
6056-6058 |
, |
denotes |
, |
| T8022 |
6058-6061 |
CC |
denotes |
and |
| T8023 |
6062-6066 |
VBD |
denotes |
were |
| T8024 |
6067-6074 |
JJ |
denotes |
fertile |
| T8025 |
6074-6075 |
. |
denotes |
. |
| T8026 |
6075-6153 |
sentence |
denotes |
Crossing heterozygous mice failed to generate viable newborn Chaf1a −/− mice. |
| T8027 |
6076-6084 |
VBG |
denotes |
Crossing |
| T8028 |
6103-6109 |
VBD |
denotes |
failed |
| T8029 |
6085-6097 |
JJ |
denotes |
heterozygous |
| T8030 |
6098-6102 |
NNS |
denotes |
mice |
| T8031 |
6110-6112 |
TO |
denotes |
to |
| T8032 |
6113-6121 |
VB |
denotes |
generate |
| T8033 |
6122-6128 |
JJ |
denotes |
viable |
| T8034 |
6148-6152 |
NNS |
denotes |
mice |
| T8035 |
6129-6136 |
JJ |
denotes |
newborn |
| T8036 |
6137-6143 |
NN |
denotes |
Chaf1a |
| T8037 |
6144-6145 |
SYM |
denotes |
− |
| T8038 |
6145-6146 |
HYPH |
denotes |
/ |
| T8039 |
6146-6147 |
SYM |
denotes |
− |
| T8040 |
6152-6153 |
. |
denotes |
. |
| T8041 |
6153-6253 |
sentence |
denotes |
Furthermore, no homozygous Chaf1a −/− embryos were detected at any of the post-implantation stages. |
| T8042 |
6154-6165 |
RB |
denotes |
Furthermore |
| T8043 |
6205-6213 |
VBN |
denotes |
detected |
| T8044 |
6165-6167 |
, |
denotes |
, |
| T8045 |
6167-6169 |
DT |
denotes |
no |
| T8046 |
6192-6199 |
NNS |
denotes |
embryos |
| T8047 |
6170-6180 |
JJ |
denotes |
homozygous |
| T8048 |
6181-6187 |
NN |
denotes |
Chaf1a |
| T8049 |
6188-6189 |
SYM |
denotes |
− |
| T8050 |
6189-6190 |
HYPH |
denotes |
/ |
| T8051 |
6190-6191 |
SYM |
denotes |
− |
| T8052 |
6200-6204 |
VBD |
denotes |
were |
| T8053 |
6214-6216 |
IN |
denotes |
at |
| T8054 |
6217-6220 |
DT |
denotes |
any |
| T8055 |
6221-6223 |
IN |
denotes |
of |
| T8056 |
6224-6227 |
DT |
denotes |
the |
| T8057 |
6246-6252 |
NNS |
denotes |
stages |
| T8058 |
6228-6245 |
JJ |
denotes |
post-implantation |
| T8059 |
6252-6253 |
. |
denotes |
. |
| T8060 |
6253-6355 |
sentence |
denotes |
However, we could detect Chaf1a −/− embryos at embryonic day 4 (E4) using a PCR strategy (Figure 1B). |
| T8061 |
6254-6261 |
RB |
denotes |
However |
| T8062 |
6272-6278 |
VB |
denotes |
detect |
| T8063 |
6261-6263 |
, |
denotes |
, |
| T8064 |
6263-6265 |
PRP |
denotes |
we |
| T8065 |
6266-6271 |
MD |
denotes |
could |
| T8066 |
6279-6285 |
NN |
denotes |
Chaf1a |
| T8067 |
6290-6297 |
NNS |
denotes |
embryos |
| T8068 |
6286-6287 |
SYM |
denotes |
− |
| T8069 |
6287-6288 |
HYPH |
denotes |
/ |
| T8070 |
6288-6289 |
SYM |
denotes |
− |
| T8071 |
6298-6300 |
IN |
denotes |
at |
| T8072 |
6301-6310 |
JJ |
denotes |
embryonic |
| T8073 |
6311-6314 |
NN |
denotes |
day |
| T8074 |
6315-6316 |
CD |
denotes |
4 |
| T8075 |
6317-6318 |
-LRB- |
denotes |
( |
| T8076 |
6318-6320 |
NN |
denotes |
E4 |
| T8077 |
6320-6321 |
-RRB- |
denotes |
) |
| T8078 |
6322-6327 |
VBG |
denotes |
using |
| T8079 |
6328-6329 |
DT |
denotes |
a |
| T8080 |
6334-6342 |
NN |
denotes |
strategy |
| T8081 |
6330-6333 |
NN |
denotes |
PCR |
| T8082 |
6343-6344 |
-LRB- |
denotes |
( |
| T8083 |
6351-6353 |
NN |
denotes |
1B |
| T8084 |
6344-6350 |
NN |
denotes |
Figure |
| T8085 |
6353-6354 |
-RRB- |
denotes |
) |
| T8086 |
6354-6355 |
. |
denotes |
. |
| T8087 |
6355-6536 |
sentence |
denotes |
They represent only 10% of E4 embryos obtained from Chaf1a +/− mice intercrosses, suggesting that more than half of the homozygous mutant embryos had degenerated before this stage. |
| T8088 |
6356-6360 |
PRP |
denotes |
They |
| T8089 |
6361-6370 |
VBP |
denotes |
represent |
| T8090 |
6371-6375 |
RB |
denotes |
only |
| T8091 |
6376-6378 |
CD |
denotes |
10 |
| T8092 |
6378-6379 |
NN |
denotes |
% |
| T8093 |
6380-6382 |
IN |
denotes |
of |
| T8094 |
6383-6385 |
NN |
denotes |
E4 |
| T8095 |
6386-6393 |
NNS |
denotes |
embryos |
| T8096 |
6394-6402 |
VBN |
denotes |
obtained |
| T8097 |
6403-6407 |
IN |
denotes |
from |
| T8098 |
6408-6414 |
NN |
denotes |
Chaf1a |
| T8099 |
6424-6436 |
NNS |
denotes |
intercrosses |
| T8100 |
6415-6416 |
SYM |
denotes |
+ |
| T8101 |
6416-6417 |
HYPH |
denotes |
/ |
| T8102 |
6417-6418 |
SYM |
denotes |
− |
| T8103 |
6419-6423 |
NNS |
denotes |
mice |
| T8104 |
6436-6438 |
, |
denotes |
, |
| T8105 |
6438-6448 |
VBG |
denotes |
suggesting |
| T8106 |
6449-6453 |
IN |
denotes |
that |
| T8107 |
6506-6517 |
VBN |
denotes |
degenerated |
| T8108 |
6454-6458 |
JJR |
denotes |
more |
| T8109 |
6464-6468 |
NN |
denotes |
half |
| T8110 |
6459-6463 |
IN |
denotes |
than |
| T8111 |
6469-6471 |
IN |
denotes |
of |
| T8112 |
6472-6475 |
DT |
denotes |
the |
| T8113 |
6494-6501 |
NNS |
denotes |
embryos |
| T8114 |
6476-6486 |
JJ |
denotes |
homozygous |
| T8115 |
6487-6493 |
NN |
denotes |
mutant |
| T8116 |
6502-6505 |
VBD |
denotes |
had |
| T8117 |
6518-6524 |
IN |
denotes |
before |
| T8118 |
6525-6529 |
DT |
denotes |
this |
| T8119 |
6530-6535 |
NN |
denotes |
stage |
| T8120 |
6535-6536 |
. |
denotes |
. |
| T8121 |
6536-6702 |
sentence |
denotes |
Moreover, mutant embryos contained only eight to 16 cells at the E4 stage, instead of 32 cells observed for wild-type or heterozygous blastocysts (Figure 1C and 1D). |
| T8122 |
6537-6545 |
RB |
denotes |
Moreover |
| T8123 |
6562-6571 |
VBD |
denotes |
contained |
| T8124 |
6545-6547 |
, |
denotes |
, |
| T8125 |
6547-6553 |
NN |
denotes |
mutant |
| T8126 |
6554-6561 |
NNS |
denotes |
embryos |
| T8127 |
6572-6576 |
RB |
denotes |
only |
| T8128 |
6586-6588 |
CD |
denotes |
16 |
| T8129 |
6577-6582 |
CD |
denotes |
eight |
| T8130 |
6583-6585 |
IN |
denotes |
to |
| T8131 |
6589-6594 |
NNS |
denotes |
cells |
| T8132 |
6595-6597 |
IN |
denotes |
at |
| T8133 |
6598-6601 |
DT |
denotes |
the |
| T8134 |
6605-6610 |
NN |
denotes |
stage |
| T8135 |
6602-6604 |
NN |
denotes |
E4 |
| T8136 |
6610-6612 |
, |
denotes |
, |
| T8137 |
6612-6619 |
RB |
denotes |
instead |
| T8138 |
6620-6622 |
IN |
denotes |
of |
| T8139 |
6623-6625 |
CD |
denotes |
32 |
| T8140 |
6626-6631 |
NNS |
denotes |
cells |
| T8141 |
6632-6640 |
VBN |
denotes |
observed |
| T8142 |
6641-6644 |
IN |
denotes |
for |
| T8143 |
6645-6649 |
JJ |
denotes |
wild |
| T8144 |
6650-6654 |
NN |
denotes |
type |
| T8145 |
6649-6650 |
HYPH |
denotes |
- |
| T8146 |
6671-6682 |
NNS |
denotes |
blastocysts |
| T8147 |
6655-6657 |
CC |
denotes |
or |
| T8148 |
6658-6670 |
JJ |
denotes |
heterozygous |
| T8149 |
6683-6684 |
-LRB- |
denotes |
( |
| T8150 |
6691-6693 |
NN |
denotes |
1C |
| T8151 |
6684-6690 |
NN |
denotes |
Figure |
| T8152 |
6694-6697 |
CC |
denotes |
and |
| T8153 |
6698-6700 |
NN |
denotes |
1D |
| T8154 |
6700-6701 |
-RRB- |
denotes |
) |
| T8155 |
6701-6702 |
. |
denotes |
. |
| T8156 |
6702-6833 |
sentence |
denotes |
Further analysis by light microscopy using immunofluorescence (IF) allowed us to compare wild-type and p150CAF-1-depleted embryos. |
| T8157 |
6703-6710 |
JJ |
denotes |
Further |
| T8158 |
6711-6719 |
NN |
denotes |
analysis |
| T8159 |
6770-6777 |
VBD |
denotes |
allowed |
| T8160 |
6720-6722 |
IN |
denotes |
by |
| T8161 |
6723-6728 |
NN |
denotes |
light |
| T8162 |
6729-6739 |
NN |
denotes |
microscopy |
| T8163 |
6740-6745 |
VBG |
denotes |
using |
| T8164 |
6746-6764 |
NN |
denotes |
immunofluorescence |
| T8165 |
6765-6766 |
-LRB- |
denotes |
( |
| T8166 |
6766-6768 |
NN |
denotes |
IF |
| T8167 |
6768-6769 |
-RRB- |
denotes |
) |
| T8168 |
6778-6780 |
PRP |
denotes |
us |
| T8169 |
6784-6791 |
VB |
denotes |
compare |
| T8170 |
6781-6783 |
TO |
denotes |
to |
| T8171 |
6792-6796 |
JJ |
denotes |
wild |
| T8172 |
6797-6801 |
NN |
denotes |
type |
| T8173 |
6796-6797 |
HYPH |
denotes |
- |
| T8174 |
6825-6832 |
NNS |
denotes |
embryos |
| T8175 |
6802-6805 |
CC |
denotes |
and |
| T8176 |
6806-6813 |
NN |
denotes |
p150CAF |
| T8177 |
6816-6824 |
VBN |
denotes |
depleted |
| T8178 |
6813-6814 |
HYPH |
denotes |
- |
| T8179 |
6814-6815 |
CD |
denotes |
1 |
| T8180 |
6815-6816 |
HYPH |
denotes |
- |
| T8181 |
6832-6833 |
. |
denotes |
. |
| T8182 |
6833-7030 |
sentence |
denotes |
A loss of p150CAF-1 staining could not be detected before the eight-cell stage (unpublished data) suggesting that maternally contributed protein is present in the embryo up to the four-cell stage. |
| T8183 |
6834-6835 |
DT |
denotes |
A |
| T8184 |
6836-6840 |
NN |
denotes |
loss |
| T8185 |
6876-6884 |
VBN |
denotes |
detected |
| T8186 |
6841-6843 |
IN |
denotes |
of |
| T8187 |
6844-6851 |
NN |
denotes |
p150CAF |
| T8188 |
6854-6862 |
NN |
denotes |
staining |
| T8189 |
6851-6852 |
HYPH |
denotes |
- |
| T8190 |
6852-6853 |
CD |
denotes |
1 |
| T8191 |
6863-6868 |
MD |
denotes |
could |
| T8192 |
6869-6872 |
RB |
denotes |
not |
| T8193 |
6873-6875 |
VB |
denotes |
be |
| T8194 |
6885-6891 |
IN |
denotes |
before |
| T8195 |
6892-6895 |
DT |
denotes |
the |
| T8196 |
6907-6912 |
NN |
denotes |
stage |
| T8197 |
6896-6901 |
CD |
denotes |
eight |
| T8198 |
6902-6906 |
NN |
denotes |
cell |
| T8199 |
6901-6902 |
HYPH |
denotes |
- |
| T8200 |
6913-6914 |
-LRB- |
denotes |
( |
| T8201 |
6926-6930 |
NNS |
denotes |
data |
| T8202 |
6914-6925 |
JJ |
denotes |
unpublished |
| T8203 |
6930-6931 |
-RRB- |
denotes |
) |
| T8204 |
6932-6942 |
VBG |
denotes |
suggesting |
| T8205 |
6943-6947 |
IN |
denotes |
that |
| T8206 |
6979-6981 |
VBZ |
denotes |
is |
| T8207 |
6948-6958 |
RB |
denotes |
maternally |
| T8208 |
6959-6970 |
VBN |
denotes |
contributed |
| T8209 |
6971-6978 |
NN |
denotes |
protein |
| T8210 |
6982-6989 |
JJ |
denotes |
present |
| T8211 |
6990-6992 |
IN |
denotes |
in |
| T8212 |
6993-6996 |
DT |
denotes |
the |
| T8213 |
6997-7003 |
NN |
denotes |
embryo |
| T8214 |
7004-7006 |
IN |
denotes |
up |
| T8215 |
7007-7009 |
IN |
denotes |
to |
| T8216 |
7010-7013 |
DT |
denotes |
the |
| T8217 |
7024-7029 |
NN |
denotes |
stage |
| T8218 |
7014-7018 |
CD |
denotes |
four |
| T8219 |
7019-7023 |
NN |
denotes |
cell |
| T8220 |
7018-7019 |
HYPH |
denotes |
- |
| T8221 |
7029-7030 |
. |
denotes |
. |
| T8222 |
7030-7162 |
sentence |
denotes |
Thus, depletion of p150CAF-1 protein from this stage allows a maximum of two additional cell divisions before developmental arrest. |
| T8223 |
7031-7035 |
RB |
denotes |
Thus |
| T8224 |
7084-7090 |
VBZ |
denotes |
allows |
| T8225 |
7035-7037 |
, |
denotes |
, |
| T8226 |
7037-7046 |
NN |
denotes |
depletion |
| T8227 |
7047-7049 |
IN |
denotes |
of |
| T8228 |
7050-7057 |
NN |
denotes |
p150CAF |
| T8229 |
7060-7067 |
NN |
denotes |
protein |
| T8230 |
7057-7058 |
HYPH |
denotes |
- |
| T8231 |
7058-7059 |
CD |
denotes |
1 |
| T8232 |
7068-7072 |
IN |
denotes |
from |
| T8233 |
7073-7077 |
DT |
denotes |
this |
| T8234 |
7078-7083 |
NN |
denotes |
stage |
| T8235 |
7091-7092 |
DT |
denotes |
a |
| T8236 |
7093-7100 |
NN |
denotes |
maximum |
| T8237 |
7101-7103 |
IN |
denotes |
of |
| T8238 |
7104-7107 |
CD |
denotes |
two |
| T8239 |
7124-7133 |
NNS |
denotes |
divisions |
| T8240 |
7108-7118 |
JJ |
denotes |
additional |
| T8241 |
7119-7123 |
NN |
denotes |
cell |
| T8242 |
7134-7140 |
IN |
denotes |
before |
| T8243 |
7141-7154 |
JJ |
denotes |
developmental |
| T8244 |
7155-7161 |
NN |
denotes |
arrest |
| T8245 |
7161-7162 |
. |
denotes |
. |
| T8246 |
7162-9849 |
sentence |
denotes |
Figure 1 Loss of p150CAF-1 Function Leads to Early Developmental Arrest and Alteration of Heterochromatin Organization
(A) Generation of Chaf1a +/− mice by homologous recombination in ES cells. (Top) Scheme of the p150CAF1 protein indicating the interacting domains (ID) for HP1 and p60CAF-1, and the acidic domain (AD). (Middle) Structure of the murine Chaf1a gene. Blocks and lines represent exons and introns, respectively. A star indicates the translation initiation site. Below is shown the Chaf1a targeting vector, which includes genomic DNA homology regions (5 HR and 3 HR), the diphtheria toxin (DT), and neomycin selection genes. Recombined (Rec) ES cells and mice were identified by Southern blot using ScaI (S) and the indicated probe.
(B) Breeding strategy used for the production of E4 Chaf1a −/− embryos. Genotyping was performed by PCR using the three oligonucleotide primers indicated in (A) (1, 2, and 3). An example of the result of a genotyping experiment is shown.
(C) Immunodetection of p150CAF-1 (green) and HP1α (red) in E4 embryos derived from Chaf1a +/− intercrosses. Because Chaf1a +/+ and Chaf1a +/− embryos both stain positively for the presence of p150CAF-1, they are both designated as wild-type. p150CAF-1 expression, which indicates ongoing S phase, can be detected in most cells within the wild-type blastocyst (upper panel). The lower panel shows a 12-cell embryo labeling negatively for p150CAF-1. Only nonspecific background labeling can be observed. In each panel, the right-hand image shows the merge between the HP1α fluorescence and DAPI-stained DNA in blue. Pink color indicates the association of HP1 with DAPI-dense material. The bottom of each panel shows the magnification of a nucleus selected from the above embryo (white square). The arrowhead indicates the typical heterochromatin foci revealed by DAPI and HP1α staining in wild-type embryos. These foci are not visible in Chaf1a −/− embryos. DAPI and HP1α staining are diffuse within the nucleus of p150CAF-1-depleted embryos, with enrichment at the nuclear periphery, revealing abnormal heterochromatin organization. Scale bars represent 10 μm.
(E) Wild-type embryos isolated at embryonic day 2 (E2, two cells), E2.5 (four cells), E3 (eight cells), E3.5 (16 cells), and E4 (32 cells) are shown. Heterochromatin was monitored by DAPI staining (upper panel) and HP1 immunolabeling (in red, lower panel).
(F) Magnification of a nucleus (DAPI-stained) representative of each stage. The right-hand panel shows the nucleus of an ES cell. Scale bar represents 10 μm. Strikingly, we found that the nuclear organization of heterochromatin appeared abnormal in the nuclei of Chaf1a −/− embryos. |
| T8247 |
9725-9735 |
RB |
denotes |
Strikingly |
| T8248 |
9740-9745 |
VBD |
denotes |
found |
| T8249 |
9735-9737 |
, |
denotes |
, |
| T8250 |
9737-9739 |
PRP |
denotes |
we |
| T8251 |
9746-9750 |
IN |
denotes |
that |
| T8252 |
9795-9803 |
VBD |
denotes |
appeared |
| T8253 |
9751-9754 |
DT |
denotes |
the |
| T8254 |
9763-9775 |
NN |
denotes |
organization |
| T8255 |
9755-9762 |
JJ |
denotes |
nuclear |
| T8256 |
9776-9778 |
IN |
denotes |
of |
| T8257 |
9779-9794 |
NN |
denotes |
heterochromatin |
| T8258 |
9804-9812 |
JJ |
denotes |
abnormal |
| T8259 |
9813-9815 |
IN |
denotes |
in |
| T8260 |
9816-9819 |
DT |
denotes |
the |
| T8261 |
9820-9826 |
NNS |
denotes |
nuclei |
| T8262 |
9827-9829 |
IN |
denotes |
of |
| T8263 |
9830-9836 |
NN |
denotes |
Chaf1a |
| T8264 |
9841-9848 |
NNS |
denotes |
embryos |
| T8265 |
9837-9838 |
SYM |
denotes |
− |
| T8266 |
9838-9839 |
HYPH |
denotes |
/ |
| T8267 |
9839-9840 |
SYM |
denotes |
− |
| T8268 |
9848-9849 |
. |
denotes |
. |
| T8269 |
9849-10046 |
sentence |
denotes |
Pericentric heterochromatin, the major component of constitutive heterochromatin, can easily be visualized in interphase nuclei by the fluorochrome DAPI and by immunostaining with HP1α [16,17–19]. |
| T8270 |
9850-9861 |
JJ |
denotes |
Pericentric |
| T8271 |
9862-9877 |
NN |
denotes |
heterochromatin |
| T8272 |
9946-9956 |
VBN |
denotes |
visualized |
| T8273 |
9877-9879 |
, |
denotes |
, |
| T8274 |
9879-9882 |
DT |
denotes |
the |
| T8275 |
9889-9898 |
NN |
denotes |
component |
| T8276 |
9883-9888 |
JJ |
denotes |
major |
| T8277 |
9899-9901 |
IN |
denotes |
of |
| T8278 |
9902-9914 |
JJ |
denotes |
constitutive |
| T8279 |
9915-9930 |
NN |
denotes |
heterochromatin |
| T8280 |
9930-9932 |
, |
denotes |
, |
| T8281 |
9932-9935 |
MD |
denotes |
can |
| T8282 |
9936-9942 |
RB |
denotes |
easily |
| T8283 |
9943-9945 |
VB |
denotes |
be |
| T8284 |
9957-9959 |
IN |
denotes |
in |
| T8285 |
9960-9970 |
NN |
denotes |
interphase |
| T8286 |
9971-9977 |
NNS |
denotes |
nuclei |
| T8287 |
9978-9980 |
IN |
denotes |
by |
| T8288 |
9981-9984 |
DT |
denotes |
the |
| T8289 |
9998-10002 |
NN |
denotes |
DAPI |
| T8290 |
9985-9997 |
NN |
denotes |
fluorochrome |
| T8291 |
10003-10006 |
CC |
denotes |
and |
| T8292 |
10007-10009 |
IN |
denotes |
by |
| T8293 |
10010-10024 |
VBG |
denotes |
immunostaining |
| T8294 |
10025-10029 |
IN |
denotes |
with |
| T8295 |
10030-10034 |
NN |
denotes |
HP1α |
| T8296 |
10035-10036 |
-LRB- |
denotes |
[ |
| T8297 |
10036-10038 |
CD |
denotes |
16 |
| T8298 |
10038-10039 |
, |
denotes |
, |
| T8299 |
10039-10041 |
CD |
denotes |
17 |
| T8300 |
10041-10042 |
SYM |
denotes |
– |
| T8301 |
10042-10044 |
CD |
denotes |
19 |
| T8302 |
10044-10045 |
-RRB- |
denotes |
] |
| T8303 |
10045-10046 |
. |
denotes |
. |
| T8304 |
10046-10275 |
sentence |
denotes |
In wild-type blastocysts and in mouse somatic cells, pericentric heterochromatin domains cluster together and form higher-order chromatin structures called chromocenters [20], which are visualized as DAPI-dense foci (Figure 1C). |
| T8305 |
10047-10049 |
IN |
denotes |
In |
| T8306 |
10136-10143 |
VBP |
denotes |
cluster |
| T8307 |
10050-10054 |
JJ |
denotes |
wild |
| T8308 |
10055-10059 |
NN |
denotes |
type |
| T8309 |
10054-10055 |
HYPH |
denotes |
- |
| T8310 |
10060-10071 |
NNS |
denotes |
blastocysts |
| T8311 |
10072-10075 |
CC |
denotes |
and |
| T8312 |
10076-10078 |
IN |
denotes |
in |
| T8313 |
10079-10084 |
NN |
denotes |
mouse |
| T8314 |
10093-10098 |
NNS |
denotes |
cells |
| T8315 |
10085-10092 |
JJ |
denotes |
somatic |
| T8316 |
10098-10100 |
, |
denotes |
, |
| T8317 |
10100-10111 |
JJ |
denotes |
pericentric |
| T8318 |
10128-10135 |
NNS |
denotes |
domains |
| T8319 |
10112-10127 |
NN |
denotes |
heterochromatin |
| T8320 |
10144-10152 |
RB |
denotes |
together |
| T8321 |
10153-10156 |
CC |
denotes |
and |
| T8322 |
10157-10161 |
VBP |
denotes |
form |
| T8323 |
10162-10168 |
JJR |
denotes |
higher |
| T8324 |
10169-10174 |
NN |
denotes |
order |
| T8325 |
10168-10169 |
HYPH |
denotes |
- |
| T8326 |
10185-10195 |
NNS |
denotes |
structures |
| T8327 |
10175-10184 |
NN |
denotes |
chromatin |
| T8328 |
10196-10202 |
VBN |
denotes |
called |
| T8329 |
10203-10216 |
NNS |
denotes |
chromocenters |
| T8330 |
10217-10218 |
-LRB- |
denotes |
[ |
| T8331 |
10218-10220 |
CD |
denotes |
20 |
| T8332 |
10220-10221 |
-RRB- |
denotes |
] |
| T8333 |
10221-10223 |
, |
denotes |
, |
| T8334 |
10223-10228 |
WDT |
denotes |
which |
| T8335 |
10233-10243 |
VBN |
denotes |
visualized |
| T8336 |
10229-10232 |
VBP |
denotes |
are |
| T8337 |
10244-10246 |
IN |
denotes |
as |
| T8338 |
10247-10251 |
NN |
denotes |
DAPI |
| T8339 |
10252-10257 |
JJ |
denotes |
dense |
| T8340 |
10251-10252 |
HYPH |
denotes |
- |
| T8341 |
10258-10262 |
NNS |
denotes |
foci |
| T8342 |
10263-10264 |
-LRB- |
denotes |
( |
| T8343 |
10271-10273 |
NN |
denotes |
1C |
| T8344 |
10264-10270 |
NN |
denotes |
Figure |
| T8345 |
10273-10274 |
-RRB- |
denotes |
) |
| T8346 |
10274-10275 |
. |
denotes |
. |
| T8347 |
10275-10345 |
sentence |
denotes |
These structures were not detected in Chaf1a −/− embryos (Figure 1D). |
| T8348 |
10276-10281 |
DT |
denotes |
These |
| T8349 |
10282-10292 |
NNS |
denotes |
structures |
| T8350 |
10302-10310 |
VBN |
denotes |
detected |
| T8351 |
10293-10297 |
VBD |
denotes |
were |
| T8352 |
10298-10301 |
RB |
denotes |
not |
| T8353 |
10311-10313 |
IN |
denotes |
in |
| T8354 |
10314-10320 |
NN |
denotes |
Chaf1a |
| T8355 |
10325-10332 |
NNS |
denotes |
embryos |
| T8356 |
10321-10322 |
SYM |
denotes |
− |
| T8357 |
10322-10323 |
HYPH |
denotes |
/ |
| T8358 |
10323-10324 |
SYM |
denotes |
− |
| T8359 |
10333-10334 |
-LRB- |
denotes |
( |
| T8360 |
10341-10343 |
NN |
denotes |
1D |
| T8361 |
10334-10340 |
NN |
denotes |
Figure |
| T8362 |
10343-10344 |
-RRB- |
denotes |
) |
| T8363 |
10344-10345 |
. |
denotes |
. |
| T8364 |
10345-10500 |
sentence |
denotes |
Since chromatin architecture and higher-order structures are important for genome function [21], we decided to characterize this phenotype in more detail. |
| T8365 |
10346-10351 |
IN |
denotes |
Since |
| T8366 |
10403-10406 |
VBP |
denotes |
are |
| T8367 |
10352-10361 |
NN |
denotes |
chromatin |
| T8368 |
10362-10374 |
NN |
denotes |
architecture |
| T8369 |
10375-10378 |
CC |
denotes |
and |
| T8370 |
10379-10385 |
JJR |
denotes |
higher |
| T8371 |
10386-10391 |
NN |
denotes |
order |
| T8372 |
10385-10386 |
HYPH |
denotes |
- |
| T8373 |
10392-10402 |
NNS |
denotes |
structures |
| T8374 |
10446-10453 |
VBD |
denotes |
decided |
| T8375 |
10407-10416 |
JJ |
denotes |
important |
| T8376 |
10417-10420 |
IN |
denotes |
for |
| T8377 |
10421-10427 |
NN |
denotes |
genome |
| T8378 |
10428-10436 |
NN |
denotes |
function |
| T8379 |
10437-10438 |
-LRB- |
denotes |
[ |
| T8380 |
10438-10440 |
CD |
denotes |
21 |
| T8381 |
10440-10441 |
-RRB- |
denotes |
] |
| T8382 |
10441-10443 |
, |
denotes |
, |
| T8383 |
10443-10445 |
PRP |
denotes |
we |
| T8384 |
10454-10456 |
TO |
denotes |
to |
| T8385 |
10457-10469 |
VB |
denotes |
characterize |
| T8386 |
10470-10474 |
DT |
denotes |
this |
| T8387 |
10475-10484 |
NN |
denotes |
phenotype |
| T8388 |
10485-10487 |
IN |
denotes |
in |
| T8389 |
10488-10492 |
JJR |
denotes |
more |
| T8390 |
10493-10499 |
NN |
denotes |
detail |
| T8391 |
10499-10500 |
. |
denotes |
. |
| T8392 |
10500-10617 |
sentence |
denotes |
For this purpose, we examined the status of heterochromatin organization between the two-cell and blastocyst stages. |
| T8393 |
10501-10504 |
IN |
denotes |
For |
| T8394 |
10522-10530 |
VBD |
denotes |
examined |
| T8395 |
10505-10509 |
DT |
denotes |
this |
| T8396 |
10510-10517 |
NN |
denotes |
purpose |
| T8397 |
10517-10519 |
, |
denotes |
, |
| T8398 |
10519-10521 |
PRP |
denotes |
we |
| T8399 |
10531-10534 |
DT |
denotes |
the |
| T8400 |
10535-10541 |
NN |
denotes |
status |
| T8401 |
10542-10544 |
IN |
denotes |
of |
| T8402 |
10545-10560 |
NN |
denotes |
heterochromatin |
| T8403 |
10561-10573 |
NN |
denotes |
organization |
| T8404 |
10574-10581 |
IN |
denotes |
between |
| T8405 |
10582-10585 |
DT |
denotes |
the |
| T8406 |
10610-10616 |
NNS |
denotes |
stages |
| T8407 |
10586-10589 |
CD |
denotes |
two |
| T8408 |
10590-10594 |
NN |
denotes |
cell |
| T8409 |
10589-10590 |
HYPH |
denotes |
- |
| T8410 |
10595-10598 |
CC |
denotes |
and |
| T8411 |
10599-10609 |
NN |
denotes |
blastocyst |
| T8412 |
10616-10617 |
. |
denotes |
. |
| T8413 |
10617-10776 |
sentence |
denotes |
In two-cell stage wild-type embryos, DAPI staining is diffuse and fibrillar, with regions of higher density around the nucleolar precursor bodies (Figure 1E). |
| T8414 |
10618-10620 |
IN |
denotes |
In |
| T8415 |
10669-10671 |
VBZ |
denotes |
is |
| T8416 |
10621-10624 |
CD |
denotes |
two |
| T8417 |
10625-10629 |
NN |
denotes |
cell |
| T8418 |
10624-10625 |
HYPH |
denotes |
- |
| T8419 |
10630-10635 |
NN |
denotes |
stage |
| T8420 |
10646-10653 |
NNS |
denotes |
embryos |
| T8421 |
10636-10640 |
JJ |
denotes |
wild |
| T8422 |
10641-10645 |
NN |
denotes |
type |
| T8423 |
10640-10641 |
HYPH |
denotes |
- |
| T8424 |
10653-10655 |
, |
denotes |
, |
| T8425 |
10655-10659 |
NN |
denotes |
DAPI |
| T8426 |
10660-10668 |
NN |
denotes |
staining |
| T8427 |
10672-10679 |
JJ |
denotes |
diffuse |
| T8428 |
10680-10683 |
CC |
denotes |
and |
| T8429 |
10684-10693 |
JJ |
denotes |
fibrillar |
| T8430 |
10693-10695 |
, |
denotes |
, |
| T8431 |
10695-10699 |
IN |
denotes |
with |
| T8432 |
10700-10707 |
NNS |
denotes |
regions |
| T8433 |
10708-10710 |
IN |
denotes |
of |
| T8434 |
10711-10717 |
JJR |
denotes |
higher |
| T8435 |
10718-10725 |
NN |
denotes |
density |
| T8436 |
10726-10732 |
IN |
denotes |
around |
| T8437 |
10733-10736 |
DT |
denotes |
the |
| T8438 |
10757-10763 |
NNS |
denotes |
bodies |
| T8439 |
10737-10746 |
JJ |
denotes |
nucleolar |
| T8440 |
10747-10756 |
NN |
denotes |
precursor |
| T8441 |
10764-10765 |
-LRB- |
denotes |
( |
| T8442 |
10772-10774 |
NN |
denotes |
1E |
| T8443 |
10765-10771 |
NN |
denotes |
Figure |
| T8444 |
10774-10775 |
-RRB- |
denotes |
) |
| T8445 |
10775-10776 |
. |
denotes |
. |
| T8446 |
10776-10914 |
sentence |
denotes |
Heterochromatin domains are progressively assembled into DAPI-dense foci between the four-cell and 32-cell blastocyst stages (Figure 1F). |
| T8447 |
10777-10792 |
NN |
denotes |
Heterochromatin |
| T8448 |
10793-10800 |
NNS |
denotes |
domains |
| T8449 |
10819-10828 |
VBN |
denotes |
assembled |
| T8450 |
10801-10804 |
VBP |
denotes |
are |
| T8451 |
10805-10818 |
RB |
denotes |
progressively |
| T8452 |
10829-10833 |
IN |
denotes |
into |
| T8453 |
10834-10838 |
NN |
denotes |
DAPI |
| T8454 |
10839-10844 |
JJ |
denotes |
dense |
| T8455 |
10838-10839 |
HYPH |
denotes |
- |
| T8456 |
10845-10849 |
NNS |
denotes |
foci |
| T8457 |
10850-10857 |
IN |
denotes |
between |
| T8458 |
10858-10861 |
DT |
denotes |
the |
| T8459 |
10895-10901 |
NNS |
denotes |
stages |
| T8460 |
10862-10866 |
CD |
denotes |
four |
| T8461 |
10867-10871 |
NN |
denotes |
cell |
| T8462 |
10866-10867 |
HYPH |
denotes |
- |
| T8463 |
10872-10875 |
CC |
denotes |
and |
| T8464 |
10876-10878 |
CD |
denotes |
32 |
| T8465 |
10879-10883 |
NN |
denotes |
cell |
| T8466 |
10878-10879 |
HYPH |
denotes |
- |
| T8467 |
10884-10894 |
NN |
denotes |
blastocyst |
| T8468 |
10902-10903 |
-LRB- |
denotes |
( |
| T8469 |
10910-10912 |
NN |
denotes |
1F |
| T8470 |
10903-10909 |
NN |
denotes |
Figure |
| T8471 |
10912-10913 |
-RRB- |
denotes |
) |
| T8472 |
10913-10914 |
. |
denotes |
. |
| T8473 |
10914-11049 |
sentence |
denotes |
Localization of HP1α confirmed that the structures visualized by DAPI staining correspond to constitutive heterochromatin (Figure 1E). |
| T8474 |
10915-10927 |
NN |
denotes |
Localization |
| T8475 |
10936-10945 |
VBD |
denotes |
confirmed |
| T8476 |
10928-10930 |
IN |
denotes |
of |
| T8477 |
10931-10935 |
NN |
denotes |
HP1α |
| T8478 |
10946-10950 |
IN |
denotes |
that |
| T8479 |
10994-11004 |
VBP |
denotes |
correspond |
| T8480 |
10951-10954 |
DT |
denotes |
the |
| T8481 |
10955-10965 |
NNS |
denotes |
structures |
| T8482 |
10966-10976 |
VBN |
denotes |
visualized |
| T8483 |
10977-10979 |
IN |
denotes |
by |
| T8484 |
10980-10984 |
NN |
denotes |
DAPI |
| T8485 |
10985-10993 |
NN |
denotes |
staining |
| T8486 |
11005-11007 |
IN |
denotes |
to |
| T8487 |
11008-11020 |
JJ |
denotes |
constitutive |
| T8488 |
11021-11036 |
NN |
denotes |
heterochromatin |
| T8489 |
11037-11038 |
-LRB- |
denotes |
( |
| T8490 |
11045-11047 |
NN |
denotes |
1E |
| T8491 |
11038-11044 |
NN |
denotes |
Figure |
| T8492 |
11047-11048 |
-RRB- |
denotes |
) |
| T8493 |
11048-11049 |
. |
denotes |
. |
| T8494 |
11049-11205 |
sentence |
denotes |
Thus, the nuclear organization of heterochromatin is dramatically modified during pre-implantation development, between the two-cell and blastocyst stages. |
| T8495 |
11050-11054 |
RB |
denotes |
Thus |
| T8496 |
11116-11124 |
VBN |
denotes |
modified |
| T8497 |
11054-11056 |
, |
denotes |
, |
| T8498 |
11056-11059 |
DT |
denotes |
the |
| T8499 |
11068-11080 |
NN |
denotes |
organization |
| T8500 |
11060-11067 |
JJ |
denotes |
nuclear |
| T8501 |
11081-11083 |
IN |
denotes |
of |
| T8502 |
11084-11099 |
NN |
denotes |
heterochromatin |
| T8503 |
11100-11102 |
VBZ |
denotes |
is |
| T8504 |
11103-11115 |
RB |
denotes |
dramatically |
| T8505 |
11125-11131 |
IN |
denotes |
during |
| T8506 |
11132-11148 |
JJ |
denotes |
pre-implantation |
| T8507 |
11149-11160 |
NN |
denotes |
development |
| T8508 |
11160-11162 |
, |
denotes |
, |
| T8509 |
11162-11169 |
IN |
denotes |
between |
| T8510 |
11170-11173 |
DT |
denotes |
the |
| T8511 |
11198-11204 |
NNS |
denotes |
stages |
| T8512 |
11174-11177 |
CD |
denotes |
two |
| T8513 |
11178-11182 |
NN |
denotes |
cell |
| T8514 |
11177-11178 |
HYPH |
denotes |
- |
| T8515 |
11183-11186 |
CC |
denotes |
and |
| T8516 |
11187-11197 |
NN |
denotes |
blastocyst |
| T8517 |
11204-11205 |
. |
denotes |
. |
| T8518 |
11205-11340 |
sentence |
denotes |
In Chaf1a −/− E4 embryos, which are arrested between the eight- and 16-cell stage, DAPI-dense foci were barely detectable (Figure 1D). |
| T8519 |
11206-11208 |
IN |
denotes |
In |
| T8520 |
11305-11309 |
VBD |
denotes |
were |
| T8521 |
11209-11215 |
NN |
denotes |
Chaf1a |
| T8522 |
11223-11230 |
NNS |
denotes |
embryos |
| T8523 |
11216-11217 |
SYM |
denotes |
− |
| T8524 |
11217-11218 |
HYPH |
denotes |
/ |
| T8525 |
11218-11219 |
SYM |
denotes |
− |
| T8526 |
11220-11222 |
NN |
denotes |
E4 |
| T8527 |
11230-11232 |
, |
denotes |
, |
| T8528 |
11232-11237 |
WDT |
denotes |
which |
| T8529 |
11242-11250 |
VBN |
denotes |
arrested |
| T8530 |
11238-11241 |
VBP |
denotes |
are |
| T8531 |
11251-11258 |
IN |
denotes |
between |
| T8532 |
11259-11262 |
DT |
denotes |
the |
| T8533 |
11282-11287 |
NN |
denotes |
stage |
| T8534 |
11263-11268 |
CD |
denotes |
eight |
| T8535 |
11277-11281 |
NN |
denotes |
cell |
| T8536 |
11268-11269 |
HYPH |
denotes |
- |
| T8537 |
11270-11273 |
CC |
denotes |
and |
| T8539 |
11276-11277 |
HYPH |
denotes |
- |
| T8540 |
11287-11289 |
, |
denotes |
, |
| T8541 |
11289-11293 |
NN |
denotes |
DAPI |
| T8542 |
11294-11299 |
JJ |
denotes |
dense |
| T8543 |
11293-11294 |
HYPH |
denotes |
- |
| T8544 |
11300-11304 |
NNS |
denotes |
foci |
| T8545 |
11310-11316 |
RB |
denotes |
barely |
| T8546 |
11317-11327 |
JJ |
denotes |
detectable |
| T8547 |
11328-11329 |
-LRB- |
denotes |
( |
| T8548 |
11336-11338 |
NN |
denotes |
1D |
| T8549 |
11329-11335 |
NN |
denotes |
Figure |
| T8550 |
11338-11339 |
-RRB- |
denotes |
) |
| T8551 |
11339-11340 |
. |
denotes |
. |
| T8552 |
11340-11494 |
sentence |
denotes |
Instead, DAPI staining was diffuse within the nucleus, with regions of higher density around the nucleoli and at the periphery of the nuclei (Figure 1D). |
| T8553 |
11341-11348 |
RB |
denotes |
Instead |
| T8554 |
11364-11367 |
VBD |
denotes |
was |
| T8555 |
11348-11350 |
, |
denotes |
, |
| T8556 |
11350-11354 |
NN |
denotes |
DAPI |
| T8557 |
11355-11363 |
NN |
denotes |
staining |
| T8558 |
11368-11375 |
JJ |
denotes |
diffuse |
| T8559 |
11376-11382 |
IN |
denotes |
within |
| T8560 |
11383-11386 |
DT |
denotes |
the |
| T8561 |
11387-11394 |
NN |
denotes |
nucleus |
| T8562 |
11394-11396 |
, |
denotes |
, |
| T8563 |
11396-11400 |
IN |
denotes |
with |
| T8564 |
11401-11408 |
NNS |
denotes |
regions |
| T8565 |
11409-11411 |
IN |
denotes |
of |
| T8566 |
11412-11418 |
JJR |
denotes |
higher |
| T8567 |
11419-11426 |
NN |
denotes |
density |
| T8568 |
11427-11433 |
IN |
denotes |
around |
| T8569 |
11434-11437 |
DT |
denotes |
the |
| T8570 |
11438-11446 |
NNS |
denotes |
nucleoli |
| T8571 |
11447-11450 |
CC |
denotes |
and |
| T8572 |
11451-11453 |
IN |
denotes |
at |
| T8573 |
11454-11457 |
DT |
denotes |
the |
| T8574 |
11458-11467 |
NN |
denotes |
periphery |
| T8575 |
11468-11470 |
IN |
denotes |
of |
| T8576 |
11471-11474 |
DT |
denotes |
the |
| T8577 |
11475-11481 |
NNS |
denotes |
nuclei |
| T8578 |
11482-11483 |
-LRB- |
denotes |
( |
| T8579 |
11490-11492 |
NN |
denotes |
1D |
| T8580 |
11483-11489 |
NN |
denotes |
Figure |
| T8581 |
11492-11493 |
-RRB- |
denotes |
) |
| T8582 |
11493-11494 |
. |
denotes |
. |
| T8583 |
11494-11645 |
sentence |
denotes |
Localization of HP1α showed a diffuse pattern similar to the DAPI, with some enrichment at the nuclear periphery, and around the nucleoli (Figure 1D). |
| T8584 |
11495-11507 |
NN |
denotes |
Localization |
| T8585 |
11516-11522 |
VBD |
denotes |
showed |
| T8586 |
11508-11510 |
IN |
denotes |
of |
| T8587 |
11511-11515 |
NN |
denotes |
HP1α |
| T8588 |
11523-11524 |
DT |
denotes |
a |
| T8589 |
11533-11540 |
NN |
denotes |
pattern |
| T8590 |
11525-11532 |
JJ |
denotes |
diffuse |
| T8591 |
11541-11548 |
JJ |
denotes |
similar |
| T8592 |
11549-11551 |
IN |
denotes |
to |
| T8593 |
11552-11555 |
DT |
denotes |
the |
| T8594 |
11556-11560 |
NN |
denotes |
DAPI |
| T8595 |
11560-11562 |
, |
denotes |
, |
| T8596 |
11562-11566 |
IN |
denotes |
with |
| T8597 |
11567-11571 |
DT |
denotes |
some |
| T8598 |
11572-11582 |
NN |
denotes |
enrichment |
| T8599 |
11583-11585 |
IN |
denotes |
at |
| T8600 |
11586-11589 |
DT |
denotes |
the |
| T8601 |
11598-11607 |
NN |
denotes |
periphery |
| T8602 |
11590-11597 |
JJ |
denotes |
nuclear |
| T8603 |
11607-11609 |
, |
denotes |
, |
| T8604 |
11609-11612 |
CC |
denotes |
and |
| T8605 |
11613-11619 |
IN |
denotes |
around |
| T8606 |
11620-11623 |
DT |
denotes |
the |
| T8607 |
11624-11632 |
NNS |
denotes |
nucleoli |
| T8608 |
11633-11634 |
-LRB- |
denotes |
( |
| T8609 |
11641-11643 |
NN |
denotes |
1D |
| T8610 |
11634-11640 |
NN |
denotes |
Figure |
| T8611 |
11643-11644 |
-RRB- |
denotes |
) |
| T8612 |
11644-11645 |
. |
denotes |
. |
| T8613 |
11645-11843 |
sentence |
denotes |
This abnormal organization of heterochromatin in Chaf1a −/− embryos is reminiscent of the heterochromatin organization found in two- to four-cell stage wild-type embryos (compare Figure 1D and 1F). |
| T8614 |
11646-11650 |
DT |
denotes |
This |
| T8615 |
11660-11672 |
NN |
denotes |
organization |
| T8616 |
11651-11659 |
JJ |
denotes |
abnormal |
| T8617 |
11714-11716 |
VBZ |
denotes |
is |
| T8618 |
11673-11675 |
IN |
denotes |
of |
| T8619 |
11676-11691 |
NN |
denotes |
heterochromatin |
| T8620 |
11692-11694 |
IN |
denotes |
in |
| T8621 |
11695-11701 |
NN |
denotes |
Chaf1a |
| T8622 |
11706-11713 |
NNS |
denotes |
embryos |
| T8623 |
11702-11703 |
SYM |
denotes |
− |
| T8624 |
11703-11704 |
HYPH |
denotes |
/ |
| T8625 |
11704-11705 |
SYM |
denotes |
− |
| T8626 |
11717-11728 |
JJ |
denotes |
reminiscent |
| T8627 |
11729-11731 |
IN |
denotes |
of |
| T8628 |
11732-11735 |
DT |
denotes |
the |
| T8629 |
11752-11764 |
NN |
denotes |
organization |
| T8630 |
11736-11751 |
NN |
denotes |
heterochromatin |
| T8631 |
11765-11770 |
VBN |
denotes |
found |
| T8632 |
11771-11773 |
IN |
denotes |
in |
| T8633 |
11774-11777 |
CD |
denotes |
two |
| T8634 |
11782-11786 |
CD |
denotes |
four |
| T8635 |
11777-11778 |
HYPH |
denotes |
- |
| T8636 |
11779-11781 |
IN |
denotes |
to |
| T8637 |
11787-11791 |
NN |
denotes |
cell |
| T8638 |
11786-11787 |
HYPH |
denotes |
- |
| T8639 |
11792-11797 |
NN |
denotes |
stage |
| T8640 |
11808-11815 |
NNS |
denotes |
embryos |
| T8641 |
11798-11802 |
JJ |
denotes |
wild |
| T8642 |
11803-11807 |
NN |
denotes |
type |
| T8643 |
11802-11803 |
HYPH |
denotes |
- |
| T8644 |
11816-11817 |
-LRB- |
denotes |
( |
| T8645 |
11817-11824 |
VB |
denotes |
compare |
| T8646 |
11825-11831 |
NN |
denotes |
Figure |
| T8647 |
11832-11834 |
NN |
denotes |
1D |
| T8648 |
11835-11838 |
CC |
denotes |
and |
| T8649 |
11839-11841 |
NN |
denotes |
1F |
| T8650 |
11841-11842 |
-RRB- |
denotes |
) |
| T8651 |
11842-11843 |
. |
denotes |
. |
| T8652 |
11843-12047 |
sentence |
denotes |
These data evidence a key role for p150CAF-1 during pre-implantation development, and reveal that this protein is required for the proper 3-D organization of heterochromatin within embryonic cell nuclei. |
| T8653 |
11844-11849 |
DT |
denotes |
These |
| T8654 |
11850-11854 |
NNS |
denotes |
data |
| T8655 |
11855-11863 |
VBP |
denotes |
evidence |
| T8656 |
11864-11865 |
DT |
denotes |
a |
| T8657 |
11870-11874 |
NN |
denotes |
role |
| T8658 |
11866-11869 |
JJ |
denotes |
key |
| T8659 |
11875-11878 |
IN |
denotes |
for |
| T8660 |
11879-11886 |
NN |
denotes |
p150CAF |
| T8661 |
11886-11887 |
HYPH |
denotes |
- |
| T8662 |
11887-11888 |
CD |
denotes |
1 |
| T8663 |
11889-11895 |
IN |
denotes |
during |
| T8664 |
11896-11912 |
JJ |
denotes |
pre-implantation |
| T8665 |
11913-11924 |
NN |
denotes |
development |
| T8666 |
11924-11926 |
, |
denotes |
, |
| T8667 |
11926-11929 |
CC |
denotes |
and |
| T8668 |
11930-11936 |
VBP |
denotes |
reveal |
| T8669 |
11937-11941 |
IN |
denotes |
that |
| T8670 |
11958-11966 |
VBN |
denotes |
required |
| T8671 |
11942-11946 |
DT |
denotes |
this |
| T8672 |
11947-11954 |
NN |
denotes |
protein |
| T8673 |
11955-11957 |
VBZ |
denotes |
is |
| T8674 |
11967-11970 |
IN |
denotes |
for |
| T8675 |
11971-11974 |
DT |
denotes |
the |
| T8676 |
11986-11998 |
NN |
denotes |
organization |
| T8677 |
11975-11981 |
JJ |
denotes |
proper |
| T8678 |
11982-11983 |
CD |
denotes |
3 |
| T8679 |
11984-11985 |
NN |
denotes |
D |
| T8680 |
11983-11984 |
HYPH |
denotes |
- |
| T8681 |
11999-12001 |
IN |
denotes |
of |
| T8682 |
12002-12017 |
NN |
denotes |
heterochromatin |
| T8683 |
12018-12024 |
IN |
denotes |
within |
| T8684 |
12025-12034 |
JJ |
denotes |
embryonic |
| T8685 |
12040-12046 |
NNS |
denotes |
nuclei |
| T8686 |
12035-12039 |
NN |
denotes |
cell |
| T8687 |
12046-12047 |
. |
denotes |
. |
| T8688 |
12047-12196 |
sentence |
denotes |
Next, we wondered whether a similar requirement for CAF-1 could also be observed in ES cells, which are derived from the blastocyst inner cell mass. |
| T8689 |
12048-12052 |
RB |
denotes |
Next |
| T8690 |
12057-12065 |
VBD |
denotes |
wondered |
| T8691 |
12052-12054 |
, |
denotes |
, |
| T8692 |
12054-12056 |
PRP |
denotes |
we |
| T8693 |
12066-12073 |
IN |
denotes |
whether |
| T8694 |
12120-12128 |
VBN |
denotes |
observed |
| T8695 |
12074-12075 |
DT |
denotes |
a |
| T8696 |
12084-12095 |
NN |
denotes |
requirement |
| T8697 |
12076-12083 |
JJ |
denotes |
similar |
| T8698 |
12096-12099 |
IN |
denotes |
for |
| T8699 |
12100-12103 |
NN |
denotes |
CAF |
| T8700 |
12103-12104 |
HYPH |
denotes |
- |
| T8701 |
12104-12105 |
CD |
denotes |
1 |
| T8702 |
12106-12111 |
MD |
denotes |
could |
| T8703 |
12112-12116 |
RB |
denotes |
also |
| T8704 |
12117-12119 |
VB |
denotes |
be |
| T8705 |
12129-12131 |
IN |
denotes |
in |
| T8706 |
12132-12134 |
NN |
denotes |
ES |
| T8707 |
12135-12140 |
NNS |
denotes |
cells |
| T8708 |
12140-12142 |
, |
denotes |
, |
| T8709 |
12142-12147 |
WDT |
denotes |
which |
| T8710 |
12152-12159 |
VBN |
denotes |
derived |
| T8711 |
12148-12151 |
VBP |
denotes |
are |
| T8712 |
12160-12164 |
IN |
denotes |
from |
| T8713 |
12165-12168 |
DT |
denotes |
the |
| T8714 |
12191-12195 |
NN |
denotes |
mass |
| T8715 |
12169-12179 |
NN |
denotes |
blastocyst |
| T8716 |
12180-12185 |
JJ |
denotes |
inner |
| T8717 |
12186-12190 |
NN |
denotes |
cell |
| T8718 |
12195-12196 |
. |
denotes |
. |
| T8719 |
12196-12372 |
sentence |
denotes |
Given the early developmental arrest observed in Chaf1a −/− embryos, such cells could not be derived directly from null embryos, and we thus used an RNAi strategy (Figure 2A). |
| T8720 |
12197-12202 |
VBN |
denotes |
Given |
| T8721 |
12290-12297 |
VBN |
denotes |
derived |
| T8722 |
12203-12206 |
DT |
denotes |
the |
| T8723 |
12227-12233 |
NN |
denotes |
arrest |
| T8724 |
12207-12212 |
JJ |
denotes |
early |
| T8725 |
12213-12226 |
JJ |
denotes |
developmental |
| T8726 |
12234-12242 |
VBN |
denotes |
observed |
| T8727 |
12243-12245 |
IN |
denotes |
in |
| T8728 |
12246-12252 |
NN |
denotes |
Chaf1a |
| T8729 |
12257-12264 |
NNS |
denotes |
embryos |
| T8730 |
12253-12254 |
SYM |
denotes |
− |
| T8731 |
12254-12255 |
HYPH |
denotes |
/ |
| T8732 |
12255-12256 |
SYM |
denotes |
− |
| T8733 |
12264-12266 |
, |
denotes |
, |
| T8734 |
12266-12270 |
JJ |
denotes |
such |
| T8735 |
12271-12276 |
NNS |
denotes |
cells |
| T8736 |
12277-12282 |
MD |
denotes |
could |
| T8737 |
12283-12286 |
RB |
denotes |
not |
| T8738 |
12287-12289 |
VB |
denotes |
be |
| T8739 |
12298-12306 |
RB |
denotes |
directly |
| T8740 |
12307-12311 |
IN |
denotes |
from |
| T8741 |
12312-12316 |
JJ |
denotes |
null |
| T8742 |
12317-12324 |
NNS |
denotes |
embryos |
| T8743 |
12324-12326 |
, |
denotes |
, |
| T8744 |
12326-12329 |
CC |
denotes |
and |
| T8745 |
12330-12332 |
PRP |
denotes |
we |
| T8746 |
12338-12342 |
VBD |
denotes |
used |
| T8747 |
12333-12337 |
RB |
denotes |
thus |
| T8748 |
12343-12345 |
DT |
denotes |
an |
| T8749 |
12351-12359 |
NN |
denotes |
strategy |
| T8750 |
12346-12350 |
NN |
denotes |
RNAi |
| T8751 |
12360-12361 |
-LRB- |
denotes |
( |
| T8752 |
12368-12370 |
NN |
denotes |
2A |
| T8753 |
12361-12367 |
NN |
denotes |
Figure |
| T8754 |
12370-12371 |
-RRB- |
denotes |
) |
| T8755 |
12371-12372 |
. |
denotes |
. |
| T8756 |
12372-12452 |
sentence |
denotes |
p150CAF-1 knockdown in ES cells was quantified by Western blot analysis and IF. |
| T8757 |
12373-12380 |
NN |
denotes |
p150CAF |
| T8758 |
12383-12392 |
NN |
denotes |
knockdown |
| T8759 |
12380-12381 |
HYPH |
denotes |
- |
| T8760 |
12381-12382 |
CD |
denotes |
1 |
| T8761 |
12409-12419 |
VBN |
denotes |
quantified |
| T8762 |
12393-12395 |
IN |
denotes |
in |
| T8763 |
12396-12398 |
NN |
denotes |
ES |
| T8764 |
12399-12404 |
NNS |
denotes |
cells |
| T8765 |
12405-12408 |
VBD |
denotes |
was |
| T8766 |
12420-12422 |
IN |
denotes |
by |
| T8767 |
12423-12430 |
NNP |
denotes |
Western |
| T8768 |
12431-12435 |
NN |
denotes |
blot |
| T8769 |
12436-12444 |
NN |
denotes |
analysis |
| T8770 |
12445-12448 |
CC |
denotes |
and |
| T8771 |
12449-12451 |
NN |
denotes |
IF |
| T8772 |
12451-12452 |
. |
denotes |
. |
| T8773 |
12452-12465 |
sentence |
denotes |
(Figure S1). |
| T8774 |
12453-12454 |
-LRB- |
denotes |
( |
| T8775 |
12461-12463 |
NN |
denotes |
S1 |
| T8776 |
12454-12460 |
NN |
denotes |
Figure |
| T8777 |
12463-12464 |
-RRB- |
denotes |
) |
| T8778 |
12464-12465 |
. |
denotes |
. |
| T8779 |
12465-12569 |
sentence |
denotes |
p150CAF-1 RNAi-depleted ES cells displayed a phenotype very similar to the cells of Chaf1a −/− E4 mice. |
| T8780 |
12466-12473 |
NN |
denotes |
p150CAF |
| T8781 |
12493-12498 |
NNS |
denotes |
cells |
| T8782 |
12473-12474 |
HYPH |
denotes |
- |
| T8783 |
12474-12475 |
CD |
denotes |
1 |
| T8784 |
12476-12480 |
NN |
denotes |
RNAi |
| T8785 |
12481-12489 |
VBN |
denotes |
depleted |
| T8786 |
12480-12481 |
HYPH |
denotes |
- |
| T8787 |
12490-12492 |
NN |
denotes |
ES |
| T8788 |
12499-12508 |
VBD |
denotes |
displayed |
| T8789 |
12509-12510 |
DT |
denotes |
a |
| T8790 |
12511-12520 |
NN |
denotes |
phenotype |
| T8791 |
12521-12525 |
RB |
denotes |
very |
| T8792 |
12526-12533 |
JJ |
denotes |
similar |
| T8793 |
12534-12536 |
IN |
denotes |
to |
| T8794 |
12537-12540 |
DT |
denotes |
the |
| T8795 |
12541-12546 |
NNS |
denotes |
cells |
| T8796 |
12547-12549 |
IN |
denotes |
of |
| T8797 |
12550-12556 |
NN |
denotes |
Chaf1a |
| T8798 |
12564-12568 |
NNS |
denotes |
mice |
| T8799 |
12557-12558 |
SYM |
denotes |
− |
| T8800 |
12558-12559 |
HYPH |
denotes |
/ |
| T8801 |
12559-12560 |
SYM |
denotes |
− |
| T8802 |
12561-12563 |
NN |
denotes |
E4 |
| T8803 |
12568-12569 |
. |
denotes |
. |
| T8804 |
12569-12712 |
sentence |
denotes |
DAPI-dense foci were lost, and we observed diffuse HP1α and DAPI staining around the nucleoli and at the periphery of the nucleus (Figure 2B). |
| T8805 |
12570-12574 |
NN |
denotes |
DAPI |
| T8806 |
12575-12580 |
JJ |
denotes |
dense |
| T8807 |
12574-12575 |
HYPH |
denotes |
- |
| T8808 |
12581-12585 |
NNS |
denotes |
foci |
| T8809 |
12591-12595 |
VBN |
denotes |
lost |
| T8810 |
12586-12590 |
VBD |
denotes |
were |
| T8811 |
12595-12597 |
, |
denotes |
, |
| T8812 |
12597-12600 |
CC |
denotes |
and |
| T8813 |
12601-12603 |
PRP |
denotes |
we |
| T8814 |
12604-12612 |
VBD |
denotes |
observed |
| T8815 |
12613-12620 |
JJ |
denotes |
diffuse |
| T8816 |
12635-12643 |
NN |
denotes |
staining |
| T8817 |
12621-12625 |
NN |
denotes |
HP1α |
| T8818 |
12626-12629 |
CC |
denotes |
and |
| T8819 |
12630-12634 |
NN |
denotes |
DAPI |
| T8820 |
12644-12650 |
IN |
denotes |
around |
| T8821 |
12651-12654 |
DT |
denotes |
the |
| T8822 |
12655-12663 |
NNS |
denotes |
nucleoli |
| T8823 |
12664-12667 |
CC |
denotes |
and |
| T8824 |
12668-12670 |
IN |
denotes |
at |
| T8825 |
12671-12674 |
DT |
denotes |
the |
| T8826 |
12675-12684 |
NN |
denotes |
periphery |
| T8827 |
12685-12687 |
IN |
denotes |
of |
| T8828 |
12688-12691 |
DT |
denotes |
the |
| T8829 |
12692-12699 |
NN |
denotes |
nucleus |
| T8830 |
12700-12701 |
-LRB- |
denotes |
( |
| T8831 |
12708-12710 |
NN |
denotes |
2B |
| T8832 |
12701-12707 |
NN |
denotes |
Figure |
| T8833 |
12710-12711 |
-RRB- |
denotes |
) |
| T8834 |
12711-12712 |
. |
denotes |
. |
| T8835 |
12712-12870 |
sentence |
denotes |
This result indicates that p150CAF-1 is essential for nuclear organization of heterochromatin in ES cells in a similar way to early pre-implantation embryos. |
| T8836 |
12713-12717 |
DT |
denotes |
This |
| T8837 |
12718-12724 |
NN |
denotes |
result |
| T8838 |
12725-12734 |
VBZ |
denotes |
indicates |
| T8839 |
12735-12739 |
IN |
denotes |
that |
| T8840 |
12750-12752 |
VBZ |
denotes |
is |
| T8841 |
12740-12747 |
NN |
denotes |
p150CAF |
| T8842 |
12747-12748 |
HYPH |
denotes |
- |
| T8843 |
12748-12749 |
CD |
denotes |
1 |
| T8844 |
12753-12762 |
JJ |
denotes |
essential |
| T8845 |
12763-12766 |
IN |
denotes |
for |
| T8846 |
12767-12774 |
JJ |
denotes |
nuclear |
| T8847 |
12775-12787 |
NN |
denotes |
organization |
| T8848 |
12788-12790 |
IN |
denotes |
of |
| T8849 |
12791-12806 |
NN |
denotes |
heterochromatin |
| T8850 |
12807-12809 |
IN |
denotes |
in |
| T8851 |
12810-12812 |
NN |
denotes |
ES |
| T8852 |
12813-12818 |
NNS |
denotes |
cells |
| T8853 |
12819-12821 |
IN |
denotes |
in |
| T8854 |
12822-12823 |
DT |
denotes |
a |
| T8855 |
12832-12835 |
NN |
denotes |
way |
| T8856 |
12824-12831 |
JJ |
denotes |
similar |
| T8857 |
12836-12838 |
IN |
denotes |
to |
| T8858 |
12839-12844 |
JJ |
denotes |
early |
| T8859 |
12862-12869 |
NNS |
denotes |
embryos |
| T8860 |
12845-12861 |
JJ |
denotes |
pre-implantation |
| T8861 |
12869-12870 |
. |
denotes |
. |
| T8862 |
12870-13043 |
sentence |
denotes |
Surprisingly, we did not observe this severe alteration in heterochromatin organization in primary mouse embryonic fibroblasts (MEFs) following p150CAF-1 depletion by RNAi. |
| T8863 |
12871-12883 |
RB |
denotes |
Surprisingly |
| T8864 |
12896-12903 |
VB |
denotes |
observe |
| T8865 |
12883-12885 |
, |
denotes |
, |
| T8866 |
12885-12887 |
PRP |
denotes |
we |
| T8867 |
12888-12891 |
VBD |
denotes |
did |
| T8868 |
12892-12895 |
RB |
denotes |
not |
| T8869 |
12904-12908 |
DT |
denotes |
this |
| T8870 |
12916-12926 |
NN |
denotes |
alteration |
| T8871 |
12909-12915 |
JJ |
denotes |
severe |
| T8872 |
12927-12929 |
IN |
denotes |
in |
| T8873 |
12930-12945 |
NN |
denotes |
heterochromatin |
| T8874 |
12946-12958 |
NN |
denotes |
organization |
| T8875 |
12959-12961 |
IN |
denotes |
in |
| T8876 |
12962-12969 |
JJ |
denotes |
primary |
| T8877 |
12986-12997 |
NNS |
denotes |
fibroblasts |
| T8878 |
12970-12975 |
NN |
denotes |
mouse |
| T8879 |
12976-12985 |
JJ |
denotes |
embryonic |
| T8880 |
12998-12999 |
-LRB- |
denotes |
( |
| T8881 |
12999-13003 |
NNS |
denotes |
MEFs |
| T8882 |
13003-13004 |
-RRB- |
denotes |
) |
| T8883 |
13005-13014 |
VBG |
denotes |
following |
| T8884 |
13015-13022 |
NN |
denotes |
p150CAF |
| T8885 |
13025-13034 |
NN |
denotes |
depletion |
| T8886 |
13022-13023 |
HYPH |
denotes |
- |
| T8887 |
13023-13024 |
CD |
denotes |
1 |
| T8888 |
13035-13037 |
IN |
denotes |
by |
| T8889 |
13038-13042 |
NN |
denotes |
RNAi |
| T8890 |
13042-13043 |
. |
denotes |
. |
| T8891 |
13043-13226 |
sentence |
denotes |
p150CAF-1 depletion in MEFs resulted in a strong inhibition of cell proliferation (unpublished data), but did not alter the clustering of heterochromatin domains (Figures 2C and S2). |
| T8892 |
13044-13051 |
NN |
denotes |
p150CAF |
| T8893 |
13054-13063 |
NN |
denotes |
depletion |
| T8894 |
13051-13052 |
HYPH |
denotes |
- |
| T8895 |
13052-13053 |
CD |
denotes |
1 |
| T8896 |
13072-13080 |
VBD |
denotes |
resulted |
| T8897 |
13064-13066 |
IN |
denotes |
in |
| T8898 |
13067-13071 |
NNS |
denotes |
MEFs |
| T8899 |
13081-13083 |
IN |
denotes |
in |
| T8900 |
13084-13085 |
DT |
denotes |
a |
| T8901 |
13093-13103 |
NN |
denotes |
inhibition |
| T8902 |
13086-13092 |
JJ |
denotes |
strong |
| T8903 |
13104-13106 |
IN |
denotes |
of |
| T8904 |
13107-13111 |
NN |
denotes |
cell |
| T8905 |
13112-13125 |
NN |
denotes |
proliferation |
| T8906 |
13126-13127 |
-LRB- |
denotes |
( |
| T8907 |
13139-13143 |
NNS |
denotes |
data |
| T8908 |
13127-13138 |
JJ |
denotes |
unpublished |
| T8909 |
13143-13144 |
-RRB- |
denotes |
) |
| T8910 |
13144-13146 |
, |
denotes |
, |
| T8911 |
13146-13149 |
CC |
denotes |
but |
| T8912 |
13150-13153 |
VBD |
denotes |
did |
| T8913 |
13158-13163 |
VB |
denotes |
alter |
| T8914 |
13154-13157 |
RB |
denotes |
not |
| T8915 |
13164-13167 |
DT |
denotes |
the |
| T8916 |
13168-13178 |
NN |
denotes |
clustering |
| T8917 |
13179-13181 |
IN |
denotes |
of |
| T8918 |
13182-13197 |
NN |
denotes |
heterochromatin |
| T8919 |
13198-13205 |
NNS |
denotes |
domains |
| T8920 |
13206-13207 |
-LRB- |
denotes |
( |
| T8921 |
13215-13217 |
NN |
denotes |
2C |
| T8922 |
13207-13214 |
NNS |
denotes |
Figures |
| T8923 |
13218-13221 |
CC |
denotes |
and |
| T8924 |
13222-13224 |
NN |
denotes |
S2 |
| T8925 |
13224-13225 |
-RRB- |
denotes |
) |
| T8926 |
13225-13226 |
. |
denotes |
. |
| T8927 |
13226-13320 |
sentence |
denotes |
Similarly, p150CAF-1 depletion in 3T3 cells did not affect heterochromatin organization [16]. |
| T8928 |
13227-13236 |
RB |
denotes |
Similarly |
| T8929 |
13279-13285 |
VB |
denotes |
affect |
| T8930 |
13236-13238 |
, |
denotes |
, |
| T8931 |
13238-13245 |
NN |
denotes |
p150CAF |
| T8932 |
13248-13257 |
NN |
denotes |
depletion |
| T8933 |
13245-13246 |
HYPH |
denotes |
- |
| T8934 |
13246-13247 |
CD |
denotes |
1 |
| T8935 |
13258-13260 |
IN |
denotes |
in |
| T8936 |
13261-13264 |
NN |
denotes |
3T3 |
| T8937 |
13265-13270 |
NNS |
denotes |
cells |
| T8938 |
13271-13274 |
VBD |
denotes |
did |
| T8939 |
13275-13278 |
RB |
denotes |
not |
| T8940 |
13286-13301 |
NN |
denotes |
heterochromatin |
| T8941 |
13302-13314 |
NN |
denotes |
organization |
| T8942 |
13315-13316 |
-LRB- |
denotes |
[ |
| T8943 |
13316-13318 |
CD |
denotes |
16 |
| T8944 |
13318-13319 |
-RRB- |
denotes |
] |
| T8945 |
13319-13320 |
. |
denotes |
. |
| T8946 |
13320-13410 |
sentence |
denotes |
These observations reveal a specific function for CAF-1 in the early embryo and ES cells. |
| T8947 |
13321-13326 |
DT |
denotes |
These |
| T8948 |
13327-13339 |
NNS |
denotes |
observations |
| T8949 |
13340-13346 |
VBP |
denotes |
reveal |
| T8950 |
13347-13348 |
DT |
denotes |
a |
| T8951 |
13358-13366 |
NN |
denotes |
function |
| T8952 |
13349-13357 |
JJ |
denotes |
specific |
| T8953 |
13367-13370 |
IN |
denotes |
for |
| T8954 |
13371-13374 |
NN |
denotes |
CAF |
| T8955 |
13374-13375 |
HYPH |
denotes |
- |
| T8956 |
13375-13376 |
CD |
denotes |
1 |
| T8957 |
13377-13379 |
IN |
denotes |
in |
| T8958 |
13380-13383 |
DT |
denotes |
the |
| T8959 |
13390-13396 |
NN |
denotes |
embryo |
| T8960 |
13384-13389 |
JJ |
denotes |
early |
| T8961 |
13397-13400 |
CC |
denotes |
and |
| T8962 |
13401-13403 |
NN |
denotes |
ES |
| T8963 |
13404-13409 |
NNS |
denotes |
cells |
| T8964 |
13409-13410 |
. |
denotes |
. |
| T8965 |
13410-14893 |
sentence |
denotes |
Figure 2 Depletion of p150CAF-1 in ES Cells Results in a Severe Alteration of Heterochromatin Organization
(A) Strategy used to deplete p150CAF-1 by RNAi in ES cells. The siRNA expression vector includes a puromycin selection cassette (Puro), the mouse H1 promoter, and the siRNA encoding sequence. ES cells were kept under puromycin selection during 48 h following transfection.
(B) Abnormal heterochromatin organization in p150CAF-1-depleted ES cells. Immunodetection of p150CAF-1 (green) and HP1α (red) in ES cells transfected with control (cont) and p150CAF-1 siRNA. siRNA expression results in efficient p150CAF-1 depletion. The right-hand image shows the merge between HP1α fluorescence and DAPI-stained DNA in blue. Scale bar = 10 μm.
(C) Heterochromatin organization is not altered in p150CAF-1-depleted MEFs. Immunodetection of p150CAF-1 (green) and HP1α (red) in MEFs transfected with control (cont) or p150CAF-1 siRNA. The right-hand image shows the merge between HP1α fluorescence and DAPI-stained DNA in blue.
(D) PML bodies are not altered in p150CAF-1-depleted ES cells. Immunodetection of PML (red) in ES cells transfected with control (cont) or p150CAF-1 siRNA. The right-hand image shows the merge between PML fluorescence and DAPI-stained DNA in blue. We also wondered whether loss of p150CAF-1 in ES cells specifically affects the heterochromatin nuclear subcompartment, or whether it might result in a more global loss of nuclear organization and architecture. |
| T8966 |
14683-14685 |
PRP |
denotes |
We |
| T8967 |
14691-14699 |
VBD |
denotes |
wondered |
| T8968 |
14686-14690 |
RB |
denotes |
also |
| T8969 |
14700-14707 |
IN |
denotes |
whether |
| T8970 |
14751-14758 |
VBZ |
denotes |
affects |
| T8971 |
14708-14712 |
NN |
denotes |
loss |
| T8972 |
14713-14715 |
IN |
denotes |
of |
| T8973 |
14716-14723 |
NN |
denotes |
p150CAF |
| T8974 |
14723-14724 |
HYPH |
denotes |
- |
| T8975 |
14724-14725 |
CD |
denotes |
1 |
| T8976 |
14726-14728 |
IN |
denotes |
in |
| T8977 |
14729-14731 |
NN |
denotes |
ES |
| T8978 |
14732-14737 |
NNS |
denotes |
cells |
| T8979 |
14738-14750 |
RB |
denotes |
specifically |
| T8980 |
14759-14762 |
DT |
denotes |
the |
| T8981 |
14787-14801 |
NN |
denotes |
subcompartment |
| T8982 |
14763-14778 |
NN |
denotes |
heterochromatin |
| T8983 |
14779-14786 |
JJ |
denotes |
nuclear |
| T8984 |
14801-14803 |
, |
denotes |
, |
| T8985 |
14803-14805 |
CC |
denotes |
or |
| T8986 |
14806-14813 |
IN |
denotes |
whether |
| T8987 |
14823-14829 |
VB |
denotes |
result |
| T8988 |
14814-14816 |
PRP |
denotes |
it |
| T8989 |
14817-14822 |
MD |
denotes |
might |
| T8990 |
14830-14832 |
IN |
denotes |
in |
| T8991 |
14833-14834 |
DT |
denotes |
a |
| T8992 |
14847-14851 |
NN |
denotes |
loss |
| T8993 |
14835-14839 |
RBR |
denotes |
more |
| T8994 |
14840-14846 |
JJ |
denotes |
global |
| T8995 |
14852-14854 |
IN |
denotes |
of |
| T8996 |
14855-14862 |
JJ |
denotes |
nuclear |
| T8997 |
14863-14875 |
NN |
denotes |
organization |
| T8998 |
14876-14879 |
CC |
denotes |
and |
| T8999 |
14880-14892 |
NN |
denotes |
architecture |
| T9000 |
14892-14893 |
. |
denotes |
. |
| T9001 |
14893-15072 |
sentence |
denotes |
We used a specific antibody against the promyelocytic leukemia (PML) protein to study the fate of the PML nuclear bodies, which are well-characterized subnuclear structures [22]. |
| T9002 |
14894-14896 |
PRP |
denotes |
We |
| T9003 |
14897-14901 |
VBD |
denotes |
used |
| T9004 |
14902-14903 |
DT |
denotes |
a |
| T9005 |
14913-14921 |
NN |
denotes |
antibody |
| T9006 |
14904-14912 |
JJ |
denotes |
specific |
| T9007 |
14922-14929 |
IN |
denotes |
against |
| T9008 |
14930-14933 |
DT |
denotes |
the |
| T9009 |
14963-14970 |
NN |
denotes |
protein |
| T9010 |
14934-14947 |
JJ |
denotes |
promyelocytic |
| T9011 |
14948-14956 |
NN |
denotes |
leukemia |
| T9012 |
14957-14958 |
-LRB- |
denotes |
( |
| T9013 |
14958-14961 |
NN |
denotes |
PML |
| T9014 |
14961-14962 |
-RRB- |
denotes |
) |
| T9015 |
14971-14973 |
TO |
denotes |
to |
| T9016 |
14974-14979 |
VB |
denotes |
study |
| T9017 |
14980-14983 |
DT |
denotes |
the |
| T9018 |
14984-14988 |
NN |
denotes |
fate |
| T9019 |
14989-14991 |
IN |
denotes |
of |
| T9020 |
14992-14995 |
DT |
denotes |
the |
| T9021 |
15008-15014 |
NNS |
denotes |
bodies |
| T9022 |
14996-14999 |
NN |
denotes |
PML |
| T9023 |
15000-15007 |
JJ |
denotes |
nuclear |
| T9024 |
15014-15016 |
, |
denotes |
, |
| T9025 |
15016-15021 |
WDT |
denotes |
which |
| T9026 |
15022-15025 |
VBP |
denotes |
are |
| T9027 |
15026-15030 |
RB |
denotes |
well |
| T9028 |
15031-15044 |
VBN |
denotes |
characterized |
| T9029 |
15030-15031 |
HYPH |
denotes |
- |
| T9030 |
15056-15066 |
NNS |
denotes |
structures |
| T9031 |
15045-15055 |
JJ |
denotes |
subnuclear |
| T9032 |
15067-15068 |
-LRB- |
denotes |
[ |
| T9033 |
15068-15070 |
CD |
denotes |
22 |
| T9034 |
15070-15071 |
-RRB- |
denotes |
] |
| T9035 |
15071-15072 |
. |
denotes |
. |
| T9036 |
15072-15233 |
sentence |
denotes |
We could not detect any significant difference in the distribution and aspect of PML nuclear bodies between control and p150CAF-1-depleted ES cells (Figure 2D). |
| T9037 |
15073-15075 |
PRP |
denotes |
We |
| T9038 |
15086-15092 |
VB |
denotes |
detect |
| T9039 |
15076-15081 |
MD |
denotes |
could |
| T9040 |
15082-15085 |
RB |
denotes |
not |
| T9041 |
15093-15096 |
DT |
denotes |
any |
| T9042 |
15109-15119 |
NN |
denotes |
difference |
| T9043 |
15097-15108 |
JJ |
denotes |
significant |
| T9044 |
15120-15122 |
IN |
denotes |
in |
| T9045 |
15123-15126 |
DT |
denotes |
the |
| T9046 |
15127-15139 |
NN |
denotes |
distribution |
| T9047 |
15140-15143 |
CC |
denotes |
and |
| T9048 |
15144-15150 |
NN |
denotes |
aspect |
| T9049 |
15151-15153 |
IN |
denotes |
of |
| T9050 |
15154-15157 |
NN |
denotes |
PML |
| T9051 |
15166-15172 |
NNS |
denotes |
bodies |
| T9052 |
15158-15165 |
JJ |
denotes |
nuclear |
| T9053 |
15173-15180 |
IN |
denotes |
between |
| T9054 |
15181-15188 |
NN |
denotes |
control |
| T9055 |
15215-15220 |
NNS |
denotes |
cells |
| T9056 |
15189-15192 |
CC |
denotes |
and |
| T9057 |
15193-15200 |
NN |
denotes |
p150CAF |
| T9058 |
15203-15211 |
VBN |
denotes |
depleted |
| T9059 |
15200-15201 |
HYPH |
denotes |
- |
| T9060 |
15201-15202 |
CD |
denotes |
1 |
| T9061 |
15202-15203 |
HYPH |
denotes |
- |
| T9062 |
15212-15214 |
NN |
denotes |
ES |
| T9063 |
15221-15222 |
-LRB- |
denotes |
( |
| T9064 |
15229-15231 |
NN |
denotes |
2D |
| T9065 |
15222-15228 |
NN |
denotes |
Figure |
| T9066 |
15231-15232 |
-RRB- |
denotes |
) |
| T9067 |
15232-15233 |
. |
denotes |
. |
| T9068 |
15233-15333 |
sentence |
denotes |
These data show that nuclear architecture is not globally altered following CAF-1 loss-of-function. |
| T9069 |
15234-15239 |
DT |
denotes |
These |
| T9070 |
15240-15244 |
NNS |
denotes |
data |
| T9071 |
15245-15249 |
VBP |
denotes |
show |
| T9072 |
15250-15254 |
IN |
denotes |
that |
| T9073 |
15292-15299 |
VBN |
denotes |
altered |
| T9074 |
15255-15262 |
JJ |
denotes |
nuclear |
| T9075 |
15263-15275 |
NN |
denotes |
architecture |
| T9076 |
15276-15278 |
VBZ |
denotes |
is |
| T9077 |
15279-15282 |
RB |
denotes |
not |
| T9078 |
15283-15291 |
RB |
denotes |
globally |
| T9079 |
15300-15309 |
VBG |
denotes |
following |
| T9080 |
15310-15313 |
NN |
denotes |
CAF |
| T9081 |
15313-15314 |
HYPH |
denotes |
- |
| T9082 |
15314-15315 |
CD |
denotes |
1 |
| T9083 |
15316-15320 |
NN |
denotes |
loss |
| T9084 |
15320-15321 |
HYPH |
denotes |
- |
| T9085 |
15321-15323 |
IN |
denotes |
of |
| T9086 |
15323-15324 |
HYPH |
denotes |
- |
| T9087 |
15324-15332 |
NN |
denotes |
function |
| T9088 |
15332-15333 |
. |
denotes |
. |
| T9089 |
15333-15508 |
sentence |
denotes |
In addition, Western blot analysis revealed that CAF-1 depletion did not result in altered levels of chromatin architectural proteins such as histone H3 and HP1α (Figure S1). |
| T9090 |
15334-15336 |
IN |
denotes |
In |
| T9091 |
15369-15377 |
VBD |
denotes |
revealed |
| T9092 |
15337-15345 |
NN |
denotes |
addition |
| T9093 |
15345-15347 |
, |
denotes |
, |
| T9094 |
15347-15354 |
NNP |
denotes |
Western |
| T9095 |
15355-15359 |
NN |
denotes |
blot |
| T9096 |
15360-15368 |
NN |
denotes |
analysis |
| T9097 |
15378-15382 |
IN |
denotes |
that |
| T9098 |
15407-15413 |
VB |
denotes |
result |
| T9099 |
15383-15386 |
NN |
denotes |
CAF |
| T9100 |
15389-15398 |
NN |
denotes |
depletion |
| T9101 |
15386-15387 |
HYPH |
denotes |
- |
| T9102 |
15387-15388 |
CD |
denotes |
1 |
| T9103 |
15399-15402 |
VBD |
denotes |
did |
| T9104 |
15403-15406 |
RB |
denotes |
not |
| T9105 |
15414-15416 |
IN |
denotes |
in |
| T9106 |
15417-15424 |
VBN |
denotes |
altered |
| T9107 |
15425-15431 |
NNS |
denotes |
levels |
| T9108 |
15432-15434 |
IN |
denotes |
of |
| T9109 |
15435-15444 |
NN |
denotes |
chromatin |
| T9110 |
15459-15467 |
NN |
denotes |
proteins |
| T9111 |
15445-15458 |
JJ |
denotes |
architectural |
| T9112 |
15468-15472 |
JJ |
denotes |
such |
| T9113 |
15473-15475 |
IN |
denotes |
as |
| T9114 |
15476-15483 |
NN |
denotes |
histone |
| T9115 |
15484-15486 |
NN |
denotes |
H3 |
| T9116 |
15487-15490 |
CC |
denotes |
and |
| T9117 |
15491-15495 |
NN |
denotes |
HP1α |
| T9118 |
15496-15497 |
-LRB- |
denotes |
( |
| T9119 |
15504-15506 |
NN |
denotes |
S1 |
| T9120 |
15497-15503 |
NN |
denotes |
Figure |
| T9121 |
15506-15507 |
-RRB- |
denotes |
) |
| T9122 |
15507-15508 |
. |
denotes |
. |
| T9123 |
15508-15653 |
sentence |
denotes |
Thus, CAF-1 is specifically required in early embryos and in ES cells for the proper organization of the heterochromatin subnuclear compartment. |
| T9124 |
15509-15513 |
RB |
denotes |
Thus |
| T9125 |
15537-15545 |
VBN |
denotes |
required |
| T9126 |
15513-15515 |
, |
denotes |
, |
| T9127 |
15515-15518 |
NN |
denotes |
CAF |
| T9128 |
15518-15519 |
HYPH |
denotes |
- |
| T9129 |
15519-15520 |
CD |
denotes |
1 |
| T9130 |
15521-15523 |
VBZ |
denotes |
is |
| T9131 |
15524-15536 |
RB |
denotes |
specifically |
| T9132 |
15546-15548 |
IN |
denotes |
in |
| T9133 |
15549-15554 |
JJ |
denotes |
early |
| T9134 |
15555-15562 |
NNS |
denotes |
embryos |
| T9135 |
15563-15566 |
CC |
denotes |
and |
| T9136 |
15567-15569 |
IN |
denotes |
in |
| T9137 |
15570-15572 |
NN |
denotes |
ES |
| T9138 |
15573-15578 |
NNS |
denotes |
cells |
| T9139 |
15579-15582 |
IN |
denotes |
for |
| T9140 |
15583-15586 |
DT |
denotes |
the |
| T9141 |
15594-15606 |
NN |
denotes |
organization |
| T9142 |
15587-15593 |
JJ |
denotes |
proper |
| T9143 |
15607-15609 |
IN |
denotes |
of |
| T9144 |
15610-15613 |
DT |
denotes |
the |
| T9145 |
15641-15652 |
NN |
denotes |
compartment |
| T9146 |
15614-15629 |
NN |
denotes |
heterochromatin |
| T9147 |
15630-15640 |
JJ |
denotes |
subnuclear |
| T9148 |
15652-15653 |
. |
denotes |
. |
| T9149 |
15653-15779 |
sentence |
denotes |
Previous studies performed in mammalian cell lines showed that CAF-1 activity is required for S phase progression [16,23,24]. |
| T9150 |
15654-15662 |
JJ |
denotes |
Previous |
| T9151 |
15663-15670 |
NNS |
denotes |
studies |
| T9152 |
15705-15711 |
VBD |
denotes |
showed |
| T9153 |
15671-15680 |
VBN |
denotes |
performed |
| T9154 |
15681-15683 |
IN |
denotes |
in |
| T9155 |
15684-15693 |
JJ |
denotes |
mammalian |
| T9156 |
15699-15704 |
NNS |
denotes |
lines |
| T9157 |
15694-15698 |
NN |
denotes |
cell |
| T9158 |
15712-15716 |
IN |
denotes |
that |
| T9159 |
15735-15743 |
VBN |
denotes |
required |
| T9160 |
15717-15720 |
NN |
denotes |
CAF |
| T9161 |
15723-15731 |
NN |
denotes |
activity |
| T9162 |
15720-15721 |
HYPH |
denotes |
- |
| T9163 |
15721-15722 |
CD |
denotes |
1 |
| T9164 |
15732-15734 |
VBZ |
denotes |
is |
| T9165 |
15744-15747 |
IN |
denotes |
for |
| T9166 |
15748-15749 |
NN |
denotes |
S |
| T9167 |
15750-15755 |
NN |
denotes |
phase |
| T9168 |
15756-15767 |
NN |
denotes |
progression |
| T9169 |
15768-15769 |
-LRB- |
denotes |
[ |
| T9170 |
15775-15777 |
CD |
denotes |
24 |
| T9171 |
15769-15771 |
CD |
denotes |
16 |
| T9172 |
15771-15772 |
, |
denotes |
, |
| T9173 |
15772-15774 |
CD |
denotes |
23 |
| T9174 |
15774-15775 |
, |
denotes |
, |
| T9175 |
15777-15778 |
-RRB- |
denotes |
] |
| T9176 |
15778-15779 |
. |
denotes |
. |
| T9177 |
15779-16155 |
sentence |
denotes |
We show here that 3 d after transfection of the RNAi vector, p150CAF-1-depleted cells (identified by a complete absence of CAF-1 IF signal) appear still active for replication, as revealed by incorporation of the thymidine analog bromodeoxyuridine (BrdU) (Figure 3A), the PCNA (proliferating cell nuclear antigen) pattern (Figure 3B), and flow cytometry analysis (Figure 3C). |
| T9178 |
15780-15782 |
PRP |
denotes |
We |
| T9179 |
15783-15787 |
VBP |
denotes |
show |
| T9180 |
15788-15792 |
RB |
denotes |
here |
| T9181 |
15793-15797 |
IN |
denotes |
that |
| T9182 |
15920-15926 |
VBP |
denotes |
appear |
| T9183 |
15798-15799 |
CD |
denotes |
3 |
| T9184 |
15800-15801 |
NN |
denotes |
d |
| T9185 |
15802-15807 |
IN |
denotes |
after |
| T9186 |
15808-15820 |
NN |
denotes |
transfection |
| T9187 |
15821-15823 |
IN |
denotes |
of |
| T9188 |
15824-15827 |
DT |
denotes |
the |
| T9189 |
15833-15839 |
NN |
denotes |
vector |
| T9190 |
15828-15832 |
NN |
denotes |
RNAi |
| T9191 |
15839-15841 |
, |
denotes |
, |
| T9192 |
15841-15848 |
NN |
denotes |
p150CAF |
| T9193 |
15851-15859 |
VBN |
denotes |
depleted |
| T9194 |
15848-15849 |
HYPH |
denotes |
- |
| T9195 |
15849-15850 |
CD |
denotes |
1 |
| T9196 |
15850-15851 |
HYPH |
denotes |
- |
| T9197 |
15860-15865 |
NNS |
denotes |
cells |
| T9198 |
15866-15867 |
-LRB- |
denotes |
( |
| T9199 |
15867-15877 |
VBN |
denotes |
identified |
| T9200 |
15878-15880 |
IN |
denotes |
by |
| T9201 |
15881-15882 |
DT |
denotes |
a |
| T9202 |
15892-15899 |
NN |
denotes |
absence |
| T9203 |
15883-15891 |
JJ |
denotes |
complete |
| T9204 |
15900-15902 |
IN |
denotes |
of |
| T9205 |
15903-15906 |
NN |
denotes |
CAF |
| T9206 |
15912-15918 |
NN |
denotes |
signal |
| T9207 |
15906-15907 |
HYPH |
denotes |
- |
| T9208 |
15907-15908 |
CD |
denotes |
1 |
| T9209 |
15909-15911 |
NN |
denotes |
IF |
| T9210 |
15918-15919 |
-RRB- |
denotes |
) |
| T9211 |
15927-15932 |
RB |
denotes |
still |
| T9212 |
15933-15939 |
JJ |
denotes |
active |
| T9213 |
15940-15943 |
IN |
denotes |
for |
| T9214 |
15944-15955 |
NN |
denotes |
replication |
| T9215 |
15955-15957 |
, |
denotes |
, |
| T9216 |
15957-15959 |
IN |
denotes |
as |
| T9217 |
15960-15968 |
VBN |
denotes |
revealed |
| T9218 |
15969-15971 |
IN |
denotes |
by |
| T9219 |
15972-15985 |
NN |
denotes |
incorporation |
| T9220 |
15986-15988 |
IN |
denotes |
of |
| T9221 |
15989-15992 |
DT |
denotes |
the |
| T9222 |
16003-16009 |
NN |
denotes |
analog |
| T9223 |
15993-16002 |
NN |
denotes |
thymidine |
| T9224 |
16010-16027 |
NN |
denotes |
bromodeoxyuridine |
| T9225 |
16028-16029 |
-LRB- |
denotes |
( |
| T9226 |
16029-16033 |
NN |
denotes |
BrdU |
| T9227 |
16033-16034 |
-RRB- |
denotes |
) |
| T9228 |
16035-16036 |
-LRB- |
denotes |
( |
| T9229 |
16043-16045 |
NN |
denotes |
3A |
| T9230 |
16036-16042 |
NN |
denotes |
Figure |
| T9231 |
16045-16046 |
-RRB- |
denotes |
) |
| T9232 |
16046-16048 |
, |
denotes |
, |
| T9233 |
16048-16051 |
DT |
denotes |
the |
| T9234 |
16094-16101 |
NN |
denotes |
pattern |
| T9235 |
16052-16056 |
NN |
denotes |
PCNA |
| T9236 |
16057-16058 |
-LRB- |
denotes |
( |
| T9237 |
16058-16071 |
VBG |
denotes |
proliferating |
| T9238 |
16085-16092 |
NN |
denotes |
antigen |
| T9239 |
16072-16076 |
NN |
denotes |
cell |
| T9240 |
16077-16084 |
JJ |
denotes |
nuclear |
| T9241 |
16092-16093 |
-RRB- |
denotes |
) |
| T9242 |
16102-16103 |
-LRB- |
denotes |
( |
| T9243 |
16110-16112 |
NN |
denotes |
3B |
| T9244 |
16103-16109 |
NN |
denotes |
Figure |
| T9245 |
16112-16113 |
-RRB- |
denotes |
) |
| T9246 |
16113-16115 |
, |
denotes |
, |
| T9247 |
16115-16118 |
CC |
denotes |
and |
| T9248 |
16119-16123 |
NN |
denotes |
flow |
| T9249 |
16134-16142 |
NN |
denotes |
analysis |
| T9250 |
16124-16133 |
NN |
denotes |
cytometry |
| T9251 |
16143-16144 |
-LRB- |
denotes |
( |
| T9252 |
16151-16153 |
NN |
denotes |
3C |
| T9253 |
16144-16150 |
NN |
denotes |
Figure |
| T9254 |
16153-16154 |
-RRB- |
denotes |
) |
| T9255 |
16154-16155 |
. |
denotes |
. |
| T9256 |
16155-16264 |
sentence |
denotes |
Hence, in these cells, DNA replication persists despite the drastic changes in heterochromatin organization. |
| T9257 |
16156-16161 |
RB |
denotes |
Hence |
| T9258 |
16195-16203 |
VBZ |
denotes |
persists |
| T9259 |
16161-16163 |
, |
denotes |
, |
| T9260 |
16163-16165 |
IN |
denotes |
in |
| T9261 |
16166-16171 |
DT |
denotes |
these |
| T9262 |
16172-16177 |
NNS |
denotes |
cells |
| T9263 |
16177-16179 |
, |
denotes |
, |
| T9264 |
16179-16182 |
NN |
denotes |
DNA |
| T9265 |
16183-16194 |
NN |
denotes |
replication |
| T9266 |
16204-16211 |
IN |
denotes |
despite |
| T9267 |
16212-16215 |
DT |
denotes |
the |
| T9268 |
16224-16231 |
NNS |
denotes |
changes |
| T9269 |
16216-16223 |
JJ |
denotes |
drastic |
| T9270 |
16232-16234 |
IN |
denotes |
in |
| T9271 |
16235-16250 |
NN |
denotes |
heterochromatin |
| T9272 |
16251-16263 |
NN |
denotes |
organization |
| T9273 |
16263-16264 |
. |
denotes |
. |
| T9274 |
16264-16411 |
sentence |
denotes |
However, 24 h later, ES cells cease to proliferate and die, revealing that p150CAF-1 is required for an essential cellular process, as in embryos. |
| T9275 |
16265-16272 |
RB |
denotes |
However |
| T9276 |
16295-16300 |
VBP |
denotes |
cease |
| T9277 |
16272-16274 |
, |
denotes |
, |
| T9278 |
16274-16276 |
CD |
denotes |
24 |
| T9279 |
16277-16278 |
NN |
denotes |
h |
| T9280 |
16279-16284 |
RB |
denotes |
later |
| T9281 |
16284-16286 |
, |
denotes |
, |
| T9282 |
16286-16288 |
NN |
denotes |
ES |
| T9283 |
16289-16294 |
NNS |
denotes |
cells |
| T9284 |
16301-16303 |
TO |
denotes |
to |
| T9285 |
16304-16315 |
VB |
denotes |
proliferate |
| T9286 |
16316-16319 |
CC |
denotes |
and |
| T9287 |
16320-16323 |
VB |
denotes |
die |
| T9288 |
16323-16325 |
, |
denotes |
, |
| T9289 |
16325-16334 |
VBG |
denotes |
revealing |
| T9290 |
16335-16339 |
IN |
denotes |
that |
| T9291 |
16353-16361 |
VBN |
denotes |
required |
| T9292 |
16340-16347 |
NN |
denotes |
p150CAF |
| T9293 |
16347-16348 |
HYPH |
denotes |
- |
| T9294 |
16348-16349 |
CD |
denotes |
1 |
| T9295 |
16350-16352 |
VBZ |
denotes |
is |
| T9296 |
16362-16365 |
IN |
denotes |
for |
| T9297 |
16366-16368 |
DT |
denotes |
an |
| T9298 |
16388-16395 |
NN |
denotes |
process |
| T9299 |
16369-16378 |
JJ |
denotes |
essential |
| T9300 |
16379-16387 |
JJ |
denotes |
cellular |
| T9301 |
16395-16397 |
, |
denotes |
, |
| T9302 |
16397-16399 |
IN |
denotes |
as |
| T9303 |
16400-16402 |
IN |
denotes |
in |
| T9304 |
16403-16410 |
NNS |
denotes |
embryos |
| T9305 |
16410-16411 |
. |
denotes |
. |
| T9306 |
16411-16623 |
sentence |
denotes |
Altogether, our data demonstrate that loss of p150CAF-1 function in ES cells and early embryos alters first the organization of heterochromatin in the nucleus and, in a subsequent step, cell cycle and viability. |
| T9307 |
16412-16422 |
RB |
denotes |
Altogether |
| T9308 |
16433-16444 |
VBP |
denotes |
demonstrate |
| T9309 |
16422-16424 |
, |
denotes |
, |
| T9310 |
16424-16427 |
PRP$ |
denotes |
our |
| T9311 |
16428-16432 |
NNS |
denotes |
data |
| T9312 |
16445-16449 |
IN |
denotes |
that |
| T9313 |
16507-16513 |
VBZ |
denotes |
alters |
| T9314 |
16450-16454 |
NN |
denotes |
loss |
| T9315 |
16455-16457 |
IN |
denotes |
of |
| T9316 |
16458-16465 |
NN |
denotes |
p150CAF |
| T9317 |
16468-16476 |
NN |
denotes |
function |
| T9318 |
16465-16466 |
HYPH |
denotes |
- |
| T9319 |
16466-16467 |
CD |
denotes |
1 |
| T9320 |
16477-16479 |
IN |
denotes |
in |
| T9321 |
16480-16482 |
NN |
denotes |
ES |
| T9322 |
16483-16488 |
NNS |
denotes |
cells |
| T9323 |
16489-16492 |
CC |
denotes |
and |
| T9324 |
16493-16498 |
JJ |
denotes |
early |
| T9325 |
16499-16506 |
NNS |
denotes |
embryos |
| T9326 |
16514-16519 |
RB |
denotes |
first |
| T9327 |
16520-16523 |
DT |
denotes |
the |
| T9328 |
16524-16536 |
NN |
denotes |
organization |
| T9329 |
16537-16539 |
IN |
denotes |
of |
| T9330 |
16540-16555 |
NN |
denotes |
heterochromatin |
| T9331 |
16556-16558 |
IN |
denotes |
in |
| T9332 |
16559-16562 |
DT |
denotes |
the |
| T9333 |
16563-16570 |
NN |
denotes |
nucleus |
| T9334 |
16571-16574 |
CC |
denotes |
and |
| T9335 |
16574-16576 |
, |
denotes |
, |
| T9336 |
16576-16578 |
IN |
denotes |
in |
| T9337 |
16603-16608 |
NN |
denotes |
cycle |
| T9338 |
16579-16580 |
DT |
denotes |
a |
| T9339 |
16592-16596 |
NN |
denotes |
step |
| T9340 |
16581-16591 |
JJ |
denotes |
subsequent |
| T9341 |
16596-16598 |
, |
denotes |
, |
| T9342 |
16598-16602 |
NN |
denotes |
cell |
| T9343 |
16609-16612 |
CC |
denotes |
and |
| T9344 |
16613-16622 |
NN |
denotes |
viability |
| T9345 |
16622-16623 |
. |
denotes |
. |
| T9346 |
16623-18193 |
sentence |
denotes |
Figure 3 p150CAF-1 Depletion and Loss of Heterochromatin Organization Are Compatible with Active DNA Replication in ES Cells
(A) ES cells were transfected with p150CAF-1 or control siRNA vectors. After 3 d under puromycin selection, cells were pulse-labeled for 10 min with BrdU and immediately analyzed by IF. No significant difference in BrdU incorporation could be detected between control and p150CAF-1-depleted cells. The right-hand image shows the merge between the p150CAF-1 and BrdU fluorescence. Scale bar = 10 μm.
(B) Immunodetection of PCNA (red) revealed no significant difference in the formation of replication foci between control and p150CAF-1-depleted ES cells. Immunodetection of p150CAF-1 is shown in green and the merging of p150CAF-1 and PCNA appears in yellow.
(C) Flow cytometry analysis showed a similar cell-cycle profile for control and p150CAF-1-depleted ES cells. Results are presented as the percentage of cells in each phase of the cell cycle (G1, S, G2/M), as defined by BrdU incorporation and DNA content. Data presented are the mean of three independent experiments; error bars indicate the standard deviation. All experiments were performed 3 d after transfection of the siRNA vectors. In order to better characterize the defects in heterochromatin organization, we performed two-color DNA fluorescence in situ hybridization (FISH) experiments to reveal the spatial distribution of pericentric and centric chromosomal regions, which in mouse are mainly composed of large blocks of major and minor satellite repeats, respectively [20]. |
| T9347 |
17845-17847 |
IN |
denotes |
In |
| T9348 |
17925-17934 |
VBD |
denotes |
performed |
| T9349 |
17848-17853 |
NN |
denotes |
order |
| T9350 |
17854-17856 |
TO |
denotes |
to |
| T9351 |
17864-17876 |
VB |
denotes |
characterize |
| T9352 |
17857-17863 |
RBR |
denotes |
better |
| T9353 |
17877-17880 |
DT |
denotes |
the |
| T9354 |
17881-17888 |
NNS |
denotes |
defects |
| T9355 |
17889-17891 |
IN |
denotes |
in |
| T9356 |
17892-17907 |
NN |
denotes |
heterochromatin |
| T9357 |
17908-17920 |
NN |
denotes |
organization |
| T9358 |
17920-17922 |
, |
denotes |
, |
| T9359 |
17922-17924 |
PRP |
denotes |
we |
| T9360 |
17935-17938 |
CD |
denotes |
two |
| T9361 |
17939-17944 |
NN |
denotes |
color |
| T9362 |
17938-17939 |
HYPH |
denotes |
- |
| T9363 |
17991-18002 |
NNS |
denotes |
experiments |
| T9364 |
17945-17948 |
NN |
denotes |
DNA |
| T9365 |
17949-17961 |
NN |
denotes |
fluorescence |
| T9366 |
17970-17983 |
NN |
denotes |
hybridization |
| T9367 |
17962-17964 |
FW |
denotes |
in |
| T9368 |
17965-17969 |
FW |
denotes |
situ |
| T9369 |
17984-17985 |
-LRB- |
denotes |
( |
| T9370 |
17985-17989 |
NN |
denotes |
FISH |
| T9371 |
17989-17990 |
-RRB- |
denotes |
) |
| T9372 |
18003-18005 |
TO |
denotes |
to |
| T9373 |
18006-18012 |
VB |
denotes |
reveal |
| T9374 |
18013-18016 |
DT |
denotes |
the |
| T9375 |
18025-18037 |
NN |
denotes |
distribution |
| T9376 |
18017-18024 |
JJ |
denotes |
spatial |
| T9377 |
18038-18040 |
IN |
denotes |
of |
| T9378 |
18041-18052 |
JJ |
denotes |
pericentric |
| T9379 |
18077-18084 |
NNS |
denotes |
regions |
| T9380 |
18053-18056 |
CC |
denotes |
and |
| T9381 |
18057-18064 |
JJ |
denotes |
centric |
| T9382 |
18065-18076 |
JJ |
denotes |
chromosomal |
| T9383 |
18084-18086 |
, |
denotes |
, |
| T9384 |
18086-18091 |
WDT |
denotes |
which |
| T9385 |
18112-18120 |
VBN |
denotes |
composed |
| T9386 |
18092-18094 |
IN |
denotes |
in |
| T9387 |
18095-18100 |
NN |
denotes |
mouse |
| T9388 |
18101-18104 |
VBP |
denotes |
are |
| T9389 |
18105-18111 |
RB |
denotes |
mainly |
| T9390 |
18121-18123 |
IN |
denotes |
of |
| T9391 |
18124-18129 |
JJ |
denotes |
large |
| T9392 |
18130-18136 |
NNS |
denotes |
blocks |
| T9393 |
18137-18139 |
IN |
denotes |
of |
| T9394 |
18140-18145 |
JJ |
denotes |
major |
| T9395 |
18166-18173 |
NNS |
denotes |
repeats |
| T9396 |
18146-18149 |
CC |
denotes |
and |
| T9397 |
18150-18155 |
JJ |
denotes |
minor |
| T9398 |
18156-18165 |
NN |
denotes |
satellite |
| T9399 |
18173-18175 |
, |
denotes |
, |
| T9400 |
18175-18187 |
RB |
denotes |
respectively |
| T9401 |
18188-18189 |
-LRB- |
denotes |
[ |
| T9402 |
18189-18191 |
CD |
denotes |
20 |
| T9403 |
18191-18192 |
-RRB- |
denotes |
] |
| T9404 |
18192-18193 |
. |
denotes |
. |
| T9405 |
18193-18371 |
sentence |
denotes |
Pericentric domains from different chromosomes form clusters, which are revealed by FISH as large spots that coincide with DAPI-dense foci in the interphase nucleus (Figure 4A). |
| T9406 |
18194-18205 |
JJ |
denotes |
Pericentric |
| T9407 |
18206-18213 |
NNS |
denotes |
domains |
| T9408 |
18241-18245 |
VBP |
denotes |
form |
| T9409 |
18214-18218 |
IN |
denotes |
from |
| T9410 |
18219-18228 |
JJ |
denotes |
different |
| T9411 |
18229-18240 |
NNS |
denotes |
chromosomes |
| T9412 |
18246-18254 |
NNS |
denotes |
clusters |
| T9413 |
18254-18256 |
, |
denotes |
, |
| T9414 |
18256-18261 |
WDT |
denotes |
which |
| T9415 |
18266-18274 |
VBN |
denotes |
revealed |
| T9416 |
18262-18265 |
VBP |
denotes |
are |
| T9417 |
18275-18277 |
IN |
denotes |
by |
| T9418 |
18278-18282 |
NN |
denotes |
FISH |
| T9419 |
18283-18285 |
IN |
denotes |
as |
| T9420 |
18286-18291 |
JJ |
denotes |
large |
| T9421 |
18292-18297 |
NNS |
denotes |
spots |
| T9422 |
18298-18302 |
WDT |
denotes |
that |
| T9423 |
18303-18311 |
VBP |
denotes |
coincide |
| T9424 |
18312-18316 |
IN |
denotes |
with |
| T9425 |
18317-18321 |
NN |
denotes |
DAPI |
| T9426 |
18322-18327 |
JJ |
denotes |
dense |
| T9427 |
18321-18322 |
HYPH |
denotes |
- |
| T9428 |
18328-18332 |
NNS |
denotes |
foci |
| T9429 |
18333-18335 |
IN |
denotes |
in |
| T9430 |
18336-18339 |
DT |
denotes |
the |
| T9431 |
18351-18358 |
NN |
denotes |
nucleus |
| T9432 |
18340-18350 |
NN |
denotes |
interphase |
| T9433 |
18359-18360 |
-LRB- |
denotes |
( |
| T9434 |
18367-18369 |
NN |
denotes |
4A |
| T9435 |
18360-18366 |
NN |
denotes |
Figure |
| T9436 |
18369-18370 |
-RRB- |
denotes |
) |
| T9437 |
18370-18371 |
. |
denotes |
. |
| T9438 |
18371-18470 |
sentence |
denotes |
At the periphery of each pericentric domain, centric regions form individual entities (Figure 4A). |
| T9439 |
18372-18374 |
IN |
denotes |
At |
| T9440 |
18433-18437 |
VBP |
denotes |
form |
| T9441 |
18375-18378 |
DT |
denotes |
the |
| T9442 |
18379-18388 |
NN |
denotes |
periphery |
| T9443 |
18389-18391 |
IN |
denotes |
of |
| T9444 |
18392-18396 |
DT |
denotes |
each |
| T9445 |
18409-18415 |
NN |
denotes |
domain |
| T9446 |
18397-18408 |
JJ |
denotes |
pericentric |
| T9447 |
18415-18417 |
, |
denotes |
, |
| T9448 |
18417-18424 |
JJ |
denotes |
centric |
| T9449 |
18425-18432 |
NNS |
denotes |
regions |
| T9450 |
18438-18448 |
JJ |
denotes |
individual |
| T9451 |
18449-18457 |
NNS |
denotes |
entities |
| T9452 |
18458-18459 |
-LRB- |
denotes |
( |
| T9453 |
18466-18468 |
NN |
denotes |
4A |
| T9454 |
18459-18465 |
NN |
denotes |
Figure |
| T9455 |
18468-18469 |
-RRB- |
denotes |
) |
| T9456 |
18469-18470 |
. |
denotes |
. |
| T9457 |
18470-18639 |
sentence |
denotes |
In p150CAF-1 RNAi-depleted cells, we observed a disruption of pericentric heterochromatin clusters that coincides with the disappearance of DAPI-dense foci (Figure 4B). |
| T9458 |
18471-18473 |
IN |
denotes |
In |
| T9459 |
18508-18516 |
VBD |
denotes |
observed |
| T9460 |
18474-18481 |
NN |
denotes |
p150CAF |
| T9461 |
18498-18503 |
NNS |
denotes |
cells |
| T9462 |
18481-18482 |
HYPH |
denotes |
- |
| T9463 |
18482-18483 |
CD |
denotes |
1 |
| T9464 |
18484-18488 |
NN |
denotes |
RNAi |
| T9465 |
18489-18497 |
VBN |
denotes |
depleted |
| T9466 |
18488-18489 |
HYPH |
denotes |
- |
| T9467 |
18503-18505 |
, |
denotes |
, |
| T9468 |
18505-18507 |
PRP |
denotes |
we |
| T9469 |
18517-18518 |
DT |
denotes |
a |
| T9470 |
18519-18529 |
NN |
denotes |
disruption |
| T9471 |
18530-18532 |
IN |
denotes |
of |
| T9472 |
18533-18544 |
JJ |
denotes |
pericentric |
| T9473 |
18561-18569 |
NNS |
denotes |
clusters |
| T9474 |
18545-18560 |
NN |
denotes |
heterochromatin |
| T9475 |
18570-18574 |
WDT |
denotes |
that |
| T9476 |
18575-18584 |
VBZ |
denotes |
coincides |
| T9477 |
18585-18589 |
IN |
denotes |
with |
| T9478 |
18590-18593 |
DT |
denotes |
the |
| T9479 |
18594-18607 |
NN |
denotes |
disappearance |
| T9480 |
18608-18610 |
IN |
denotes |
of |
| T9481 |
18611-18615 |
NN |
denotes |
DAPI |
| T9482 |
18616-18621 |
JJ |
denotes |
dense |
| T9483 |
18615-18616 |
HYPH |
denotes |
- |
| T9484 |
18622-18626 |
NNS |
denotes |
foci |
| T9485 |
18627-18628 |
-LRB- |
denotes |
( |
| T9486 |
18635-18637 |
NN |
denotes |
4B |
| T9487 |
18628-18634 |
NN |
denotes |
Figure |
| T9488 |
18637-18638 |
-RRB- |
denotes |
) |
| T9489 |
18638-18639 |
. |
denotes |
. |
| T9490 |
18639-18827 |
sentence |
denotes |
Individual pericentric domains from single chromosomes are now found either isolated or aggregated in a pattern less dense than the regular clusters observed in control cells (Figure 4B). |
| T9491 |
18640-18650 |
JJ |
denotes |
Individual |
| T9492 |
18663-18670 |
NNS |
denotes |
domains |
| T9493 |
18651-18662 |
JJ |
denotes |
pericentric |
| T9494 |
18703-18708 |
VBN |
denotes |
found |
| T9495 |
18671-18675 |
IN |
denotes |
from |
| T9496 |
18676-18682 |
JJ |
denotes |
single |
| T9497 |
18683-18694 |
NNS |
denotes |
chromosomes |
| T9498 |
18695-18698 |
VBP |
denotes |
are |
| T9499 |
18699-18702 |
RB |
denotes |
now |
| T9500 |
18709-18715 |
CC |
denotes |
either |
| T9501 |
18716-18724 |
JJ |
denotes |
isolated |
| T9502 |
18725-18727 |
CC |
denotes |
or |
| T9503 |
18728-18738 |
JJ |
denotes |
aggregated |
| T9504 |
18739-18741 |
IN |
denotes |
in |
| T9505 |
18742-18743 |
DT |
denotes |
a |
| T9506 |
18744-18751 |
NN |
denotes |
pattern |
| T9507 |
18752-18756 |
RBR |
denotes |
less |
| T9508 |
18757-18762 |
JJ |
denotes |
dense |
| T9509 |
18763-18767 |
IN |
denotes |
than |
| T9510 |
18768-18771 |
DT |
denotes |
the |
| T9511 |
18780-18788 |
NNS |
denotes |
clusters |
| T9512 |
18772-18779 |
JJ |
denotes |
regular |
| T9513 |
18789-18797 |
VBN |
denotes |
observed |
| T9514 |
18798-18800 |
IN |
denotes |
in |
| T9515 |
18801-18808 |
NN |
denotes |
control |
| T9516 |
18809-18814 |
NNS |
denotes |
cells |
| T9517 |
18815-18816 |
-LRB- |
denotes |
( |
| T9518 |
18823-18825 |
NN |
denotes |
4B |
| T9519 |
18816-18822 |
NN |
denotes |
Figure |
| T9520 |
18825-18826 |
-RRB- |
denotes |
) |
| T9521 |
18826-18827 |
. |
denotes |
. |
| T9522 |
18827-18981 |
sentence |
denotes |
Such aggregates, which are often found at the nuclear periphery, are also revealed by DAPI staining as a typical signature of p150CAF-1 loss-of-function. |
| T9523 |
18828-18832 |
JJ |
denotes |
Such |
| T9524 |
18833-18843 |
NNS |
denotes |
aggregates |
| T9525 |
18902-18910 |
VBN |
denotes |
revealed |
| T9526 |
18843-18845 |
, |
denotes |
, |
| T9527 |
18845-18850 |
WDT |
denotes |
which |
| T9528 |
18861-18866 |
VBN |
denotes |
found |
| T9529 |
18851-18854 |
VBP |
denotes |
are |
| T9530 |
18855-18860 |
RB |
denotes |
often |
| T9531 |
18867-18869 |
IN |
denotes |
at |
| T9532 |
18870-18873 |
DT |
denotes |
the |
| T9533 |
18882-18891 |
NN |
denotes |
periphery |
| T9534 |
18874-18881 |
JJ |
denotes |
nuclear |
| T9535 |
18891-18893 |
, |
denotes |
, |
| T9536 |
18893-18896 |
VBP |
denotes |
are |
| T9537 |
18897-18901 |
RB |
denotes |
also |
| T9538 |
18911-18913 |
IN |
denotes |
by |
| T9539 |
18914-18918 |
NN |
denotes |
DAPI |
| T9540 |
18919-18927 |
NN |
denotes |
staining |
| T9541 |
18928-18930 |
IN |
denotes |
as |
| T9542 |
18931-18932 |
DT |
denotes |
a |
| T9543 |
18941-18950 |
NN |
denotes |
signature |
| T9544 |
18933-18940 |
JJ |
denotes |
typical |
| T9545 |
18951-18953 |
IN |
denotes |
of |
| T9546 |
18954-18961 |
NN |
denotes |
p150CAF |
| T9547 |
18961-18962 |
HYPH |
denotes |
- |
| T9548 |
18962-18963 |
CD |
denotes |
1 |
| T9549 |
18964-18968 |
NN |
denotes |
loss |
| T9550 |
18968-18969 |
HYPH |
denotes |
- |
| T9551 |
18969-18971 |
IN |
denotes |
of |
| T9552 |
18971-18972 |
HYPH |
denotes |
- |
| T9553 |
18972-18980 |
NN |
denotes |
function |
| T9554 |
18980-18981 |
. |
denotes |
. |
| T9555 |
18981-19288 |
sentence |
denotes |
Quantification of fluorescence along a line randomly drawn across the nucleus revealed lower fluorescence intensity and a broader distribution of DAPI and major satellite hybridization signals in p150CAF-1-depleted cells (Figure 4C and 4D), indicating decondensation of pericentric heterochromatin domains. |
| T9556 |
18982-18996 |
NN |
denotes |
Quantification |
| T9557 |
19060-19068 |
VBD |
denotes |
revealed |
| T9558 |
18997-18999 |
IN |
denotes |
of |
| T9559 |
19000-19012 |
NN |
denotes |
fluorescence |
| T9560 |
19013-19018 |
IN |
denotes |
along |
| T9561 |
19019-19020 |
DT |
denotes |
a |
| T9562 |
19021-19025 |
NN |
denotes |
line |
| T9563 |
19026-19034 |
RB |
denotes |
randomly |
| T9564 |
19035-19040 |
VBN |
denotes |
drawn |
| T9565 |
19041-19047 |
IN |
denotes |
across |
| T9566 |
19048-19051 |
DT |
denotes |
the |
| T9567 |
19052-19059 |
NN |
denotes |
nucleus |
| T9568 |
19069-19074 |
JJR |
denotes |
lower |
| T9569 |
19088-19097 |
NN |
denotes |
intensity |
| T9570 |
19075-19087 |
NN |
denotes |
fluorescence |
| T9571 |
19098-19101 |
CC |
denotes |
and |
| T9572 |
19102-19103 |
DT |
denotes |
a |
| T9573 |
19112-19124 |
NN |
denotes |
distribution |
| T9574 |
19104-19111 |
JJR |
denotes |
broader |
| T9575 |
19125-19127 |
IN |
denotes |
of |
| T9576 |
19128-19132 |
NN |
denotes |
DAPI |
| T9577 |
19133-19136 |
CC |
denotes |
and |
| T9578 |
19137-19142 |
JJ |
denotes |
major |
| T9579 |
19167-19174 |
NNS |
denotes |
signals |
| T9580 |
19143-19152 |
NN |
denotes |
satellite |
| T9581 |
19153-19166 |
NN |
denotes |
hybridization |
| T9582 |
19175-19177 |
IN |
denotes |
in |
| T9583 |
19178-19185 |
NN |
denotes |
p150CAF |
| T9584 |
19188-19196 |
VBN |
denotes |
depleted |
| T9585 |
19185-19186 |
HYPH |
denotes |
- |
| T9586 |
19186-19187 |
CD |
denotes |
1 |
| T9587 |
19187-19188 |
HYPH |
denotes |
- |
| T9588 |
19197-19202 |
NNS |
denotes |
cells |
| T9589 |
19203-19204 |
-LRB- |
denotes |
( |
| T9590 |
19211-19213 |
NN |
denotes |
4C |
| T9591 |
19204-19210 |
NN |
denotes |
Figure |
| T9592 |
19214-19217 |
CC |
denotes |
and |
| T9593 |
19218-19220 |
NN |
denotes |
4D |
| T9594 |
19220-19221 |
-RRB- |
denotes |
) |
| T9595 |
19221-19223 |
, |
denotes |
, |
| T9596 |
19223-19233 |
VBG |
denotes |
indicating |
| T9597 |
19234-19248 |
NN |
denotes |
decondensation |
| T9598 |
19249-19251 |
IN |
denotes |
of |
| T9599 |
19252-19263 |
JJ |
denotes |
pericentric |
| T9600 |
19280-19287 |
NNS |
denotes |
domains |
| T9601 |
19264-19279 |
NN |
denotes |
heterochromatin |
| T9602 |
19287-19288 |
. |
denotes |
. |
| T9603 |
19288-19455 |
sentence |
denotes |
In contrast, centric domains showed an intensity and shape similar to control cells, suggesting that they remain unaffected by p150CAF-1 depletion (Figure 4C and 4D). |
| T9604 |
19289-19291 |
IN |
denotes |
In |
| T9605 |
19318-19324 |
VBD |
denotes |
showed |
| T9606 |
19292-19300 |
NN |
denotes |
contrast |
| T9607 |
19300-19302 |
, |
denotes |
, |
| T9608 |
19302-19309 |
JJ |
denotes |
centric |
| T9609 |
19310-19317 |
NNS |
denotes |
domains |
| T9610 |
19325-19327 |
DT |
denotes |
an |
| T9611 |
19328-19337 |
NN |
denotes |
intensity |
| T9612 |
19338-19341 |
CC |
denotes |
and |
| T9613 |
19342-19347 |
NN |
denotes |
shape |
| T9614 |
19348-19355 |
JJ |
denotes |
similar |
| T9615 |
19356-19358 |
IN |
denotes |
to |
| T9616 |
19359-19366 |
NN |
denotes |
control |
| T9617 |
19367-19372 |
NNS |
denotes |
cells |
| T9618 |
19372-19374 |
, |
denotes |
, |
| T9619 |
19374-19384 |
VBG |
denotes |
suggesting |
| T9620 |
19385-19389 |
IN |
denotes |
that |
| T9621 |
19395-19401 |
VBP |
denotes |
remain |
| T9622 |
19390-19394 |
PRP |
denotes |
they |
| T9623 |
19402-19412 |
JJ |
denotes |
unaffected |
| T9624 |
19413-19415 |
IN |
denotes |
by |
| T9625 |
19416-19423 |
NN |
denotes |
p150CAF |
| T9626 |
19426-19435 |
NN |
denotes |
depletion |
| T9627 |
19423-19424 |
HYPH |
denotes |
- |
| T9628 |
19424-19425 |
CD |
denotes |
1 |
| T9629 |
19436-19437 |
-LRB- |
denotes |
( |
| T9630 |
19444-19446 |
NN |
denotes |
4C |
| T9631 |
19437-19443 |
NN |
denotes |
Figure |
| T9632 |
19447-19450 |
CC |
denotes |
and |
| T9633 |
19451-19453 |
NN |
denotes |
4D |
| T9634 |
19453-19454 |
-RRB- |
denotes |
) |
| T9635 |
19454-19455 |
. |
denotes |
. |
| T9636 |
19455-19599 |
sentence |
denotes |
In conclusion, these results show that p150CAF-1 is required for the proper condensation and clustering of pericentric heterochromatin domains. |
| T9637 |
19456-19458 |
IN |
denotes |
In |
| T9638 |
19485-19489 |
VBP |
denotes |
show |
| T9639 |
19459-19469 |
NN |
denotes |
conclusion |
| T9640 |
19469-19471 |
, |
denotes |
, |
| T9641 |
19471-19476 |
DT |
denotes |
these |
| T9642 |
19477-19484 |
NNS |
denotes |
results |
| T9643 |
19490-19494 |
IN |
denotes |
that |
| T9644 |
19508-19516 |
VBN |
denotes |
required |
| T9645 |
19495-19502 |
NN |
denotes |
p150CAF |
| T9646 |
19502-19503 |
HYPH |
denotes |
- |
| T9647 |
19503-19504 |
CD |
denotes |
1 |
| T9648 |
19505-19507 |
VBZ |
denotes |
is |
| T9649 |
19517-19520 |
IN |
denotes |
for |
| T9650 |
19521-19524 |
DT |
denotes |
the |
| T9651 |
19532-19544 |
NN |
denotes |
condensation |
| T9652 |
19525-19531 |
JJ |
denotes |
proper |
| T9653 |
19545-19548 |
CC |
denotes |
and |
| T9654 |
19549-19559 |
NN |
denotes |
clustering |
| T9655 |
19560-19562 |
IN |
denotes |
of |
| T9656 |
19563-19574 |
JJ |
denotes |
pericentric |
| T9657 |
19591-19598 |
NNS |
denotes |
domains |
| T9658 |
19575-19590 |
NN |
denotes |
heterochromatin |
| T9659 |
19598-19599 |
. |
denotes |
. |
| T9660 |
19599-21554 |
sentence |
denotes |
Figure 4 Depletion of p150CAF-1 Leads to Loss of Clustering, Altered Localization, and Decondensation of Pericentric Heterochromatin Domains
Distribution of pericentric (red) and centric (green) domains was analyzed in the interphase nuclei of mouse ES cells by DNA FISH, using major satellite (pSAT) [47] and minor satellite (pMR150) [48] DNA probes, respectively. (A) In ES cells expressing control (cont) siRNA, pericentric regions from several chromosomes associate in clusters (red). These chromocenters form foci as revealed by DAPI staining (left-hand image), while centric regions (green) remain independent entities at the periphery of these domains. The right-hand image shows the merge between the pericentric and centric FISH signals.
(B) The organization of pericentric domains was altered in cells expressing p150CAF-1 siRNA. Instead of forming well-defined chromocenters, pericentric domains were found either isolated or associated in heterogeneous aggregates of various sizes, often at the nuclear periphery. Scale bar = 10 μm.
(C) Control ES cells. Fluorescence was quantified along a line randomly drawn across the nucleus in the merged image and data were plotted. One can distinguish clear peaks corresponding to chromocenters (red) and the condensed minor satellites (green).
(D) ES cells expressing p150CAF-1 siRNA. p150CAF-1 depletion led to a lower fluorescence intensity and a broader distribution of signals corresponding to DAPI (blue) and major satellite hybridization (red, plot) while the organization of the minor satellites remained unaffected. Insets in the right-hand images show a typical chromocenter in control cells (C) and a disrupted chromocenter in p150CAF-1-depleted cells (D). Given the known role of CAF-1 in the deposition of histone H3.1 and H4 associated with DNA synthesis [11,12], we wondered whether this defect in higher-order chromatin organization could reflect an aberrant nucleosomal organization. |
| T9661 |
21322-21327 |
VBN |
denotes |
Given |
| T9662 |
21435-21443 |
VBD |
denotes |
wondered |
| T9663 |
21328-21331 |
DT |
denotes |
the |
| T9664 |
21338-21342 |
NN |
denotes |
role |
| T9665 |
21332-21337 |
VBN |
denotes |
known |
| T9666 |
21343-21345 |
IN |
denotes |
of |
| T9667 |
21346-21349 |
NN |
denotes |
CAF |
| T9668 |
21349-21350 |
HYPH |
denotes |
- |
| T9669 |
21350-21351 |
CD |
denotes |
1 |
| T9670 |
21352-21354 |
IN |
denotes |
in |
| T9671 |
21355-21358 |
DT |
denotes |
the |
| T9672 |
21359-21369 |
NN |
denotes |
deposition |
| T9673 |
21370-21372 |
IN |
denotes |
of |
| T9674 |
21373-21380 |
NN |
denotes |
histone |
| T9675 |
21381-21385 |
NN |
denotes |
H3.1 |
| T9676 |
21386-21389 |
CC |
denotes |
and |
| T9677 |
21390-21392 |
NN |
denotes |
H4 |
| T9678 |
21393-21403 |
VBN |
denotes |
associated |
| T9679 |
21404-21408 |
IN |
denotes |
with |
| T9680 |
21409-21412 |
NN |
denotes |
DNA |
| T9681 |
21413-21422 |
NN |
denotes |
synthesis |
| T9682 |
21423-21424 |
-LRB- |
denotes |
[ |
| T9683 |
21427-21429 |
CD |
denotes |
12 |
| T9684 |
21424-21426 |
CD |
denotes |
11 |
| T9685 |
21426-21427 |
, |
denotes |
, |
| T9686 |
21429-21430 |
-RRB- |
denotes |
] |
| T9687 |
21430-21432 |
, |
denotes |
, |
| T9688 |
21432-21434 |
PRP |
denotes |
we |
| T9689 |
21444-21451 |
IN |
denotes |
whether |
| T9690 |
21509-21516 |
VB |
denotes |
reflect |
| T9691 |
21452-21456 |
DT |
denotes |
this |
| T9692 |
21457-21463 |
NN |
denotes |
defect |
| T9693 |
21464-21466 |
IN |
denotes |
in |
| T9694 |
21467-21473 |
JJR |
denotes |
higher |
| T9695 |
21474-21479 |
NN |
denotes |
order |
| T9696 |
21473-21474 |
HYPH |
denotes |
- |
| T9697 |
21490-21502 |
NN |
denotes |
organization |
| T9698 |
21480-21489 |
NN |
denotes |
chromatin |
| T9699 |
21503-21508 |
MD |
denotes |
could |
| T9700 |
21517-21519 |
DT |
denotes |
an |
| T9701 |
21541-21553 |
NN |
denotes |
organization |
| T9702 |
21520-21528 |
JJ |
denotes |
aberrant |
| T9703 |
21529-21540 |
JJ |
denotes |
nucleosomal |
| T9704 |
21553-21554 |
. |
denotes |
. |
| T9705 |
21554-21781 |
sentence |
denotes |
Using DNase I and micrococcal nuclease (MNase) assays, we could not observe any significant difference between control and p150CAF-1-depleted ES cells at the level of bulk genome chromatin or at pericentric repeats (Figure 5). |
| T9706 |
21555-21560 |
VBG |
denotes |
Using |
| T9707 |
21623-21630 |
VB |
denotes |
observe |
| T9708 |
21561-21566 |
NN |
denotes |
DNase |
| T9709 |
21567-21568 |
CD |
denotes |
I |
| T9710 |
21569-21572 |
CC |
denotes |
and |
| T9711 |
21573-21584 |
JJ |
denotes |
micrococcal |
| T9712 |
21585-21593 |
NN |
denotes |
nuclease |
| T9713 |
21602-21608 |
NNS |
denotes |
assays |
| T9714 |
21594-21595 |
-LRB- |
denotes |
( |
| T9715 |
21595-21600 |
NN |
denotes |
MNase |
| T9716 |
21600-21601 |
-RRB- |
denotes |
) |
| T9717 |
21608-21610 |
, |
denotes |
, |
| T9718 |
21610-21612 |
PRP |
denotes |
we |
| T9719 |
21613-21618 |
MD |
denotes |
could |
| T9720 |
21619-21622 |
RB |
denotes |
not |
| T9721 |
21631-21634 |
DT |
denotes |
any |
| T9722 |
21647-21657 |
NN |
denotes |
difference |
| T9723 |
21635-21646 |
JJ |
denotes |
significant |
| T9724 |
21658-21665 |
IN |
denotes |
between |
| T9725 |
21666-21673 |
NN |
denotes |
control |
| T9726 |
21700-21705 |
NNS |
denotes |
cells |
| T9727 |
21674-21677 |
CC |
denotes |
and |
| T9728 |
21678-21685 |
NN |
denotes |
p150CAF |
| T9729 |
21688-21696 |
VBN |
denotes |
depleted |
| T9730 |
21685-21686 |
HYPH |
denotes |
- |
| T9731 |
21686-21687 |
CD |
denotes |
1 |
| T9732 |
21687-21688 |
HYPH |
denotes |
- |
| T9733 |
21697-21699 |
NN |
denotes |
ES |
| T9734 |
21706-21708 |
IN |
denotes |
at |
| T9735 |
21709-21712 |
DT |
denotes |
the |
| T9736 |
21713-21718 |
NN |
denotes |
level |
| T9737 |
21719-21721 |
IN |
denotes |
of |
| T9738 |
21722-21726 |
NN |
denotes |
bulk |
| T9739 |
21734-21743 |
NN |
denotes |
chromatin |
| T9740 |
21727-21733 |
NN |
denotes |
genome |
| T9741 |
21744-21746 |
CC |
denotes |
or |
| T9742 |
21747-21749 |
IN |
denotes |
at |
| T9743 |
21750-21761 |
JJ |
denotes |
pericentric |
| T9744 |
21762-21769 |
NNS |
denotes |
repeats |
| T9745 |
21770-21771 |
-LRB- |
denotes |
( |
| T9746 |
21771-21777 |
NN |
denotes |
Figure |
| T9747 |
21778-21779 |
CD |
denotes |
5 |
| T9748 |
21779-21780 |
-RRB- |
denotes |
) |
| T9749 |
21780-21781 |
. |
denotes |
. |
| T9750 |
21781-21964 |
sentence |
denotes |
In a second series of experiments, we compared the association of histone H3 with chromatin in nuclei isolated from cells transfected with control and p150CAF-1 RNAi plasmid vectors. |
| T9751 |
21782-21784 |
IN |
denotes |
In |
| T9752 |
21820-21828 |
VBD |
denotes |
compared |
| T9753 |
21785-21786 |
DT |
denotes |
a |
| T9754 |
21794-21800 |
NN |
denotes |
series |
| T9755 |
21787-21793 |
JJ |
denotes |
second |
| T9756 |
21801-21803 |
IN |
denotes |
of |
| T9757 |
21804-21815 |
NNS |
denotes |
experiments |
| T9758 |
21815-21817 |
, |
denotes |
, |
| T9759 |
21817-21819 |
PRP |
denotes |
we |
| T9760 |
21829-21832 |
DT |
denotes |
the |
| T9761 |
21833-21844 |
NN |
denotes |
association |
| T9762 |
21845-21847 |
IN |
denotes |
of |
| T9763 |
21848-21855 |
NN |
denotes |
histone |
| T9764 |
21856-21858 |
NN |
denotes |
H3 |
| T9765 |
21859-21863 |
IN |
denotes |
with |
| T9766 |
21864-21873 |
NN |
denotes |
chromatin |
| T9767 |
21874-21876 |
IN |
denotes |
in |
| T9768 |
21877-21883 |
NNS |
denotes |
nuclei |
| T9769 |
21884-21892 |
VBN |
denotes |
isolated |
| T9770 |
21893-21897 |
IN |
denotes |
from |
| T9771 |
21898-21903 |
NNS |
denotes |
cells |
| T9772 |
21904-21915 |
VBN |
denotes |
transfected |
| T9773 |
21916-21920 |
IN |
denotes |
with |
| T9774 |
21921-21928 |
NN |
denotes |
control |
| T9775 |
21956-21963 |
NNS |
denotes |
vectors |
| T9776 |
21929-21932 |
CC |
denotes |
and |
| T9777 |
21933-21940 |
NN |
denotes |
p150CAF |
| T9778 |
21940-21941 |
HYPH |
denotes |
- |
| T9779 |
21941-21942 |
CD |
denotes |
1 |
| T9780 |
21943-21947 |
NN |
denotes |
RNAi |
| T9781 |
21948-21955 |
NN |
denotes |
plasmid |
| T9782 |
21963-21964 |
. |
denotes |
. |
| T9783 |
21964-22070 |
sentence |
denotes |
Nuclei were incubated in buffers with different salt concentrations ranging from 100 mM NaCl to 1 M NaCl. |
| T9784 |
21965-21971 |
NNS |
denotes |
Nuclei |
| T9785 |
21977-21986 |
VBN |
denotes |
incubated |
| T9786 |
21972-21976 |
VBD |
denotes |
were |
| T9787 |
21987-21989 |
IN |
denotes |
in |
| T9788 |
21990-21997 |
NNS |
denotes |
buffers |
| T9789 |
21998-22002 |
IN |
denotes |
with |
| T9790 |
22003-22012 |
JJ |
denotes |
different |
| T9791 |
22018-22032 |
NNS |
denotes |
concentrations |
| T9792 |
22013-22017 |
NN |
denotes |
salt |
| T9793 |
22033-22040 |
VBG |
denotes |
ranging |
| T9794 |
22041-22045 |
IN |
denotes |
from |
| T9795 |
22046-22049 |
CD |
denotes |
100 |
| T9796 |
22050-22052 |
NN |
denotes |
mM |
| T9797 |
22053-22057 |
NN |
denotes |
NaCl |
| T9798 |
22058-22060 |
IN |
denotes |
to |
| T9799 |
22061-22062 |
CD |
denotes |
1 |
| T9800 |
22063-22064 |
NN |
denotes |
M |
| T9801 |
22065-22069 |
NN |
denotes |
NaCl |
| T9802 |
22069-22070 |
. |
denotes |
. |
| T9803 |
22070-22235 |
sentence |
denotes |
In all conditions, the amount of histone H3 remaining associated with chromatin was indistinguishable in control and p150CAF-1-depleted ES cells (unpublished data). |
| T9804 |
22071-22073 |
IN |
denotes |
In |
| T9805 |
22151-22154 |
VBD |
denotes |
was |
| T9806 |
22074-22077 |
DT |
denotes |
all |
| T9807 |
22078-22088 |
NNS |
denotes |
conditions |
| T9808 |
22088-22090 |
, |
denotes |
, |
| T9809 |
22090-22093 |
DT |
denotes |
the |
| T9810 |
22094-22100 |
NN |
denotes |
amount |
| T9811 |
22101-22103 |
IN |
denotes |
of |
| T9812 |
22104-22111 |
NN |
denotes |
histone |
| T9813 |
22112-22114 |
NN |
denotes |
H3 |
| T9814 |
22115-22124 |
VBG |
denotes |
remaining |
| T9815 |
22125-22135 |
VBN |
denotes |
associated |
| T9816 |
22136-22140 |
IN |
denotes |
with |
| T9817 |
22141-22150 |
NN |
denotes |
chromatin |
| T9818 |
22155-22172 |
JJ |
denotes |
indistinguishable |
| T9819 |
22173-22175 |
IN |
denotes |
in |
| T9820 |
22176-22183 |
NN |
denotes |
control |
| T9821 |
22210-22215 |
NNS |
denotes |
cells |
| T9822 |
22184-22187 |
CC |
denotes |
and |
| T9823 |
22188-22195 |
NN |
denotes |
p150CAF |
| T9824 |
22198-22206 |
VBN |
denotes |
depleted |
| T9825 |
22195-22196 |
HYPH |
denotes |
- |
| T9826 |
22196-22197 |
CD |
denotes |
1 |
| T9827 |
22197-22198 |
HYPH |
denotes |
- |
| T9828 |
22207-22209 |
NN |
denotes |
ES |
| T9829 |
22216-22217 |
-LRB- |
denotes |
( |
| T9830 |
22229-22233 |
NNS |
denotes |
data |
| T9831 |
22217-22228 |
JJ |
denotes |
unpublished |
| T9832 |
22233-22234 |
-RRB- |
denotes |
) |
| T9833 |
22234-22235 |
. |
denotes |
. |
| T9834 |
22235-22401 |
sentence |
denotes |
Therefore, the loss of clustering and decondensation of pericentric heterochromatin are unlikely to be the consequence of severe defects in nucleosomal organization. |
| T9835 |
22236-22245 |
RB |
denotes |
Therefore |
| T9836 |
22320-22323 |
VBP |
denotes |
are |
| T9837 |
22245-22247 |
, |
denotes |
, |
| T9838 |
22247-22250 |
DT |
denotes |
the |
| T9839 |
22251-22255 |
NN |
denotes |
loss |
| T9840 |
22256-22258 |
IN |
denotes |
of |
| T9841 |
22259-22269 |
NN |
denotes |
clustering |
| T9842 |
22270-22273 |
CC |
denotes |
and |
| T9843 |
22274-22288 |
NN |
denotes |
decondensation |
| T9844 |
22289-22291 |
IN |
denotes |
of |
| T9845 |
22292-22303 |
JJ |
denotes |
pericentric |
| T9846 |
22304-22319 |
NN |
denotes |
heterochromatin |
| T9847 |
22324-22332 |
JJ |
denotes |
unlikely |
| T9848 |
22333-22335 |
TO |
denotes |
to |
| T9849 |
22336-22338 |
VB |
denotes |
be |
| T9850 |
22339-22342 |
DT |
denotes |
the |
| T9851 |
22343-22354 |
NN |
denotes |
consequence |
| T9852 |
22355-22357 |
IN |
denotes |
of |
| T9853 |
22358-22364 |
JJ |
denotes |
severe |
| T9854 |
22365-22372 |
NNS |
denotes |
defects |
| T9855 |
22373-22375 |
IN |
denotes |
in |
| T9856 |
22376-22387 |
JJ |
denotes |
nucleosomal |
| T9857 |
22388-22400 |
NN |
denotes |
organization |
| T9858 |
22400-22401 |
. |
denotes |
. |
| T9859 |
22401-23073 |
sentence |
denotes |
Figure 5 Nucleosomal Organization Is Not Altered in p150CAF-1-Depleted ES Cells
Nuclei were prepared from ES cells transfected with control or p150CAF-1 siRNA vector. Nuclei were digested with increasing amounts of DNase I or MNase. (A) After digestion with the indicated nucleases, total DNA was prepared and run onto an agarose gel which was stained with ethidium bromide to reveal bulk genomic DNA.
(B) The DNA was blotted onto a nylon membrane, which was then hybridized with the α-32P-labeled pSAT major satellite repeat probe [47]. Our findings showed that the nuclear localization of HP1α is severely altered in Chaf1a −/− embryos and p150CAF-1-depleted ES cells. |
| T9860 |
22941-22944 |
PRP$ |
denotes |
Our |
| T9861 |
22945-22953 |
NNS |
denotes |
findings |
| T9862 |
22954-22960 |
VBD |
denotes |
showed |
| T9863 |
22961-22965 |
IN |
denotes |
that |
| T9864 |
23011-23018 |
VBN |
denotes |
altered |
| T9865 |
22966-22969 |
DT |
denotes |
the |
| T9866 |
22978-22990 |
NN |
denotes |
localization |
| T9867 |
22970-22977 |
JJ |
denotes |
nuclear |
| T9868 |
22991-22993 |
IN |
denotes |
of |
| T9869 |
22994-22998 |
NN |
denotes |
HP1α |
| T9870 |
22999-23001 |
VBZ |
denotes |
is |
| T9871 |
23002-23010 |
RB |
denotes |
severely |
| T9872 |
23019-23021 |
IN |
denotes |
in |
| T9873 |
23022-23028 |
NN |
denotes |
Chaf1a |
| T9874 |
23033-23040 |
NNS |
denotes |
embryos |
| T9875 |
23029-23030 |
SYM |
denotes |
− |
| T9876 |
23030-23031 |
HYPH |
denotes |
/ |
| T9877 |
23031-23032 |
SYM |
denotes |
− |
| T9878 |
23041-23044 |
CC |
denotes |
and |
| T9879 |
23045-23052 |
NN |
denotes |
p150CAF |
| T9880 |
23055-23063 |
VBN |
denotes |
depleted |
| T9881 |
23052-23053 |
HYPH |
denotes |
- |
| T9882 |
23053-23054 |
CD |
denotes |
1 |
| T9883 |
23054-23055 |
HYPH |
denotes |
- |
| T9884 |
23067-23072 |
NNS |
denotes |
cells |
| T9885 |
23064-23066 |
NN |
denotes |
ES |
| T9886 |
23072-23073 |
. |
denotes |
. |
| T9887 |
23073-23194 |
sentence |
denotes |
We therefore examined the status of other epigenetic marks previously shown to characterize pericentric heterochromatin. |
| T9888 |
23074-23076 |
PRP |
denotes |
We |
| T9889 |
23087-23095 |
VBD |
denotes |
examined |
| T9890 |
23077-23086 |
RB |
denotes |
therefore |
| T9891 |
23096-23099 |
DT |
denotes |
the |
| T9892 |
23100-23106 |
NN |
denotes |
status |
| T9893 |
23107-23109 |
IN |
denotes |
of |
| T9894 |
23110-23115 |
JJ |
denotes |
other |
| T9895 |
23127-23132 |
NNS |
denotes |
marks |
| T9896 |
23116-23126 |
JJ |
denotes |
epigenetic |
| T9897 |
23133-23143 |
RB |
denotes |
previously |
| T9898 |
23144-23149 |
VBN |
denotes |
shown |
| T9899 |
23150-23152 |
TO |
denotes |
to |
| T9900 |
23153-23165 |
VB |
denotes |
characterize |
| T9901 |
23166-23177 |
JJ |
denotes |
pericentric |
| T9902 |
23178-23193 |
NN |
denotes |
heterochromatin |
| T9903 |
23193-23194 |
. |
denotes |
. |
| T9904 |
23194-23355 |
sentence |
denotes |
We first tested DNA CpG methylation [25] at major satellite repeats and found no significant difference between control and p150CAF-1-depleted cells (Figure 6). |
| T9905 |
23195-23197 |
PRP |
denotes |
We |
| T9906 |
23204-23210 |
VBD |
denotes |
tested |
| T9907 |
23198-23203 |
RB |
denotes |
first |
| T9908 |
23211-23214 |
NN |
denotes |
DNA |
| T9909 |
23219-23230 |
NN |
denotes |
methylation |
| T9910 |
23215-23218 |
NN |
denotes |
CpG |
| T9911 |
23231-23232 |
-LRB- |
denotes |
[ |
| T9912 |
23232-23234 |
CD |
denotes |
25 |
| T9913 |
23234-23235 |
-RRB- |
denotes |
] |
| T9914 |
23236-23238 |
IN |
denotes |
at |
| T9915 |
23239-23244 |
JJ |
denotes |
major |
| T9916 |
23255-23262 |
NNS |
denotes |
repeats |
| T9917 |
23245-23254 |
NN |
denotes |
satellite |
| T9918 |
23263-23266 |
CC |
denotes |
and |
| T9919 |
23267-23272 |
VBD |
denotes |
found |
| T9920 |
23273-23275 |
DT |
denotes |
no |
| T9921 |
23288-23298 |
NN |
denotes |
difference |
| T9922 |
23276-23287 |
JJ |
denotes |
significant |
| T9923 |
23299-23306 |
IN |
denotes |
between |
| T9924 |
23307-23314 |
NN |
denotes |
control |
| T9925 |
23338-23343 |
NNS |
denotes |
cells |
| T9926 |
23315-23318 |
CC |
denotes |
and |
| T9927 |
23319-23326 |
NN |
denotes |
p150CAF |
| T9928 |
23329-23337 |
VBN |
denotes |
depleted |
| T9929 |
23326-23327 |
HYPH |
denotes |
- |
| T9930 |
23327-23328 |
CD |
denotes |
1 |
| T9931 |
23328-23329 |
HYPH |
denotes |
- |
| T9932 |
23344-23345 |
-LRB- |
denotes |
( |
| T9933 |
23345-23351 |
NN |
denotes |
Figure |
| T9934 |
23352-23353 |
CD |
denotes |
6 |
| T9935 |
23353-23354 |
-RRB- |
denotes |
) |
| T9936 |
23354-23355 |
. |
denotes |
. |
| T9937 |
23355-23502 |
sentence |
denotes |
As the LTM7 ES cell line that we used in our RNAi experiments is a female (XX) cell line, DNA methylation is globally reduced in these cells [26]. |
| T9938 |
23356-23358 |
IN |
denotes |
As |
| T9939 |
23418-23420 |
VBZ |
denotes |
is |
| T9940 |
23359-23362 |
DT |
denotes |
the |
| T9941 |
23376-23380 |
NN |
denotes |
line |
| T9942 |
23363-23367 |
NN |
denotes |
LTM7 |
| T9943 |
23368-23370 |
NN |
denotes |
ES |
| T9944 |
23371-23375 |
NN |
denotes |
cell |
| T9945 |
23381-23385 |
WDT |
denotes |
that |
| T9946 |
23389-23393 |
VBD |
denotes |
used |
| T9947 |
23386-23388 |
PRP |
denotes |
we |
| T9948 |
23394-23396 |
IN |
denotes |
in |
| T9949 |
23397-23400 |
PRP$ |
denotes |
our |
| T9950 |
23406-23417 |
NNS |
denotes |
experiments |
| T9951 |
23401-23405 |
NN |
denotes |
RNAi |
| T9952 |
23474-23481 |
VBN |
denotes |
reduced |
| T9953 |
23421-23422 |
DT |
denotes |
a |
| T9954 |
23440-23444 |
NN |
denotes |
line |
| T9955 |
23423-23429 |
JJ |
denotes |
female |
| T9956 |
23430-23431 |
-LRB- |
denotes |
( |
| T9957 |
23431-23433 |
NN |
denotes |
XX |
| T9958 |
23433-23434 |
-RRB- |
denotes |
) |
| T9959 |
23435-23439 |
NN |
denotes |
cell |
| T9960 |
23444-23446 |
, |
denotes |
, |
| T9961 |
23446-23449 |
NN |
denotes |
DNA |
| T9962 |
23450-23461 |
NN |
denotes |
methylation |
| T9963 |
23462-23464 |
VBZ |
denotes |
is |
| T9964 |
23465-23473 |
RB |
denotes |
globally |
| T9965 |
23482-23484 |
IN |
denotes |
in |
| T9966 |
23485-23490 |
DT |
denotes |
these |
| T9967 |
23491-23496 |
NNS |
denotes |
cells |
| T9968 |
23497-23498 |
-LRB- |
denotes |
[ |
| T9969 |
23498-23500 |
CD |
denotes |
26 |
| T9970 |
23500-23501 |
-RRB- |
denotes |
] |
| T9971 |
23501-23502 |
. |
denotes |
. |
| T9972 |
23502-23908 |
sentence |
denotes |
To rule out the possibility that hypomethylation of pericentric repeats might contribute to the destabilization of heterochromatin domains in p150CAF-1-depleted ES cells, we tested our RNAi plasmid vector in a XY ES cell line, and confirmed that loss of p150CAF-1 leads to disruption of heterochromatin organization independently of the degree of DNA methylation at pericentric repeats (unpublished data). |
| T9973 |
23503-23505 |
TO |
denotes |
To |
| T9974 |
23506-23510 |
VB |
denotes |
rule |
| T9975 |
23677-23683 |
VBD |
denotes |
tested |
| T9976 |
23511-23514 |
RP |
denotes |
out |
| T9977 |
23515-23518 |
DT |
denotes |
the |
| T9978 |
23519-23530 |
NN |
denotes |
possibility |
| T9979 |
23531-23535 |
IN |
denotes |
that |
| T9980 |
23581-23591 |
VB |
denotes |
contribute |
| T9981 |
23536-23551 |
NN |
denotes |
hypomethylation |
| T9982 |
23552-23554 |
IN |
denotes |
of |
| T9983 |
23555-23566 |
JJ |
denotes |
pericentric |
| T9984 |
23567-23574 |
NNS |
denotes |
repeats |
| T9985 |
23575-23580 |
MD |
denotes |
might |
| T9986 |
23592-23594 |
IN |
denotes |
to |
| T9987 |
23595-23598 |
DT |
denotes |
the |
| T9988 |
23599-23614 |
NN |
denotes |
destabilization |
| T9989 |
23615-23617 |
IN |
denotes |
of |
| T9990 |
23618-23633 |
NN |
denotes |
heterochromatin |
| T9991 |
23634-23641 |
NNS |
denotes |
domains |
| T9992 |
23642-23644 |
IN |
denotes |
in |
| T9993 |
23645-23652 |
NN |
denotes |
p150CAF |
| T9994 |
23655-23663 |
VBN |
denotes |
depleted |
| T9995 |
23652-23653 |
HYPH |
denotes |
- |
| T9996 |
23653-23654 |
CD |
denotes |
1 |
| T9997 |
23654-23655 |
HYPH |
denotes |
- |
| T9998 |
23667-23672 |
NNS |
denotes |
cells |
| T9999 |
23664-23666 |
NN |
denotes |
ES |
| T10000 |
23672-23674 |
, |
denotes |
, |
| T10001 |
23674-23676 |
PRP |
denotes |
we |
| T10002 |
23684-23687 |
PRP$ |
denotes |
our |
| T10003 |
23701-23707 |
NN |
denotes |
vector |
| T10004 |
23688-23692 |
NN |
denotes |
RNAi |
| T10005 |
23693-23700 |
NN |
denotes |
plasmid |
| T10006 |
23708-23710 |
IN |
denotes |
in |
| T10007 |
23711-23712 |
DT |
denotes |
a |
| T10008 |
23724-23728 |
NN |
denotes |
line |
| T10009 |
23713-23715 |
NN |
denotes |
XY |
| T10010 |
23716-23718 |
NN |
denotes |
ES |
| T10011 |
23719-23723 |
NN |
denotes |
cell |
| T10012 |
23728-23730 |
, |
denotes |
, |
| T10013 |
23730-23733 |
CC |
denotes |
and |
| T10014 |
23734-23743 |
VBD |
denotes |
confirmed |
| T10015 |
23744-23748 |
IN |
denotes |
that |
| T10016 |
23767-23772 |
VBZ |
denotes |
leads |
| T10017 |
23749-23753 |
NN |
denotes |
loss |
| T10018 |
23754-23756 |
IN |
denotes |
of |
| T10019 |
23757-23764 |
NN |
denotes |
p150CAF |
| T10020 |
23764-23765 |
HYPH |
denotes |
- |
| T10021 |
23765-23766 |
CD |
denotes |
1 |
| T10022 |
23773-23775 |
IN |
denotes |
to |
| T10023 |
23776-23786 |
NN |
denotes |
disruption |
| T10024 |
23787-23789 |
IN |
denotes |
of |
| T10025 |
23790-23805 |
NN |
denotes |
heterochromatin |
| T10026 |
23806-23818 |
NN |
denotes |
organization |
| T10027 |
23819-23832 |
RB |
denotes |
independently |
| T10028 |
23833-23835 |
IN |
denotes |
of |
| T10029 |
23836-23839 |
DT |
denotes |
the |
| T10030 |
23840-23846 |
NN |
denotes |
degree |
| T10031 |
23847-23849 |
IN |
denotes |
of |
| T10032 |
23850-23853 |
NN |
denotes |
DNA |
| T10033 |
23854-23865 |
NN |
denotes |
methylation |
| T10034 |
23866-23868 |
IN |
denotes |
at |
| T10035 |
23869-23880 |
JJ |
denotes |
pericentric |
| T10036 |
23881-23888 |
NNS |
denotes |
repeats |
| T10037 |
23889-23890 |
-LRB- |
denotes |
( |
| T10038 |
23902-23906 |
NNS |
denotes |
data |
| T10039 |
23890-23901 |
JJ |
denotes |
unpublished |
| T10040 |
23906-23907 |
-RRB- |
denotes |
) |
| T10041 |
23907-23908 |
. |
denotes |
. |
| T10042 |
23908-24042 |
sentence |
denotes |
We next analyzed specific histone modifications [27] in chromatin immunoprecipitation (ChIP) experiments using native chromatin [28]. |
| T10043 |
23909-23911 |
PRP |
denotes |
We |
| T10044 |
23917-23925 |
VBD |
denotes |
analyzed |
| T10045 |
23912-23916 |
RB |
denotes |
next |
| T10046 |
23926-23934 |
JJ |
denotes |
specific |
| T10047 |
23943-23956 |
NNS |
denotes |
modifications |
| T10048 |
23935-23942 |
NN |
denotes |
histone |
| T10049 |
23957-23958 |
-LRB- |
denotes |
[ |
| T10050 |
23958-23960 |
CD |
denotes |
27 |
| T10051 |
23960-23961 |
-RRB- |
denotes |
] |
| T10052 |
23962-23964 |
IN |
denotes |
in |
| T10053 |
23965-23974 |
NN |
denotes |
chromatin |
| T10054 |
23975-23994 |
NN |
denotes |
immunoprecipitation |
| T10055 |
24002-24013 |
NNS |
denotes |
experiments |
| T10056 |
23995-23996 |
-LRB- |
denotes |
( |
| T10057 |
23996-24000 |
NN |
denotes |
ChIP |
| T10058 |
24000-24001 |
-RRB- |
denotes |
) |
| T10059 |
24014-24019 |
VBG |
denotes |
using |
| T10060 |
24020-24026 |
JJ |
denotes |
native |
| T10061 |
24027-24036 |
NN |
denotes |
chromatin |
| T10062 |
24037-24038 |
-LRB- |
denotes |
[ |
| T10063 |
24038-24040 |
CD |
denotes |
28 |
| T10064 |
24040-24041 |
-RRB- |
denotes |
] |
| T10065 |
24041-24042 |
. |
denotes |
. |
| T10066 |
24042-24209 |
sentence |
denotes |
We found that pericentric DNA was immunoprecipitated with a 2-fold lower efficiency with H4K20me3 [29,30] antibodies following p150CAF-1 depletion (Figure 7A and 7B). |
| T10067 |
24043-24045 |
PRP |
denotes |
We |
| T10068 |
24046-24051 |
VBD |
denotes |
found |
| T10069 |
24052-24056 |
IN |
denotes |
that |
| T10070 |
24077-24095 |
VBN |
denotes |
immunoprecipitated |
| T10071 |
24057-24068 |
JJ |
denotes |
pericentric |
| T10072 |
24069-24072 |
NN |
denotes |
DNA |
| T10073 |
24073-24076 |
VBD |
denotes |
was |
| T10074 |
24096-24100 |
IN |
denotes |
with |
| T10075 |
24101-24102 |
DT |
denotes |
a |
| T10076 |
24116-24126 |
NN |
denotes |
efficiency |
| T10077 |
24103-24104 |
CD |
denotes |
2 |
| T10078 |
24110-24115 |
JJR |
denotes |
lower |
| T10079 |
24104-24105 |
HYPH |
denotes |
- |
| T10080 |
24105-24109 |
RB |
denotes |
fold |
| T10081 |
24127-24131 |
IN |
denotes |
with |
| T10082 |
24132-24140 |
NN |
denotes |
H4K20me3 |
| T10083 |
24149-24159 |
NNS |
denotes |
antibodies |
| T10084 |
24141-24142 |
-LRB- |
denotes |
[ |
| T10085 |
24145-24147 |
CD |
denotes |
30 |
| T10086 |
24142-24144 |
CD |
denotes |
29 |
| T10087 |
24144-24145 |
, |
denotes |
, |
| T10088 |
24147-24148 |
-RRB- |
denotes |
] |
| T10089 |
24160-24169 |
VBG |
denotes |
following |
| T10090 |
24170-24177 |
NN |
denotes |
p150CAF |
| T10091 |
24180-24189 |
NN |
denotes |
depletion |
| T10092 |
24177-24178 |
HYPH |
denotes |
- |
| T10093 |
24178-24179 |
CD |
denotes |
1 |
| T10094 |
24190-24191 |
-LRB- |
denotes |
( |
| T10095 |
24198-24200 |
NN |
denotes |
7A |
| T10096 |
24191-24197 |
NN |
denotes |
Figure |
| T10097 |
24201-24204 |
CC |
denotes |
and |
| T10098 |
24205-24207 |
NN |
denotes |
7B |
| T10099 |
24207-24208 |
-RRB- |
denotes |
) |
| T10100 |
24208-24209 |
. |
denotes |
. |
| T10101 |
24209-24406 |
sentence |
denotes |
Immunoprecipitation of minor satellite repeats in the same experiment was less affected (Figure 7B), showing that loss of p150CAF-1 function mainly affects H4K20me3 at pericentric heterochromatin. |
| T10102 |
24210-24229 |
NN |
denotes |
Immunoprecipitation |
| T10103 |
24289-24297 |
VBN |
denotes |
affected |
| T10104 |
24230-24232 |
IN |
denotes |
of |
| T10105 |
24233-24238 |
JJ |
denotes |
minor |
| T10106 |
24249-24256 |
NNS |
denotes |
repeats |
| T10107 |
24239-24248 |
NN |
denotes |
satellite |
| T10108 |
24257-24259 |
IN |
denotes |
in |
| T10109 |
24260-24263 |
DT |
denotes |
the |
| T10110 |
24269-24279 |
NN |
denotes |
experiment |
| T10111 |
24264-24268 |
JJ |
denotes |
same |
| T10112 |
24280-24283 |
VBD |
denotes |
was |
| T10113 |
24284-24288 |
RBR |
denotes |
less |
| T10114 |
24298-24299 |
-LRB- |
denotes |
( |
| T10115 |
24306-24308 |
NN |
denotes |
7B |
| T10116 |
24299-24305 |
NN |
denotes |
Figure |
| T10117 |
24308-24309 |
-RRB- |
denotes |
) |
| T10118 |
24309-24311 |
, |
denotes |
, |
| T10119 |
24311-24318 |
VBG |
denotes |
showing |
| T10120 |
24319-24323 |
IN |
denotes |
that |
| T10121 |
24358-24365 |
VBZ |
denotes |
affects |
| T10122 |
24324-24328 |
NN |
denotes |
loss |
| T10123 |
24329-24331 |
IN |
denotes |
of |
| T10124 |
24332-24339 |
NN |
denotes |
p150CAF |
| T10125 |
24342-24350 |
NN |
denotes |
function |
| T10126 |
24339-24340 |
HYPH |
denotes |
- |
| T10127 |
24340-24341 |
CD |
denotes |
1 |
| T10128 |
24351-24357 |
RB |
denotes |
mainly |
| T10129 |
24366-24374 |
NN |
denotes |
H4K20me3 |
| T10130 |
24375-24377 |
IN |
denotes |
at |
| T10131 |
24378-24389 |
JJ |
denotes |
pericentric |
| T10132 |
24390-24405 |
NN |
denotes |
heterochromatin |
| T10133 |
24405-24406 |
. |
denotes |
. |
| T10134 |
24406-24625 |
sentence |
denotes |
Moreover, no significant difference in immunoprecipitation efficiency was detected at intracisternal A particle (IAP) elements (Figure 7B), which are noncentromeric repeated DNA elements also enriched in H4K20me3 [31]. |
| T10135 |
24407-24415 |
RB |
denotes |
Moreover |
| T10136 |
24481-24489 |
VBN |
denotes |
detected |
| T10137 |
24415-24417 |
, |
denotes |
, |
| T10138 |
24417-24419 |
DT |
denotes |
no |
| T10139 |
24432-24442 |
NN |
denotes |
difference |
| T10140 |
24420-24431 |
JJ |
denotes |
significant |
| T10141 |
24443-24445 |
IN |
denotes |
in |
| T10142 |
24446-24465 |
NN |
denotes |
immunoprecipitation |
| T10143 |
24466-24476 |
NN |
denotes |
efficiency |
| T10144 |
24477-24480 |
VBD |
denotes |
was |
| T10145 |
24490-24492 |
IN |
denotes |
at |
| T10146 |
24493-24507 |
JJ |
denotes |
intracisternal |
| T10147 |
24510-24518 |
NN |
denotes |
particle |
| T10148 |
24508-24509 |
NN |
denotes |
A |
| T10149 |
24525-24533 |
NNS |
denotes |
elements |
| T10150 |
24519-24520 |
-LRB- |
denotes |
( |
| T10151 |
24520-24523 |
NN |
denotes |
IAP |
| T10152 |
24523-24524 |
-RRB- |
denotes |
) |
| T10153 |
24534-24535 |
-LRB- |
denotes |
( |
| T10154 |
24542-24544 |
NN |
denotes |
7B |
| T10155 |
24535-24541 |
NN |
denotes |
Figure |
| T10156 |
24544-24545 |
-RRB- |
denotes |
) |
| T10157 |
24545-24547 |
, |
denotes |
, |
| T10158 |
24547-24552 |
WDT |
denotes |
which |
| T10159 |
24553-24556 |
VBP |
denotes |
are |
| T10160 |
24557-24571 |
JJ |
denotes |
noncentromeric |
| T10161 |
24585-24593 |
NNS |
denotes |
elements |
| T10162 |
24572-24580 |
VBN |
denotes |
repeated |
| T10163 |
24581-24584 |
NN |
denotes |
DNA |
| T10164 |
24594-24598 |
RB |
denotes |
also |
| T10165 |
24599-24607 |
VBN |
denotes |
enriched |
| T10166 |
24608-24610 |
IN |
denotes |
in |
| T10167 |
24611-24619 |
NN |
denotes |
H4K20me3 |
| T10168 |
24620-24621 |
-LRB- |
denotes |
[ |
| T10169 |
24621-24623 |
CD |
denotes |
31 |
| T10170 |
24623-24624 |
-RRB- |
denotes |
] |
| T10171 |
24624-24625 |
. |
denotes |
. |
| T10172 |
24625-24766 |
sentence |
denotes |
This result shows that p150CAF-1 contributes to normal levels of H4K20me3 at pericentric heterochromatin, but not necessarily at other loci. |
| T10173 |
24626-24630 |
DT |
denotes |
This |
| T10174 |
24631-24637 |
NN |
denotes |
result |
| T10175 |
24638-24643 |
VBZ |
denotes |
shows |
| T10176 |
24644-24648 |
IN |
denotes |
that |
| T10177 |
24659-24670 |
VBZ |
denotes |
contributes |
| T10178 |
24649-24656 |
NN |
denotes |
p150CAF |
| T10179 |
24656-24657 |
HYPH |
denotes |
- |
| T10180 |
24657-24658 |
CD |
denotes |
1 |
| T10181 |
24671-24673 |
IN |
denotes |
to |
| T10182 |
24674-24680 |
JJ |
denotes |
normal |
| T10183 |
24681-24687 |
NNS |
denotes |
levels |
| T10184 |
24688-24690 |
IN |
denotes |
of |
| T10185 |
24691-24699 |
NN |
denotes |
H4K20me3 |
| T10186 |
24700-24702 |
IN |
denotes |
at |
| T10187 |
24703-24714 |
JJ |
denotes |
pericentric |
| T10188 |
24715-24730 |
NN |
denotes |
heterochromatin |
| T10189 |
24730-24732 |
, |
denotes |
, |
| T10190 |
24732-24735 |
CC |
denotes |
but |
| T10191 |
24736-24739 |
RB |
denotes |
not |
| T10192 |
24740-24751 |
RB |
denotes |
necessarily |
| T10193 |
24752-24754 |
IN |
denotes |
at |
| T10194 |
24755-24760 |
JJ |
denotes |
other |
| T10195 |
24761-24765 |
NNS |
denotes |
loci |
| T10196 |
24765-24766 |
. |
denotes |
. |
| T10197 |
24766-24908 |
sentence |
denotes |
The H3K9me3 mark [32] was also significantly reduced in p150CAF-1-depleted cells, though to a lesser extent than H4K20me3 (Figure 7A and 7B). |
| T10198 |
24767-24770 |
DT |
denotes |
The |
| T10199 |
24779-24783 |
NN |
denotes |
mark |
| T10200 |
24771-24778 |
NN |
denotes |
H3K9me3 |
| T10201 |
24812-24819 |
VBN |
denotes |
reduced |
| T10202 |
24784-24785 |
-LRB- |
denotes |
[ |
| T10203 |
24785-24787 |
CD |
denotes |
32 |
| T10204 |
24787-24788 |
-RRB- |
denotes |
] |
| T10205 |
24789-24792 |
VBD |
denotes |
was |
| T10206 |
24793-24797 |
RB |
denotes |
also |
| T10207 |
24798-24811 |
RB |
denotes |
significantly |
| T10208 |
24820-24822 |
IN |
denotes |
in |
| T10209 |
24823-24830 |
NN |
denotes |
p150CAF |
| T10210 |
24833-24841 |
VBN |
denotes |
depleted |
| T10211 |
24830-24831 |
HYPH |
denotes |
- |
| T10212 |
24831-24832 |
CD |
denotes |
1 |
| T10213 |
24832-24833 |
HYPH |
denotes |
- |
| T10214 |
24842-24847 |
NNS |
denotes |
cells |
| T10215 |
24847-24849 |
, |
denotes |
, |
| T10216 |
24849-24855 |
IN |
denotes |
though |
| T10217 |
24856-24858 |
IN |
denotes |
to |
| T10218 |
24859-24860 |
DT |
denotes |
a |
| T10219 |
24868-24874 |
NN |
denotes |
extent |
| T10220 |
24861-24867 |
JJR |
denotes |
lesser |
| T10221 |
24875-24879 |
IN |
denotes |
than |
| T10222 |
24880-24888 |
NN |
denotes |
H4K20me3 |
| T10223 |
24889-24890 |
-LRB- |
denotes |
( |
| T10224 |
24897-24899 |
NN |
denotes |
7A |
| T10225 |
24890-24896 |
NN |
denotes |
Figure |
| T10226 |
24900-24903 |
CC |
denotes |
and |
| T10227 |
24904-24906 |
NN |
denotes |
7B |
| T10228 |
24906-24907 |
-RRB- |
denotes |
) |
| T10229 |
24907-24908 |
. |
denotes |
. |
| T10230 |
24908-26806 |
sentence |
denotes |
Figure 6 DNA CpG Methylation at Pericentric Heterochromatin Is Not Altered in p150CAF-1-Depleted ES Cells
Total DNA was isolated from cells transfected with a control or the p150CAF-1 siRNA vector and digested with MaeII, whose recognition sequence is present in major satellite repeats. Digested DNA was run onto an agarose gel and analyzed by Southern blotting using the pSAT major satellite probe [47].
Figure 7 Alteration of Epigenetic Marking at Pericentric Heterochromatin in p150CAF-1-Depleted Cells
(A) p150CAF-1 depletion leads to reduced H4K20me3 and H3K9me3 at pericentric heterochromatin. Enrichment of histone marks at major satellite repeats was determined by ChIP from control (cont) and p150CAF-1 (p150) siRNA-expressing ES cells. DNA prepared from the input and the antibody-bound fraction were run onto an agarose gel and analyzed by Southern blot with the pSAT major satellite repeat probe [47].
(B) Hybridization signals were quantified using an Instant Imager. After autoradiography, the membrane was stripped and rehybridized with a minor satellite probe [49]. After quantification, the membrane was stripped and rehybridized with an IAP LTR probe [50]. Results are presented as the amount of DNA immunoprecipitated from p150CAF-1-depleted ES cells divided by the DNA obtained from control cells. The figure shows the mean value and standard deviation of three independent ChIP experiments.
(C and D) H3K9me3 and H4K20me3 fluorescence patterns are severely altered in p150CAF-1-depleted ES cells. Immunodetection of H3K9me3 (C, green), H4K20me3 (D, green), and HP1α (red) in control and p150CAF-1 siRNA-expressing ES cells. Merging of HP1α with H3K9me3 (C) and H4K20me3 (D) is shown in yellow. Scale bars represent 10 μm. In wild-type cells, most of H4K20me3 and H3K9me3 signals are present at the level of DAPI-dense domains when visualized by IF [29] (Figures 7C and 7D). |
| T10231 |
26655-26657 |
IN |
denotes |
In |
| T10232 |
26712-26715 |
VBP |
denotes |
are |
| T10233 |
26658-26662 |
JJ |
denotes |
wild |
| T10234 |
26663-26667 |
NN |
denotes |
type |
| T10235 |
26662-26663 |
HYPH |
denotes |
- |
| T10236 |
26668-26673 |
NNS |
denotes |
cells |
| T10237 |
26673-26675 |
, |
denotes |
, |
| T10238 |
26675-26679 |
JJS |
denotes |
most |
| T10239 |
26680-26682 |
IN |
denotes |
of |
| T10240 |
26683-26691 |
NN |
denotes |
H4K20me3 |
| T10241 |
26704-26711 |
NNS |
denotes |
signals |
| T10242 |
26692-26695 |
CC |
denotes |
and |
| T10243 |
26696-26703 |
NN |
denotes |
H3K9me3 |
| T10244 |
26716-26723 |
JJ |
denotes |
present |
| T10245 |
26724-26726 |
IN |
denotes |
at |
| T10246 |
26727-26730 |
DT |
denotes |
the |
| T10247 |
26731-26736 |
NN |
denotes |
level |
| T10248 |
26737-26739 |
IN |
denotes |
of |
| T10249 |
26740-26744 |
NN |
denotes |
DAPI |
| T10250 |
26745-26750 |
JJ |
denotes |
dense |
| T10251 |
26744-26745 |
HYPH |
denotes |
- |
| T10252 |
26751-26758 |
NNS |
denotes |
domains |
| T10253 |
26759-26763 |
WRB |
denotes |
when |
| T10254 |
26764-26774 |
VBN |
denotes |
visualized |
| T10255 |
26775-26777 |
IN |
denotes |
by |
| T10256 |
26778-26780 |
NN |
denotes |
IF |
| T10257 |
26781-26782 |
-LRB- |
denotes |
[ |
| T10258 |
26782-26784 |
CD |
denotes |
29 |
| T10259 |
26784-26785 |
-RRB- |
denotes |
] |
| T10260 |
26786-26787 |
-LRB- |
denotes |
( |
| T10261 |
26795-26797 |
NN |
denotes |
7C |
| T10262 |
26787-26794 |
NNS |
denotes |
Figures |
| T10263 |
26798-26801 |
CC |
denotes |
and |
| T10264 |
26802-26804 |
NN |
denotes |
7D |
| T10265 |
26804-26805 |
-RRB- |
denotes |
) |
| T10266 |
26805-26806 |
. |
denotes |
. |
| T10267 |
26806-26924 |
sentence |
denotes |
H3K9me3 was severely perturbed in p150CAF-1-depleted cells, displaying a diffuse pattern similar to HP1α (Figure 7C). |
| T10268 |
26807-26814 |
NN |
denotes |
H3K9me3 |
| T10269 |
26828-26837 |
VBN |
denotes |
perturbed |
| T10270 |
26815-26818 |
VBD |
denotes |
was |
| T10271 |
26819-26827 |
RB |
denotes |
severely |
| T10272 |
26838-26840 |
IN |
denotes |
in |
| T10273 |
26841-26848 |
NN |
denotes |
p150CAF |
| T10274 |
26851-26859 |
VBN |
denotes |
depleted |
| T10275 |
26848-26849 |
HYPH |
denotes |
- |
| T10276 |
26849-26850 |
CD |
denotes |
1 |
| T10277 |
26850-26851 |
HYPH |
denotes |
- |
| T10278 |
26860-26865 |
NNS |
denotes |
cells |
| T10279 |
26865-26867 |
, |
denotes |
, |
| T10280 |
26867-26877 |
VBG |
denotes |
displaying |
| T10281 |
26878-26879 |
DT |
denotes |
a |
| T10282 |
26888-26895 |
NN |
denotes |
pattern |
| T10283 |
26880-26887 |
JJ |
denotes |
diffuse |
| T10284 |
26896-26903 |
JJ |
denotes |
similar |
| T10285 |
26904-26906 |
IN |
denotes |
to |
| T10286 |
26907-26911 |
NN |
denotes |
HP1α |
| T10287 |
26912-26913 |
-LRB- |
denotes |
( |
| T10288 |
26920-26922 |
NN |
denotes |
7C |
| T10289 |
26913-26919 |
NN |
denotes |
Figure |
| T10290 |
26922-26923 |
-RRB- |
denotes |
) |
| T10291 |
26923-26924 |
. |
denotes |
. |
| T10292 |
26924-27092 |
sentence |
denotes |
The H4K20me3 pattern was even more severely altered, showing both a loss of the typical dots revealed in control cells and a reduction in signal intensity (Figure 7D). |
| T10293 |
26925-26928 |
DT |
denotes |
The |
| T10294 |
26938-26945 |
NN |
denotes |
pattern |
| T10295 |
26929-26937 |
NN |
denotes |
H4K20me3 |
| T10296 |
26969-26976 |
VBN |
denotes |
altered |
| T10297 |
26946-26949 |
VBD |
denotes |
was |
| T10298 |
26950-26954 |
RB |
denotes |
even |
| T10299 |
26955-26959 |
RBR |
denotes |
more |
| T10300 |
26960-26968 |
RB |
denotes |
severely |
| T10301 |
26976-26978 |
, |
denotes |
, |
| T10302 |
26978-26985 |
VBG |
denotes |
showing |
| T10303 |
26986-26990 |
CC |
denotes |
both |
| T10304 |
26993-26997 |
NN |
denotes |
loss |
| T10305 |
26991-26992 |
DT |
denotes |
a |
| T10306 |
26998-27000 |
IN |
denotes |
of |
| T10307 |
27001-27004 |
DT |
denotes |
the |
| T10308 |
27013-27017 |
NNS |
denotes |
dots |
| T10309 |
27005-27012 |
JJ |
denotes |
typical |
| T10310 |
27018-27026 |
VBN |
denotes |
revealed |
| T10311 |
27027-27029 |
IN |
denotes |
in |
| T10312 |
27030-27037 |
NN |
denotes |
control |
| T10313 |
27038-27043 |
NNS |
denotes |
cells |
| T10314 |
27044-27047 |
CC |
denotes |
and |
| T10315 |
27048-27049 |
DT |
denotes |
a |
| T10316 |
27050-27059 |
NN |
denotes |
reduction |
| T10317 |
27060-27062 |
IN |
denotes |
in |
| T10318 |
27063-27069 |
NN |
denotes |
signal |
| T10319 |
27070-27079 |
NN |
denotes |
intensity |
| T10320 |
27080-27081 |
-LRB- |
denotes |
( |
| T10321 |
27088-27090 |
NN |
denotes |
7D |
| T10322 |
27081-27087 |
NN |
denotes |
Figure |
| T10323 |
27090-27091 |
-RRB- |
denotes |
) |
| T10324 |
27091-27092 |
. |
denotes |
. |
| T10325 |
27092-27218 |
sentence |
denotes |
Consistent with our ChIP experiments, residual H4K20me3 epitopes were detected at the level of relocated DAPI-dense material. |
| T10326 |
27093-27103 |
JJ |
denotes |
Consistent |
| T10327 |
27163-27171 |
VBN |
denotes |
detected |
| T10328 |
27104-27108 |
IN |
denotes |
with |
| T10329 |
27109-27112 |
PRP$ |
denotes |
our |
| T10330 |
27118-27129 |
NNS |
denotes |
experiments |
| T10331 |
27113-27117 |
NN |
denotes |
ChIP |
| T10332 |
27129-27131 |
, |
denotes |
, |
| T10333 |
27131-27139 |
JJ |
denotes |
residual |
| T10334 |
27149-27157 |
NNS |
denotes |
epitopes |
| T10335 |
27140-27148 |
NN |
denotes |
H4K20me3 |
| T10336 |
27158-27162 |
VBD |
denotes |
were |
| T10337 |
27172-27174 |
IN |
denotes |
at |
| T10338 |
27175-27178 |
DT |
denotes |
the |
| T10339 |
27179-27184 |
NN |
denotes |
level |
| T10340 |
27185-27187 |
IN |
denotes |
of |
| T10341 |
27188-27197 |
VBN |
denotes |
relocated |
| T10342 |
27209-27217 |
NN |
denotes |
material |
| T10343 |
27198-27202 |
NN |
denotes |
DAPI |
| T10344 |
27203-27208 |
JJ |
denotes |
dense |
| T10345 |
27202-27203 |
HYPH |
denotes |
- |
| T10346 |
27217-27218 |
. |
denotes |
. |
| T10347 |
27218-27395 |
sentence |
denotes |
Altogether, our results show that depletion of CAF-1 in ES cells leads to a simultaneous disruption of heterochromatin 3-D organization and an alteration in epigenetic marking. |
| T10348 |
27219-27229 |
RB |
denotes |
Altogether |
| T10349 |
27243-27247 |
VBP |
denotes |
show |
| T10350 |
27229-27231 |
, |
denotes |
, |
| T10351 |
27231-27234 |
PRP$ |
denotes |
our |
| T10352 |
27235-27242 |
NNS |
denotes |
results |
| T10353 |
27248-27252 |
IN |
denotes |
that |
| T10354 |
27284-27289 |
VBZ |
denotes |
leads |
| T10355 |
27253-27262 |
NN |
denotes |
depletion |
| T10356 |
27263-27265 |
IN |
denotes |
of |
| T10357 |
27266-27269 |
NN |
denotes |
CAF |
| T10358 |
27269-27270 |
HYPH |
denotes |
- |
| T10359 |
27270-27271 |
CD |
denotes |
1 |
| T10360 |
27272-27274 |
IN |
denotes |
in |
| T10361 |
27275-27277 |
NN |
denotes |
ES |
| T10362 |
27278-27283 |
NNS |
denotes |
cells |
| T10363 |
27290-27292 |
IN |
denotes |
to |
| T10364 |
27293-27294 |
DT |
denotes |
a |
| T10365 |
27308-27318 |
NN |
denotes |
disruption |
| T10366 |
27295-27307 |
JJ |
denotes |
simultaneous |
| T10367 |
27319-27321 |
IN |
denotes |
of |
| T10368 |
27322-27337 |
NN |
denotes |
heterochromatin |
| T10369 |
27342-27354 |
NN |
denotes |
organization |
| T10370 |
27338-27339 |
CD |
denotes |
3 |
| T10371 |
27340-27341 |
NN |
denotes |
D |
| T10372 |
27339-27340 |
HYPH |
denotes |
- |
| T10373 |
27355-27358 |
CC |
denotes |
and |
| T10374 |
27359-27361 |
DT |
denotes |
an |
| T10375 |
27362-27372 |
NN |
denotes |
alteration |
| T10376 |
27373-27375 |
IN |
denotes |
in |
| T10377 |
27376-27386 |
JJ |
denotes |
epigenetic |
| T10378 |
27387-27394 |
NN |
denotes |
marking |
| T10379 |
27394-27395 |
. |
denotes |
. |
| T13122 |
27408-27412 |
RB |
denotes |
Here |
| T13123 |
27417-27424 |
VBP |
denotes |
provide |
| T13124 |
27412-27414 |
, |
denotes |
, |
| T13125 |
27414-27416 |
PRP |
denotes |
we |
| T13126 |
27425-27433 |
NN |
denotes |
evidence |
| T13127 |
27434-27438 |
IN |
denotes |
that |
| T13128 |
27449-27452 |
VBZ |
denotes |
has |
| T13129 |
27439-27446 |
NN |
denotes |
p150CAF |
| T13130 |
27446-27447 |
HYPH |
denotes |
- |
| T13131 |
27447-27448 |
CD |
denotes |
1 |
| T13132 |
27453-27454 |
DT |
denotes |
a |
| T13133 |
27463-27471 |
NN |
denotes |
function |
| T13134 |
27455-27462 |
JJ |
denotes |
crucial |
| T13135 |
27472-27478 |
IN |
denotes |
during |
| T13136 |
27479-27484 |
NN |
denotes |
mouse |
| T13137 |
27491-27504 |
NN |
denotes |
embryogenesis |
| T13138 |
27485-27490 |
JJ |
denotes |
early |
| T13139 |
27505-27508 |
CC |
denotes |
and |
| T13140 |
27509-27511 |
IN |
denotes |
in |
| T13141 |
27512-27514 |
NN |
denotes |
ES |
| T13142 |
27515-27520 |
NNS |
denotes |
cells |
| T13143 |
27520-27521 |
. |
denotes |
. |
| T13144 |
27521-27624 |
sentence |
denotes |
Previous studies showed that CAF-1 is essential for the progression of DNA replication in vertebrates. |
| T13145 |
27522-27530 |
JJ |
denotes |
Previous |
| T13146 |
27531-27538 |
NNS |
denotes |
studies |
| T13147 |
27539-27545 |
VBD |
denotes |
showed |
| T13148 |
27546-27550 |
IN |
denotes |
that |
| T13149 |
27557-27559 |
VBZ |
denotes |
is |
| T13150 |
27551-27554 |
NN |
denotes |
CAF |
| T13151 |
27554-27555 |
HYPH |
denotes |
- |
| T13152 |
27555-27556 |
CD |
denotes |
1 |
| T13153 |
27560-27569 |
JJ |
denotes |
essential |
| T13154 |
27570-27573 |
IN |
denotes |
for |
| T13155 |
27574-27577 |
DT |
denotes |
the |
| T13156 |
27578-27589 |
NN |
denotes |
progression |
| T13157 |
27590-27592 |
IN |
denotes |
of |
| T13158 |
27593-27596 |
NN |
denotes |
DNA |
| T13159 |
27597-27608 |
NN |
denotes |
replication |
| T13160 |
27609-27611 |
IN |
denotes |
in |
| T13161 |
27612-27623 |
NNS |
denotes |
vertebrates |
| T13162 |
27623-27624 |
. |
denotes |
. |
| T13163 |
27624-27745 |
sentence |
denotes |
In Xenopus laevis, p150CAF-1 function is required for the rapid cell divisions that occur during early development [33]. |
| T13164 |
27625-27627 |
IN |
denotes |
In |
| T13165 |
27666-27674 |
VBN |
denotes |
required |
| T13166 |
27628-27635 |
NNP |
denotes |
Xenopus |
| T13167 |
27636-27642 |
NNP |
denotes |
laevis |
| T13168 |
27642-27644 |
, |
denotes |
, |
| T13169 |
27644-27651 |
NN |
denotes |
p150CAF |
| T13170 |
27654-27662 |
NN |
denotes |
function |
| T13171 |
27651-27652 |
HYPH |
denotes |
- |
| T13172 |
27652-27653 |
CD |
denotes |
1 |
| T13173 |
27663-27665 |
VBZ |
denotes |
is |
| T13174 |
27675-27678 |
IN |
denotes |
for |
| T13175 |
27679-27682 |
DT |
denotes |
the |
| T13176 |
27694-27703 |
NNS |
denotes |
divisions |
| T13177 |
27683-27688 |
JJ |
denotes |
rapid |
| T13178 |
27689-27693 |
NN |
denotes |
cell |
| T13179 |
27704-27708 |
WDT |
denotes |
that |
| T13180 |
27709-27714 |
VBP |
denotes |
occur |
| T13181 |
27715-27721 |
IN |
denotes |
during |
| T13182 |
27722-27727 |
JJ |
denotes |
early |
| T13183 |
27728-27739 |
NN |
denotes |
development |
| T13184 |
27740-27741 |
-LRB- |
denotes |
[ |
| T13185 |
27741-27743 |
CD |
denotes |
33 |
| T13186 |
27743-27744 |
-RRB- |
denotes |
] |
| T13187 |
27744-27745 |
. |
denotes |
. |
| T13188 |
27745-27853 |
sentence |
denotes |
Similarly, CAF-1 is essential in mammalian cell lines for the progression of DNA replication [16,23,24,34]. |
| T13189 |
27746-27755 |
RB |
denotes |
Similarly |
| T13190 |
27763-27765 |
VBZ |
denotes |
is |
| T13191 |
27755-27757 |
, |
denotes |
, |
| T13192 |
27757-27760 |
NN |
denotes |
CAF |
| T13193 |
27760-27761 |
HYPH |
denotes |
- |
| T13194 |
27761-27762 |
CD |
denotes |
1 |
| T13195 |
27766-27775 |
JJ |
denotes |
essential |
| T13196 |
27776-27778 |
IN |
denotes |
in |
| T13197 |
27779-27788 |
JJ |
denotes |
mammalian |
| T13198 |
27794-27799 |
NNS |
denotes |
lines |
| T13199 |
27789-27793 |
NN |
denotes |
cell |
| T13200 |
27800-27803 |
IN |
denotes |
for |
| T13201 |
27804-27807 |
DT |
denotes |
the |
| T13202 |
27808-27819 |
NN |
denotes |
progression |
| T13203 |
27820-27822 |
IN |
denotes |
of |
| T13204 |
27823-27826 |
NN |
denotes |
DNA |
| T13205 |
27827-27838 |
NN |
denotes |
replication |
| T13206 |
27839-27840 |
-LRB- |
denotes |
[ |
| T13207 |
27849-27851 |
CD |
denotes |
34 |
| T13208 |
27840-27842 |
CD |
denotes |
16 |
| T13209 |
27842-27843 |
, |
denotes |
, |
| T13210 |
27843-27845 |
CD |
denotes |
23 |
| T13211 |
27845-27846 |
, |
denotes |
, |
| T13212 |
27846-27848 |
CD |
denotes |
24 |
| T13213 |
27848-27849 |
, |
denotes |
, |
| T13214 |
27851-27852 |
-RRB- |
denotes |
] |
| T13215 |
27852-27853 |
. |
denotes |
. |
| T13216 |
27853-27987 |
sentence |
denotes |
Our findings reveal a role for CAF-1 in the nuclear organization of heterochromatin domains during early development and in ES cells. |
| T13217 |
27854-27857 |
PRP$ |
denotes |
Our |
| T13218 |
27858-27866 |
NNS |
denotes |
findings |
| T13219 |
27867-27873 |
VBP |
denotes |
reveal |
| T13220 |
27874-27875 |
DT |
denotes |
a |
| T13221 |
27876-27880 |
NN |
denotes |
role |
| T13222 |
27881-27884 |
IN |
denotes |
for |
| T13223 |
27885-27888 |
NN |
denotes |
CAF |
| T13224 |
27888-27889 |
HYPH |
denotes |
- |
| T13225 |
27889-27890 |
CD |
denotes |
1 |
| T13226 |
27891-27893 |
IN |
denotes |
in |
| T13227 |
27894-27897 |
DT |
denotes |
the |
| T13228 |
27906-27918 |
NN |
denotes |
organization |
| T13229 |
27898-27905 |
JJ |
denotes |
nuclear |
| T13230 |
27919-27921 |
IN |
denotes |
of |
| T13231 |
27922-27937 |
NN |
denotes |
heterochromatin |
| T13232 |
27938-27945 |
NNS |
denotes |
domains |
| T13233 |
27946-27952 |
IN |
denotes |
during |
| T13234 |
27953-27958 |
JJ |
denotes |
early |
| T13235 |
27959-27970 |
NN |
denotes |
development |
| T13236 |
27971-27974 |
CC |
denotes |
and |
| T13237 |
27975-27977 |
IN |
denotes |
in |
| T13238 |
27978-27980 |
NN |
denotes |
ES |
| T13239 |
27981-27986 |
NNS |
denotes |
cells |
| T13240 |
27986-27987 |
. |
denotes |
. |
| T13241 |
27987-28196 |
sentence |
denotes |
We show that in p150CAF-1-depleted ES cells, while DNA replication initially persists without significant perturbation in nucleosomal organization, severe heterochromatin organization defects can be observed. |
| T13242 |
27988-27990 |
PRP |
denotes |
We |
| T13243 |
27991-27995 |
VBP |
denotes |
show |
| T13244 |
27996-28000 |
IN |
denotes |
that |
| T13245 |
28187-28195 |
VBN |
denotes |
observed |
| T13246 |
28001-28003 |
IN |
denotes |
in |
| T13247 |
28004-28011 |
NN |
denotes |
p150CAF |
| T13248 |
28014-28022 |
VBN |
denotes |
depleted |
| T13249 |
28011-28012 |
HYPH |
denotes |
- |
| T13250 |
28012-28013 |
CD |
denotes |
1 |
| T13251 |
28013-28014 |
HYPH |
denotes |
- |
| T13252 |
28026-28031 |
NNS |
denotes |
cells |
| T13253 |
28023-28025 |
NN |
denotes |
ES |
| T13254 |
28031-28033 |
, |
denotes |
, |
| T13255 |
28033-28038 |
IN |
denotes |
while |
| T13256 |
28065-28073 |
VBZ |
denotes |
persists |
| T13257 |
28039-28042 |
NN |
denotes |
DNA |
| T13258 |
28043-28054 |
NN |
denotes |
replication |
| T13259 |
28055-28064 |
RB |
denotes |
initially |
| T13260 |
28074-28081 |
IN |
denotes |
without |
| T13261 |
28082-28093 |
JJ |
denotes |
significant |
| T13262 |
28094-28106 |
NN |
denotes |
perturbation |
| T13263 |
28107-28109 |
IN |
denotes |
in |
| T13264 |
28110-28121 |
JJ |
denotes |
nucleosomal |
| T13265 |
28122-28134 |
NN |
denotes |
organization |
| T13266 |
28134-28136 |
, |
denotes |
, |
| T13267 |
28136-28142 |
JJ |
denotes |
severe |
| T13268 |
28172-28179 |
NNS |
denotes |
defects |
| T13269 |
28143-28158 |
NN |
denotes |
heterochromatin |
| T13270 |
28159-28171 |
NN |
denotes |
organization |
| T13271 |
28180-28183 |
MD |
denotes |
can |
| T13272 |
28184-28186 |
VB |
denotes |
be |
| T13273 |
28195-28196 |
. |
denotes |
. |
| T13274 |
28196-28319 |
sentence |
denotes |
Loss of p150CAF-1 did not affect PML bodies in ES cell nuclei, showing that nuclear architecture is not generally altered. |
| T13275 |
28197-28201 |
NN |
denotes |
Loss |
| T13276 |
28223-28229 |
VB |
denotes |
affect |
| T13277 |
28202-28204 |
IN |
denotes |
of |
| T13278 |
28205-28212 |
NN |
denotes |
p150CAF |
| T13279 |
28212-28213 |
HYPH |
denotes |
- |
| T13280 |
28213-28214 |
CD |
denotes |
1 |
| T13281 |
28215-28218 |
VBD |
denotes |
did |
| T13282 |
28219-28222 |
RB |
denotes |
not |
| T13283 |
28230-28233 |
NN |
denotes |
PML |
| T13284 |
28234-28240 |
NNS |
denotes |
bodies |
| T13285 |
28241-28243 |
IN |
denotes |
in |
| T13286 |
28244-28246 |
NN |
denotes |
ES |
| T13287 |
28252-28258 |
NNS |
denotes |
nuclei |
| T13288 |
28247-28251 |
NN |
denotes |
cell |
| T13289 |
28258-28260 |
, |
denotes |
, |
| T13290 |
28260-28267 |
VBG |
denotes |
showing |
| T13291 |
28268-28272 |
IN |
denotes |
that |
| T13292 |
28311-28318 |
VBN |
denotes |
altered |
| T13293 |
28273-28280 |
JJ |
denotes |
nuclear |
| T13294 |
28281-28293 |
NN |
denotes |
architecture |
| T13295 |
28294-28296 |
VBZ |
denotes |
is |
| T13296 |
28297-28300 |
RB |
denotes |
not |
| T13297 |
28301-28310 |
RB |
denotes |
generally |
| T13298 |
28318-28319 |
. |
denotes |
. |
| T13299 |
28319-28409 |
sentence |
denotes |
Ultimately, p150CAF-1 depletion results in the arrest of ES cell division and cell death. |
| T13300 |
28320-28330 |
RB |
denotes |
Ultimately |
| T13301 |
28352-28359 |
VBZ |
denotes |
results |
| T13302 |
28330-28332 |
, |
denotes |
, |
| T13303 |
28332-28339 |
NN |
denotes |
p150CAF |
| T13304 |
28342-28351 |
NN |
denotes |
depletion |
| T13305 |
28339-28340 |
HYPH |
denotes |
- |
| T13306 |
28340-28341 |
CD |
denotes |
1 |
| T13307 |
28360-28362 |
IN |
denotes |
in |
| T13308 |
28363-28366 |
DT |
denotes |
the |
| T13309 |
28367-28373 |
NN |
denotes |
arrest |
| T13310 |
28374-28376 |
IN |
denotes |
of |
| T13311 |
28377-28379 |
NN |
denotes |
ES |
| T13312 |
28380-28384 |
NN |
denotes |
cell |
| T13313 |
28385-28393 |
NN |
denotes |
division |
| T13314 |
28394-28397 |
CC |
denotes |
and |
| T13315 |
28398-28402 |
NN |
denotes |
cell |
| T13316 |
28403-28408 |
NN |
denotes |
death |
| T13317 |
28408-28409 |
. |
denotes |
. |
| T13318 |
28409-28591 |
sentence |
denotes |
Given the major defects observed in heterochromatin organization, it is tempting to speculate that these defects cause the developmental arrest in the embryos and death in ES cells. |
| T13319 |
28410-28415 |
VBN |
denotes |
Given |
| T13320 |
28479-28481 |
VBZ |
denotes |
is |
| T13321 |
28416-28419 |
DT |
denotes |
the |
| T13322 |
28426-28433 |
NNS |
denotes |
defects |
| T13323 |
28420-28425 |
JJ |
denotes |
major |
| T13324 |
28434-28442 |
VBN |
denotes |
observed |
| T13325 |
28443-28445 |
IN |
denotes |
in |
| T13326 |
28446-28461 |
NN |
denotes |
heterochromatin |
| T13327 |
28462-28474 |
NN |
denotes |
organization |
| T13328 |
28474-28476 |
, |
denotes |
, |
| T13329 |
28476-28478 |
PRP |
denotes |
it |
| T13330 |
28482-28490 |
VBG |
denotes |
tempting |
| T13331 |
28491-28493 |
TO |
denotes |
to |
| T13332 |
28494-28503 |
VB |
denotes |
speculate |
| T13333 |
28504-28508 |
IN |
denotes |
that |
| T13334 |
28523-28528 |
VBP |
denotes |
cause |
| T13335 |
28509-28514 |
DT |
denotes |
these |
| T13336 |
28515-28522 |
NNS |
denotes |
defects |
| T13337 |
28529-28532 |
DT |
denotes |
the |
| T13338 |
28547-28553 |
NN |
denotes |
arrest |
| T13339 |
28533-28546 |
JJ |
denotes |
developmental |
| T13340 |
28554-28556 |
IN |
denotes |
in |
| T13341 |
28557-28560 |
DT |
denotes |
the |
| T13342 |
28561-28568 |
NNS |
denotes |
embryos |
| T13343 |
28569-28572 |
CC |
denotes |
and |
| T13344 |
28573-28578 |
NN |
denotes |
death |
| T13345 |
28579-28581 |
IN |
denotes |
in |
| T13346 |
28582-28584 |
NN |
denotes |
ES |
| T13347 |
28585-28590 |
NNS |
denotes |
cells |
| T13348 |
28590-28591 |
. |
denotes |
. |
| T13349 |
28591-28740 |
sentence |
denotes |
The role of CAF-1 in the nuclear organization of heterochromatin includes spatial localization, condensation, and clustering of pericentric domains. |
| T13350 |
28592-28595 |
DT |
denotes |
The |
| T13351 |
28596-28600 |
NN |
denotes |
role |
| T13352 |
28657-28665 |
VBZ |
denotes |
includes |
| T13353 |
28601-28603 |
IN |
denotes |
of |
| T13354 |
28604-28607 |
NN |
denotes |
CAF |
| T13355 |
28607-28608 |
HYPH |
denotes |
- |
| T13356 |
28608-28609 |
CD |
denotes |
1 |
| T13357 |
28610-28612 |
IN |
denotes |
in |
| T13358 |
28613-28616 |
DT |
denotes |
the |
| T13359 |
28625-28637 |
NN |
denotes |
organization |
| T13360 |
28617-28624 |
JJ |
denotes |
nuclear |
| T13361 |
28638-28640 |
IN |
denotes |
of |
| T13362 |
28641-28656 |
NN |
denotes |
heterochromatin |
| T13363 |
28666-28673 |
JJ |
denotes |
spatial |
| T13364 |
28674-28686 |
NN |
denotes |
localization |
| T13365 |
28686-28688 |
, |
denotes |
, |
| T13366 |
28688-28700 |
NN |
denotes |
condensation |
| T13367 |
28700-28702 |
, |
denotes |
, |
| T13368 |
28702-28705 |
CC |
denotes |
and |
| T13369 |
28706-28716 |
NN |
denotes |
clustering |
| T13370 |
28717-28719 |
IN |
denotes |
of |
| T13371 |
28720-28731 |
JJ |
denotes |
pericentric |
| T13372 |
28732-28739 |
NNS |
denotes |
domains |
| T13373 |
28739-28740 |
. |
denotes |
. |
| T13374 |
28740-28902 |
sentence |
denotes |
This important function of CAF-1 was not revealed in primary MEFs, 3T3 cells, or human cell lines, suggesting that it is specific of pluripotent embryonic cells. |
| T13375 |
28741-28745 |
DT |
denotes |
This |
| T13376 |
28756-28764 |
NN |
denotes |
function |
| T13377 |
28746-28755 |
JJ |
denotes |
important |
| T13378 |
28782-28790 |
VBN |
denotes |
revealed |
| T13379 |
28765-28767 |
IN |
denotes |
of |
| T13380 |
28768-28771 |
NN |
denotes |
CAF |
| T13381 |
28771-28772 |
HYPH |
denotes |
- |
| T13382 |
28772-28773 |
CD |
denotes |
1 |
| T13383 |
28774-28777 |
VBD |
denotes |
was |
| T13384 |
28778-28781 |
RB |
denotes |
not |
| T13385 |
28791-28793 |
IN |
denotes |
in |
| T13386 |
28794-28801 |
JJ |
denotes |
primary |
| T13387 |
28802-28806 |
NNS |
denotes |
MEFs |
| T13388 |
28806-28808 |
, |
denotes |
, |
| T13389 |
28808-28811 |
NN |
denotes |
3T3 |
| T13390 |
28812-28817 |
NNS |
denotes |
cells |
| T13391 |
28817-28819 |
, |
denotes |
, |
| T13392 |
28819-28821 |
CC |
denotes |
or |
| T13393 |
28822-28827 |
JJ |
denotes |
human |
| T13394 |
28833-28838 |
NNS |
denotes |
lines |
| T13395 |
28828-28832 |
NN |
denotes |
cell |
| T13396 |
28838-28840 |
, |
denotes |
, |
| T13397 |
28840-28850 |
VBG |
denotes |
suggesting |
| T13398 |
28851-28855 |
IN |
denotes |
that |
| T13399 |
28859-28861 |
VBZ |
denotes |
is |
| T13400 |
28856-28858 |
PRP |
denotes |
it |
| T13401 |
28862-28870 |
JJ |
denotes |
specific |
| T13402 |
28871-28873 |
IN |
denotes |
of |
| T13403 |
28874-28885 |
JJ |
denotes |
pluripotent |
| T13404 |
28896-28901 |
NNS |
denotes |
cells |
| T13405 |
28886-28895 |
JJ |
denotes |
embryonic |
| T13406 |
28901-28902 |
. |
denotes |
. |
| T13407 |
28902-29124 |
sentence |
denotes |
Alternatively, early embryos and ES cells, whose genome is more plastic than somatic cells, might represent a particularly sensitive context in which the importance of CAF-1 in heterochromatin organization is exacerbated. |
| T13408 |
28903-28916 |
RB |
denotes |
Alternatively |
| T13409 |
29001-29010 |
VB |
denotes |
represent |
| T13410 |
28916-28918 |
, |
denotes |
, |
| T13411 |
28918-28923 |
JJ |
denotes |
early |
| T13412 |
28924-28931 |
NNS |
denotes |
embryos |
| T13413 |
28932-28935 |
CC |
denotes |
and |
| T13414 |
28936-28938 |
NN |
denotes |
ES |
| T13415 |
28939-28944 |
NNS |
denotes |
cells |
| T13416 |
28944-28946 |
, |
denotes |
, |
| T13417 |
28946-28951 |
WP$ |
denotes |
whose |
| T13418 |
28952-28958 |
NN |
denotes |
genome |
| T13419 |
28959-28961 |
VBZ |
denotes |
is |
| T13420 |
28962-28966 |
RBR |
denotes |
more |
| T13421 |
28967-28974 |
JJ |
denotes |
plastic |
| T13422 |
28975-28979 |
IN |
denotes |
than |
| T13423 |
28980-28987 |
JJ |
denotes |
somatic |
| T13424 |
28988-28993 |
NNS |
denotes |
cells |
| T13425 |
28993-28995 |
, |
denotes |
, |
| T13426 |
28995-29000 |
MD |
denotes |
might |
| T13427 |
29011-29012 |
DT |
denotes |
a |
| T13428 |
29036-29043 |
NN |
denotes |
context |
| T13429 |
29013-29025 |
RB |
denotes |
particularly |
| T13430 |
29026-29035 |
JJ |
denotes |
sensitive |
| T13431 |
29044-29046 |
IN |
denotes |
in |
| T13432 |
29112-29123 |
VBN |
denotes |
exacerbated |
| T13433 |
29047-29052 |
WDT |
denotes |
which |
| T13434 |
29053-29056 |
DT |
denotes |
the |
| T13435 |
29057-29067 |
NN |
denotes |
importance |
| T13436 |
29068-29070 |
IN |
denotes |
of |
| T13437 |
29071-29074 |
NN |
denotes |
CAF |
| T13438 |
29074-29075 |
HYPH |
denotes |
- |
| T13439 |
29075-29076 |
CD |
denotes |
1 |
| T13440 |
29077-29079 |
IN |
denotes |
in |
| T13441 |
29080-29095 |
NN |
denotes |
heterochromatin |
| T13442 |
29096-29108 |
NN |
denotes |
organization |
| T13443 |
29109-29111 |
VBZ |
denotes |
is |
| T13444 |
29123-29124 |
. |
denotes |
. |
| T13445 |
29124-29240 |
sentence |
denotes |
In ES cells, major architectural chromatin proteins are hyperdynamic and bind relatively loosely to chromatin [35]. |
| T13446 |
29125-29127 |
IN |
denotes |
In |
| T13447 |
29177-29180 |
VBP |
denotes |
are |
| T13448 |
29128-29130 |
NN |
denotes |
ES |
| T13449 |
29131-29136 |
NNS |
denotes |
cells |
| T13450 |
29136-29138 |
, |
denotes |
, |
| T13451 |
29138-29143 |
JJ |
denotes |
major |
| T13452 |
29168-29176 |
NN |
denotes |
proteins |
| T13453 |
29144-29157 |
JJ |
denotes |
architectural |
| T13454 |
29158-29167 |
NN |
denotes |
chromatin |
| T13455 |
29181-29193 |
JJ |
denotes |
hyperdynamic |
| T13456 |
29194-29197 |
CC |
denotes |
and |
| T13457 |
29198-29202 |
VBP |
denotes |
bind |
| T13458 |
29203-29213 |
RB |
denotes |
relatively |
| T13459 |
29214-29221 |
RB |
denotes |
loosely |
| T13460 |
29222-29224 |
IN |
denotes |
to |
| T13461 |
29225-29234 |
NN |
denotes |
chromatin |
| T13462 |
29235-29236 |
-LRB- |
denotes |
[ |
| T13463 |
29236-29238 |
CD |
denotes |
35 |
| T13464 |
29238-29239 |
-RRB- |
denotes |
] |
| T13465 |
29239-29240 |
. |
denotes |
. |
| T13466 |
29240-29359 |
sentence |
denotes |
In this cellular context, our findings show that proper heterochromatin nuclear architecture relies on CAF-1 function. |
| T13467 |
29241-29243 |
IN |
denotes |
In |
| T13468 |
29280-29284 |
VBP |
denotes |
show |
| T13469 |
29244-29248 |
DT |
denotes |
this |
| T13470 |
29258-29265 |
NN |
denotes |
context |
| T13471 |
29249-29257 |
JJ |
denotes |
cellular |
| T13472 |
29265-29267 |
, |
denotes |
, |
| T13473 |
29267-29270 |
PRP$ |
denotes |
our |
| T13474 |
29271-29279 |
NNS |
denotes |
findings |
| T13475 |
29285-29289 |
IN |
denotes |
that |
| T13476 |
29334-29340 |
VBZ |
denotes |
relies |
| T13477 |
29290-29296 |
JJ |
denotes |
proper |
| T13478 |
29321-29333 |
NN |
denotes |
architecture |
| T13479 |
29297-29312 |
NN |
denotes |
heterochromatin |
| T13480 |
29313-29320 |
JJ |
denotes |
nuclear |
| T13481 |
29341-29343 |
IN |
denotes |
on |
| T13482 |
29344-29347 |
NN |
denotes |
CAF |
| T13483 |
29350-29358 |
NN |
denotes |
function |
| T13484 |
29347-29348 |
HYPH |
denotes |
- |
| T13485 |
29348-29349 |
CD |
denotes |
1 |
| T13486 |
29358-29359 |
. |
denotes |
. |
| T13487 |
29359-29555 |
sentence |
denotes |
In contrast, in undifferentiated cells that are already lineage committed (such as MEFs) genome architecture might be more stable than in ES cells and thus cannot be disrupted by CAF-1 depletion. |
| T13488 |
29360-29362 |
IN |
denotes |
In |
| T13489 |
29475-29477 |
VB |
denotes |
be |
| T13490 |
29363-29371 |
NN |
denotes |
contrast |
| T13491 |
29371-29373 |
, |
denotes |
, |
| T13492 |
29373-29375 |
IN |
denotes |
in |
| T13493 |
29376-29392 |
JJ |
denotes |
undifferentiated |
| T13494 |
29393-29398 |
NNS |
denotes |
cells |
| T13495 |
29399-29403 |
WDT |
denotes |
that |
| T13496 |
29424-29433 |
VBN |
denotes |
committed |
| T13497 |
29404-29407 |
VBP |
denotes |
are |
| T13498 |
29408-29415 |
RB |
denotes |
already |
| T13499 |
29416-29423 |
NN |
denotes |
lineage |
| T13500 |
29434-29435 |
-LRB- |
denotes |
( |
| T13501 |
29435-29439 |
JJ |
denotes |
such |
| T13502 |
29440-29442 |
IN |
denotes |
as |
| T13503 |
29443-29447 |
NNS |
denotes |
MEFs |
| T13504 |
29447-29448 |
-RRB- |
denotes |
) |
| T13505 |
29449-29455 |
NN |
denotes |
genome |
| T13506 |
29456-29468 |
NN |
denotes |
architecture |
| T13507 |
29469-29474 |
MD |
denotes |
might |
| T13508 |
29478-29482 |
RBR |
denotes |
more |
| T13509 |
29483-29489 |
JJ |
denotes |
stable |
| T13510 |
29490-29494 |
IN |
denotes |
than |
| T13511 |
29495-29497 |
IN |
denotes |
in |
| T13512 |
29498-29500 |
NN |
denotes |
ES |
| T13513 |
29501-29506 |
NNS |
denotes |
cells |
| T13514 |
29507-29510 |
CC |
denotes |
and |
| T13515 |
29511-29515 |
RB |
denotes |
thus |
| T13516 |
29526-29535 |
VBN |
denotes |
disrupted |
| T13517 |
29516-29519 |
MD |
denotes |
can |
| T13518 |
29519-29522 |
RB |
denotes |
not |
| T13519 |
29523-29525 |
VB |
denotes |
be |
| T13520 |
29536-29538 |
IN |
denotes |
by |
| T13521 |
29539-29542 |
NN |
denotes |
CAF |
| T13522 |
29545-29554 |
NN |
denotes |
depletion |
| T13523 |
29542-29543 |
HYPH |
denotes |
- |
| T13524 |
29543-29544 |
CD |
denotes |
1 |
| T13525 |
29554-29555 |
. |
denotes |
. |
| T13526 |
29555-29666 |
sentence |
denotes |
This important function of CAF-1 in pluripotent embryonic cells could be partially conserved during evolution. |
| T13527 |
29556-29560 |
DT |
denotes |
This |
| T13528 |
29571-29579 |
NN |
denotes |
function |
| T13529 |
29561-29570 |
JJ |
denotes |
important |
| T13530 |
29639-29648 |
VBN |
denotes |
conserved |
| T13531 |
29580-29582 |
IN |
denotes |
of |
| T13532 |
29583-29586 |
NN |
denotes |
CAF |
| T13533 |
29586-29587 |
HYPH |
denotes |
- |
| T13534 |
29587-29588 |
CD |
denotes |
1 |
| T13535 |
29589-29591 |
IN |
denotes |
in |
| T13536 |
29592-29603 |
JJ |
denotes |
pluripotent |
| T13537 |
29614-29619 |
NNS |
denotes |
cells |
| T13538 |
29604-29613 |
JJ |
denotes |
embryonic |
| T13539 |
29620-29625 |
MD |
denotes |
could |
| T13540 |
29626-29628 |
VB |
denotes |
be |
| T13541 |
29629-29638 |
RB |
denotes |
partially |
| T13542 |
29649-29655 |
IN |
denotes |
during |
| T13543 |
29656-29665 |
NN |
denotes |
evolution |
| T13544 |
29665-29666 |
. |
denotes |
. |
| T13545 |
29666-29829 |
sentence |
denotes |
Indeed, in Arabidopsis thaliana, in which CAF-1 is not essential for viability [36], loss of CAF-1 is associated with a mild alteration in chromocenter size [37]. |
| T13546 |
29667-29673 |
RB |
denotes |
Indeed |
| T13547 |
29769-29779 |
VBN |
denotes |
associated |
| T13548 |
29673-29675 |
, |
denotes |
, |
| T13549 |
29675-29677 |
IN |
denotes |
in |
| T13550 |
29678-29689 |
NNP |
denotes |
Arabidopsis |
| T13551 |
29690-29698 |
NNP |
denotes |
thaliana |
| T13552 |
29698-29700 |
, |
denotes |
, |
| T13553 |
29700-29702 |
IN |
denotes |
in |
| T13554 |
29715-29717 |
VBZ |
denotes |
is |
| T13555 |
29703-29708 |
WDT |
denotes |
which |
| T13556 |
29709-29712 |
NN |
denotes |
CAF |
| T13557 |
29712-29713 |
HYPH |
denotes |
- |
| T13558 |
29713-29714 |
CD |
denotes |
1 |
| T13559 |
29718-29721 |
RB |
denotes |
not |
| T13560 |
29722-29731 |
JJ |
denotes |
essential |
| T13561 |
29732-29735 |
IN |
denotes |
for |
| T13562 |
29736-29745 |
NN |
denotes |
viability |
| T13563 |
29746-29747 |
-LRB- |
denotes |
[ |
| T13564 |
29747-29749 |
CD |
denotes |
36 |
| T13565 |
29749-29750 |
-RRB- |
denotes |
] |
| T13566 |
29750-29752 |
, |
denotes |
, |
| T13567 |
29752-29756 |
NN |
denotes |
loss |
| T13568 |
29757-29759 |
IN |
denotes |
of |
| T13569 |
29760-29763 |
NN |
denotes |
CAF |
| T13570 |
29763-29764 |
HYPH |
denotes |
- |
| T13571 |
29764-29765 |
CD |
denotes |
1 |
| T13572 |
29766-29768 |
VBZ |
denotes |
is |
| T13573 |
29780-29784 |
IN |
denotes |
with |
| T13574 |
29785-29786 |
DT |
denotes |
a |
| T13575 |
29792-29802 |
NN |
denotes |
alteration |
| T13576 |
29787-29791 |
JJ |
denotes |
mild |
| T13577 |
29803-29805 |
IN |
denotes |
in |
| T13578 |
29806-29818 |
NN |
denotes |
chromocenter |
| T13579 |
29819-29823 |
NN |
denotes |
size |
| T13580 |
29824-29825 |
-LRB- |
denotes |
[ |
| T13581 |
29825-29827 |
CD |
denotes |
37 |
| T13582 |
29827-29828 |
-RRB- |
denotes |
] |
| T13583 |
29828-29829 |
. |
denotes |
. |
| T13584 |
29829-29957 |
sentence |
denotes |
This phenotype is somehow reminiscent of loss of CAF-1-mediated defects in heterochromatin organization in early mouse embryos. |
| T13585 |
29830-29834 |
DT |
denotes |
This |
| T13586 |
29835-29844 |
NN |
denotes |
phenotype |
| T13587 |
29845-29847 |
VBZ |
denotes |
is |
| T13588 |
29848-29855 |
RB |
denotes |
somehow |
| T13589 |
29856-29867 |
JJ |
denotes |
reminiscent |
| T13590 |
29868-29870 |
IN |
denotes |
of |
| T13591 |
29871-29875 |
NN |
denotes |
loss |
| T13592 |
29876-29878 |
IN |
denotes |
of |
| T13593 |
29879-29882 |
NN |
denotes |
CAF |
| T13594 |
29885-29893 |
VBN |
denotes |
mediated |
| T13595 |
29882-29883 |
HYPH |
denotes |
- |
| T13596 |
29883-29884 |
CD |
denotes |
1 |
| T13597 |
29884-29885 |
HYPH |
denotes |
- |
| T13598 |
29894-29901 |
NNS |
denotes |
defects |
| T13599 |
29902-29904 |
IN |
denotes |
in |
| T13600 |
29905-29920 |
NN |
denotes |
heterochromatin |
| T13601 |
29921-29933 |
NN |
denotes |
organization |
| T13602 |
29934-29936 |
IN |
denotes |
in |
| T13603 |
29937-29942 |
JJ |
denotes |
early |
| T13604 |
29949-29956 |
NNS |
denotes |
embryos |
| T13605 |
29943-29948 |
NN |
denotes |
mouse |
| T13606 |
29956-29957 |
. |
denotes |
. |
| T13607 |
29957-30155 |
sentence |
denotes |
In mouse ES cells, we show that CAF-1 is also required for regular levels of H4K20me3 at pericentric repeats, but not at IAP elements, which are repeated sequences spread all over the mouse genome. |
| T13608 |
29958-29960 |
IN |
denotes |
In |
| T13609 |
29980-29984 |
VBP |
denotes |
show |
| T13610 |
29961-29966 |
NN |
denotes |
mouse |
| T13611 |
29970-29975 |
NNS |
denotes |
cells |
| T13612 |
29967-29969 |
NN |
denotes |
ES |
| T13613 |
29975-29977 |
, |
denotes |
, |
| T13614 |
29977-29979 |
PRP |
denotes |
we |
| T13615 |
29985-29989 |
IN |
denotes |
that |
| T13616 |
30004-30012 |
VBN |
denotes |
required |
| T13617 |
29990-29993 |
NN |
denotes |
CAF |
| T13618 |
29993-29994 |
HYPH |
denotes |
- |
| T13619 |
29994-29995 |
CD |
denotes |
1 |
| T13620 |
29996-29998 |
VBZ |
denotes |
is |
| T13621 |
29999-30003 |
RB |
denotes |
also |
| T13622 |
30013-30016 |
IN |
denotes |
for |
| T13623 |
30017-30024 |
JJ |
denotes |
regular |
| T13624 |
30025-30031 |
NNS |
denotes |
levels |
| T13625 |
30032-30034 |
IN |
denotes |
of |
| T13626 |
30035-30043 |
NN |
denotes |
H4K20me3 |
| T13627 |
30044-30046 |
IN |
denotes |
at |
| T13628 |
30047-30058 |
JJ |
denotes |
pericentric |
| T13629 |
30059-30066 |
NNS |
denotes |
repeats |
| T13630 |
30066-30068 |
, |
denotes |
, |
| T13631 |
30068-30071 |
CC |
denotes |
but |
| T13632 |
30072-30075 |
RB |
denotes |
not |
| T13633 |
30076-30078 |
IN |
denotes |
at |
| T13634 |
30079-30082 |
NN |
denotes |
IAP |
| T13635 |
30083-30091 |
NNS |
denotes |
elements |
| T13636 |
30091-30093 |
, |
denotes |
, |
| T13637 |
30093-30098 |
WDT |
denotes |
which |
| T13638 |
30099-30102 |
VBP |
denotes |
are |
| T13639 |
30103-30111 |
VBN |
denotes |
repeated |
| T13640 |
30112-30121 |
NNS |
denotes |
sequences |
| T13641 |
30122-30128 |
VBN |
denotes |
spread |
| T13642 |
30129-30132 |
RB |
denotes |
all |
| T13643 |
30133-30137 |
IN |
denotes |
over |
| T13644 |
30138-30141 |
DT |
denotes |
the |
| T13645 |
30148-30154 |
NN |
denotes |
genome |
| T13646 |
30142-30147 |
NN |
denotes |
mouse |
| T13647 |
30154-30155 |
. |
denotes |
. |
| T13648 |
30155-30286 |
sentence |
denotes |
These data suggest that proper nuclear organization and epigenetic marking of pericentric heterochromatin are coupled in ES cells. |
| T13649 |
30156-30161 |
DT |
denotes |
These |
| T13650 |
30162-30166 |
NNS |
denotes |
data |
| T13651 |
30167-30174 |
VBP |
denotes |
suggest |
| T13652 |
30175-30179 |
IN |
denotes |
that |
| T13653 |
30266-30273 |
VBN |
denotes |
coupled |
| T13654 |
30180-30186 |
JJ |
denotes |
proper |
| T13655 |
30195-30207 |
NN |
denotes |
organization |
| T13656 |
30187-30194 |
JJ |
denotes |
nuclear |
| T13657 |
30208-30211 |
CC |
denotes |
and |
| T13658 |
30212-30222 |
JJ |
denotes |
epigenetic |
| T13659 |
30223-30230 |
NN |
denotes |
marking |
| T13660 |
30231-30233 |
IN |
denotes |
of |
| T13661 |
30234-30245 |
JJ |
denotes |
pericentric |
| T13662 |
30246-30261 |
NN |
denotes |
heterochromatin |
| T13663 |
30262-30265 |
VBP |
denotes |
are |
| T13664 |
30274-30276 |
IN |
denotes |
in |
| T13665 |
30277-30279 |
NN |
denotes |
ES |
| T13666 |
30280-30285 |
NNS |
denotes |
cells |
| T13667 |
30285-30286 |
. |
denotes |
. |
| T13668 |
30286-30412 |
sentence |
denotes |
Alternatively, 3-D organization of heterochromatin and epigenetic marking might represent two independent functions of CAF-1. |
| T13669 |
30287-30300 |
RB |
denotes |
Alternatively |
| T13670 |
30367-30376 |
VB |
denotes |
represent |
| T13671 |
30300-30302 |
, |
denotes |
, |
| T13672 |
30302-30303 |
CD |
denotes |
3 |
| T13673 |
30304-30305 |
NN |
denotes |
D |
| T13674 |
30303-30304 |
HYPH |
denotes |
- |
| T13675 |
30306-30318 |
NN |
denotes |
organization |
| T13676 |
30319-30321 |
IN |
denotes |
of |
| T13677 |
30322-30337 |
NN |
denotes |
heterochromatin |
| T13678 |
30338-30341 |
CC |
denotes |
and |
| T13679 |
30342-30352 |
JJ |
denotes |
epigenetic |
| T13680 |
30353-30360 |
NN |
denotes |
marking |
| T13681 |
30361-30366 |
MD |
denotes |
might |
| T13682 |
30377-30380 |
CD |
denotes |
two |
| T13683 |
30393-30402 |
NNS |
denotes |
functions |
| T13684 |
30381-30392 |
JJ |
denotes |
independent |
| T13685 |
30403-30405 |
IN |
denotes |
of |
| T13686 |
30406-30409 |
NN |
denotes |
CAF |
| T13687 |
30409-30410 |
HYPH |
denotes |
- |
| T13688 |
30410-30411 |
CD |
denotes |
1 |
| T13689 |
30411-30412 |
. |
denotes |
. |
| T13690 |
30412-30588 |
sentence |
denotes |
The variable requirement for CAF-1 across species might reflect the acquisition of new properties affecting the function of histone H3 variants during evolution of eukaryotes. |
| T13691 |
30413-30416 |
DT |
denotes |
The |
| T13692 |
30426-30437 |
NN |
denotes |
requirement |
| T13693 |
30417-30425 |
JJ |
denotes |
variable |
| T13694 |
30469-30476 |
VB |
denotes |
reflect |
| T13695 |
30438-30441 |
IN |
denotes |
for |
| T13696 |
30442-30445 |
NN |
denotes |
CAF |
| T13697 |
30445-30446 |
HYPH |
denotes |
- |
| T13698 |
30446-30447 |
CD |
denotes |
1 |
| T13699 |
30448-30454 |
IN |
denotes |
across |
| T13700 |
30455-30462 |
NNS |
denotes |
species |
| T13701 |
30463-30468 |
MD |
denotes |
might |
| T13702 |
30477-30480 |
DT |
denotes |
the |
| T13703 |
30481-30492 |
NN |
denotes |
acquisition |
| T13704 |
30493-30495 |
IN |
denotes |
of |
| T13705 |
30496-30499 |
JJ |
denotes |
new |
| T13706 |
30500-30510 |
NNS |
denotes |
properties |
| T13707 |
30511-30520 |
VBG |
denotes |
affecting |
| T13708 |
30521-30524 |
DT |
denotes |
the |
| T13709 |
30525-30533 |
NN |
denotes |
function |
| T13710 |
30534-30536 |
IN |
denotes |
of |
| T13711 |
30537-30544 |
NN |
denotes |
histone |
| T13712 |
30545-30547 |
NN |
denotes |
H3 |
| T13713 |
30548-30556 |
NNS |
denotes |
variants |
| T13714 |
30557-30563 |
IN |
denotes |
during |
| T13715 |
30564-30573 |
NN |
denotes |
evolution |
| T13716 |
30574-30576 |
IN |
denotes |
of |
| T13717 |
30577-30587 |
NNS |
denotes |
eukaryotes |
| T13718 |
30587-30588 |
. |
denotes |
. |
| T13719 |
30588-30668 |
sentence |
denotes |
CAF-1 is essential in mammals but dispensable in Saccharomyces cerevisiae [38]. |
| T13720 |
30589-30592 |
NN |
denotes |
CAF |
| T13721 |
30595-30597 |
VBZ |
denotes |
is |
| T13722 |
30592-30593 |
HYPH |
denotes |
- |
| T13723 |
30593-30594 |
CD |
denotes |
1 |
| T13724 |
30598-30607 |
JJ |
denotes |
essential |
| T13725 |
30608-30610 |
IN |
denotes |
in |
| T13726 |
30611-30618 |
NNS |
denotes |
mammals |
| T13727 |
30619-30622 |
CC |
denotes |
but |
| T13728 |
30623-30634 |
JJ |
denotes |
dispensable |
| T13729 |
30635-30637 |
IN |
denotes |
in |
| T13730 |
30638-30651 |
NNP |
denotes |
Saccharomyces |
| T13731 |
30652-30662 |
NNP |
denotes |
cerevisiae |
| T13732 |
30663-30664 |
-LRB- |
denotes |
[ |
| T13733 |
30664-30666 |
CD |
denotes |
38 |
| T13734 |
30666-30667 |
-RRB- |
denotes |
] |
| T13735 |
30667-30668 |
. |
denotes |
. |
| T13736 |
30668-30956 |
sentence |
denotes |
Interestingly, the budding yeast genome does not contain heterochromatin regions equivalent to those of higher eukaryotes, and several hallmark features of heterochromatin such as di- and trimethylation at H3K9, H3K27, and H4K20 are not observed in the silent chromatin of S. cerevisiae. |
| T13737 |
30669-30682 |
RB |
denotes |
Interestingly |
| T13738 |
30718-30725 |
VB |
denotes |
contain |
| T13739 |
30682-30684 |
, |
denotes |
, |
| T13740 |
30684-30687 |
DT |
denotes |
the |
| T13741 |
30702-30708 |
NN |
denotes |
genome |
| T13742 |
30688-30695 |
VBG |
denotes |
budding |
| T13743 |
30696-30701 |
NN |
denotes |
yeast |
| T13744 |
30709-30713 |
VBZ |
denotes |
does |
| T13745 |
30714-30717 |
RB |
denotes |
not |
| T13746 |
30726-30741 |
NN |
denotes |
heterochromatin |
| T13747 |
30742-30749 |
NNS |
denotes |
regions |
| T13748 |
30750-30760 |
JJ |
denotes |
equivalent |
| T13749 |
30761-30763 |
IN |
denotes |
to |
| T13750 |
30764-30769 |
DT |
denotes |
those |
| T13751 |
30770-30772 |
IN |
denotes |
of |
| T13752 |
30773-30779 |
JJR |
denotes |
higher |
| T13753 |
30780-30790 |
NNS |
denotes |
eukaryotes |
| T13754 |
30790-30792 |
, |
denotes |
, |
| T13755 |
30792-30795 |
CC |
denotes |
and |
| T13756 |
30796-30803 |
JJ |
denotes |
several |
| T13757 |
30813-30821 |
NNS |
denotes |
features |
| T13758 |
30804-30812 |
NN |
denotes |
hallmark |
| T13759 |
30906-30914 |
VBN |
denotes |
observed |
| T13760 |
30822-30824 |
IN |
denotes |
of |
| T13761 |
30825-30840 |
NN |
denotes |
heterochromatin |
| T13762 |
30841-30845 |
JJ |
denotes |
such |
| T13763 |
30846-30848 |
IN |
denotes |
as |
| T13764 |
30849-30851 |
AFX |
denotes |
di |
| T13765 |
30857-30871 |
NN |
denotes |
trimethylation |
| T13766 |
30851-30852 |
HYPH |
denotes |
- |
| T13767 |
30853-30856 |
CC |
denotes |
and |
| T13768 |
30872-30874 |
IN |
denotes |
at |
| T13769 |
30875-30879 |
NN |
denotes |
H3K9 |
| T13770 |
30879-30881 |
, |
denotes |
, |
| T13771 |
30881-30886 |
NN |
denotes |
H3K27 |
| T13772 |
30886-30888 |
, |
denotes |
, |
| T13773 |
30888-30891 |
CC |
denotes |
and |
| T13774 |
30892-30897 |
NN |
denotes |
H4K20 |
| T13775 |
30898-30901 |
VBP |
denotes |
are |
| T13776 |
30902-30905 |
RB |
denotes |
not |
| T13777 |
30915-30917 |
IN |
denotes |
in |
| T13778 |
30918-30921 |
DT |
denotes |
the |
| T13779 |
30929-30938 |
NN |
denotes |
chromatin |
| T13780 |
30922-30928 |
JJ |
denotes |
silent |
| T13781 |
30939-30941 |
IN |
denotes |
of |
| T13782 |
30942-30944 |
NNP |
denotes |
S. |
| T13783 |
30945-30955 |
NNP |
denotes |
cerevisiae |
| T13784 |
30955-30956 |
. |
denotes |
. |
| T13785 |
30956-31128 |
sentence |
denotes |
In mammals, H3K9 dimethylation is predominantly associated with H3.1, but not with H3.3, which carries modifications typically found in transcribed chromatin regions [39]. |
| T13786 |
30957-30959 |
IN |
denotes |
In |
| T13787 |
31005-31015 |
VBN |
denotes |
associated |
| T13788 |
30960-30967 |
NNS |
denotes |
mammals |
| T13789 |
30967-30969 |
, |
denotes |
, |
| T13790 |
30969-30973 |
NN |
denotes |
H3K9 |
| T13791 |
30974-30987 |
NN |
denotes |
dimethylation |
| T13792 |
30988-30990 |
VBZ |
denotes |
is |
| T13793 |
30991-31004 |
RB |
denotes |
predominantly |
| T13794 |
31016-31020 |
IN |
denotes |
with |
| T13795 |
31021-31025 |
NN |
denotes |
H3.1 |
| T13796 |
31025-31027 |
, |
denotes |
, |
| T13797 |
31027-31030 |
CC |
denotes |
but |
| T13798 |
31031-31034 |
RB |
denotes |
not |
| T13799 |
31035-31039 |
IN |
denotes |
with |
| T13800 |
31040-31044 |
NN |
denotes |
H3.3 |
| T13801 |
31044-31046 |
, |
denotes |
, |
| T13802 |
31046-31051 |
WDT |
denotes |
which |
| T13803 |
31052-31059 |
VBZ |
denotes |
carries |
| T13804 |
31060-31073 |
NNS |
denotes |
modifications |
| T13805 |
31074-31083 |
RB |
denotes |
typically |
| T13806 |
31084-31089 |
VBN |
denotes |
found |
| T13807 |
31090-31092 |
IN |
denotes |
in |
| T13808 |
31093-31104 |
VBN |
denotes |
transcribed |
| T13809 |
31115-31122 |
NNS |
denotes |
regions |
| T13810 |
31105-31114 |
NN |
denotes |
chromatin |
| T13811 |
31123-31124 |
-LRB- |
denotes |
[ |
| T13812 |
31124-31126 |
CD |
denotes |
39 |
| T13813 |
31126-31127 |
-RRB- |
denotes |
] |
| T13814 |
31127-31128 |
. |
denotes |
. |
| T13815 |
31128-31317 |
sentence |
denotes |
Outside of the centromeric H3 variant, S. cerevisiae possesses only H3.3, which is expressed and incorporated into chromatin in a replication-independent fashion in higher eukaryotes [12]. |
| T13816 |
31129-31136 |
IN |
denotes |
Outside |
| T13817 |
31182-31191 |
VBZ |
denotes |
possesses |
| T13818 |
31137-31139 |
IN |
denotes |
of |
| T13819 |
31140-31143 |
DT |
denotes |
the |
| T13820 |
31159-31166 |
NN |
denotes |
variant |
| T13821 |
31144-31155 |
JJ |
denotes |
centromeric |
| T13822 |
31156-31158 |
NN |
denotes |
H3 |
| T13823 |
31166-31168 |
, |
denotes |
, |
| T13824 |
31168-31170 |
NNP |
denotes |
S. |
| T13825 |
31171-31181 |
NNP |
denotes |
cerevisiae |
| T13826 |
31192-31196 |
RB |
denotes |
only |
| T13827 |
31197-31201 |
NN |
denotes |
H3.3 |
| T13828 |
31201-31203 |
, |
denotes |
, |
| T13829 |
31203-31208 |
WDT |
denotes |
which |
| T13830 |
31212-31221 |
VBN |
denotes |
expressed |
| T13831 |
31209-31211 |
VBZ |
denotes |
is |
| T13832 |
31222-31225 |
CC |
denotes |
and |
| T13833 |
31226-31238 |
VBN |
denotes |
incorporated |
| T13834 |
31239-31243 |
IN |
denotes |
into |
| T13835 |
31244-31253 |
NN |
denotes |
chromatin |
| T13836 |
31254-31256 |
IN |
denotes |
in |
| T13837 |
31257-31258 |
DT |
denotes |
a |
| T13838 |
31283-31290 |
NN |
denotes |
fashion |
| T13839 |
31259-31270 |
NN |
denotes |
replication |
| T13840 |
31271-31282 |
JJ |
denotes |
independent |
| T13841 |
31270-31271 |
HYPH |
denotes |
- |
| T13842 |
31291-31293 |
IN |
denotes |
in |
| T13843 |
31294-31300 |
JJR |
denotes |
higher |
| T13844 |
31301-31311 |
NNS |
denotes |
eukaryotes |
| T13845 |
31312-31313 |
-LRB- |
denotes |
[ |
| T13846 |
31313-31315 |
CD |
denotes |
12 |
| T13847 |
31315-31316 |
-RRB- |
denotes |
] |
| T13848 |
31316-31317 |
. |
denotes |
. |
| T13849 |
31317-31389 |
sentence |
denotes |
These data suggest a specific role for H3.1 in heterochromatin regions. |
| T13850 |
31318-31323 |
DT |
denotes |
These |
| T13851 |
31324-31328 |
NNS |
denotes |
data |
| T13852 |
31329-31336 |
VBP |
denotes |
suggest |
| T13853 |
31337-31338 |
DT |
denotes |
a |
| T13854 |
31348-31352 |
NN |
denotes |
role |
| T13855 |
31339-31347 |
JJ |
denotes |
specific |
| T13856 |
31353-31356 |
IN |
denotes |
for |
| T13857 |
31357-31361 |
NN |
denotes |
H3.1 |
| T13858 |
31362-31364 |
IN |
denotes |
in |
| T13859 |
31365-31380 |
NN |
denotes |
heterochromatin |
| T13860 |
31381-31388 |
NNS |
denotes |
regions |
| T13861 |
31388-31389 |
. |
denotes |
. |
| T13862 |
31389-31584 |
sentence |
denotes |
We show here that CAF-1, which is a H3.1 replication-dependent loading complex [11], is specifically required for the nuclear organization of pericentric heterochromatin in embryos and ES cells. |
| T13863 |
31390-31392 |
PRP |
denotes |
We |
| T13864 |
31393-31397 |
VBP |
denotes |
show |
| T13865 |
31398-31402 |
RB |
denotes |
here |
| T13866 |
31403-31407 |
IN |
denotes |
that |
| T13867 |
31491-31499 |
VBN |
denotes |
required |
| T13868 |
31408-31411 |
NN |
denotes |
CAF |
| T13869 |
31411-31412 |
HYPH |
denotes |
- |
| T13870 |
31412-31413 |
CD |
denotes |
1 |
| T13871 |
31413-31415 |
, |
denotes |
, |
| T13872 |
31415-31420 |
WDT |
denotes |
which |
| T13873 |
31421-31423 |
VBZ |
denotes |
is |
| T13874 |
31424-31425 |
DT |
denotes |
a |
| T13875 |
31461-31468 |
NN |
denotes |
complex |
| T13876 |
31426-31430 |
NN |
denotes |
H3.1 |
| T13877 |
31431-31442 |
NN |
denotes |
replication |
| T13878 |
31443-31452 |
JJ |
denotes |
dependent |
| T13879 |
31442-31443 |
HYPH |
denotes |
- |
| T13880 |
31453-31460 |
NN |
denotes |
loading |
| T13881 |
31469-31470 |
-LRB- |
denotes |
[ |
| T13882 |
31470-31472 |
CD |
denotes |
11 |
| T13883 |
31472-31473 |
-RRB- |
denotes |
] |
| T13884 |
31473-31475 |
, |
denotes |
, |
| T13885 |
31475-31477 |
VBZ |
denotes |
is |
| T13886 |
31478-31490 |
RB |
denotes |
specifically |
| T13887 |
31500-31503 |
IN |
denotes |
for |
| T13888 |
31504-31507 |
DT |
denotes |
the |
| T13889 |
31516-31528 |
NN |
denotes |
organization |
| T13890 |
31508-31515 |
JJ |
denotes |
nuclear |
| T13891 |
31529-31531 |
IN |
denotes |
of |
| T13892 |
31532-31543 |
JJ |
denotes |
pericentric |
| T13893 |
31544-31559 |
NN |
denotes |
heterochromatin |
| T13894 |
31560-31562 |
IN |
denotes |
in |
| T13895 |
31563-31570 |
NNS |
denotes |
embryos |
| T13896 |
31571-31574 |
CC |
denotes |
and |
| T13897 |
31575-31577 |
NN |
denotes |
ES |
| T13898 |
31578-31583 |
NNS |
denotes |
cells |
| T13899 |
31583-31584 |
. |
denotes |
. |
| T13900 |
31584-31771 |
sentence |
denotes |
One possibility would be a scenario in which incorporation of H3.1 into chromatin is required for the proper nuclear organization of constitutive heterochromatin in an embryonic context. |
| T13901 |
31585-31588 |
CD |
denotes |
One |
| T13902 |
31589-31600 |
NN |
denotes |
possibility |
| T13903 |
31607-31609 |
VB |
denotes |
be |
| T13904 |
31601-31606 |
MD |
denotes |
would |
| T13905 |
31610-31611 |
DT |
denotes |
a |
| T13906 |
31612-31620 |
NN |
denotes |
scenario |
| T13907 |
31621-31623 |
IN |
denotes |
in |
| T13908 |
31670-31678 |
VBN |
denotes |
required |
| T13909 |
31624-31629 |
WDT |
denotes |
which |
| T13910 |
31630-31643 |
NN |
denotes |
incorporation |
| T13911 |
31644-31646 |
IN |
denotes |
of |
| T13912 |
31647-31651 |
NN |
denotes |
H3.1 |
| T13913 |
31652-31656 |
IN |
denotes |
into |
| T13914 |
31657-31666 |
NN |
denotes |
chromatin |
| T13915 |
31667-31669 |
VBZ |
denotes |
is |
| T13916 |
31679-31682 |
IN |
denotes |
for |
| T13917 |
31683-31686 |
DT |
denotes |
the |
| T13918 |
31702-31714 |
NN |
denotes |
organization |
| T13919 |
31687-31693 |
JJ |
denotes |
proper |
| T13920 |
31694-31701 |
JJ |
denotes |
nuclear |
| T13921 |
31715-31717 |
IN |
denotes |
of |
| T13922 |
31718-31730 |
JJ |
denotes |
constitutive |
| T13923 |
31731-31746 |
NN |
denotes |
heterochromatin |
| T13924 |
31747-31749 |
IN |
denotes |
in |
| T13925 |
31750-31752 |
DT |
denotes |
an |
| T13926 |
31763-31770 |
NN |
denotes |
context |
| T13927 |
31753-31762 |
JJ |
denotes |
embryonic |
| T13928 |
31770-31771 |
. |
denotes |
. |
| T13929 |
31771-31979 |
sentence |
denotes |
While this has to be addressed experimentally, it is worthwhile to mention an alternate possible mechanism that might explain the disruption of heterochromatin domains in p150CAF-1 null embryos and ES cells. |
| T13930 |
31772-31777 |
IN |
denotes |
While |
| T13931 |
31783-31786 |
VBZ |
denotes |
has |
| T13932 |
31778-31782 |
DT |
denotes |
this |
| T13933 |
31822-31824 |
VBZ |
denotes |
is |
| T13934 |
31787-31789 |
TO |
denotes |
to |
| T13935 |
31793-31802 |
VBN |
denotes |
addressed |
| T13936 |
31790-31792 |
VB |
denotes |
be |
| T13937 |
31803-31817 |
RB |
denotes |
experimentally |
| T13938 |
31817-31819 |
, |
denotes |
, |
| T13939 |
31819-31821 |
PRP |
denotes |
it |
| T13940 |
31825-31835 |
JJ |
denotes |
worthwhile |
| T13941 |
31836-31838 |
TO |
denotes |
to |
| T13942 |
31839-31846 |
VB |
denotes |
mention |
| T13943 |
31847-31849 |
DT |
denotes |
an |
| T13944 |
31869-31878 |
NN |
denotes |
mechanism |
| T13945 |
31850-31859 |
JJ |
denotes |
alternate |
| T13946 |
31860-31868 |
JJ |
denotes |
possible |
| T13947 |
31879-31883 |
WDT |
denotes |
that |
| T13948 |
31890-31897 |
VB |
denotes |
explain |
| T13949 |
31884-31889 |
MD |
denotes |
might |
| T13950 |
31898-31901 |
DT |
denotes |
the |
| T13951 |
31902-31912 |
NN |
denotes |
disruption |
| T13952 |
31913-31915 |
IN |
denotes |
of |
| T13953 |
31916-31931 |
NN |
denotes |
heterochromatin |
| T13954 |
31932-31939 |
NNS |
denotes |
domains |
| T13955 |
31940-31942 |
IN |
denotes |
in |
| T13956 |
31943-31950 |
NN |
denotes |
p150CAF |
| T13957 |
31953-31957 |
JJ |
denotes |
null |
| T13958 |
31950-31951 |
HYPH |
denotes |
- |
| T13959 |
31951-31952 |
CD |
denotes |
1 |
| T13960 |
31958-31965 |
NNS |
denotes |
embryos |
| T13961 |
31966-31969 |
CC |
denotes |
and |
| T13962 |
31970-31972 |
NN |
denotes |
ES |
| T13963 |
31973-31978 |
NNS |
denotes |
cells |
| T13964 |
31978-31979 |
. |
denotes |
. |
| T13965 |
31979-32120 |
sentence |
denotes |
CAF-1 could be required for the loading, into heterochromatin, of an interacting partner required for the clustering of pericentric domains. |
| T13966 |
31980-31983 |
NN |
denotes |
CAF |
| T13967 |
31995-32003 |
VBN |
denotes |
required |
| T13968 |
31983-31984 |
HYPH |
denotes |
- |
| T13969 |
31984-31985 |
CD |
denotes |
1 |
| T13970 |
31986-31991 |
MD |
denotes |
could |
| T13971 |
31992-31994 |
VB |
denotes |
be |
| T13972 |
32004-32007 |
IN |
denotes |
for |
| T13973 |
32008-32011 |
DT |
denotes |
the |
| T13974 |
32012-32019 |
NN |
denotes |
loading |
| T13975 |
32019-32021 |
, |
denotes |
, |
| T13976 |
32021-32025 |
IN |
denotes |
into |
| T13977 |
32026-32041 |
NN |
denotes |
heterochromatin |
| T13978 |
32041-32043 |
, |
denotes |
, |
| T13979 |
32043-32045 |
IN |
denotes |
of |
| T13980 |
32046-32048 |
DT |
denotes |
an |
| T13981 |
32061-32068 |
NN |
denotes |
partner |
| T13982 |
32049-32060 |
VBG |
denotes |
interacting |
| T13983 |
32069-32077 |
VBN |
denotes |
required |
| T13984 |
32078-32081 |
IN |
denotes |
for |
| T13985 |
32082-32085 |
DT |
denotes |
the |
| T13986 |
32086-32096 |
NN |
denotes |
clustering |
| T13987 |
32097-32099 |
IN |
denotes |
of |
| T13988 |
32100-32111 |
JJ |
denotes |
pericentric |
| T13989 |
32112-32119 |
NNS |
denotes |
domains |
| T13990 |
32119-32120 |
. |
denotes |
. |
| T13991 |
32120-32310 |
sentence |
denotes |
Following one or two rounds of DNA replication in the absence of p150CAF-1, heterochromatin would become deprived of this molecule, which would cause the disruption of its 3-D organization. |
| T13992 |
32121-32130 |
VBG |
denotes |
Following |
| T13993 |
32219-32225 |
VB |
denotes |
become |
| T13994 |
32131-32134 |
CD |
denotes |
one |
| T13995 |
32142-32148 |
NNS |
denotes |
rounds |
| T13996 |
32135-32137 |
CC |
denotes |
or |
| T13997 |
32138-32141 |
CD |
denotes |
two |
| T13998 |
32149-32151 |
IN |
denotes |
of |
| T13999 |
32152-32155 |
NN |
denotes |
DNA |
| T14000 |
32156-32167 |
NN |
denotes |
replication |
| T14001 |
32168-32170 |
IN |
denotes |
in |
| T14002 |
32171-32174 |
DT |
denotes |
the |
| T14003 |
32175-32182 |
NN |
denotes |
absence |
| T14004 |
32183-32185 |
IN |
denotes |
of |
| T14005 |
32186-32193 |
NN |
denotes |
p150CAF |
| T14006 |
32193-32194 |
HYPH |
denotes |
- |
| T14007 |
32194-32195 |
CD |
denotes |
1 |
| T14008 |
32195-32197 |
, |
denotes |
, |
| T14009 |
32197-32212 |
NN |
denotes |
heterochromatin |
| T14010 |
32213-32218 |
MD |
denotes |
would |
| T14011 |
32226-32234 |
JJ |
denotes |
deprived |
| T14012 |
32235-32237 |
IN |
denotes |
of |
| T14013 |
32238-32242 |
DT |
denotes |
this |
| T14014 |
32243-32251 |
NN |
denotes |
molecule |
| T14015 |
32251-32253 |
, |
denotes |
, |
| T14016 |
32253-32258 |
WDT |
denotes |
which |
| T14017 |
32265-32270 |
VB |
denotes |
cause |
| T14018 |
32259-32264 |
MD |
denotes |
would |
| T14019 |
32271-32274 |
DT |
denotes |
the |
| T14020 |
32275-32285 |
NN |
denotes |
disruption |
| T14021 |
32286-32288 |
IN |
denotes |
of |
| T14022 |
32289-32292 |
PRP$ |
denotes |
its |
| T14023 |
32297-32309 |
NN |
denotes |
organization |
| T14024 |
32293-32294 |
CD |
denotes |
3 |
| T14025 |
32295-32296 |
NN |
denotes |
D |
| T14026 |
32294-32295 |
HYPH |
denotes |
- |
| T14027 |
32309-32310 |
. |
denotes |
. |
| T14028 |
32310-32388 |
sentence |
denotes |
A potential candidate is the HP1 protein, which interacts with CAF-1 [13,16]. |
| T14029 |
32311-32312 |
DT |
denotes |
A |
| T14030 |
32323-32332 |
NN |
denotes |
candidate |
| T14031 |
32313-32322 |
JJ |
denotes |
potential |
| T14032 |
32333-32335 |
VBZ |
denotes |
is |
| T14033 |
32336-32339 |
DT |
denotes |
the |
| T14034 |
32344-32351 |
NN |
denotes |
protein |
| T14035 |
32340-32343 |
NN |
denotes |
HP1 |
| T14036 |
32351-32353 |
, |
denotes |
, |
| T14037 |
32353-32358 |
WDT |
denotes |
which |
| T14038 |
32359-32368 |
VBZ |
denotes |
interacts |
| T14039 |
32369-32373 |
IN |
denotes |
with |
| T14040 |
32374-32377 |
NN |
denotes |
CAF |
| T14041 |
32377-32378 |
HYPH |
denotes |
- |
| T14042 |
32378-32379 |
CD |
denotes |
1 |
| T14043 |
32380-32381 |
-LRB- |
denotes |
[ |
| T14044 |
32384-32386 |
CD |
denotes |
16 |
| T14045 |
32381-32383 |
CD |
denotes |
13 |
| T14046 |
32383-32384 |
, |
denotes |
, |
| T14047 |
32386-32387 |
-RRB- |
denotes |
] |
| T14048 |
32387-32388 |
. |
denotes |
. |
| T14049 |
32388-32585 |
sentence |
denotes |
In agreement with a recent report [40], our analysis of heterochromatin in pre-implantation embryos has revealed drastic changes in nuclear organization between the two-cell and blastocyst stages. |
| T14050 |
32389-32391 |
IN |
denotes |
In |
| T14051 |
32493-32501 |
VBN |
denotes |
revealed |
| T14052 |
32392-32401 |
NN |
denotes |
agreement |
| T14053 |
32402-32406 |
IN |
denotes |
with |
| T14054 |
32407-32408 |
DT |
denotes |
a |
| T14055 |
32416-32422 |
NN |
denotes |
report |
| T14056 |
32409-32415 |
JJ |
denotes |
recent |
| T14057 |
32423-32424 |
-LRB- |
denotes |
[ |
| T14058 |
32424-32426 |
CD |
denotes |
40 |
| T14059 |
32426-32427 |
-RRB- |
denotes |
] |
| T14060 |
32427-32429 |
, |
denotes |
, |
| T14061 |
32429-32432 |
PRP$ |
denotes |
our |
| T14062 |
32433-32441 |
NN |
denotes |
analysis |
| T14063 |
32442-32444 |
IN |
denotes |
of |
| T14064 |
32445-32460 |
NN |
denotes |
heterochromatin |
| T14065 |
32461-32463 |
IN |
denotes |
in |
| T14066 |
32464-32480 |
JJ |
denotes |
pre-implantation |
| T14067 |
32481-32488 |
NNS |
denotes |
embryos |
| T14068 |
32489-32492 |
VBZ |
denotes |
has |
| T14069 |
32502-32509 |
JJ |
denotes |
drastic |
| T14070 |
32510-32517 |
NNS |
denotes |
changes |
| T14071 |
32518-32520 |
IN |
denotes |
in |
| T14072 |
32521-32528 |
JJ |
denotes |
nuclear |
| T14073 |
32529-32541 |
NN |
denotes |
organization |
| T14074 |
32542-32549 |
IN |
denotes |
between |
| T14075 |
32550-32553 |
DT |
denotes |
the |
| T14076 |
32578-32584 |
NNS |
denotes |
stages |
| T14077 |
32554-32557 |
CD |
denotes |
two |
| T14078 |
32558-32562 |
NN |
denotes |
cell |
| T14079 |
32557-32558 |
HYPH |
denotes |
- |
| T14080 |
32563-32566 |
CC |
denotes |
and |
| T14081 |
32567-32577 |
NN |
denotes |
blastocyst |
| T14082 |
32584-32585 |
. |
denotes |
. |
| T14083 |
32585-32778 |
sentence |
denotes |
Cloning experiments in mouse revealed that the nuclear organization of heterochromatin in ES cell nuclei was quickly reverted into the one-cell stage-specific form after nuclear transfer [40]. |
| T14084 |
32586-32593 |
NN |
denotes |
Cloning |
| T14085 |
32594-32605 |
NNS |
denotes |
experiments |
| T14086 |
32615-32623 |
VBD |
denotes |
revealed |
| T14087 |
32606-32608 |
IN |
denotes |
in |
| T14088 |
32609-32614 |
NN |
denotes |
mouse |
| T14089 |
32624-32628 |
IN |
denotes |
that |
| T14090 |
32703-32711 |
VBN |
denotes |
reverted |
| T14091 |
32629-32632 |
DT |
denotes |
the |
| T14092 |
32641-32653 |
NN |
denotes |
organization |
| T14093 |
32633-32640 |
JJ |
denotes |
nuclear |
| T14094 |
32654-32656 |
IN |
denotes |
of |
| T14095 |
32657-32672 |
NN |
denotes |
heterochromatin |
| T14096 |
32673-32675 |
IN |
denotes |
in |
| T14097 |
32676-32678 |
NN |
denotes |
ES |
| T14098 |
32684-32690 |
NNS |
denotes |
nuclei |
| T14099 |
32679-32683 |
NN |
denotes |
cell |
| T14100 |
32691-32694 |
VBD |
denotes |
was |
| T14101 |
32695-32702 |
RB |
denotes |
quickly |
| T14102 |
32712-32716 |
IN |
denotes |
into |
| T14103 |
32717-32720 |
DT |
denotes |
the |
| T14104 |
32745-32749 |
NN |
denotes |
form |
| T14105 |
32721-32724 |
CD |
denotes |
one |
| T14106 |
32725-32729 |
NN |
denotes |
cell |
| T14107 |
32724-32725 |
HYPH |
denotes |
- |
| T14108 |
32730-32735 |
NN |
denotes |
stage |
| T14109 |
32736-32744 |
JJ |
denotes |
specific |
| T14110 |
32735-32736 |
HYPH |
denotes |
- |
| T14111 |
32750-32755 |
IN |
denotes |
after |
| T14112 |
32756-32763 |
JJ |
denotes |
nuclear |
| T14113 |
32764-32772 |
NN |
denotes |
transfer |
| T14114 |
32773-32774 |
-LRB- |
denotes |
[ |
| T14115 |
32774-32776 |
CD |
denotes |
40 |
| T14116 |
32776-32777 |
-RRB- |
denotes |
] |
| T14117 |
32777-32778 |
. |
denotes |
. |
| T14118 |
32778-32916 |
sentence |
denotes |
Hence, remodeling of heterochromatin 3-D organization parallels nuclear reprogramming toward an early embryonic status in cloned embryos. |
| T14119 |
32779-32784 |
RB |
denotes |
Hence |
| T14120 |
32833-32842 |
VBZ |
denotes |
parallels |
| T14121 |
32784-32786 |
, |
denotes |
, |
| T14122 |
32786-32796 |
NN |
denotes |
remodeling |
| T14123 |
32797-32799 |
IN |
denotes |
of |
| T14124 |
32800-32815 |
NN |
denotes |
heterochromatin |
| T14125 |
32820-32832 |
NN |
denotes |
organization |
| T14126 |
32816-32817 |
CD |
denotes |
3 |
| T14127 |
32818-32819 |
NN |
denotes |
D |
| T14128 |
32817-32818 |
HYPH |
denotes |
- |
| T14129 |
32843-32850 |
JJ |
denotes |
nuclear |
| T14130 |
32851-32864 |
NN |
denotes |
reprogramming |
| T14131 |
32865-32871 |
IN |
denotes |
toward |
| T14132 |
32872-32874 |
DT |
denotes |
an |
| T14133 |
32891-32897 |
NN |
denotes |
status |
| T14134 |
32875-32880 |
JJ |
denotes |
early |
| T14135 |
32881-32890 |
JJ |
denotes |
embryonic |
| T14136 |
32898-32900 |
IN |
denotes |
in |
| T14137 |
32901-32907 |
VBN |
denotes |
cloned |
| T14138 |
32908-32915 |
NNS |
denotes |
embryos |
| T14139 |
32915-32916 |
. |
denotes |
. |
| T14140 |
32916-33101 |
sentence |
denotes |
This drastic reorganization of heterochromatin organization is similar to that observed in p150CAF-1-depleted ES cells, and in developmentally arrested 16-cell stage Chaf1a−/− embryos. |
| T14141 |
32917-32921 |
DT |
denotes |
This |
| T14142 |
32930-32944 |
NN |
denotes |
reorganization |
| T14143 |
32922-32929 |
JJ |
denotes |
drastic |
| T14144 |
32977-32979 |
VBZ |
denotes |
is |
| T14145 |
32945-32947 |
IN |
denotes |
of |
| T14146 |
32948-32963 |
NN |
denotes |
heterochromatin |
| T14147 |
32964-32976 |
NN |
denotes |
organization |
| T14148 |
32980-32987 |
JJ |
denotes |
similar |
| T14149 |
32988-32990 |
IN |
denotes |
to |
| T14150 |
32991-32995 |
DT |
denotes |
that |
| T14151 |
32996-33004 |
VBN |
denotes |
observed |
| T14152 |
33005-33007 |
IN |
denotes |
in |
| T14153 |
33008-33015 |
NN |
denotes |
p150CAF |
| T14154 |
33018-33026 |
VBN |
denotes |
depleted |
| T14155 |
33015-33016 |
HYPH |
denotes |
- |
| T14156 |
33016-33017 |
CD |
denotes |
1 |
| T14157 |
33017-33018 |
HYPH |
denotes |
- |
| T14158 |
33030-33035 |
NNS |
denotes |
cells |
| T14159 |
33027-33029 |
NN |
denotes |
ES |
| T14160 |
33035-33037 |
, |
denotes |
, |
| T14161 |
33037-33040 |
CC |
denotes |
and |
| T14162 |
33041-33043 |
IN |
denotes |
in |
| T14163 |
33044-33059 |
RB |
denotes |
developmentally |
| T14164 |
33060-33068 |
VBN |
denotes |
arrested |
| T14165 |
33093-33100 |
NNS |
denotes |
embryos |
| T14166 |
33069-33071 |
CD |
denotes |
16 |
| T14167 |
33072-33076 |
NN |
denotes |
cell |
| T14168 |
33071-33072 |
HYPH |
denotes |
- |
| T14169 |
33077-33082 |
NN |
denotes |
stage |
| T14170 |
33083-33089 |
NN |
denotes |
Chaf1a |
| T14171 |
33089-33090 |
SYM |
denotes |
− |
| T14172 |
33090-33091 |
HYPH |
denotes |
/ |
| T14173 |
33091-33092 |
SYM |
denotes |
− |
| T14174 |
33100-33101 |
. |
denotes |
. |
| T14175 |
33101-33241 |
sentence |
denotes |
These data show that CAF-1 is involved in setting up proper heterochromatin architecture during the first cell divisions of embryonic life. |
| T14176 |
33102-33107 |
DT |
denotes |
These |
| T14177 |
33108-33112 |
NNS |
denotes |
data |
| T14178 |
33113-33117 |
VBP |
denotes |
show |
| T14179 |
33118-33122 |
IN |
denotes |
that |
| T14180 |
33132-33140 |
VBN |
denotes |
involved |
| T14181 |
33123-33126 |
NN |
denotes |
CAF |
| T14182 |
33126-33127 |
HYPH |
denotes |
- |
| T14183 |
33127-33128 |
CD |
denotes |
1 |
| T14184 |
33129-33131 |
VBZ |
denotes |
is |
| T14185 |
33141-33143 |
IN |
denotes |
in |
| T14186 |
33144-33151 |
VBG |
denotes |
setting |
| T14187 |
33152-33154 |
RP |
denotes |
up |
| T14188 |
33155-33161 |
JJ |
denotes |
proper |
| T14189 |
33178-33190 |
NN |
denotes |
architecture |
| T14190 |
33162-33177 |
NN |
denotes |
heterochromatin |
| T14191 |
33191-33197 |
IN |
denotes |
during |
| T14192 |
33198-33201 |
DT |
denotes |
the |
| T14193 |
33213-33222 |
NNS |
denotes |
divisions |
| T14194 |
33202-33207 |
JJ |
denotes |
first |
| T14195 |
33208-33212 |
NN |
denotes |
cell |
| T14196 |
33223-33225 |
IN |
denotes |
of |
| T14197 |
33226-33235 |
JJ |
denotes |
embryonic |
| T14198 |
33236-33240 |
NN |
denotes |
life |
| T14199 |
33240-33241 |
. |
denotes |
. |
| T14200 |
33241-33449 |
sentence |
denotes |
Given the importance of nuclear organization in the control of gene expression [21,41], this finding suggests that CAF-1 contributes to the coordinated programs of gene expression during early embryogenesis. |
| T14201 |
33242-33247 |
VBN |
denotes |
Given |
| T14202 |
33343-33351 |
VBZ |
denotes |
suggests |
| T14203 |
33248-33251 |
DT |
denotes |
the |
| T14204 |
33252-33262 |
NN |
denotes |
importance |
| T14205 |
33263-33265 |
IN |
denotes |
of |
| T14206 |
33266-33273 |
JJ |
denotes |
nuclear |
| T14207 |
33274-33286 |
NN |
denotes |
organization |
| T14208 |
33287-33289 |
IN |
denotes |
in |
| T14209 |
33290-33293 |
DT |
denotes |
the |
| T14210 |
33294-33301 |
NN |
denotes |
control |
| T14211 |
33302-33304 |
IN |
denotes |
of |
| T14212 |
33305-33309 |
NN |
denotes |
gene |
| T14213 |
33310-33320 |
NN |
denotes |
expression |
| T14214 |
33321-33322 |
-LRB- |
denotes |
[ |
| T14215 |
33325-33327 |
CD |
denotes |
41 |
| T14216 |
33322-33324 |
CD |
denotes |
21 |
| T14217 |
33324-33325 |
, |
denotes |
, |
| T14218 |
33327-33328 |
-RRB- |
denotes |
] |
| T14219 |
33328-33330 |
, |
denotes |
, |
| T14220 |
33330-33334 |
DT |
denotes |
this |
| T14221 |
33335-33342 |
NN |
denotes |
finding |
| T14222 |
33352-33356 |
IN |
denotes |
that |
| T14223 |
33363-33374 |
VBZ |
denotes |
contributes |
| T14224 |
33357-33360 |
NN |
denotes |
CAF |
| T14225 |
33360-33361 |
HYPH |
denotes |
- |
| T14226 |
33361-33362 |
CD |
denotes |
1 |
| T14227 |
33375-33377 |
IN |
denotes |
to |
| T14228 |
33378-33381 |
DT |
denotes |
the |
| T14229 |
33394-33402 |
NNS |
denotes |
programs |
| T14230 |
33382-33393 |
VBN |
denotes |
coordinated |
| T14231 |
33403-33405 |
IN |
denotes |
of |
| T14232 |
33406-33410 |
NN |
denotes |
gene |
| T14233 |
33411-33421 |
NN |
denotes |
expression |
| T14234 |
33422-33428 |
IN |
denotes |
during |
| T14235 |
33429-33434 |
JJ |
denotes |
early |
| T14236 |
33435-33448 |
NN |
denotes |
embryogenesis |
| T14237 |
33448-33449 |
. |
denotes |
. |
| T14238 |
33449-33588 |
sentence |
denotes |
Our findings open new perspectives in the understanding of chromatin dynamics during early development and in pluripotent embryonic cells. |
| T14239 |
33450-33453 |
PRP$ |
denotes |
Our |
| T14240 |
33454-33462 |
NNS |
denotes |
findings |
| T14241 |
33463-33467 |
VBP |
denotes |
open |
| T14242 |
33468-33471 |
JJ |
denotes |
new |
| T14243 |
33472-33484 |
NNS |
denotes |
perspectives |
| T14244 |
33485-33487 |
IN |
denotes |
in |
| T14245 |
33488-33491 |
DT |
denotes |
the |
| T14246 |
33492-33505 |
NN |
denotes |
understanding |
| T14247 |
33506-33508 |
IN |
denotes |
of |
| T14248 |
33509-33518 |
NN |
denotes |
chromatin |
| T14249 |
33519-33527 |
NNS |
denotes |
dynamics |
| T14250 |
33528-33534 |
IN |
denotes |
during |
| T14251 |
33535-33540 |
JJ |
denotes |
early |
| T14252 |
33541-33552 |
NN |
denotes |
development |
| T14253 |
33553-33556 |
CC |
denotes |
and |
| T14254 |
33557-33559 |
IN |
denotes |
in |
| T14255 |
33560-33571 |
JJ |
denotes |
pluripotent |
| T14256 |
33582-33587 |
NNS |
denotes |
cells |
| T14257 |
33572-33581 |
JJ |
denotes |
embryonic |
| T14258 |
33587-33588 |
. |
denotes |
. |
| T14259 |
33588-33751 |
sentence |
denotes |
While most studies focused on the role of DNA methylation and histone modifying enzymes [3], our data point to the importance of the chromatin assembly machinery. |
| T14260 |
33589-33594 |
IN |
denotes |
While |
| T14261 |
33608-33615 |
VBD |
denotes |
focused |
| T14262 |
33595-33599 |
JJS |
denotes |
most |
| T14263 |
33600-33607 |
NNS |
denotes |
studies |
| T14264 |
33691-33696 |
VBP |
denotes |
point |
| T14265 |
33616-33618 |
IN |
denotes |
on |
| T14266 |
33619-33622 |
DT |
denotes |
the |
| T14267 |
33623-33627 |
NN |
denotes |
role |
| T14268 |
33628-33630 |
IN |
denotes |
of |
| T14269 |
33631-33634 |
NN |
denotes |
DNA |
| T14270 |
33635-33646 |
NN |
denotes |
methylation |
| T14271 |
33647-33650 |
CC |
denotes |
and |
| T14272 |
33651-33658 |
NN |
denotes |
histone |
| T14273 |
33659-33668 |
VBG |
denotes |
modifying |
| T14274 |
33669-33676 |
NNS |
denotes |
enzymes |
| T14275 |
33677-33678 |
-LRB- |
denotes |
[ |
| T14276 |
33678-33679 |
CD |
denotes |
3 |
| T14277 |
33679-33680 |
-RRB- |
denotes |
] |
| T14278 |
33680-33682 |
, |
denotes |
, |
| T14279 |
33682-33685 |
PRP$ |
denotes |
our |
| T14280 |
33686-33690 |
NNS |
denotes |
data |
| T14281 |
33697-33699 |
IN |
denotes |
to |
| T14282 |
33700-33703 |
DT |
denotes |
the |
| T14283 |
33704-33714 |
NN |
denotes |
importance |
| T14284 |
33715-33717 |
IN |
denotes |
of |
| T14285 |
33718-33721 |
DT |
denotes |
the |
| T14286 |
33741-33750 |
NN |
denotes |
machinery |
| T14287 |
33722-33731 |
NN |
denotes |
chromatin |
| T14288 |
33732-33740 |
NN |
denotes |
assembly |
| T14289 |
33750-33751 |
. |
denotes |
. |
| T14290 |
33751-33911 |
sentence |
denotes |
We show that in addition to assembling nucleosomes, CAF-1 provides spatial and epigenetic information to heterochromatin domains in early embryos and ES cells. |
| T14291 |
33752-33754 |
PRP |
denotes |
We |
| T14292 |
33755-33759 |
VBP |
denotes |
show |
| T14293 |
33760-33764 |
IN |
denotes |
that |
| T14294 |
33810-33818 |
VBZ |
denotes |
provides |
| T14295 |
33765-33767 |
IN |
denotes |
in |
| T14296 |
33768-33776 |
NN |
denotes |
addition |
| T14297 |
33777-33779 |
IN |
denotes |
to |
| T14298 |
33780-33790 |
VBG |
denotes |
assembling |
| T14299 |
33791-33802 |
NNS |
denotes |
nucleosomes |
| T14300 |
33802-33804 |
, |
denotes |
, |
| T14301 |
33804-33807 |
NN |
denotes |
CAF |
| T14302 |
33807-33808 |
HYPH |
denotes |
- |
| T14303 |
33808-33809 |
CD |
denotes |
1 |
| T14304 |
33819-33826 |
JJ |
denotes |
spatial |
| T14305 |
33842-33853 |
NN |
denotes |
information |
| T14306 |
33827-33830 |
CC |
denotes |
and |
| T14307 |
33831-33841 |
JJ |
denotes |
epigenetic |
| T14308 |
33854-33856 |
IN |
denotes |
to |
| T14309 |
33857-33872 |
NN |
denotes |
heterochromatin |
| T14310 |
33873-33880 |
NNS |
denotes |
domains |
| T14311 |
33881-33883 |
IN |
denotes |
in |
| T14312 |
33884-33889 |
JJ |
denotes |
early |
| T14313 |
33890-33897 |
NNS |
denotes |
embryos |
| T14314 |
33898-33901 |
CC |
denotes |
and |
| T14315 |
33902-33904 |
NN |
denotes |
ES |
| T14316 |
33905-33910 |
NNS |
denotes |
cells |
| T14317 |
33910-33911 |
. |
denotes |
. |
| T14828 |
33936-33946 |
NN |
denotes |
Generation |
| T14829 |
33947-33949 |
IN |
denotes |
of |
| T14830 |
33950-33956 |
NN |
denotes |
Chaf1a |
| T14831 |
33957-33963 |
NN |
denotes |
mutant |
| T14832 |
33964-33968 |
NNS |
denotes |
mice |
| T14833 |
33969-33972 |
CC |
denotes |
and |
| T14834 |
33973-33980 |
NNS |
denotes |
embryos |
| T14835 |
33980-33981 |
. |
denotes |
. |
| T14836 |
33981-34069 |
sentence |
denotes |
Using PCR, we amplified two genomic fragments (about 3 kb each) flanking Chaf1a exon 3. |
| T14837 |
33982-33987 |
VBG |
denotes |
Using |
| T14838 |
33996-34005 |
VBD |
denotes |
amplified |
| T14839 |
33988-33991 |
NN |
denotes |
PCR |
| T14840 |
33991-33993 |
, |
denotes |
, |
| T14841 |
33993-33995 |
PRP |
denotes |
we |
| T14842 |
34006-34009 |
CD |
denotes |
two |
| T14843 |
34018-34027 |
NNS |
denotes |
fragments |
| T14844 |
34010-34017 |
JJ |
denotes |
genomic |
| T14845 |
34028-34029 |
-LRB- |
denotes |
( |
| T14846 |
34037-34039 |
NN |
denotes |
kb |
| T14847 |
34029-34034 |
IN |
denotes |
about |
| T14848 |
34035-34036 |
CD |
denotes |
3 |
| T14849 |
34040-34044 |
DT |
denotes |
each |
| T14850 |
34044-34045 |
-RRB- |
denotes |
) |
| T14851 |
34046-34054 |
VBG |
denotes |
flanking |
| T14852 |
34055-34061 |
NN |
denotes |
Chaf1a |
| T14853 |
34062-34066 |
NN |
denotes |
exon |
| T14854 |
34067-34068 |
CD |
denotes |
3 |
| T14855 |
34068-34069 |
. |
denotes |
. |
| T14856 |
34069-34210 |
sentence |
denotes |
These DNA fragments were assembled by conventional cloning with the neomycin and DT (diphtheria toxin) cassettes, as described in Figure 1A. |
| T14857 |
34070-34075 |
DT |
denotes |
These |
| T14858 |
34080-34089 |
NNS |
denotes |
fragments |
| T14859 |
34076-34079 |
NN |
denotes |
DNA |
| T14860 |
34095-34104 |
VBN |
denotes |
assembled |
| T14861 |
34090-34094 |
VBD |
denotes |
were |
| T14862 |
34105-34107 |
IN |
denotes |
by |
| T14863 |
34108-34120 |
JJ |
denotes |
conventional |
| T14864 |
34121-34128 |
NN |
denotes |
cloning |
| T14865 |
34129-34133 |
IN |
denotes |
with |
| T14866 |
34134-34137 |
DT |
denotes |
the |
| T14867 |
34173-34182 |
NNS |
denotes |
cassettes |
| T14868 |
34138-34146 |
NN |
denotes |
neomycin |
| T14869 |
34147-34150 |
CC |
denotes |
and |
| T14870 |
34151-34153 |
NN |
denotes |
DT |
| T14871 |
34154-34155 |
-LRB- |
denotes |
( |
| T14872 |
34155-34165 |
NN |
denotes |
diphtheria |
| T14873 |
34166-34171 |
NN |
denotes |
toxin |
| T14874 |
34171-34172 |
-RRB- |
denotes |
) |
| T14875 |
34182-34184 |
, |
denotes |
, |
| T14876 |
34184-34186 |
IN |
denotes |
as |
| T14877 |
34187-34196 |
VBN |
denotes |
described |
| T14878 |
34197-34199 |
IN |
denotes |
in |
| T14879 |
34200-34206 |
NN |
denotes |
Figure |
| T14880 |
34207-34209 |
NN |
denotes |
1A |
| T14881 |
34209-34210 |
. |
denotes |
. |
| T14882 |
34210-34272 |
sentence |
denotes |
The construct was transfected in ES cells by electroporation. |
| T14883 |
34211-34214 |
DT |
denotes |
The |
| T14884 |
34215-34224 |
NN |
denotes |
construct |
| T14885 |
34229-34240 |
VBN |
denotes |
transfected |
| T14886 |
34225-34228 |
VBD |
denotes |
was |
| T14887 |
34241-34243 |
IN |
denotes |
in |
| T14888 |
34244-34246 |
NN |
denotes |
ES |
| T14889 |
34247-34252 |
NNS |
denotes |
cells |
| T14890 |
34253-34255 |
IN |
denotes |
by |
| T14891 |
34256-34271 |
NN |
denotes |
electroporation |
| T14892 |
34271-34272 |
. |
denotes |
. |
| T14893 |
34272-34419 |
sentence |
denotes |
We identified recombinant ES cells carrying the mutant Chaf1a tm1Ger (abbreviated Chaf1a − in the manuscript) allele by Southern blot (Figure 1A). |
| T14894 |
34273-34275 |
PRP |
denotes |
We |
| T14895 |
34276-34286 |
VBD |
denotes |
identified |
| T14896 |
34287-34298 |
JJ |
denotes |
recombinant |
| T14897 |
34302-34307 |
NNS |
denotes |
cells |
| T14898 |
34299-34301 |
NN |
denotes |
ES |
| T14899 |
34308-34316 |
VBG |
denotes |
carrying |
| T14900 |
34317-34320 |
DT |
denotes |
the |
| T14901 |
34383-34389 |
NN |
denotes |
allele |
| T14902 |
34321-34327 |
NN |
denotes |
mutant |
| T14903 |
34328-34341 |
NN |
denotes |
Chaf1a tm1Ger |
| T14904 |
34342-34343 |
-LRB- |
denotes |
( |
| T14905 |
34343-34354 |
VBN |
denotes |
abbreviated |
| T14906 |
34355-34361 |
NN |
denotes |
Chaf1a |
| T14907 |
34362-34363 |
SYM |
denotes |
− |
| T14908 |
34364-34366 |
IN |
denotes |
in |
| T14909 |
34367-34370 |
DT |
denotes |
the |
| T14910 |
34371-34381 |
NN |
denotes |
manuscript |
| T14911 |
34381-34382 |
-RRB- |
denotes |
) |
| T14912 |
34390-34392 |
IN |
denotes |
by |
| T14913 |
34393-34401 |
NNP |
denotes |
Southern |
| T14914 |
34402-34406 |
NN |
denotes |
blot |
| T14915 |
34407-34408 |
-LRB- |
denotes |
( |
| T14916 |
34415-34417 |
NN |
denotes |
1A |
| T14917 |
34408-34414 |
NN |
denotes |
Figure |
| T14918 |
34417-34418 |
-RRB- |
denotes |
) |
| T14919 |
34418-34419 |
. |
denotes |
. |
| T14920 |
34419-34506 |
sentence |
denotes |
We derived Chaf1a +/− mice by injecting recombined ES cells into C57BL/6N blastocysts. |
| T14921 |
34420-34422 |
PRP |
denotes |
We |
| T14922 |
34423-34430 |
VBD |
denotes |
derived |
| T14923 |
34431-34437 |
NN |
denotes |
Chaf1a |
| T14924 |
34442-34446 |
NNS |
denotes |
mice |
| T14925 |
34438-34439 |
SYM |
denotes |
+ |
| T14926 |
34439-34440 |
HYPH |
denotes |
/ |
| T14927 |
34440-34441 |
SYM |
denotes |
− |
| T14928 |
34447-34449 |
IN |
denotes |
by |
| T14929 |
34450-34459 |
VBG |
denotes |
injecting |
| T14930 |
34460-34470 |
VBN |
denotes |
recombined |
| T14931 |
34474-34479 |
NNS |
denotes |
cells |
| T14932 |
34471-34473 |
NN |
denotes |
ES |
| T14933 |
34480-34484 |
IN |
denotes |
into |
| T14934 |
34485-34490 |
NN |
denotes |
C57BL |
| T14935 |
34491-34493 |
NN |
denotes |
6N |
| T14936 |
34490-34491 |
HYPH |
denotes |
/ |
| T14937 |
34494-34505 |
NNS |
denotes |
blastocysts |
| T14938 |
34505-34506 |
. |
denotes |
. |
| T14939 |
34506-34609 |
sentence |
denotes |
E4 embryos obtained from the intercross of Chaf1a +/− mice were genotyped by nested-PCR amplification. |
| T14940 |
34507-34509 |
NN |
denotes |
E4 |
| T14941 |
34510-34517 |
NNS |
denotes |
embryos |
| T14942 |
34571-34580 |
VBN |
denotes |
genotyped |
| T14943 |
34518-34526 |
VBN |
denotes |
obtained |
| T14944 |
34527-34531 |
IN |
denotes |
from |
| T14945 |
34532-34535 |
DT |
denotes |
the |
| T14946 |
34536-34546 |
NN |
denotes |
intercross |
| T14947 |
34547-34549 |
IN |
denotes |
of |
| T14948 |
34550-34556 |
NN |
denotes |
Chaf1a |
| T14949 |
34561-34565 |
NNS |
denotes |
mice |
| T14950 |
34557-34558 |
SYM |
denotes |
+ |
| T14951 |
34558-34559 |
HYPH |
denotes |
/ |
| T14952 |
34559-34560 |
SYM |
denotes |
− |
| T14953 |
34566-34570 |
VBD |
denotes |
were |
| T14954 |
34581-34583 |
IN |
denotes |
by |
| T14955 |
34584-34590 |
NN |
denotes |
nested |
| T14956 |
34591-34594 |
NN |
denotes |
PCR |
| T14957 |
34590-34591 |
HYPH |
denotes |
- |
| T14958 |
34595-34608 |
NN |
denotes |
amplification |
| T14959 |
34608-34609 |
. |
denotes |
. |
| T14960 |
34609-34760 |
sentence |
denotes |
Embryos were collected in a PCR reaction mix containing oligonucleotide primers 1, 2, and 3 (Figure 1A) that amplify the wild-type and mutant alleles. |
| T14961 |
34610-34617 |
NNS |
denotes |
Embryos |
| T14962 |
34623-34632 |
VBN |
denotes |
collected |
| T14963 |
34618-34622 |
VBD |
denotes |
were |
| T14964 |
34633-34635 |
IN |
denotes |
in |
| T14965 |
34636-34637 |
DT |
denotes |
a |
| T14966 |
34651-34654 |
NN |
denotes |
mix |
| T14967 |
34638-34641 |
NN |
denotes |
PCR |
| T14968 |
34642-34650 |
NN |
denotes |
reaction |
| T14969 |
34655-34665 |
VBG |
denotes |
containing |
| T14970 |
34666-34681 |
NN |
denotes |
oligonucleotide |
| T14971 |
34690-34691 |
CD |
denotes |
1 |
| T14972 |
34682-34689 |
NNS |
denotes |
primers |
| T14973 |
34691-34693 |
, |
denotes |
, |
| T14974 |
34693-34694 |
CD |
denotes |
2 |
| T14975 |
34694-34696 |
, |
denotes |
, |
| T14976 |
34696-34699 |
CC |
denotes |
and |
| T14977 |
34700-34701 |
CD |
denotes |
3 |
| T14978 |
34702-34703 |
-LRB- |
denotes |
( |
| T14979 |
34710-34712 |
NN |
denotes |
1A |
| T14980 |
34703-34709 |
NN |
denotes |
Figure |
| T14981 |
34712-34713 |
-RRB- |
denotes |
) |
| T14982 |
34714-34718 |
WDT |
denotes |
that |
| T14983 |
34719-34726 |
VBP |
denotes |
amplify |
| T14984 |
34727-34730 |
DT |
denotes |
the |
| T14985 |
34752-34759 |
NNS |
denotes |
alleles |
| T14986 |
34731-34735 |
JJ |
denotes |
wild |
| T14987 |
34736-34740 |
NN |
denotes |
type |
| T14988 |
34735-34736 |
HYPH |
denotes |
- |
| T14989 |
34741-34744 |
CC |
denotes |
and |
| T14990 |
34745-34751 |
NN |
denotes |
mutant |
| T14991 |
34759-34760 |
. |
denotes |
. |
| T14992 |
34760-34911 |
sentence |
denotes |
After 30 cycles of amplification, 1 μl of each PCR reaction was used in a second round of PCR amplification with a new set of oligonucleotide primers. |
| T14993 |
34761-34766 |
IN |
denotes |
After |
| T14994 |
34825-34829 |
VBN |
denotes |
used |
| T14995 |
34767-34769 |
CD |
denotes |
30 |
| T14996 |
34770-34776 |
NNS |
denotes |
cycles |
| T14997 |
34777-34779 |
IN |
denotes |
of |
| T14998 |
34780-34793 |
NN |
denotes |
amplification |
| T14999 |
34793-34795 |
, |
denotes |
, |
| T15000 |
34795-34796 |
CD |
denotes |
1 |
| T15001 |
34797-34799 |
NN |
denotes |
μl |
| T15002 |
34800-34802 |
IN |
denotes |
of |
| T15003 |
34803-34807 |
DT |
denotes |
each |
| T15004 |
34812-34820 |
NN |
denotes |
reaction |
| T15005 |
34808-34811 |
NN |
denotes |
PCR |
| T15006 |
34821-34824 |
VBD |
denotes |
was |
| T15007 |
34830-34832 |
IN |
denotes |
in |
| T15008 |
34833-34834 |
DT |
denotes |
a |
| T15009 |
34842-34847 |
NN |
denotes |
round |
| T15010 |
34835-34841 |
JJ |
denotes |
second |
| T15011 |
34848-34850 |
IN |
denotes |
of |
| T15012 |
34851-34854 |
NN |
denotes |
PCR |
| T15013 |
34855-34868 |
NN |
denotes |
amplification |
| T15014 |
34869-34873 |
IN |
denotes |
with |
| T15015 |
34874-34875 |
DT |
denotes |
a |
| T15016 |
34880-34883 |
NN |
denotes |
set |
| T15017 |
34876-34879 |
JJ |
denotes |
new |
| T15018 |
34884-34886 |
IN |
denotes |
of |
| T15019 |
34887-34902 |
NN |
denotes |
oligonucleotide |
| T15020 |
34903-34910 |
NNS |
denotes |
primers |
| T15021 |
34910-34911 |
. |
denotes |
. |
| T15022 |
34911-35077 |
sentence |
denotes |
After 30 cycles of amplification, PCR reactions were run onto an agarose gel, which revealed the presence of the wild-type (150 bp) and recombinant (200 bp) alleles. |
| T15023 |
34912-34917 |
IN |
denotes |
After |
| T15024 |
34965-34968 |
VBN |
denotes |
run |
| T15025 |
34918-34920 |
CD |
denotes |
30 |
| T15026 |
34921-34927 |
NNS |
denotes |
cycles |
| T15027 |
34928-34930 |
IN |
denotes |
of |
| T15028 |
34931-34944 |
NN |
denotes |
amplification |
| T15029 |
34944-34946 |
, |
denotes |
, |
| T15030 |
34946-34949 |
NN |
denotes |
PCR |
| T15031 |
34950-34959 |
NNS |
denotes |
reactions |
| T15032 |
34960-34964 |
VBD |
denotes |
were |
| T15033 |
34969-34973 |
IN |
denotes |
onto |
| T15034 |
34974-34976 |
DT |
denotes |
an |
| T15035 |
34985-34988 |
NN |
denotes |
gel |
| T15036 |
34977-34984 |
NN |
denotes |
agarose |
| T15037 |
34988-34990 |
, |
denotes |
, |
| T15038 |
34990-34995 |
WDT |
denotes |
which |
| T15039 |
34996-35004 |
VBD |
denotes |
revealed |
| T15040 |
35005-35008 |
DT |
denotes |
the |
| T15041 |
35009-35017 |
NN |
denotes |
presence |
| T15042 |
35018-35020 |
IN |
denotes |
of |
| T15043 |
35021-35024 |
DT |
denotes |
the |
| T15044 |
35069-35076 |
NNS |
denotes |
alleles |
| T15045 |
35025-35029 |
JJ |
denotes |
wild |
| T15046 |
35030-35034 |
NN |
denotes |
type |
| T15047 |
35029-35030 |
HYPH |
denotes |
- |
| T15048 |
35035-35036 |
-LRB- |
denotes |
( |
| T15049 |
35040-35042 |
NN |
denotes |
bp |
| T15050 |
35036-35039 |
CD |
denotes |
150 |
| T15051 |
35042-35043 |
-RRB- |
denotes |
) |
| T15052 |
35044-35047 |
CC |
denotes |
and |
| T15053 |
35048-35059 |
NN |
denotes |
recombinant |
| T15054 |
35060-35061 |
-LRB- |
denotes |
( |
| T15055 |
35065-35067 |
NN |
denotes |
bp |
| T15056 |
35061-35064 |
CD |
denotes |
200 |
| T15057 |
35067-35068 |
-RRB- |
denotes |
) |
| T15058 |
35076-35077 |
. |
denotes |
. |
| T15693 |
35079-35086 |
NN |
denotes |
P150CAF |
| T15694 |
35089-35098 |
NN |
denotes |
depletion |
| T15695 |
35086-35087 |
HYPH |
denotes |
- |
| T15696 |
35087-35088 |
CD |
denotes |
1 |
| T15697 |
35099-35101 |
IN |
denotes |
by |
| T15698 |
35102-35106 |
NN |
denotes |
RNAi |
| T15699 |
35106-35107 |
. |
denotes |
. |
| T15700 |
35107-35251 |
sentence |
denotes |
The RNAi plasmid vector that we used in this study contains the mouse H1 promoter and a puromycin selection gene (SB and MG, unpublished data). |
| T15701 |
35108-35111 |
DT |
denotes |
The |
| T15702 |
35125-35131 |
NN |
denotes |
vector |
| T15703 |
35112-35116 |
NN |
denotes |
RNAi |
| T15704 |
35117-35124 |
NN |
denotes |
plasmid |
| T15705 |
35159-35167 |
VBZ |
denotes |
contains |
| T15706 |
35132-35136 |
WDT |
denotes |
that |
| T15707 |
35140-35144 |
VBD |
denotes |
used |
| T15708 |
35137-35139 |
PRP |
denotes |
we |
| T15709 |
35145-35147 |
IN |
denotes |
in |
| T15710 |
35148-35152 |
DT |
denotes |
this |
| T15711 |
35153-35158 |
NN |
denotes |
study |
| T15712 |
35168-35171 |
DT |
denotes |
the |
| T15713 |
35181-35189 |
NN |
denotes |
promoter |
| T15714 |
35172-35177 |
NN |
denotes |
mouse |
| T15715 |
35178-35180 |
NN |
denotes |
H1 |
| T15716 |
35190-35193 |
CC |
denotes |
and |
| T15717 |
35194-35195 |
DT |
denotes |
a |
| T15718 |
35216-35220 |
NN |
denotes |
gene |
| T15719 |
35196-35205 |
NN |
denotes |
puromycin |
| T15720 |
35206-35215 |
NN |
denotes |
selection |
| T15721 |
35221-35222 |
-LRB- |
denotes |
( |
| T15722 |
35245-35249 |
NNS |
denotes |
data |
| T15723 |
35222-35224 |
NN |
denotes |
SB |
| T15724 |
35225-35228 |
CC |
denotes |
and |
| T15725 |
35229-35231 |
NN |
denotes |
MG |
| T15726 |
35231-35233 |
, |
denotes |
, |
| T15727 |
35233-35244 |
JJ |
denotes |
unpublished |
| T15728 |
35249-35250 |
-RRB- |
denotes |
) |
| T15729 |
35250-35251 |
. |
denotes |
. |
| T15730 |
35251-35517 |
sentence |
denotes |
We characterized in detail the properties of this new vector using a GFP target gene and FACS: Extinction of target genes in ES cells is highly efficient in 70% of the cells, of intermediate efficiency in 15%, and inefficient in the remaining 15% of cells analysis. |
| T15731 |
35252-35254 |
PRP |
denotes |
We |
| T15732 |
35255-35268 |
VBD |
denotes |
characterized |
| T15733 |
35386-35388 |
VBZ |
denotes |
is |
| T15734 |
35269-35271 |
IN |
denotes |
in |
| T15735 |
35272-35278 |
NN |
denotes |
detail |
| T15736 |
35279-35282 |
DT |
denotes |
the |
| T15737 |
35283-35293 |
NNS |
denotes |
properties |
| T15738 |
35294-35296 |
IN |
denotes |
of |
| T15739 |
35297-35301 |
DT |
denotes |
this |
| T15740 |
35306-35312 |
NN |
denotes |
vector |
| T15741 |
35302-35305 |
JJ |
denotes |
new |
| T15742 |
35313-35318 |
VBG |
denotes |
using |
| T15743 |
35319-35320 |
DT |
denotes |
a |
| T15744 |
35332-35336 |
NN |
denotes |
gene |
| T15745 |
35321-35324 |
NN |
denotes |
GFP |
| T15746 |
35325-35331 |
NN |
denotes |
target |
| T15747 |
35337-35340 |
CC |
denotes |
and |
| T15748 |
35341-35345 |
NN |
denotes |
FACS |
| T15749 |
35345-35347 |
: |
denotes |
: |
| T15750 |
35347-35357 |
NN |
denotes |
Extinction |
| T15751 |
35358-35360 |
IN |
denotes |
of |
| T15752 |
35361-35367 |
NN |
denotes |
target |
| T15753 |
35368-35373 |
NNS |
denotes |
genes |
| T15754 |
35374-35376 |
IN |
denotes |
in |
| T15755 |
35377-35379 |
NN |
denotes |
ES |
| T15756 |
35380-35385 |
NNS |
denotes |
cells |
| T15757 |
35389-35395 |
RB |
denotes |
highly |
| T15758 |
35396-35405 |
JJ |
denotes |
efficient |
| T15759 |
35406-35408 |
IN |
denotes |
in |
| T15760 |
35409-35411 |
CD |
denotes |
70 |
| T15761 |
35411-35412 |
NN |
denotes |
% |
| T15762 |
35413-35415 |
IN |
denotes |
of |
| T15763 |
35416-35419 |
DT |
denotes |
the |
| T15764 |
35420-35425 |
NNS |
denotes |
cells |
| T15765 |
35425-35427 |
, |
denotes |
, |
| T15766 |
35427-35429 |
IN |
denotes |
of |
| T15767 |
35430-35442 |
JJ |
denotes |
intermediate |
| T15768 |
35443-35453 |
NN |
denotes |
efficiency |
| T15769 |
35454-35456 |
IN |
denotes |
in |
| T15770 |
35457-35459 |
CD |
denotes |
15 |
| T15771 |
35459-35460 |
NN |
denotes |
% |
| T15772 |
35460-35462 |
, |
denotes |
, |
| T15773 |
35462-35465 |
CC |
denotes |
and |
| T15774 |
35466-35477 |
JJ |
denotes |
inefficient |
| T15775 |
35478-35480 |
IN |
denotes |
in |
| T15776 |
35481-35484 |
DT |
denotes |
the |
| T15777 |
35497-35498 |
NN |
denotes |
% |
| T15778 |
35485-35494 |
VBG |
denotes |
remaining |
| T15779 |
35495-35497 |
CD |
denotes |
15 |
| T15780 |
35499-35501 |
IN |
denotes |
of |
| T15781 |
35502-35507 |
NNS |
denotes |
cells |
| T15782 |
35508-35516 |
NN |
denotes |
analysis |
| T15783 |
35516-35517 |
. |
denotes |
. |
| T15784 |
35517-35615 |
sentence |
denotes |
The sequence of p150CAF-1 siRNA (short interfering RNA) duplex [16] was cloned into this plasmid. |
| T15785 |
35518-35521 |
DT |
denotes |
The |
| T15786 |
35522-35530 |
NN |
denotes |
sequence |
| T15787 |
35590-35596 |
VBN |
denotes |
cloned |
| T15788 |
35531-35533 |
IN |
denotes |
of |
| T15789 |
35534-35541 |
NN |
denotes |
p150CAF |
| T15790 |
35574-35580 |
NN |
denotes |
duplex |
| T15791 |
35541-35542 |
HYPH |
denotes |
- |
| T15792 |
35542-35543 |
CD |
denotes |
1 |
| T15793 |
35544-35549 |
NN |
denotes |
siRNA |
| T15794 |
35550-35551 |
-LRB- |
denotes |
( |
| T15795 |
35551-35556 |
JJ |
denotes |
short |
| T15796 |
35569-35572 |
NN |
denotes |
RNA |
| T15797 |
35557-35568 |
VBG |
denotes |
interfering |
| T15798 |
35572-35573 |
-RRB- |
denotes |
) |
| T15799 |
35581-35582 |
-LRB- |
denotes |
[ |
| T15800 |
35582-35584 |
CD |
denotes |
16 |
| T15801 |
35584-35585 |
-RRB- |
denotes |
] |
| T15802 |
35586-35589 |
VBD |
denotes |
was |
| T15803 |
35597-35601 |
IN |
denotes |
into |
| T15804 |
35602-35606 |
DT |
denotes |
this |
| T15805 |
35607-35614 |
NN |
denotes |
plasmid |
| T15806 |
35614-35615 |
. |
denotes |
. |
| T15807 |
35615-35686 |
sentence |
denotes |
The control vector expressed a siRNA that targets GFP RNA degradation. |
| T15808 |
35616-35619 |
DT |
denotes |
The |
| T15809 |
35628-35634 |
NN |
denotes |
vector |
| T15810 |
35620-35627 |
NN |
denotes |
control |
| T15811 |
35635-35644 |
VBD |
denotes |
expressed |
| T15812 |
35645-35646 |
DT |
denotes |
a |
| T15813 |
35647-35652 |
NN |
denotes |
siRNA |
| T15814 |
35653-35657 |
WDT |
denotes |
that |
| T15815 |
35658-35665 |
VBZ |
denotes |
targets |
| T15816 |
35666-35669 |
NN |
denotes |
GFP |
| T15817 |
35674-35685 |
NN |
denotes |
degradation |
| T15818 |
35670-35673 |
NN |
denotes |
RNA |
| T15819 |
35685-35686 |
. |
denotes |
. |
| T15820 |
35686-35846 |
sentence |
denotes |
ES cells were transfected by electroporation with the RNA plasmid vector, seeded onto gelatin-coated slides, and cultured for 24 h in the absence of selection. |
| T15821 |
35687-35689 |
NN |
denotes |
ES |
| T15822 |
35690-35695 |
NNS |
denotes |
cells |
| T15823 |
35701-35712 |
VBN |
denotes |
transfected |
| T15824 |
35696-35700 |
VBD |
denotes |
were |
| T15825 |
35713-35715 |
IN |
denotes |
by |
| T15826 |
35716-35731 |
NN |
denotes |
electroporation |
| T15827 |
35732-35736 |
IN |
denotes |
with |
| T15828 |
35737-35740 |
DT |
denotes |
the |
| T15829 |
35753-35759 |
NN |
denotes |
vector |
| T15830 |
35741-35744 |
NN |
denotes |
RNA |
| T15831 |
35745-35752 |
NN |
denotes |
plasmid |
| T15832 |
35759-35761 |
, |
denotes |
, |
| T15833 |
35761-35767 |
VBN |
denotes |
seeded |
| T15834 |
35768-35772 |
IN |
denotes |
onto |
| T15835 |
35773-35780 |
NN |
denotes |
gelatin |
| T15836 |
35781-35787 |
VBN |
denotes |
coated |
| T15837 |
35780-35781 |
HYPH |
denotes |
- |
| T15838 |
35788-35794 |
NNS |
denotes |
slides |
| T15839 |
35794-35796 |
, |
denotes |
, |
| T15840 |
35796-35799 |
CC |
denotes |
and |
| T15841 |
35800-35808 |
VBN |
denotes |
cultured |
| T15842 |
35809-35812 |
IN |
denotes |
for |
| T15843 |
35813-35815 |
CD |
denotes |
24 |
| T15844 |
35816-35817 |
NN |
denotes |
h |
| T15845 |
35818-35820 |
IN |
denotes |
in |
| T15846 |
35821-35824 |
DT |
denotes |
the |
| T15847 |
35825-35832 |
NN |
denotes |
absence |
| T15848 |
35833-35835 |
IN |
denotes |
of |
| T15849 |
35836-35845 |
NN |
denotes |
selection |
| T15850 |
35845-35846 |
. |
denotes |
. |
| T15851 |
35846-35953 |
sentence |
denotes |
Puromycin (2 μg/ml) was added to the culture medium and cells were cultured for an additional 48-h period. |
| T15852 |
35847-35856 |
NN |
denotes |
Puromycin |
| T15853 |
35871-35876 |
VBN |
denotes |
added |
| T15854 |
35857-35858 |
-LRB- |
denotes |
( |
| T15855 |
35860-35862 |
NN |
denotes |
μg |
| T15856 |
35858-35859 |
CD |
denotes |
2 |
| T15857 |
35862-35863 |
SYM |
denotes |
/ |
| T15858 |
35863-35865 |
NN |
denotes |
ml |
| T15859 |
35865-35866 |
-RRB- |
denotes |
) |
| T15860 |
35867-35870 |
VBD |
denotes |
was |
| T15861 |
35877-35879 |
IN |
denotes |
to |
| T15862 |
35880-35883 |
DT |
denotes |
the |
| T15863 |
35892-35898 |
NN |
denotes |
medium |
| T15864 |
35884-35891 |
NN |
denotes |
culture |
| T15865 |
35899-35902 |
CC |
denotes |
and |
| T15866 |
35903-35908 |
NNS |
denotes |
cells |
| T15867 |
35914-35922 |
VBN |
denotes |
cultured |
| T15868 |
35909-35913 |
VBD |
denotes |
were |
| T15869 |
35923-35926 |
IN |
denotes |
for |
| T15870 |
35927-35929 |
DT |
denotes |
an |
| T15871 |
35946-35952 |
NN |
denotes |
period |
| T15872 |
35930-35940 |
JJ |
denotes |
additional |
| T15873 |
35941-35943 |
CD |
denotes |
48 |
| T15874 |
35944-35945 |
NN |
denotes |
h |
| T15875 |
35943-35944 |
HYPH |
denotes |
- |
| T15876 |
35952-35953 |
. |
denotes |
. |
| T15877 |
35953-36078 |
sentence |
denotes |
Using the p150CAF-1 RNAi vector, IF microscopy quantification reveals a complete CAF-1 depletion in most cells (Figure S1B). |
| T15878 |
35954-35959 |
VBG |
denotes |
Using |
| T15879 |
36016-36023 |
VBZ |
denotes |
reveals |
| T15880 |
35960-35963 |
DT |
denotes |
the |
| T15881 |
35979-35985 |
NN |
denotes |
vector |
| T15882 |
35964-35971 |
NN |
denotes |
p150CAF |
| T15883 |
35971-35972 |
HYPH |
denotes |
- |
| T15884 |
35972-35973 |
CD |
denotes |
1 |
| T15885 |
35974-35978 |
NN |
denotes |
RNAi |
| T15886 |
35985-35987 |
, |
denotes |
, |
| T15887 |
35987-35989 |
NN |
denotes |
IF |
| T15888 |
35990-36000 |
NN |
denotes |
microscopy |
| T15889 |
36001-36015 |
NN |
denotes |
quantification |
| T15890 |
36024-36025 |
DT |
denotes |
a |
| T15891 |
36041-36050 |
NN |
denotes |
depletion |
| T15892 |
36026-36034 |
JJ |
denotes |
complete |
| T15893 |
36035-36038 |
NN |
denotes |
CAF |
| T15894 |
36038-36039 |
HYPH |
denotes |
- |
| T15895 |
36039-36040 |
CD |
denotes |
1 |
| T15896 |
36051-36053 |
IN |
denotes |
in |
| T15897 |
36054-36058 |
JJS |
denotes |
most |
| T15898 |
36059-36064 |
NNS |
denotes |
cells |
| T15899 |
36065-36066 |
-LRB- |
denotes |
( |
| T15900 |
36073-36076 |
NN |
denotes |
S1B |
| T15901 |
36066-36072 |
NN |
denotes |
Figure |
| T15902 |
36076-36077 |
-RRB- |
denotes |
) |
| T15903 |
36077-36078 |
. |
denotes |
. |
| T15904 |
36078-36223 |
sentence |
denotes |
Western blot analysis (Figure S1A) reveals residual p150CAF-1 expression, as expected from the 15% of cells that do not inhibit the target gene. |
| T15905 |
36079-36086 |
NNP |
denotes |
Western |
| T15906 |
36087-36091 |
NN |
denotes |
blot |
| T15907 |
36092-36100 |
NN |
denotes |
analysis |
| T15908 |
36114-36121 |
VBZ |
denotes |
reveals |
| T15909 |
36101-36102 |
-LRB- |
denotes |
( |
| T15910 |
36109-36112 |
NN |
denotes |
S1A |
| T15911 |
36102-36108 |
NN |
denotes |
Figure |
| T15912 |
36112-36113 |
-RRB- |
denotes |
) |
| T15913 |
36122-36130 |
JJ |
denotes |
residual |
| T15914 |
36141-36151 |
NN |
denotes |
expression |
| T15915 |
36131-36138 |
NN |
denotes |
p150CAF |
| T15916 |
36138-36139 |
HYPH |
denotes |
- |
| T15917 |
36139-36140 |
CD |
denotes |
1 |
| T15918 |
36151-36153 |
, |
denotes |
, |
| T15919 |
36153-36155 |
IN |
denotes |
as |
| T15920 |
36156-36164 |
VBN |
denotes |
expected |
| T15921 |
36165-36169 |
IN |
denotes |
from |
| T15922 |
36170-36173 |
DT |
denotes |
the |
| T15923 |
36176-36177 |
NN |
denotes |
% |
| T15924 |
36174-36176 |
CD |
denotes |
15 |
| T15925 |
36178-36180 |
IN |
denotes |
of |
| T15926 |
36181-36186 |
NNS |
denotes |
cells |
| T15927 |
36187-36191 |
WDT |
denotes |
that |
| T15928 |
36199-36206 |
VB |
denotes |
inhibit |
| T15929 |
36192-36194 |
VBP |
denotes |
do |
| T15930 |
36195-36198 |
RB |
denotes |
not |
| T15931 |
36207-36210 |
DT |
denotes |
the |
| T15932 |
36218-36222 |
NN |
denotes |
gene |
| T15933 |
36211-36217 |
NN |
denotes |
target |
| T15934 |
36222-36223 |
. |
denotes |
. |
| T15935 |
36223-36429 |
sentence |
denotes |
MEFs (passage 3, 90% confluence) were transfected during 4 h with the RNAi plasmid vector using Lipofectamine 2000 (Invitrogene, Carlsbad, California, United States) according to manufacturer's conditions. |
| T15936 |
36224-36228 |
NNS |
denotes |
MEFs |
| T15937 |
36262-36273 |
VBN |
denotes |
transfected |
| T15938 |
36229-36230 |
-LRB- |
denotes |
( |
| T15939 |
36230-36237 |
NN |
denotes |
passage |
| T15940 |
36238-36239 |
CD |
denotes |
3 |
| T15941 |
36239-36241 |
, |
denotes |
, |
| T15942 |
36241-36243 |
CD |
denotes |
90 |
| T15943 |
36243-36244 |
NN |
denotes |
% |
| T15944 |
36245-36255 |
NN |
denotes |
confluence |
| T15945 |
36255-36256 |
-RRB- |
denotes |
) |
| T15946 |
36257-36261 |
VBD |
denotes |
were |
| T15947 |
36274-36280 |
IN |
denotes |
during |
| T15948 |
36281-36282 |
CD |
denotes |
4 |
| T15949 |
36283-36284 |
NN |
denotes |
h |
| T15950 |
36285-36289 |
IN |
denotes |
with |
| T15951 |
36290-36293 |
DT |
denotes |
the |
| T15952 |
36307-36313 |
NN |
denotes |
vector |
| T15953 |
36294-36298 |
NN |
denotes |
RNAi |
| T15954 |
36299-36306 |
NN |
denotes |
plasmid |
| T15955 |
36314-36319 |
VBG |
denotes |
using |
| T15956 |
36320-36333 |
NNP |
denotes |
Lipofectamine |
| T15957 |
36334-36338 |
CD |
denotes |
2000 |
| T15958 |
36339-36340 |
-LRB- |
denotes |
( |
| T15959 |
36340-36351 |
NNP |
denotes |
Invitrogene |
| T15960 |
36351-36353 |
, |
denotes |
, |
| T15961 |
36353-36361 |
NNP |
denotes |
Carlsbad |
| T15962 |
36361-36363 |
, |
denotes |
, |
| T15963 |
36363-36373 |
NNP |
denotes |
California |
| T15964 |
36373-36375 |
, |
denotes |
, |
| T15965 |
36375-36381 |
NNP |
denotes |
United |
| T15966 |
36382-36388 |
NNP |
denotes |
States |
| T15967 |
36388-36389 |
-RRB- |
denotes |
) |
| T15968 |
36390-36399 |
VBG |
denotes |
according |
| T15969 |
36400-36402 |
IN |
denotes |
to |
| T15970 |
36403-36415 |
NN |
denotes |
manufacturer |
| T15971 |
36418-36428 |
NNS |
denotes |
conditions |
| T15972 |
36415-36417 |
POS |
denotes |
's |
| T15973 |
36428-36429 |
. |
denotes |
. |
| T15974 |
36429-36529 |
sentence |
denotes |
Cells were trypsinized, plated at 1/3 dilution, and cultured for 48 h in the presence of puromycin. |
| T15975 |
36430-36435 |
NNS |
denotes |
Cells |
| T15976 |
36441-36452 |
VBN |
denotes |
trypsinized |
| T15977 |
36436-36440 |
VBD |
denotes |
were |
| T15978 |
36452-36454 |
, |
denotes |
, |
| T15979 |
36454-36460 |
VBN |
denotes |
plated |
| T15980 |
36461-36463 |
IN |
denotes |
at |
| T15981 |
36464-36465 |
CD |
denotes |
1 |
| T15982 |
36466-36467 |
CD |
denotes |
3 |
| T15983 |
36465-36466 |
SYM |
denotes |
/ |
| T15984 |
36468-36476 |
NN |
denotes |
dilution |
| T15985 |
36476-36478 |
, |
denotes |
, |
| T15986 |
36478-36481 |
CC |
denotes |
and |
| T15987 |
36482-36490 |
VBN |
denotes |
cultured |
| T15988 |
36491-36494 |
IN |
denotes |
for |
| T15989 |
36495-36497 |
CD |
denotes |
48 |
| T15990 |
36498-36499 |
NN |
denotes |
h |
| T15991 |
36500-36502 |
IN |
denotes |
in |
| T15992 |
36503-36506 |
DT |
denotes |
the |
| T15993 |
36507-36515 |
NN |
denotes |
presence |
| T15994 |
36516-36518 |
IN |
denotes |
of |
| T15995 |
36519-36528 |
NN |
denotes |
puromycin |
| T15996 |
36528-36529 |
. |
denotes |
. |
| T16173 |
36531-36535 |
NN |
denotes |
Cell |
| T16174 |
36536-36541 |
NNS |
denotes |
lines |
| T16175 |
36541-36542 |
. |
denotes |
. |
| T16176 |
36542-36613 |
sentence |
denotes |
AT-1 ES cells [42] (a gift of M. Vernet) were used for gene targeting. |
| T16177 |
36543-36545 |
NN |
denotes |
AT |
| T16178 |
36551-36556 |
NNS |
denotes |
cells |
| T16179 |
36545-36546 |
HYPH |
denotes |
- |
| T16180 |
36546-36547 |
CD |
denotes |
1 |
| T16181 |
36548-36550 |
NN |
denotes |
ES |
| T16182 |
36589-36593 |
VBN |
denotes |
used |
| T16183 |
36557-36558 |
-LRB- |
denotes |
[ |
| T16184 |
36558-36560 |
CD |
denotes |
42 |
| T16185 |
36560-36561 |
-RRB- |
denotes |
] |
| T16186 |
36562-36563 |
-LRB- |
denotes |
( |
| T16187 |
36565-36569 |
NN |
denotes |
gift |
| T16188 |
36563-36564 |
DT |
denotes |
a |
| T16189 |
36570-36572 |
IN |
denotes |
of |
| T16190 |
36573-36575 |
NNP |
denotes |
M. |
| T16191 |
36576-36582 |
NNP |
denotes |
Vernet |
| T16192 |
36582-36583 |
-RRB- |
denotes |
) |
| T16193 |
36584-36588 |
VBD |
denotes |
were |
| T16194 |
36594-36597 |
IN |
denotes |
for |
| T16195 |
36598-36602 |
NN |
denotes |
gene |
| T16196 |
36603-36612 |
NN |
denotes |
targeting |
| T16197 |
36612-36613 |
. |
denotes |
. |
| T16198 |
36613-36662 |
sentence |
denotes |
LTM7 ES cells were used in all RNAi experiments. |
| T16199 |
36614-36618 |
NN |
denotes |
LTM7 |
| T16200 |
36622-36627 |
NNS |
denotes |
cells |
| T16201 |
36619-36621 |
NN |
denotes |
ES |
| T16202 |
36633-36637 |
VBN |
denotes |
used |
| T16203 |
36628-36632 |
VBD |
denotes |
were |
| T16204 |
36638-36640 |
IN |
denotes |
in |
| T16205 |
36641-36644 |
DT |
denotes |
all |
| T16206 |
36650-36661 |
NNS |
denotes |
experiments |
| T16207 |
36645-36649 |
NN |
denotes |
RNAi |
| T16208 |
36661-36662 |
. |
denotes |
. |
| T16209 |
36662-36745 |
sentence |
denotes |
We derived this cell line from (C57BL/6 × 129) F1 females bred with C3H/HeJ males. |
| T16210 |
36663-36665 |
PRP |
denotes |
We |
| T16211 |
36666-36673 |
VBD |
denotes |
derived |
| T16212 |
36674-36678 |
DT |
denotes |
this |
| T16213 |
36684-36688 |
NN |
denotes |
line |
| T16214 |
36679-36683 |
NN |
denotes |
cell |
| T16215 |
36689-36693 |
IN |
denotes |
from |
| T16216 |
36694-36695 |
-LRB- |
denotes |
( |
| T16217 |
36695-36700 |
NN |
denotes |
C57BL |
| T16218 |
36713-36720 |
NNS |
denotes |
females |
| T16219 |
36700-36701 |
HYPH |
denotes |
/ |
| T16220 |
36701-36702 |
CD |
denotes |
6 |
| T16221 |
36703-36704 |
SYM |
denotes |
× |
| T16222 |
36705-36708 |
CD |
denotes |
129 |
| T16223 |
36708-36709 |
-RRB- |
denotes |
) |
| T16224 |
36710-36712 |
NN |
denotes |
F1 |
| T16225 |
36721-36725 |
VBN |
denotes |
bred |
| T16226 |
36726-36730 |
IN |
denotes |
with |
| T16227 |
36731-36734 |
NN |
denotes |
C3H |
| T16228 |
36735-36738 |
NN |
denotes |
HeJ |
| T16229 |
36734-36735 |
HYPH |
denotes |
/ |
| T16230 |
36739-36744 |
NNS |
denotes |
males |
| T16231 |
36744-36745 |
. |
denotes |
. |
| T16232 |
36745-36805 |
sentence |
denotes |
LTM7 are XX ES cells, competent for germ line transmission. |
| T16233 |
36746-36750 |
NN |
denotes |
LTM7 |
| T16234 |
36751-36754 |
VBP |
denotes |
are |
| T16235 |
36755-36757 |
NN |
denotes |
XX |
| T16236 |
36761-36766 |
NNS |
denotes |
cells |
| T16237 |
36758-36760 |
NN |
denotes |
ES |
| T16238 |
36766-36768 |
, |
denotes |
, |
| T16239 |
36768-36777 |
JJ |
denotes |
competent |
| T16240 |
36778-36781 |
IN |
denotes |
for |
| T16241 |
36782-36786 |
NN |
denotes |
germ |
| T16242 |
36787-36791 |
NN |
denotes |
line |
| T16243 |
36792-36804 |
NN |
denotes |
transmission |
| T16244 |
36804-36805 |
. |
denotes |
. |
| T16245 |
36805-36870 |
sentence |
denotes |
Primary MEFs were derived from E13 embryos as described in [43]. |
| T16246 |
36806-36813 |
JJ |
denotes |
Primary |
| T16247 |
36814-36818 |
NNS |
denotes |
MEFs |
| T16248 |
36824-36831 |
VBN |
denotes |
derived |
| T16249 |
36819-36823 |
VBD |
denotes |
were |
| T16250 |
36832-36836 |
IN |
denotes |
from |
| T16251 |
36837-36840 |
NN |
denotes |
E13 |
| T16252 |
36841-36848 |
NNS |
denotes |
embryos |
| T16253 |
36849-36851 |
IN |
denotes |
as |
| T16254 |
36852-36861 |
VBN |
denotes |
described |
| T16255 |
36862-36864 |
IN |
denotes |
in |
| T16256 |
36865-36866 |
-LRB- |
denotes |
[ |
| T16257 |
36866-36868 |
CD |
denotes |
43 |
| T16258 |
36868-36869 |
-RRB- |
denotes |
] |
| T16259 |
36869-36870 |
. |
denotes |
. |
| T16587 |
36872-36890 |
NN |
denotes |
Immunofluorescence |
| T16588 |
36890-36891 |
. |
denotes |
. |
| T16589 |
36891-37016 |
sentence |
denotes |
Cells were fixed for 20 min in PBS with 4% paraformaldehyde, and immunodetection was performed as previously described [44]. |
| T16590 |
36892-36897 |
NNS |
denotes |
Cells |
| T16591 |
36903-36908 |
VBN |
denotes |
fixed |
| T16592 |
36898-36902 |
VBD |
denotes |
were |
| T16593 |
36909-36912 |
IN |
denotes |
for |
| T16594 |
36913-36915 |
CD |
denotes |
20 |
| T16595 |
36916-36919 |
NN |
denotes |
min |
| T16596 |
36920-36922 |
IN |
denotes |
in |
| T16597 |
36923-36926 |
NN |
denotes |
PBS |
| T16598 |
36927-36931 |
IN |
denotes |
with |
| T16599 |
36932-36933 |
CD |
denotes |
4 |
| T16600 |
36933-36934 |
NN |
denotes |
% |
| T16601 |
36935-36951 |
NN |
denotes |
paraformaldehyde |
| T16602 |
36951-36953 |
, |
denotes |
, |
| T16603 |
36953-36956 |
CC |
denotes |
and |
| T16604 |
36957-36972 |
NN |
denotes |
immunodetection |
| T16605 |
36977-36986 |
VBN |
denotes |
performed |
| T16606 |
36973-36976 |
VBD |
denotes |
was |
| T16607 |
36987-36989 |
IN |
denotes |
as |
| T16608 |
37001-37010 |
VBN |
denotes |
described |
| T16609 |
36990-37000 |
RB |
denotes |
previously |
| T16610 |
37011-37012 |
-LRB- |
denotes |
[ |
| T16611 |
37012-37014 |
CD |
denotes |
44 |
| T16612 |
37014-37015 |
-RRB- |
denotes |
] |
| T16613 |
37015-37016 |
. |
denotes |
. |
| T16614 |
37016-37195 |
sentence |
denotes |
E4 embryos were collected and treated with tyrode acid to remove the zona pellucida, deposited onto microscope slides, and processed for immunostaining as described for ES cells. |
| T16615 |
37017-37019 |
NN |
denotes |
E4 |
| T16616 |
37020-37027 |
NNS |
denotes |
embryos |
| T16617 |
37033-37042 |
VBN |
denotes |
collected |
| T16618 |
37028-37032 |
VBD |
denotes |
were |
| T16619 |
37043-37046 |
CC |
denotes |
and |
| T16620 |
37047-37054 |
VBN |
denotes |
treated |
| T16621 |
37055-37059 |
IN |
denotes |
with |
| T16622 |
37060-37066 |
NN |
denotes |
tyrode |
| T16623 |
37067-37071 |
NN |
denotes |
acid |
| T16624 |
37072-37074 |
TO |
denotes |
to |
| T16625 |
37075-37081 |
VB |
denotes |
remove |
| T16626 |
37082-37085 |
DT |
denotes |
the |
| T16627 |
37091-37100 |
NN |
denotes |
pellucida |
| T16628 |
37086-37090 |
NN |
denotes |
zona |
| T16629 |
37100-37102 |
, |
denotes |
, |
| T16630 |
37102-37111 |
VBN |
denotes |
deposited |
| T16631 |
37112-37116 |
IN |
denotes |
onto |
| T16632 |
37117-37127 |
NN |
denotes |
microscope |
| T16633 |
37128-37134 |
NNS |
denotes |
slides |
| T16634 |
37134-37136 |
, |
denotes |
, |
| T16635 |
37136-37139 |
CC |
denotes |
and |
| T16636 |
37140-37149 |
VBN |
denotes |
processed |
| T16637 |
37150-37153 |
IN |
denotes |
for |
| T16638 |
37154-37168 |
NN |
denotes |
immunostaining |
| T16639 |
37169-37171 |
IN |
denotes |
as |
| T16640 |
37172-37181 |
VBN |
denotes |
described |
| T16641 |
37182-37185 |
IN |
denotes |
for |
| T16642 |
37186-37188 |
NN |
denotes |
ES |
| T16643 |
37189-37194 |
NNS |
denotes |
cells |
| T16644 |
37194-37195 |
. |
denotes |
. |
| T16645 |
37195-37479 |
sentence |
denotes |
Antibodies anti-HP1α (2HP1H5, Euromedex, France), anti-H4K20me3 (Abcam, Cambridge, United Kingdom), anti-BrdU (DakoCytomation, Glostrup, Denmark), anti-PCNA (DakoCytomation), and anti-PML (Upstate Biotechnology, Lake Placid, New York, United States) were all used at 1/1000 dilution. |
| T16646 |
37196-37206 |
NNS |
denotes |
Antibodies |
| T16647 |
37455-37459 |
VBN |
denotes |
used |
| T16648 |
37207-37216 |
JJ |
denotes |
anti-HP1α |
| T16649 |
37217-37218 |
-LRB- |
denotes |
( |
| T16650 |
37218-37224 |
NN |
denotes |
2HP1H5 |
| T16651 |
37224-37226 |
, |
denotes |
, |
| T16652 |
37226-37235 |
NNP |
denotes |
Euromedex |
| T16653 |
37235-37237 |
, |
denotes |
, |
| T16654 |
37237-37243 |
NNP |
denotes |
France |
| T16655 |
37243-37244 |
-RRB- |
denotes |
) |
| T16656 |
37244-37246 |
, |
denotes |
, |
| T16657 |
37246-37259 |
JJ |
denotes |
anti-H4K20me3 |
| T16658 |
37260-37261 |
-LRB- |
denotes |
( |
| T16659 |
37261-37266 |
NNP |
denotes |
Abcam |
| T16660 |
37266-37268 |
, |
denotes |
, |
| T16661 |
37268-37277 |
NNP |
denotes |
Cambridge |
| T16662 |
37277-37279 |
, |
denotes |
, |
| T16663 |
37279-37285 |
NNP |
denotes |
United |
| T16664 |
37286-37293 |
NNP |
denotes |
Kingdom |
| T16665 |
37293-37294 |
-RRB- |
denotes |
) |
| T16666 |
37294-37296 |
, |
denotes |
, |
| T16667 |
37296-37305 |
JJ |
denotes |
anti-BrdU |
| T16668 |
37306-37307 |
-LRB- |
denotes |
( |
| T16669 |
37307-37321 |
NNP |
denotes |
DakoCytomation |
| T16670 |
37321-37323 |
, |
denotes |
, |
| T16671 |
37323-37331 |
NNP |
denotes |
Glostrup |
| T16672 |
37331-37333 |
, |
denotes |
, |
| T16673 |
37333-37340 |
NNP |
denotes |
Denmark |
| T16674 |
37340-37341 |
-RRB- |
denotes |
) |
| T16675 |
37341-37343 |
, |
denotes |
, |
| T16676 |
37343-37352 |
JJ |
denotes |
anti-PCNA |
| T16677 |
37353-37354 |
-LRB- |
denotes |
( |
| T16678 |
37354-37368 |
NNP |
denotes |
DakoCytomation |
| T16679 |
37368-37369 |
-RRB- |
denotes |
) |
| T16680 |
37369-37371 |
, |
denotes |
, |
| T16681 |
37371-37374 |
CC |
denotes |
and |
| T16682 |
37375-37383 |
JJ |
denotes |
anti-PML |
| T16683 |
37384-37385 |
-LRB- |
denotes |
( |
| T16684 |
37393-37406 |
NNP |
denotes |
Biotechnology |
| T16685 |
37385-37392 |
NNP |
denotes |
Upstate |
| T16686 |
37406-37408 |
, |
denotes |
, |
| T16687 |
37408-37412 |
NNP |
denotes |
Lake |
| T16688 |
37413-37419 |
NNP |
denotes |
Placid |
| T16689 |
37419-37421 |
, |
denotes |
, |
| T16690 |
37421-37424 |
NNP |
denotes |
New |
| T16691 |
37425-37429 |
NNP |
denotes |
York |
| T16692 |
37429-37431 |
, |
denotes |
, |
| T16693 |
37431-37437 |
NNP |
denotes |
United |
| T16694 |
37438-37444 |
NNP |
denotes |
States |
| T16695 |
37444-37445 |
-RRB- |
denotes |
) |
| T16696 |
37446-37450 |
VBD |
denotes |
were |
| T16697 |
37451-37454 |
RB |
denotes |
all |
| T16698 |
37460-37462 |
IN |
denotes |
at |
| T16699 |
37463-37464 |
CD |
denotes |
1 |
| T16700 |
37470-37478 |
NN |
denotes |
dilution |
| T16701 |
37464-37465 |
SYM |
denotes |
/ |
| T16702 |
37465-37469 |
CD |
denotes |
1000 |
| T16703 |
37478-37479 |
. |
denotes |
. |
| T16704 |
37479-37600 |
sentence |
denotes |
Antibodies anti-mouse p150CAF1 [16] and anti-H3K9me3 (Upstate Biotechnology) were used at 1/250 and 1/500, respectively. |
| T16705 |
37480-37490 |
NNS |
denotes |
Antibodies |
| T16706 |
37502-37510 |
NN |
denotes |
p150CAF1 |
| T16707 |
37491-37501 |
JJ |
denotes |
anti-mouse |
| T16708 |
37562-37566 |
VBN |
denotes |
used |
| T16709 |
37511-37512 |
-LRB- |
denotes |
[ |
| T16710 |
37512-37514 |
CD |
denotes |
16 |
| T16711 |
37514-37515 |
-RRB- |
denotes |
] |
| T16712 |
37516-37519 |
CC |
denotes |
and |
| T16713 |
37520-37532 |
NN |
denotes |
anti-H3K9me3 |
| T16714 |
37533-37534 |
-LRB- |
denotes |
( |
| T16715 |
37542-37555 |
NNP |
denotes |
Biotechnology |
| T16716 |
37534-37541 |
NNP |
denotes |
Upstate |
| T16717 |
37555-37556 |
-RRB- |
denotes |
) |
| T16718 |
37557-37561 |
VBD |
denotes |
were |
| T16719 |
37567-37569 |
IN |
denotes |
at |
| T16720 |
37570-37571 |
CD |
denotes |
1 |
| T16721 |
37571-37572 |
SYM |
denotes |
/ |
| T16722 |
37572-37575 |
CD |
denotes |
250 |
| T16723 |
37576-37579 |
CC |
denotes |
and |
| T16724 |
37580-37581 |
CD |
denotes |
1 |
| T16725 |
37581-37582 |
SYM |
denotes |
/ |
| T16726 |
37582-37585 |
CD |
denotes |
500 |
| T16727 |
37585-37587 |
, |
denotes |
, |
| T16728 |
37587-37599 |
RB |
denotes |
respectively |
| T16729 |
37599-37600 |
. |
denotes |
. |
| T16730 |
37600-37702 |
sentence |
denotes |
All secondary antibodies were purchased from Molecular Probes (Sunnyvale, California, United States). |
| T16731 |
37601-37604 |
DT |
denotes |
All |
| T16732 |
37615-37625 |
NNS |
denotes |
antibodies |
| T16733 |
37605-37614 |
JJ |
denotes |
secondary |
| T16734 |
37631-37640 |
VBN |
denotes |
purchased |
| T16735 |
37626-37630 |
VBD |
denotes |
were |
| T16736 |
37641-37645 |
IN |
denotes |
from |
| T16737 |
37646-37655 |
NNP |
denotes |
Molecular |
| T16738 |
37656-37662 |
NNP |
denotes |
Probes |
| T16739 |
37663-37664 |
-LRB- |
denotes |
( |
| T16740 |
37664-37673 |
NNP |
denotes |
Sunnyvale |
| T16741 |
37673-37675 |
, |
denotes |
, |
| T16742 |
37675-37685 |
NNP |
denotes |
California |
| T16743 |
37685-37687 |
, |
denotes |
, |
| T16744 |
37687-37693 |
NNP |
denotes |
United |
| T16745 |
37694-37700 |
NNP |
denotes |
States |
| T16746 |
37700-37701 |
-RRB- |
denotes |
) |
| T16747 |
37701-37702 |
. |
denotes |
. |
| T16924 |
37704-37711 |
NNP |
denotes |
Western |
| T16925 |
37712-37716 |
NN |
denotes |
blot |
| T16926 |
37717-37725 |
NN |
denotes |
analysis |
| T16927 |
37725-37726 |
. |
denotes |
. |
| T16928 |
37726-37805 |
sentence |
denotes |
Cells were lysed in Laemli buffer and run onto a 4%–12% SDS PAGE gradient gel. |
| T16929 |
37727-37732 |
NNS |
denotes |
Cells |
| T16930 |
37738-37743 |
VBN |
denotes |
lysed |
| T16931 |
37733-37737 |
VBD |
denotes |
were |
| T16932 |
37744-37746 |
IN |
denotes |
in |
| T16933 |
37747-37753 |
NNP |
denotes |
Laemli |
| T16934 |
37754-37760 |
NN |
denotes |
buffer |
| T16935 |
37761-37764 |
CC |
denotes |
and |
| T16936 |
37765-37768 |
VBP |
denotes |
run |
| T16937 |
37769-37773 |
IN |
denotes |
onto |
| T16938 |
37774-37775 |
DT |
denotes |
a |
| T16939 |
37801-37804 |
NN |
denotes |
gel |
| T16940 |
37776-37777 |
CD |
denotes |
4 |
| T16941 |
37777-37778 |
NN |
denotes |
% |
| T16942 |
37778-37779 |
SYM |
denotes |
– |
| T16943 |
37781-37782 |
NN |
denotes |
% |
| T16944 |
37779-37781 |
CD |
denotes |
12 |
| T16945 |
37783-37786 |
NN |
denotes |
SDS |
| T16946 |
37787-37791 |
NN |
denotes |
PAGE |
| T16947 |
37792-37800 |
NN |
denotes |
gradient |
| T16948 |
37804-37805 |
. |
denotes |
. |
| T16949 |
37805-37981 |
sentence |
denotes |
We used antibodies against p150CAF-1 ([16]; dilution 1/500), HP1α (2G9, Euromedex; 1/500), Histone H3 (Abcam; 1/500), H3K9me3 (Upstate; 1/500) and β-actin (Upstate; 1/40 000). |
| T16950 |
37806-37808 |
PRP |
denotes |
We |
| T16951 |
37809-37813 |
VBD |
denotes |
used |
| T16952 |
37814-37824 |
NNS |
denotes |
antibodies |
| T16953 |
37825-37832 |
IN |
denotes |
against |
| T16954 |
37833-37840 |
NN |
denotes |
p150CAF |
| T16955 |
37840-37841 |
HYPH |
denotes |
- |
| T16956 |
37841-37842 |
CD |
denotes |
1 |
| T16957 |
37843-37844 |
-LRB- |
denotes |
( |
| T16958 |
37850-37858 |
NN |
denotes |
dilution |
| T16959 |
37844-37845 |
-LRB- |
denotes |
[ |
| T16960 |
37845-37847 |
CD |
denotes |
16 |
| T16961 |
37847-37848 |
-RRB- |
denotes |
] |
| T16962 |
37848-37849 |
: |
denotes |
; |
| T16963 |
37859-37860 |
CD |
denotes |
1 |
| T16964 |
37860-37861 |
SYM |
denotes |
/ |
| T16965 |
37861-37864 |
CD |
denotes |
500 |
| T16966 |
37864-37865 |
-RRB- |
denotes |
) |
| T16967 |
37865-37867 |
, |
denotes |
, |
| T16968 |
37867-37871 |
NN |
denotes |
HP1α |
| T16969 |
37872-37873 |
-LRB- |
denotes |
( |
| T16970 |
37889-37890 |
CD |
denotes |
1 |
| T16971 |
37873-37876 |
NN |
denotes |
2G9 |
| T16972 |
37876-37878 |
, |
denotes |
, |
| T16973 |
37878-37887 |
NNP |
denotes |
Euromedex |
| T16974 |
37887-37888 |
: |
denotes |
; |
| T16975 |
37890-37891 |
SYM |
denotes |
/ |
| T16976 |
37891-37894 |
CD |
denotes |
500 |
| T16977 |
37894-37895 |
-RRB- |
denotes |
) |
| T16978 |
37895-37897 |
, |
denotes |
, |
| T16979 |
37897-37904 |
NN |
denotes |
Histone |
| T16980 |
37905-37907 |
NN |
denotes |
H3 |
| T16981 |
37908-37909 |
-LRB- |
denotes |
( |
| T16982 |
37916-37917 |
CD |
denotes |
1 |
| T16983 |
37909-37914 |
NN |
denotes |
Abcam |
| T16984 |
37914-37915 |
: |
denotes |
; |
| T16985 |
37917-37918 |
SYM |
denotes |
/ |
| T16986 |
37918-37921 |
CD |
denotes |
500 |
| T16987 |
37921-37922 |
-RRB- |
denotes |
) |
| T16988 |
37922-37924 |
, |
denotes |
, |
| T16989 |
37924-37931 |
NN |
denotes |
H3K9me3 |
| T16990 |
37932-37933 |
-LRB- |
denotes |
( |
| T16991 |
37942-37943 |
CD |
denotes |
1 |
| T16992 |
37933-37940 |
NNP |
denotes |
Upstate |
| T16993 |
37940-37941 |
: |
denotes |
; |
| T16994 |
37943-37944 |
SYM |
denotes |
/ |
| T16995 |
37944-37947 |
CD |
denotes |
500 |
| T16996 |
37947-37948 |
-RRB- |
denotes |
) |
| T16997 |
37949-37952 |
CC |
denotes |
and |
| T16998 |
37953-37954 |
NN |
denotes |
β |
| T16999 |
37955-37960 |
NN |
denotes |
actin |
| T17000 |
37954-37955 |
HYPH |
denotes |
- |
| T17001 |
37961-37962 |
-LRB- |
denotes |
( |
| T17002 |
37971-37972 |
CD |
denotes |
1 |
| T17003 |
37962-37969 |
NNP |
denotes |
Upstate |
| T17004 |
37969-37970 |
: |
denotes |
; |
| T17005 |
37972-37973 |
SYM |
denotes |
/ |
| T17006 |
37976-37979 |
CD |
denotes |
000 |
| T17007 |
37973-37975 |
CD |
denotes |
40 |
| T17008 |
37979-37980 |
-RRB- |
denotes |
) |
| T17009 |
37980-37981 |
. |
denotes |
. |
| T17171 |
37983-37986 |
NN |
denotes |
DNA |
| T17172 |
37987-37991 |
NN |
denotes |
FISH |
| T17173 |
37991-37992 |
. |
denotes |
. |
| T17174 |
37992-38031 |
sentence |
denotes |
Probes were described previously [20]. |
| T17175 |
37993-37999 |
NNS |
denotes |
Probes |
| T17176 |
38005-38014 |
VBN |
denotes |
described |
| T17177 |
38000-38004 |
VBD |
denotes |
were |
| T17178 |
38015-38025 |
RB |
denotes |
previously |
| T17179 |
38026-38027 |
-LRB- |
denotes |
[ |
| T17180 |
38027-38029 |
CD |
denotes |
20 |
| T17181 |
38029-38030 |
-RRB- |
denotes |
] |
| T17182 |
38030-38031 |
. |
denotes |
. |
| T17183 |
38031-38193 |
sentence |
denotes |
Biotin-16-dUTP or Digoxigenin-11-dUTP (Roche, Basel, Switzerland) labeled probes were generated by nick translation (Roche) and FISH performed as described [20]. |
| T17184 |
38032-38038 |
NN |
denotes |
Biotin |
| T17185 |
38042-38046 |
NN |
denotes |
dUTP |
| T17186 |
38038-38039 |
HYPH |
denotes |
- |
| T17187 |
38039-38041 |
CD |
denotes |
16 |
| T17188 |
38041-38042 |
HYPH |
denotes |
- |
| T17189 |
38098-38105 |
VBN |
denotes |
labeled |
| T17190 |
38047-38049 |
CC |
denotes |
or |
| T17191 |
38050-38061 |
NN |
denotes |
Digoxigenin |
| T17192 |
38065-38069 |
NN |
denotes |
dUTP |
| T17193 |
38061-38062 |
HYPH |
denotes |
- |
| T17194 |
38062-38064 |
CD |
denotes |
11 |
| T17195 |
38064-38065 |
HYPH |
denotes |
- |
| T17196 |
38070-38071 |
-LRB- |
denotes |
( |
| T17197 |
38071-38076 |
NNP |
denotes |
Roche |
| T17198 |
38076-38078 |
, |
denotes |
, |
| T17199 |
38078-38083 |
NNP |
denotes |
Basel |
| T17200 |
38083-38085 |
, |
denotes |
, |
| T17201 |
38085-38096 |
NNP |
denotes |
Switzerland |
| T17202 |
38096-38097 |
-RRB- |
denotes |
) |
| T17203 |
38106-38112 |
NNS |
denotes |
probes |
| T17204 |
38118-38127 |
VBN |
denotes |
generated |
| T17205 |
38113-38117 |
VBD |
denotes |
were |
| T17206 |
38128-38130 |
IN |
denotes |
by |
| T17207 |
38131-38135 |
NN |
denotes |
nick |
| T17208 |
38136-38147 |
NN |
denotes |
translation |
| T17209 |
38148-38149 |
-LRB- |
denotes |
( |
| T17210 |
38149-38154 |
NNP |
denotes |
Roche |
| T17211 |
38154-38155 |
-RRB- |
denotes |
) |
| T17212 |
38156-38159 |
CC |
denotes |
and |
| T17213 |
38160-38164 |
NN |
denotes |
FISH |
| T17214 |
38165-38174 |
VBN |
denotes |
performed |
| T17215 |
38175-38177 |
IN |
denotes |
as |
| T17216 |
38178-38187 |
VBN |
denotes |
described |
| T17217 |
38188-38189 |
-LRB- |
denotes |
[ |
| T17218 |
38189-38191 |
CD |
denotes |
20 |
| T17219 |
38191-38192 |
-RRB- |
denotes |
] |
| T17220 |
38192-38193 |
. |
denotes |
. |
| T17221 |
38193-38387 |
sentence |
denotes |
Image acquisition was performed with the Deltavision RT microscope (100×, 1.4 NA objective), images were deconvoluted, and fluorescence profiles measured along an arbitrary line using SoftWorx. |
| T17222 |
38194-38199 |
NN |
denotes |
Image |
| T17223 |
38200-38211 |
NN |
denotes |
acquisition |
| T17224 |
38216-38225 |
VBN |
denotes |
performed |
| T17225 |
38212-38215 |
VBD |
denotes |
was |
| T17226 |
38226-38230 |
IN |
denotes |
with |
| T17227 |
38231-38234 |
DT |
denotes |
the |
| T17228 |
38250-38260 |
NN |
denotes |
microscope |
| T17229 |
38235-38246 |
NNP |
denotes |
Deltavision |
| T17230 |
38247-38249 |
NN |
denotes |
RT |
| T17231 |
38261-38262 |
-LRB- |
denotes |
( |
| T17232 |
38275-38284 |
NN |
denotes |
objective |
| T17233 |
38262-38265 |
CD |
denotes |
100 |
| T17234 |
38265-38266 |
SYM |
denotes |
× |
| T17235 |
38266-38268 |
, |
denotes |
, |
| T17236 |
38268-38271 |
CD |
denotes |
1.4 |
| T17237 |
38272-38274 |
NN |
denotes |
NA |
| T17238 |
38284-38285 |
-RRB- |
denotes |
) |
| T17239 |
38285-38287 |
, |
denotes |
, |
| T17240 |
38287-38293 |
NNS |
denotes |
images |
| T17241 |
38299-38311 |
VBN |
denotes |
deconvoluted |
| T17242 |
38294-38298 |
VBD |
denotes |
were |
| T17243 |
38311-38313 |
, |
denotes |
, |
| T17244 |
38313-38316 |
CC |
denotes |
and |
| T17245 |
38317-38329 |
NN |
denotes |
fluorescence |
| T17246 |
38330-38338 |
NNS |
denotes |
profiles |
| T17247 |
38339-38347 |
VBN |
denotes |
measured |
| T17248 |
38348-38353 |
IN |
denotes |
along |
| T17249 |
38354-38356 |
DT |
denotes |
an |
| T17250 |
38367-38371 |
NN |
denotes |
line |
| T17251 |
38357-38366 |
JJ |
denotes |
arbitrary |
| T17252 |
38372-38377 |
VBG |
denotes |
using |
| T17253 |
38378-38386 |
NNP |
denotes |
SoftWorx |
| T17254 |
38386-38387 |
. |
denotes |
. |
| T17929 |
38389-38395 |
NNS |
denotes |
Nuclei |
| T17930 |
38396-38407 |
NN |
denotes |
preparation |
| T17931 |
38407-38409 |
, |
denotes |
, |
| T17932 |
38409-38417 |
NN |
denotes |
nuclease |
| T17933 |
38418-38427 |
NN |
denotes |
digestion |
| T17934 |
38427-38429 |
, |
denotes |
, |
| T17935 |
38429-38432 |
CC |
denotes |
and |
| T17936 |
38433-38444 |
JJ |
denotes |
biochemical |
| T17937 |
38445-38453 |
NN |
denotes |
analysis |
| T17938 |
38454-38456 |
IN |
denotes |
of |
| T17939 |
38457-38466 |
NN |
denotes |
chromatin |
| T17940 |
38466-38467 |
. |
denotes |
. |
| T17941 |
38467-38673 |
sentence |
denotes |
ES cells were incubated on ice for 10 min in buffer 1 (15 mM Tris-HCl [pH 7.5], 0.3 M sucrose, 60 mM KCl, 15 mM NaCl, 5 mM MgCl2, 0.1 mM EGTA) with 0.15% IGEPAL (Sigma, St. Louis, Missouri, United States). |
| T17942 |
38468-38470 |
NN |
denotes |
ES |
| T17943 |
38471-38476 |
NNS |
denotes |
cells |
| T17944 |
38482-38491 |
VBN |
denotes |
incubated |
| T17945 |
38477-38481 |
VBD |
denotes |
were |
| T17946 |
38492-38494 |
IN |
denotes |
on |
| T17947 |
38495-38498 |
NN |
denotes |
ice |
| T17948 |
38499-38502 |
IN |
denotes |
for |
| T17949 |
38503-38505 |
CD |
denotes |
10 |
| T17950 |
38506-38509 |
NN |
denotes |
min |
| T17951 |
38510-38512 |
IN |
denotes |
in |
| T17952 |
38513-38519 |
NN |
denotes |
buffer |
| T17953 |
38520-38521 |
CD |
denotes |
1 |
| T17954 |
38522-38523 |
-LRB- |
denotes |
( |
| T17955 |
38534-38537 |
NN |
denotes |
HCl |
| T17956 |
38523-38525 |
CD |
denotes |
15 |
| T17957 |
38526-38528 |
NN |
denotes |
mM |
| T17958 |
38529-38533 |
NN |
denotes |
Tris |
| T17959 |
38533-38534 |
HYPH |
denotes |
- |
| T17960 |
38538-38539 |
-LRB- |
denotes |
[ |
| T17961 |
38539-38541 |
NN |
denotes |
pH |
| T17962 |
38542-38545 |
CD |
denotes |
7.5 |
| T17963 |
38545-38546 |
-RRB- |
denotes |
] |
| T17964 |
38546-38548 |
, |
denotes |
, |
| T17965 |
38548-38551 |
CD |
denotes |
0.3 |
| T17966 |
38552-38553 |
NN |
denotes |
M |
| T17967 |
38554-38561 |
NN |
denotes |
sucrose |
| T17968 |
38561-38563 |
, |
denotes |
, |
| T17969 |
38563-38565 |
CD |
denotes |
60 |
| T17970 |
38566-38568 |
NN |
denotes |
mM |
| T17971 |
38569-38572 |
NN |
denotes |
KCl |
| T17972 |
38572-38574 |
, |
denotes |
, |
| T17973 |
38574-38576 |
CD |
denotes |
15 |
| T17974 |
38577-38579 |
NN |
denotes |
mM |
| T17975 |
38580-38584 |
NN |
denotes |
NaCl |
| T17976 |
38584-38586 |
, |
denotes |
, |
| T17977 |
38586-38587 |
CD |
denotes |
5 |
| T17978 |
38588-38590 |
NN |
denotes |
mM |
| T17979 |
38591-38596 |
NN |
denotes |
MgCl2 |
| T17980 |
38596-38598 |
, |
denotes |
, |
| T17981 |
38598-38601 |
CD |
denotes |
0.1 |
| T17982 |
38602-38604 |
NN |
denotes |
mM |
| T17983 |
38605-38609 |
NN |
denotes |
EGTA |
| T17984 |
38609-38610 |
-RRB- |
denotes |
) |
| T17985 |
38611-38615 |
IN |
denotes |
with |
| T17986 |
38616-38620 |
CD |
denotes |
0.15 |
| T17987 |
38620-38621 |
NN |
denotes |
% |
| T17988 |
38622-38628 |
NN |
denotes |
IGEPAL |
| T17989 |
38629-38630 |
-LRB- |
denotes |
( |
| T17990 |
38630-38635 |
NNP |
denotes |
Sigma |
| T17991 |
38635-38637 |
, |
denotes |
, |
| T17992 |
38637-38640 |
NNP |
denotes |
St. |
| T17993 |
38641-38646 |
NNP |
denotes |
Louis |
| T17994 |
38646-38648 |
, |
denotes |
, |
| T17995 |
38648-38656 |
NNP |
denotes |
Missouri |
| T17996 |
38656-38658 |
, |
denotes |
, |
| T17997 |
38658-38664 |
NNP |
denotes |
United |
| T17998 |
38665-38671 |
NNP |
denotes |
States |
| T17999 |
38671-38672 |
-RRB- |
denotes |
) |
| T18000 |
38672-38673 |
. |
denotes |
. |
| T18001 |
38673-38909 |
sentence |
denotes |
Nuclei were purified by centrifugation (10,000 × g for 30 min, at 4 °C) on sucrose cushions (buffer 1 with 1.2 M sucrose) and resuspended in nuclease buffer (50 mM Tris-HCl [pH 7.5], 20 mM NaCl, 0.32 M sucrose, 4 mM MgCl2, 1 mM CaCl2). |
| T18002 |
38674-38680 |
NNS |
denotes |
Nuclei |
| T18003 |
38686-38694 |
VBN |
denotes |
purified |
| T18004 |
38681-38685 |
VBD |
denotes |
were |
| T18005 |
38695-38697 |
IN |
denotes |
by |
| T18006 |
38698-38712 |
NN |
denotes |
centrifugation |
| T18007 |
38713-38714 |
-LRB- |
denotes |
( |
| T18008 |
38723-38724 |
NN |
denotes |
g |
| T18009 |
38714-38720 |
CD |
denotes |
10,000 |
| T18010 |
38721-38722 |
SYM |
denotes |
× |
| T18011 |
38725-38728 |
IN |
denotes |
for |
| T18012 |
38729-38731 |
CD |
denotes |
30 |
| T18013 |
38732-38735 |
NN |
denotes |
min |
| T18014 |
38735-38737 |
, |
denotes |
, |
| T18015 |
38737-38739 |
IN |
denotes |
at |
| T18016 |
38740-38741 |
CD |
denotes |
4 |
| T18017 |
38742-38744 |
NN |
denotes |
°C |
| T18018 |
38744-38745 |
-RRB- |
denotes |
) |
| T18019 |
38746-38748 |
IN |
denotes |
on |
| T18020 |
38749-38756 |
NN |
denotes |
sucrose |
| T18021 |
38757-38765 |
NNS |
denotes |
cushions |
| T18022 |
38766-38767 |
-LRB- |
denotes |
( |
| T18023 |
38767-38773 |
NN |
denotes |
buffer |
| T18024 |
38774-38775 |
CD |
denotes |
1 |
| T18025 |
38776-38780 |
IN |
denotes |
with |
| T18026 |
38781-38784 |
CD |
denotes |
1.2 |
| T18027 |
38785-38786 |
NN |
denotes |
M |
| T18028 |
38787-38794 |
NN |
denotes |
sucrose |
| T18029 |
38794-38795 |
-RRB- |
denotes |
) |
| T18030 |
38796-38799 |
CC |
denotes |
and |
| T18031 |
38800-38811 |
VBN |
denotes |
resuspended |
| T18032 |
38812-38814 |
IN |
denotes |
in |
| T18033 |
38815-38823 |
NN |
denotes |
nuclease |
| T18034 |
38824-38830 |
NN |
denotes |
buffer |
| T18035 |
38831-38832 |
-LRB- |
denotes |
( |
| T18036 |
38843-38846 |
NN |
denotes |
HCl |
| T18037 |
38832-38834 |
CD |
denotes |
50 |
| T18038 |
38835-38837 |
NN |
denotes |
mM |
| T18039 |
38838-38842 |
NN |
denotes |
Tris |
| T18040 |
38842-38843 |
HYPH |
denotes |
- |
| T18041 |
38847-38848 |
-LRB- |
denotes |
[ |
| T18042 |
38848-38850 |
NN |
denotes |
pH |
| T18043 |
38851-38854 |
CD |
denotes |
7.5 |
| T18044 |
38854-38855 |
-RRB- |
denotes |
] |
| T18045 |
38855-38857 |
, |
denotes |
, |
| T18046 |
38857-38859 |
CD |
denotes |
20 |
| T18047 |
38860-38862 |
NN |
denotes |
mM |
| T18048 |
38863-38867 |
NN |
denotes |
NaCl |
| T18049 |
38867-38869 |
, |
denotes |
, |
| T18050 |
38869-38873 |
CD |
denotes |
0.32 |
| T18051 |
38874-38875 |
NN |
denotes |
M |
| T18052 |
38876-38883 |
NN |
denotes |
sucrose |
| T18053 |
38883-38885 |
, |
denotes |
, |
| T18054 |
38885-38886 |
CD |
denotes |
4 |
| T18055 |
38887-38889 |
NN |
denotes |
mM |
| T18056 |
38890-38895 |
NN |
denotes |
MgCl2 |
| T18057 |
38895-38897 |
, |
denotes |
, |
| T18058 |
38897-38898 |
CD |
denotes |
1 |
| T18059 |
38899-38901 |
NN |
denotes |
mM |
| T18060 |
38902-38907 |
NN |
denotes |
CaCl2 |
| T18061 |
38907-38908 |
-RRB- |
denotes |
) |
| T18062 |
38908-38909 |
. |
denotes |
. |
| T18063 |
38909-39024 |
sentence |
denotes |
About 2.106 nuclei were incubated with increasing quantities of MNase (0.04–1.6 units) or DNase I (0.25–16 units). |
| T18064 |
38910-38915 |
IN |
denotes |
About |
| T18065 |
38916-38921 |
CD |
denotes |
2.106 |
| T18066 |
38922-38928 |
NNS |
denotes |
nuclei |
| T18067 |
38934-38943 |
VBN |
denotes |
incubated |
| T18068 |
38929-38933 |
VBD |
denotes |
were |
| T18069 |
38944-38948 |
IN |
denotes |
with |
| T18070 |
38949-38959 |
VBG |
denotes |
increasing |
| T18071 |
38960-38970 |
NNS |
denotes |
quantities |
| T18072 |
38971-38973 |
IN |
denotes |
of |
| T18073 |
38974-38979 |
NN |
denotes |
MNase |
| T18074 |
38980-38981 |
-LRB- |
denotes |
( |
| T18075 |
38990-38995 |
NNS |
denotes |
units |
| T18076 |
38981-38985 |
CD |
denotes |
0.04 |
| T18077 |
38986-38989 |
CD |
denotes |
1.6 |
| T18078 |
38985-38986 |
SYM |
denotes |
– |
| T18079 |
38995-38996 |
-RRB- |
denotes |
) |
| T18080 |
38997-38999 |
CC |
denotes |
or |
| T18081 |
39000-39005 |
NN |
denotes |
DNase |
| T18082 |
39006-39007 |
CD |
denotes |
I |
| T18083 |
39008-39009 |
-LRB- |
denotes |
( |
| T18084 |
39017-39022 |
NNS |
denotes |
units |
| T18085 |
39009-39013 |
CD |
denotes |
0.25 |
| T18086 |
39014-39016 |
CD |
denotes |
16 |
| T18087 |
39013-39014 |
SYM |
denotes |
– |
| T18088 |
39022-39023 |
-RRB- |
denotes |
) |
| T18089 |
39023-39024 |
. |
denotes |
. |
| T18090 |
39024-39092 |
sentence |
denotes |
Digestion time at 37 °C was 10 min for MNase and 2 min for DNase I. |
| T18091 |
39025-39034 |
NN |
denotes |
Digestion |
| T18092 |
39035-39039 |
NN |
denotes |
time |
| T18093 |
39049-39052 |
VBD |
denotes |
was |
| T18094 |
39040-39042 |
IN |
denotes |
at |
| T18095 |
39043-39045 |
CD |
denotes |
37 |
| T18096 |
39046-39048 |
NN |
denotes |
°C |
| T18097 |
39053-39055 |
CD |
denotes |
10 |
| T18098 |
39056-39059 |
NN |
denotes |
min |
| T18099 |
39060-39063 |
IN |
denotes |
for |
| T18100 |
39064-39069 |
NN |
denotes |
MNase |
| T18101 |
39070-39073 |
CC |
denotes |
and |
| T18102 |
39074-39075 |
CD |
denotes |
2 |
| T18103 |
39076-39079 |
NN |
denotes |
min |
| T18104 |
39080-39083 |
IN |
denotes |
for |
| T18105 |
39084-39089 |
NN |
denotes |
DNase |
| T18106 |
39090-39091 |
CD |
denotes |
I |
| T18107 |
39091-39092 |
. |
denotes |
. |
| T18108 |
39092-39155 |
sentence |
denotes |
Digestions were stopped by adding SDS to 1% and EDTA to 50 mM. |
| T18109 |
39093-39103 |
NNS |
denotes |
Digestions |
| T18110 |
39109-39116 |
VBN |
denotes |
stopped |
| T18111 |
39104-39108 |
VBD |
denotes |
were |
| T18112 |
39117-39119 |
IN |
denotes |
by |
| T18113 |
39120-39126 |
VBG |
denotes |
adding |
| T18114 |
39127-39130 |
NN |
denotes |
SDS |
| T18115 |
39131-39133 |
IN |
denotes |
to |
| T18116 |
39134-39135 |
CD |
denotes |
1 |
| T18117 |
39135-39136 |
NN |
denotes |
% |
| T18118 |
39137-39140 |
CC |
denotes |
and |
| T18119 |
39141-39145 |
NN |
denotes |
EDTA |
| T18120 |
39146-39148 |
IN |
denotes |
to |
| T18121 |
39149-39151 |
CD |
denotes |
50 |
| T18122 |
39152-39154 |
NN |
denotes |
mM |
| T18123 |
39154-39155 |
. |
denotes |
. |
| T18124 |
39155-39272 |
sentence |
denotes |
DNAs were prepared by proteinase K digestion followed by phenol-chloroform extraction and isopropanol precipitation. |
| T18125 |
39156-39160 |
NNS |
denotes |
DNAs |
| T18126 |
39166-39174 |
VBN |
denotes |
prepared |
| T18127 |
39161-39165 |
VBD |
denotes |
were |
| T18128 |
39175-39177 |
IN |
denotes |
by |
| T18129 |
39178-39188 |
NN |
denotes |
proteinase |
| T18130 |
39189-39190 |
NN |
denotes |
K |
| T18131 |
39191-39200 |
NN |
denotes |
digestion |
| T18132 |
39201-39209 |
VBN |
denotes |
followed |
| T18133 |
39210-39212 |
IN |
denotes |
by |
| T18134 |
39213-39219 |
NN |
denotes |
phenol |
| T18135 |
39220-39230 |
NN |
denotes |
chloroform |
| T18136 |
39219-39220 |
HYPH |
denotes |
- |
| T18137 |
39231-39241 |
NN |
denotes |
extraction |
| T18138 |
39242-39245 |
CC |
denotes |
and |
| T18139 |
39246-39257 |
NN |
denotes |
isopropanol |
| T18140 |
39258-39271 |
NN |
denotes |
precipitation |
| T18141 |
39271-39272 |
. |
denotes |
. |
| T18142 |
39272-39575 |
sentence |
denotes |
To test the association of histone H3 with chromatin in control and p150-depleted cells, isolated nuclei were incubated on ice for 30 min in buffer 2 (50 mM Hepes [pH7.9], 20% Glycerol, 3 mM MgCl2, 0.1% IGEPAL, 0.5 mM DTT, 0.5 mM PMSF) supplemented with either 0.1 M, 0.3 M, 0.45 M, 0.7 M, or 1 M NaCl. |
| T18143 |
39273-39275 |
TO |
denotes |
To |
| T18144 |
39276-39280 |
VB |
denotes |
test |
| T18145 |
39383-39392 |
VBN |
denotes |
incubated |
| T18146 |
39281-39284 |
DT |
denotes |
the |
| T18147 |
39285-39296 |
NN |
denotes |
association |
| T18148 |
39297-39299 |
IN |
denotes |
of |
| T18149 |
39300-39307 |
NN |
denotes |
histone |
| T18150 |
39308-39310 |
NN |
denotes |
H3 |
| T18151 |
39311-39315 |
IN |
denotes |
with |
| T18152 |
39316-39325 |
NN |
denotes |
chromatin |
| T18153 |
39326-39328 |
IN |
denotes |
in |
| T18154 |
39329-39336 |
NN |
denotes |
control |
| T18155 |
39355-39360 |
NNS |
denotes |
cells |
| T18156 |
39337-39340 |
CC |
denotes |
and |
| T18157 |
39341-39345 |
NN |
denotes |
p150 |
| T18158 |
39346-39354 |
VBN |
denotes |
depleted |
| T18159 |
39345-39346 |
HYPH |
denotes |
- |
| T18160 |
39360-39362 |
, |
denotes |
, |
| T18161 |
39362-39370 |
VBN |
denotes |
isolated |
| T18162 |
39371-39377 |
NNS |
denotes |
nuclei |
| T18163 |
39378-39382 |
VBD |
denotes |
were |
| T18164 |
39393-39395 |
IN |
denotes |
on |
| T18165 |
39396-39399 |
NN |
denotes |
ice |
| T18166 |
39400-39403 |
IN |
denotes |
for |
| T18167 |
39404-39406 |
CD |
denotes |
30 |
| T18168 |
39407-39410 |
NN |
denotes |
min |
| T18169 |
39411-39413 |
IN |
denotes |
in |
| T18170 |
39414-39420 |
NN |
denotes |
buffer |
| T18171 |
39421-39422 |
CD |
denotes |
2 |
| T18172 |
39423-39424 |
-LRB- |
denotes |
( |
| T18173 |
39430-39435 |
NN |
denotes |
Hepes |
| T18174 |
39424-39426 |
CD |
denotes |
50 |
| T18175 |
39427-39429 |
NN |
denotes |
mM |
| T18176 |
39436-39437 |
-LRB- |
denotes |
[ |
| T18177 |
39437-39442 |
NN |
denotes |
pH7.9 |
| T18178 |
39442-39443 |
-RRB- |
denotes |
] |
| T18179 |
39443-39445 |
, |
denotes |
, |
| T18180 |
39445-39447 |
CD |
denotes |
20 |
| T18181 |
39447-39448 |
NN |
denotes |
% |
| T18182 |
39449-39457 |
NN |
denotes |
Glycerol |
| T18183 |
39457-39459 |
, |
denotes |
, |
| T18184 |
39459-39460 |
CD |
denotes |
3 |
| T18185 |
39461-39463 |
NN |
denotes |
mM |
| T18186 |
39464-39469 |
NN |
denotes |
MgCl2 |
| T18187 |
39469-39471 |
, |
denotes |
, |
| T18188 |
39471-39474 |
CD |
denotes |
0.1 |
| T18189 |
39474-39475 |
NN |
denotes |
% |
| T18190 |
39476-39482 |
NN |
denotes |
IGEPAL |
| T18191 |
39482-39484 |
, |
denotes |
, |
| T18192 |
39484-39487 |
CD |
denotes |
0.5 |
| T18193 |
39488-39490 |
NN |
denotes |
mM |
| T18194 |
39491-39494 |
NN |
denotes |
DTT |
| T18195 |
39494-39496 |
, |
denotes |
, |
| T18196 |
39496-39499 |
CD |
denotes |
0.5 |
| T18197 |
39500-39502 |
NN |
denotes |
mM |
| T18198 |
39503-39507 |
NN |
denotes |
PMSF |
| T18199 |
39507-39508 |
-RRB- |
denotes |
) |
| T18200 |
39509-39521 |
VBN |
denotes |
supplemented |
| T18201 |
39522-39526 |
IN |
denotes |
with |
| T18202 |
39527-39533 |
CC |
denotes |
either |
| T18203 |
39538-39539 |
NN |
denotes |
M |
| T18204 |
39534-39537 |
CD |
denotes |
0.1 |
| T18205 |
39570-39574 |
NN |
denotes |
NaCl |
| T18206 |
39539-39541 |
, |
denotes |
, |
| T18207 |
39541-39544 |
CD |
denotes |
0.3 |
| T18208 |
39545-39546 |
NN |
denotes |
M |
| T18209 |
39546-39548 |
, |
denotes |
, |
| T18210 |
39548-39552 |
CD |
denotes |
0.45 |
| T18211 |
39553-39554 |
NN |
denotes |
M |
| T18212 |
39554-39556 |
, |
denotes |
, |
| T18213 |
39556-39559 |
CD |
denotes |
0.7 |
| T18214 |
39560-39561 |
NN |
denotes |
M |
| T18215 |
39561-39563 |
, |
denotes |
, |
| T18216 |
39563-39565 |
CC |
denotes |
or |
| T18217 |
39566-39567 |
CD |
denotes |
1 |
| T18218 |
39568-39569 |
NN |
denotes |
M |
| T18219 |
39574-39575 |
. |
denotes |
. |
| T18220 |
39575-39699 |
sentence |
denotes |
After centrifugation at 15,000 g, pellets and supernants were analyzed by Western blot using a histone H3 antibody (Abcam). |
| T18221 |
39576-39581 |
IN |
denotes |
After |
| T18222 |
39638-39646 |
VBN |
denotes |
analyzed |
| T18223 |
39582-39596 |
NN |
denotes |
centrifugation |
| T18224 |
39597-39599 |
IN |
denotes |
at |
| T18225 |
39600-39606 |
CD |
denotes |
15,000 |
| T18226 |
39607-39608 |
NN |
denotes |
g |
| T18227 |
39608-39610 |
, |
denotes |
, |
| T18228 |
39610-39617 |
NNS |
denotes |
pellets |
| T18229 |
39618-39621 |
CC |
denotes |
and |
| T18230 |
39622-39632 |
NNS |
denotes |
supernants |
| T18231 |
39633-39637 |
VBD |
denotes |
were |
| T18232 |
39647-39649 |
IN |
denotes |
by |
| T18233 |
39650-39657 |
NNP |
denotes |
Western |
| T18234 |
39658-39662 |
NN |
denotes |
blot |
| T18235 |
39663-39668 |
VBG |
denotes |
using |
| T18236 |
39669-39670 |
DT |
denotes |
a |
| T18237 |
39682-39690 |
NN |
denotes |
antibody |
| T18238 |
39671-39678 |
NN |
denotes |
histone |
| T18239 |
39679-39681 |
NN |
denotes |
H3 |
| T18240 |
39691-39692 |
-LRB- |
denotes |
( |
| T18241 |
39692-39697 |
NNP |
denotes |
Abcam |
| T18242 |
39697-39698 |
-RRB- |
denotes |
) |
| T18243 |
39698-39699 |
. |
denotes |
. |
| T18631 |
39701-39705 |
NN |
denotes |
ChIP |
| T18632 |
39705-39706 |
. |
denotes |
. |
| T18633 |
39706-39800 |
sentence |
denotes |
We prepared native chromatin fragments of two to six nucleosomes in length as described [28]. |
| T18634 |
39707-39709 |
PRP |
denotes |
We |
| T18635 |
39710-39718 |
VBD |
denotes |
prepared |
| T18636 |
39719-39725 |
JJ |
denotes |
native |
| T18637 |
39736-39745 |
NNS |
denotes |
fragments |
| T18638 |
39726-39735 |
NN |
denotes |
chromatin |
| T18639 |
39746-39748 |
IN |
denotes |
of |
| T18640 |
39749-39752 |
CD |
denotes |
two |
| T18641 |
39756-39759 |
CD |
denotes |
six |
| T18642 |
39753-39755 |
IN |
denotes |
to |
| T18643 |
39760-39771 |
NNS |
denotes |
nucleosomes |
| T18644 |
39772-39774 |
IN |
denotes |
in |
| T18645 |
39775-39781 |
NN |
denotes |
length |
| T18646 |
39782-39784 |
IN |
denotes |
as |
| T18647 |
39785-39794 |
VBN |
denotes |
described |
| T18648 |
39795-39796 |
-LRB- |
denotes |
[ |
| T18649 |
39796-39798 |
CD |
denotes |
28 |
| T18650 |
39798-39799 |
-RRB- |
denotes |
] |
| T18651 |
39799-39800 |
. |
denotes |
. |
| T18652 |
39800-39880 |
sentence |
denotes |
5 μg of chromatin were incubated overnight with 10 μl of commercial antibodies. |
| T18653 |
39801-39802 |
CD |
denotes |
5 |
| T18654 |
39803-39805 |
NN |
denotes |
μg |
| T18655 |
39824-39833 |
VBN |
denotes |
incubated |
| T18656 |
39806-39808 |
IN |
denotes |
of |
| T18657 |
39809-39818 |
NN |
denotes |
chromatin |
| T18658 |
39819-39823 |
VBD |
denotes |
were |
| T18659 |
39834-39843 |
RB |
denotes |
overnight |
| T18660 |
39844-39848 |
IN |
denotes |
with |
| T18661 |
39849-39851 |
CD |
denotes |
10 |
| T18662 |
39852-39854 |
NN |
denotes |
μl |
| T18663 |
39855-39857 |
IN |
denotes |
of |
| T18664 |
39858-39868 |
JJ |
denotes |
commercial |
| T18665 |
39869-39879 |
NNS |
denotes |
antibodies |
| T18666 |
39879-39880 |
. |
denotes |
. |
| T18667 |
39880-40035 |
sentence |
denotes |
After incubation with protein-G sepharose and three washes, immunoprecipitated DNA was purified, sized onto an agarose gel, and analyzed by Southern blot. |
| T18668 |
39881-39886 |
IN |
denotes |
After |
| T18669 |
39968-39976 |
VBN |
denotes |
purified |
| T18670 |
39887-39897 |
NN |
denotes |
incubation |
| T18671 |
39898-39902 |
IN |
denotes |
with |
| T18672 |
39903-39910 |
NN |
denotes |
protein |
| T18673 |
39911-39912 |
NN |
denotes |
G |
| T18674 |
39910-39911 |
HYPH |
denotes |
- |
| T18675 |
39913-39922 |
NN |
denotes |
sepharose |
| T18676 |
39923-39926 |
CC |
denotes |
and |
| T18677 |
39927-39932 |
CD |
denotes |
three |
| T18678 |
39933-39939 |
NNS |
denotes |
washes |
| T18679 |
39939-39941 |
, |
denotes |
, |
| T18680 |
39941-39959 |
VBN |
denotes |
immunoprecipitated |
| T18681 |
39960-39963 |
NN |
denotes |
DNA |
| T18682 |
39964-39967 |
VBD |
denotes |
was |
| T18683 |
39976-39978 |
, |
denotes |
, |
| T18684 |
39978-39983 |
VBN |
denotes |
sized |
| T18685 |
39984-39988 |
IN |
denotes |
onto |
| T18686 |
39989-39991 |
DT |
denotes |
an |
| T18687 |
40000-40003 |
NN |
denotes |
gel |
| T18688 |
39992-39999 |
NN |
denotes |
agarose |
| T18689 |
40003-40005 |
, |
denotes |
, |
| T18690 |
40005-40008 |
CC |
denotes |
and |
| T18691 |
40009-40017 |
VBN |
denotes |
analyzed |
| T18692 |
40018-40020 |
IN |
denotes |
by |
| T18693 |
40021-40029 |
NNP |
denotes |
Southern |
| T18694 |
40030-40034 |
NN |
denotes |
blot |
| T18695 |
40034-40035 |
. |
denotes |
. |
| T18696 |
40035-40150 |
sentence |
denotes |
Hybridization signals were quantified using an Instant Imager (PerkinElmer, Wellesley, California, United States). |
| T18697 |
40036-40049 |
NN |
denotes |
Hybridization |
| T18698 |
40050-40057 |
NNS |
denotes |
signals |
| T18699 |
40063-40073 |
VBN |
denotes |
quantified |
| T18700 |
40058-40062 |
VBD |
denotes |
were |
| T18701 |
40074-40079 |
VBG |
denotes |
using |
| T18702 |
40080-40082 |
DT |
denotes |
an |
| T18703 |
40091-40097 |
NNP |
denotes |
Imager |
| T18704 |
40083-40090 |
NNP |
denotes |
Instant |
| T18705 |
40098-40099 |
-LRB- |
denotes |
( |
| T18706 |
40099-40110 |
NNP |
denotes |
PerkinElmer |
| T18707 |
40110-40112 |
, |
denotes |
, |
| T18708 |
40112-40121 |
NNP |
denotes |
Wellesley |
| T18709 |
40121-40123 |
, |
denotes |
, |
| T18710 |
40123-40133 |
NNP |
denotes |
California |
| T18711 |
40133-40135 |
, |
denotes |
, |
| T18712 |
40135-40141 |
NNP |
denotes |
United |
| T18713 |
40142-40148 |
NNP |
denotes |
States |
| T18714 |
40148-40149 |
-RRB- |
denotes |
) |
| T18715 |
40149-40150 |
. |
denotes |
. |
| T18716 |
40150-40210 |
sentence |
denotes |
Antibodies specific for H4K20me3 were purchased from Abcam. |
| T18717 |
40151-40161 |
NNS |
denotes |
Antibodies |
| T18718 |
40189-40198 |
VBN |
denotes |
purchased |
| T18719 |
40162-40170 |
JJ |
denotes |
specific |
| T18720 |
40171-40174 |
IN |
denotes |
for |
| T18721 |
40175-40183 |
NN |
denotes |
H4K20me3 |
| T18722 |
40184-40188 |
VBD |
denotes |
were |
| T18723 |
40199-40203 |
IN |
denotes |
from |
| T18724 |
40204-40209 |
NNP |
denotes |
Abcam |
| T18725 |
40209-40210 |
. |
denotes |
. |
| T18726 |
40210-40316 |
sentence |
denotes |
Antibodies for H3K9me3 were purchased from both Abcam and Upstate Biotechnology and gave similar results. |
| T18727 |
40211-40221 |
NNS |
denotes |
Antibodies |
| T18728 |
40239-40248 |
VBN |
denotes |
purchased |
| T18729 |
40222-40225 |
IN |
denotes |
for |
| T18730 |
40226-40233 |
NN |
denotes |
H3K9me3 |
| T18731 |
40234-40238 |
VBD |
denotes |
were |
| T18732 |
40249-40253 |
IN |
denotes |
from |
| T18733 |
40254-40258 |
CC |
denotes |
both |
| T18734 |
40259-40264 |
NNP |
denotes |
Abcam |
| T18735 |
40265-40268 |
CC |
denotes |
and |
| T18736 |
40269-40276 |
NNP |
denotes |
Upstate |
| T18737 |
40277-40290 |
NNP |
denotes |
Biotechnology |
| T18738 |
40291-40294 |
CC |
denotes |
and |
| T18739 |
40295-40299 |
VBD |
denotes |
gave |
| T18740 |
40300-40307 |
JJ |
denotes |
similar |
| T18741 |
40308-40315 |
NNS |
denotes |
results |
| T18742 |
40315-40316 |
. |
denotes |
. |
| T18743 |
40316-40544 |
sentence |
denotes |
For Southern blot analysis, we used a 240-bp EcoRI/BamHI fragment from pSAT (major satellite probe) [45–47] and a 360-bp EcoRI/HindIII fragment from R198, corresponding to three copies of the 120-bp minor satellite repeat [49]. |
| T18744 |
40317-40320 |
IN |
denotes |
For |
| T18745 |
40348-40352 |
VBD |
denotes |
used |
| T18746 |
40321-40329 |
NNP |
denotes |
Southern |
| T18747 |
40330-40334 |
NN |
denotes |
blot |
| T18748 |
40335-40343 |
NN |
denotes |
analysis |
| T18749 |
40343-40345 |
, |
denotes |
, |
| T18750 |
40345-40347 |
PRP |
denotes |
we |
| T18751 |
40353-40354 |
DT |
denotes |
a |
| T18752 |
40374-40382 |
NN |
denotes |
fragment |
| T18753 |
40355-40358 |
CD |
denotes |
240 |
| T18754 |
40359-40361 |
NN |
denotes |
bp |
| T18755 |
40358-40359 |
HYPH |
denotes |
- |
| T18756 |
40362-40367 |
NN |
denotes |
EcoRI |
| T18757 |
40368-40373 |
NN |
denotes |
BamHI |
| T18758 |
40367-40368 |
HYPH |
denotes |
/ |
| T18759 |
40383-40387 |
IN |
denotes |
from |
| T18760 |
40388-40392 |
NN |
denotes |
pSAT |
| T18761 |
40393-40394 |
-LRB- |
denotes |
( |
| T18762 |
40410-40415 |
NN |
denotes |
probe |
| T18763 |
40394-40399 |
JJ |
denotes |
major |
| T18764 |
40400-40409 |
NN |
denotes |
satellite |
| T18765 |
40415-40416 |
-RRB- |
denotes |
) |
| T18766 |
40417-40418 |
-LRB- |
denotes |
[ |
| T18767 |
40418-40420 |
CD |
denotes |
45 |
| T18768 |
40420-40421 |
SYM |
denotes |
– |
| T18769 |
40421-40423 |
CD |
denotes |
47 |
| T18770 |
40423-40424 |
-RRB- |
denotes |
] |
| T18771 |
40425-40428 |
CC |
denotes |
and |
| T18772 |
40429-40430 |
DT |
denotes |
a |
| T18773 |
40452-40460 |
NN |
denotes |
fragment |
| T18774 |
40431-40434 |
CD |
denotes |
360 |
| T18775 |
40435-40437 |
NN |
denotes |
bp |
| T18776 |
40434-40435 |
HYPH |
denotes |
- |
| T18777 |
40438-40443 |
NN |
denotes |
EcoRI |
| T18778 |
40444-40451 |
NN |
denotes |
HindIII |
| T18779 |
40443-40444 |
HYPH |
denotes |
/ |
| T18780 |
40461-40465 |
IN |
denotes |
from |
| T18781 |
40466-40470 |
NN |
denotes |
R198 |
| T18782 |
40470-40472 |
, |
denotes |
, |
| T18783 |
40472-40485 |
VBG |
denotes |
corresponding |
| T18784 |
40486-40488 |
IN |
denotes |
to |
| T18785 |
40489-40494 |
CD |
denotes |
three |
| T18786 |
40495-40501 |
NNS |
denotes |
copies |
| T18787 |
40502-40504 |
IN |
denotes |
of |
| T18788 |
40505-40508 |
DT |
denotes |
the |
| T18789 |
40532-40538 |
NN |
denotes |
repeat |
| T18790 |
40509-40512 |
CD |
denotes |
120 |
| T18791 |
40513-40515 |
NN |
denotes |
bp |
| T18792 |
40512-40513 |
HYPH |
denotes |
- |
| T18793 |
40516-40521 |
JJ |
denotes |
minor |
| T18794 |
40522-40531 |
NN |
denotes |
satellite |
| T18795 |
40539-40540 |
-LRB- |
denotes |
[ |
| T18796 |
40540-40542 |
CD |
denotes |
49 |
| T18797 |
40542-40543 |
-RRB- |
denotes |
] |
| T18798 |
40543-40544 |
. |
denotes |
. |
| T18799 |
40544-40603 |
sentence |
denotes |
Probes used in FISH experiments were described in [46–48]. |
| T18800 |
40545-40551 |
NNS |
denotes |
Probes |
| T18801 |
40582-40591 |
VBN |
denotes |
described |
| T18802 |
40552-40556 |
VBN |
denotes |
used |
| T18803 |
40557-40559 |
IN |
denotes |
in |
| T18804 |
40560-40564 |
NN |
denotes |
FISH |
| T18805 |
40565-40576 |
NNS |
denotes |
experiments |
| T18806 |
40577-40581 |
VBD |
denotes |
were |
| T18807 |
40592-40594 |
IN |
denotes |
in |
| T18808 |
40595-40596 |
-LRB- |
denotes |
[ |
| T18809 |
40596-40598 |
CD |
denotes |
46 |
| T18810 |
40598-40599 |
SYM |
denotes |
– |
| T18811 |
40599-40601 |
CD |
denotes |
48 |
| T18812 |
40601-40602 |
-RRB- |
denotes |
] |
| T18813 |
40602-40603 |
. |
denotes |
. |
| T18814 |
40603-40653 |
sentence |
denotes |
The probe for IAP elements was described in [50]. |
| T18815 |
40604-40607 |
DT |
denotes |
The |
| T18816 |
40608-40613 |
NN |
denotes |
probe |
| T18817 |
40635-40644 |
VBN |
denotes |
described |
| T18818 |
40614-40617 |
IN |
denotes |
for |
| T18819 |
40618-40621 |
NN |
denotes |
IAP |
| T18820 |
40622-40630 |
NNS |
denotes |
elements |
| T18821 |
40631-40634 |
VBD |
denotes |
was |
| T18822 |
40645-40647 |
IN |
denotes |
in |
| T18823 |
40648-40649 |
-LRB- |
denotes |
[ |
| T18824 |
40649-40651 |
CD |
denotes |
50 |
| T18825 |
40651-40652 |
-RRB- |
denotes |
] |
| T18826 |
40652-40653 |
. |
denotes |
. |
| T807 |
0-3 |
NN |
denotes |
CAF |
| T8538 |
11274-11276 |
CD |
denotes |
16 |
| R10 |
T810 |
T807 |
punct |
-,CAF |
| R11 |
T811 |
T807 |
nummod |
1,CAF |
| R12 |
T812 |
T808 |
acomp |
Essential,Is |
| R13 |
T813 |
T812 |
prep |
for,Essential |
| R14 |
T814 |
T815 |
compound |
Heterochromatin,Organization |
| R15 |
T815 |
T813 |
pobj |
Organization,for |
| R16 |
T816 |
T808 |
prep |
in,Is |
| R17 |
T817 |
T818 |
amod |
Pluripotent,Cells |
| R18 |
T818 |
T816 |
pobj |
Cells,in |
| R19 |
T819 |
T818 |
amod |
Embryonic,Cells |
| R20 |
T822 |
T823 |
prep |
During,are |
| R21 |
T824 |
T825 |
amod |
mammalian,development |
| R22 |
T825 |
T822 |
pobj |
development,During |
| R23 |
T826 |
T823 |
punct |
", ",are |
| R24 |
T827 |
T828 |
compound |
chromatin,dynamics |
| R25 |
T828 |
T823 |
nsubj |
dynamics,are |
| R26 |
T829 |
T828 |
cc |
and,dynamics |
| R27 |
T830 |
T831 |
amod |
epigenetic,marking |
| R28 |
T831 |
T828 |
conj |
marking,dynamics |
| R29 |
T832 |
T823 |
acomp |
important,are |
| R30 |
T833 |
T832 |
prep |
for,important |
| R31 |
T834 |
T835 |
compound |
genome,reprogramming |
| R32 |
T835 |
T833 |
pobj |
reprogramming,for |
| R33 |
T836 |
T823 |
punct |
.,are |
| R34 |
T838 |
T839 |
amod |
Recent,data |
| R35 |
T839 |
T840 |
nsubj |
data,suggest |
| R36 |
T841 |
T842 |
det |
an,role |
| R37 |
T842 |
T840 |
dobj |
role,suggest |
| R38 |
T843 |
T842 |
amod |
important,role |
| R39 |
T844 |
T842 |
prep |
for,role |
| R40 |
T845 |
T846 |
det |
the,machinery |
| R41 |
T846 |
T844 |
pobj |
machinery,for |
| R42 |
T847 |
T848 |
compound |
chromatin,assembly |
| R43 |
T848 |
T846 |
compound |
assembly,machinery |
| R44 |
T849 |
T842 |
prep |
in,role |
| R45 |
T850 |
T851 |
det |
this,process |
| R46 |
T851 |
T849 |
pobj |
process,in |
| R47 |
T852 |
T840 |
punct |
.,suggest |
| R48 |
T854 |
T855 |
aux |
To,analyze |
| R49 |
T855 |
T856 |
advcl |
analyze,generated |
| R50 |
T857 |
T858 |
det |
the,role |
| R51 |
T858 |
T855 |
dobj |
role,analyze |
| R52 |
T859 |
T858 |
prep |
of,role |
| R53 |
T860 |
T861 |
compound |
chromatin,assembly |
| R54 |
T861 |
T862 |
compound |
assembly,factor |
| R55 |
T862 |
T859 |
pobj |
factor,of |
| R56 |
T863 |
T862 |
nummod |
1,factor |
| R57 |
T864 |
T862 |
punct |
(,factor |
| R58 |
T865 |
T862 |
appos |
CAF,factor |
| R59 |
T866 |
T865 |
punct |
-,CAF |
| R60 |
T867 |
T865 |
nummod |
1,CAF |
| R61 |
T868 |
T862 |
punct |
),factor |
| R62 |
T869 |
T855 |
prep |
during,analyze |
| R63 |
T870 |
T871 |
compound |
pre-implantation,development |
| R64 |
T871 |
T869 |
pobj |
development,during |
| R65 |
T872 |
T856 |
punct |
", ",generated |
| R66 |
T873 |
T856 |
nsubj |
we,generated |
| R67 |
T874 |
T875 |
det |
a,line |
| R68 |
T875 |
T856 |
dobj |
line,generated |
| R69 |
T876 |
T875 |
compound |
mouse,line |
| R70 |
T877 |
T875 |
acl |
carrying,line |
| R71 |
T878 |
T879 |
det |
a,mutation |
| R72 |
T879 |
T877 |
dobj |
mutation,carrying |
| R73 |
T880 |
T879 |
amod |
targeted,mutation |
| R74 |
T881 |
T877 |
prep |
in,carrying |
| R75 |
T882 |
T883 |
det |
the,gene |
| R76 |
T883 |
T881 |
pobj |
gene,in |
| R77 |
T884 |
T883 |
acl |
encoding,gene |
| R78 |
T885 |
T886 |
poss |
its,subunit |
| R79 |
T886 |
T884 |
dobj |
subunit,encoding |
| R80 |
T887 |
T886 |
amod |
large,subunit |
| R81 |
T888 |
T886 |
punct |
", ",subunit |
| R82 |
T889 |
T886 |
appos |
p150CAF,subunit |
| R83 |
T890 |
T889 |
punct |
-,p150CAF |
| R84 |
T891 |
T889 |
nummod |
1,p150CAF |
| R85 |
T892 |
T856 |
punct |
.,generated |
| R86 |
T894 |
T895 |
nsubj |
Loss,leads |
| R87 |
T896 |
T894 |
prep |
of,Loss |
| R88 |
T897 |
T896 |
pobj |
p150CAF,of |
| R89 |
T898 |
T897 |
punct |
-,p150CAF |
| R90 |
T899 |
T897 |
nummod |
1,p150CAF |
| R91 |
T900 |
T894 |
prep |
in,Loss |
| R92 |
T901 |
T902 |
amod |
homozygous,mutants |
| R93 |
T902 |
T900 |
pobj |
mutants,in |
| R94 |
T903 |
T895 |
prep |
to,leads |
| R95 |
T904 |
T905 |
amod |
developmental,arrest |
| R96 |
T905 |
T903 |
pobj |
arrest,to |
| R97 |
T906 |
T905 |
prep |
at,arrest |
| R98 |
T907 |
T908 |
det |
the,stage |
| R99 |
T908 |
T906 |
pobj |
stage,at |
| R100 |
T909 |
T910 |
nummod |
16,cell |
| R101 |
T910 |
T908 |
compound |
cell,stage |
| R102 |
T911 |
T910 |
punct |
-,cell |
| R103 |
T912 |
T895 |
punct |
.,leads |
| R104 |
T914 |
T915 |
nsubj |
Absence,results |
| R105 |
T916 |
T914 |
prep |
of,Absence |
| R106 |
T917 |
T916 |
pobj |
p150CAF,of |
| R107 |
T918 |
T917 |
punct |
-,p150CAF |
| R108 |
T919 |
T917 |
nummod |
1,p150CAF |
| R109 |
T920 |
T914 |
prep |
in,Absence |
| R110 |
T921 |
T922 |
det |
these,embryos |
| R111 |
T922 |
T920 |
pobj |
embryos,in |
| R112 |
T923 |
T915 |
prep |
in,results |
| R113 |
T924 |
T925 |
amod |
severe,alterations |
| R114 |
T925 |
T923 |
pobj |
alterations,in |
| R115 |
T926 |
T925 |
prep |
in,alterations |
| R116 |
T927 |
T928 |
det |
the,organization |
| R117 |
T928 |
T926 |
pobj |
organization,in |
| R118 |
T929 |
T928 |
amod |
nuclear,organization |
| R119 |
T930 |
T928 |
prep |
of,organization |
| R120 |
T931 |
T932 |
amod |
constitutive,heterochromatin |
| R121 |
T932 |
T930 |
pobj |
heterochromatin,of |
| R122 |
T933 |
T915 |
punct |
.,results |
| R123 |
T935 |
T936 |
nsubj |
We,provide |
| R124 |
T937 |
T936 |
dobj |
evidence,provide |
| R125 |
T938 |
T939 |
mark |
that,reorganized |
| R126 |
T939 |
T937 |
acl |
reorganized,evidence |
| R127 |
T940 |
T939 |
prep |
in,reorganized |
| R128 |
T941 |
T942 |
amod |
wild,type |
| R129 |
T942 |
T944 |
compound |
type,embryos |
| R130 |
T943 |
T942 |
punct |
-,type |
| R131 |
T944 |
T940 |
pobj |
embryos,in |
| R132 |
T945 |
T939 |
punct |
", ",reorganized |
| R133 |
T946 |
T947 |
compound |
heterochromatin,domains |
| R134 |
T947 |
T939 |
nsubjpass |
domains,reorganized |
| R135 |
T948 |
T939 |
auxpass |
are,reorganized |
| R136 |
T949 |
T939 |
advmod |
extensively,reorganized |
| R137 |
T950 |
T939 |
prep |
between,reorganized |
| R138 |
T951 |
T952 |
det |
the,stages |
| R139 |
T952 |
T950 |
pobj |
stages,between |
| R140 |
T953 |
T954 |
nummod |
two,cell |
| R141 |
T954 |
T952 |
nmod |
cell,stages |
| R142 |
T955 |
T954 |
punct |
-,cell |
| R143 |
T956 |
T954 |
cc |
and,cell |
| R144 |
T957 |
T954 |
conj |
blastocyst,cell |
| R145 |
T958 |
T936 |
punct |
.,provide |
| R146 |
T960 |
T961 |
prep |
In,displays |
| R147 |
T962 |
T963 |
nmod |
p150CAF,embryos |
| R148 |
T963 |
T960 |
pobj |
embryos,In |
| R149 |
T964 |
T962 |
punct |
-,p150CAF |
| R150 |
T965 |
T962 |
nummod |
1,p150CAF |
| R151 |
T966 |
T963 |
nmod |
mutant,embryos |
| R152 |
T967 |
T968 |
nummod |
16,cell |
| R153 |
T968 |
T970 |
compound |
cell,stage |
| R154 |
T969 |
T968 |
punct |
-,cell |
| R155 |
T970 |
T963 |
compound |
stage,embryos |
| R156 |
T971 |
T961 |
punct |
", ",displays |
| R157 |
T972 |
T973 |
det |
the,organization |
| R158 |
T973 |
T961 |
nsubj |
organization,displays |
| R159 |
T974 |
T973 |
amod |
altered,organization |
| R160 |
T975 |
T973 |
prep |
of,organization |
| R161 |
T976 |
T975 |
pobj |
heterochromatin,of |
| R162 |
T977 |
T961 |
dobj |
similarities,displays |
| R163 |
T978 |
T977 |
prep |
to,similarities |
| R164 |
T979 |
T980 |
det |
the,structure |
| R165 |
T980 |
T978 |
pobj |
structure,to |
| R166 |
T981 |
T980 |
prep |
of,structure |
| R167 |
T982 |
T981 |
pobj |
heterochromatin,of |
| R168 |
T983 |
T961 |
prep |
in,displays |
| R169 |
T984 |
T985 |
quantmod |
two,four |
| R170 |
T985 |
T988 |
nummod |
four,cell |
| R171 |
T986 |
T985 |
punct |
-,four |
| R172 |
T987 |
T985 |
quantmod |
to,four |
| R173 |
T988 |
T990 |
nmod |
cell,stage |
| R174 |
T989 |
T988 |
punct |
-,cell |
| R175 |
T990 |
T991 |
nmod |
stage,embryos |
| R176 |
T991 |
T983 |
pobj |
embryos,in |
| R177 |
T992 |
T993 |
amod |
wild,type |
| R178 |
T993 |
T991 |
compound |
type,embryos |
| R179 |
T994 |
T993 |
punct |
-,type |
| R180 |
T995 |
T961 |
punct |
", ",displays |
| R181 |
T996 |
T961 |
advcl |
suggesting,displays |
| R182 |
T997 |
T998 |
mark |
that,required |
| R183 |
T998 |
T996 |
ccomp |
required,suggesting |
| R184 |
T999 |
T998 |
nsubjpass |
CAF,required |
| R185 |
T1000 |
T999 |
punct |
-,CAF |
| R186 |
T1001 |
T999 |
nummod |
1,CAF |
| R187 |
T1002 |
T998 |
auxpass |
is,required |
| R188 |
T1003 |
T998 |
prep |
for,required |
| R189 |
T1004 |
T1005 |
det |
the,maturation |
| R190 |
T1005 |
T1003 |
pobj |
maturation,for |
| R191 |
T1006 |
T1005 |
prep |
of,maturation |
| R192 |
T1007 |
T1006 |
pobj |
heterochromatin,of |
| R193 |
T1008 |
T998 |
prep |
during,required |
| R194 |
T1009 |
T1010 |
compound |
preimplantation,development |
| R195 |
T1010 |
T1008 |
pobj |
development,during |
| R196 |
T1011 |
T961 |
punct |
.,displays |
| R197 |
T1013 |
T1014 |
prep |
In,results |
| R198 |
T1015 |
T1016 |
amod |
embryonic,cells |
| R199 |
T1016 |
T1013 |
pobj |
cells,In |
| R200 |
T1017 |
T1016 |
compound |
stem,cells |
| R201 |
T1018 |
T1014 |
punct |
", ",results |
| R202 |
T1019 |
T1014 |
nsubj |
depletion,results |
| R203 |
T1020 |
T1019 |
prep |
of,depletion |
| R204 |
T1021 |
T1020 |
pobj |
p150CAF,of |
| R205 |
T1022 |
T1021 |
punct |
-,p150CAF |
| R206 |
T1023 |
T1021 |
nummod |
1,p150CAF |
| R207 |
T1024 |
T1019 |
acl |
using,depletion |
| R208 |
T1025 |
T1026 |
compound |
RNA,interference |
| R209 |
T1026 |
T1024 |
dobj |
interference,using |
| R210 |
T1027 |
T1014 |
prep |
in,results |
| R211 |
T1028 |
T1029 |
det |
the,mislocalization |
| R212 |
T1029 |
T1027 |
pobj |
mislocalization,in |
| R213 |
T1030 |
T1029 |
punct |
", ",mislocalization |
| R214 |
T1031 |
T1029 |
conj |
loss,mislocalization |
| R215 |
T1032 |
T1031 |
prep |
of,loss |
| R216 |
T1033 |
T1032 |
pobj |
clustering,of |
| R217 |
T1034 |
T1031 |
punct |
", ",loss |
| R218 |
T1035 |
T1031 |
cc |
and,loss |
| R219 |
T1036 |
T1031 |
conj |
decondensation,loss |
| R220 |
T1037 |
T1029 |
prep |
of,mislocalization |
| R221 |
T1038 |
T1039 |
amod |
pericentric,domains |
| R222 |
T1039 |
T1037 |
pobj |
domains,of |
| R223 |
T1040 |
T1039 |
compound |
heterochromatin,domains |
| R224 |
T1041 |
T1014 |
punct |
.,results |
| R225 |
T1043 |
T1044 |
advmod |
Furthermore,results |
| R226 |
T1045 |
T1044 |
punct |
", ",results |
| R227 |
T1046 |
T1044 |
nsubj |
loss,results |
| R228 |
T1047 |
T1046 |
prep |
of,loss |
| R229 |
T1048 |
T1047 |
pobj |
CAF,of |
| R230 |
T1049 |
T1048 |
punct |
-,CAF |
| R231 |
T1050 |
T1048 |
nummod |
1,CAF |
| R232 |
T1051 |
T1046 |
prep |
in,loss |
| R233 |
T1052 |
T1053 |
det |
these,cells |
| R234 |
T1053 |
T1051 |
pobj |
cells,in |
| R235 |
T1054 |
T1044 |
prep |
in,results |
| R236 |
T1055 |
T1056 |
det |
the,alteration |
| R237 |
T1056 |
T1054 |
pobj |
alteration,in |
| R238 |
T1057 |
T1056 |
prep |
of,alteration |
| R239 |
T1058 |
T1059 |
amod |
epigenetic,methylation |
| R240 |
T1059 |
T1061 |
compound |
methylation,marks |
| R241 |
T1060 |
T1059 |
compound |
histone,methylation |
| R242 |
T1061 |
T1057 |
pobj |
marks,of |
| R243 |
T1062 |
T1056 |
prep |
at,alteration |
| R244 |
T1063 |
T1064 |
det |
the,level |
| R245 |
T1064 |
T1062 |
pobj |
level,at |
| R246 |
T1065 |
T1064 |
prep |
of,level |
| R247 |
T1066 |
T1067 |
amod |
pericentric,heterochromatin |
| R248 |
T1067 |
T1065 |
pobj |
heterochromatin,of |
| R249 |
T1068 |
T1044 |
punct |
.,results |
| R250 |
T1070 |
T1071 |
det |
These,alterations |
| R251 |
T1071 |
T1072 |
nsubjpass |
alterations,found |
| R252 |
T1073 |
T1071 |
prep |
of,alterations |
| R253 |
T1074 |
T1073 |
pobj |
heterochromatin,of |
| R254 |
T1075 |
T1072 |
auxpass |
are,found |
| R255 |
T1076 |
T1072 |
neg |
not,found |
| R256 |
T1077 |
T1072 |
prep |
in,found |
| R257 |
T1078 |
T1079 |
npadvmod |
p150CAF,depleted |
| R258 |
T1079 |
T1083 |
amod |
depleted,fibroblasts |
| R259 |
T1080 |
T1078 |
punct |
-,p150CAF |
| R260 |
T1081 |
T1078 |
nummod |
1,p150CAF |
| R261 |
T1082 |
T1079 |
punct |
-,depleted |
| R262 |
T1083 |
T1077 |
pobj |
fibroblasts,in |
| R263 |
T1084 |
T1083 |
nmod |
mouse,fibroblasts |
| R264 |
T1085 |
T1083 |
amod |
embryonic,fibroblasts |
| R265 |
T1086 |
T1083 |
punct |
", ",fibroblasts |
| R266 |
T1087 |
T1088 |
dep |
which,are |
| R267 |
T1088 |
T1083 |
relcl |
are,fibroblasts |
| R268 |
T1089 |
T1088 |
attr |
cells,are |
| R269 |
T1090 |
T1091 |
dep |
that,committed |
| R270 |
T1091 |
T1089 |
relcl |
committed,cells |
| R271 |
T1092 |
T1091 |
auxpass |
are,committed |
| R272 |
T1093 |
T1091 |
advmod |
already,committed |
| R273 |
T1094 |
T1091 |
dep |
lineage,committed |
| R274 |
T1095 |
T1072 |
punct |
", ",found |
| R275 |
T1096 |
T1072 |
advcl |
suggesting,found |
| R276 |
T1097 |
T1098 |
mark |
that,required |
| R277 |
T1098 |
T1096 |
ccomp |
required,suggesting |
| R278 |
T1099 |
T1098 |
nsubjpass |
CAF,required |
| R279 |
T1100 |
T1099 |
punct |
-,CAF |
| R280 |
T1101 |
T1099 |
nummod |
1,CAF |
| R281 |
T1102 |
T1098 |
auxpass |
is,required |
| R282 |
T1103 |
T1098 |
advmod |
specifically,required |
| R283 |
T1104 |
T1098 |
prep |
for,required |
| R284 |
T1105 |
T1106 |
compound |
heterochromatin,organization |
| R285 |
T1106 |
T1104 |
pobj |
organization,for |
| R286 |
T1107 |
T1098 |
prep |
in,required |
| R287 |
T1108 |
T1109 |
amod |
pluripotent,cells |
| R288 |
T1109 |
T1107 |
pobj |
cells,in |
| R289 |
T1110 |
T1109 |
amod |
embryonic,cells |
| R290 |
T1111 |
T1072 |
punct |
.,found |
| R291 |
T1113 |
T1114 |
poss |
Our,findings |
| R292 |
T1114 |
T1115 |
nsubj |
findings,underline |
| R293 |
T1116 |
T1117 |
det |
the,role |
| R294 |
T1117 |
T1115 |
dobj |
role,underline |
| R295 |
T1118 |
T1117 |
prep |
of,role |
| R296 |
T1119 |
T1120 |
det |
the,machinery |
| R297 |
T1120 |
T1118 |
pobj |
machinery,of |
| R298 |
T1121 |
T1122 |
compound |
chromatin,assembly |
| R299 |
T1122 |
T1120 |
compound |
assembly,machinery |
| R300 |
T1123 |
T1117 |
prep |
in,role |
| R301 |
T1124 |
T1123 |
pcomp |
controlling,in |
| R302 |
T1125 |
T1126 |
det |
the,organization |
| R303 |
T1126 |
T1124 |
dobj |
organization,controlling |
| R304 |
T1127 |
T1126 |
amod |
spatial,organization |
| R305 |
T1128 |
T1126 |
cc |
and,organization |
| R306 |
T1129 |
T1130 |
amod |
epigenetic,marking |
| R307 |
T1130 |
T1126 |
conj |
marking,organization |
| R308 |
T1131 |
T1126 |
prep |
of,organization |
| R309 |
T1132 |
T1133 |
det |
the,genome |
| R310 |
T1133 |
T1131 |
pobj |
genome,of |
| R311 |
T1134 |
T1124 |
prep |
in,controlling |
| R312 |
T1135 |
T1136 |
amod |
early,embryos |
| R313 |
T1136 |
T1134 |
pobj |
embryos,in |
| R314 |
T1137 |
T1136 |
cc |
and,embryos |
| R315 |
T1138 |
T1139 |
amod |
embryonic,cells |
| R316 |
T1139 |
T1136 |
conj |
cells,embryos |
| R317 |
T1140 |
T1139 |
compound |
stem,cells |
| R318 |
T1141 |
T1115 |
punct |
.,underline |
| R319 |
T807 |
T808 |
nsubj |
CAF,Is |
| R330 |
T2297 |
T2298 |
prep |
During,undergoes |
| R331 |
T2299 |
T2300 |
compound |
mouse,development |
| R332 |
T2300 |
T2297 |
pobj |
development,During |
| R333 |
T2301 |
T2300 |
compound |
pre-implantation,development |
| R334 |
T2302 |
T2298 |
punct |
", ",undergoes |
| R335 |
T2303 |
T2304 |
det |
the,genome |
| R336 |
T2304 |
T2298 |
nsubj |
genome,undergoes |
| R337 |
T2305 |
T2306 |
det |
a,series |
| R338 |
T2306 |
T2298 |
dobj |
series,undergoes |
| R339 |
T2307 |
T2306 |
prep |
of,series |
| R340 |
T2308 |
T2309 |
amod |
major,changes |
| R341 |
T2309 |
T2307 |
pobj |
changes,of |
| R342 |
T2310 |
T2309 |
amod |
epigenetic,changes |
| R343 |
T2311 |
T2309 |
acl |
required,changes |
| R344 |
T2312 |
T2311 |
prep |
for,required |
| R345 |
T2313 |
T2314 |
amod |
embryonic,expression |
| R346 |
T2314 |
T2312 |
pobj |
expression,for |
| R347 |
T2315 |
T2314 |
compound |
gene,expression |
| R348 |
T2316 |
T2314 |
punct |
", ",expression |
| R349 |
T2317 |
T2318 |
det |
the,maintenance |
| R350 |
T2318 |
T2314 |
conj |
maintenance,expression |
| R351 |
T2319 |
T2318 |
prep |
of,maintenance |
| R352 |
T2320 |
T2319 |
pobj |
totipotency,of |
| R353 |
T2321 |
T2318 |
punct |
", ",maintenance |
| R354 |
T2322 |
T2318 |
cc |
and,maintenance |
| R355 |
T2323 |
T2324 |
det |
the,events |
| R356 |
T2324 |
T2318 |
conj |
events,maintenance |
| R357 |
T2325 |
T2324 |
amod |
first,events |
| R358 |
T2326 |
T2324 |
compound |
differentiation,events |
| R359 |
T2327 |
T2328 |
punct |
[,2 |
| R360 |
T2328 |
T2298 |
parataxis |
2,undergoes |
| R361 |
T2329 |
T2328 |
nummod |
1,2 |
| R362 |
T2330 |
T2328 |
punct |
",",2 |
| R363 |
T2331 |
T2328 |
punct |
],2 |
| R364 |
T2332 |
T2298 |
punct |
.,undergoes |
| R365 |
T2334 |
T2335 |
mark |
While,established |
| R366 |
T2335 |
T2339 |
advcl |
established,point |
| R367 |
T2336 |
T2337 |
amod |
many,studies |
| R368 |
T2337 |
T2335 |
nsubj |
studies,established |
| R369 |
T2338 |
T2335 |
aux |
have,established |
| R370 |
T2340 |
T2341 |
det |
the,importance |
| R371 |
T2341 |
T2335 |
dobj |
importance,established |
| R372 |
T2342 |
T2341 |
prep |
of,importance |
| R373 |
T2343 |
T2344 |
compound |
DNA,methylation |
| R374 |
T2344 |
T2342 |
pobj |
methylation,of |
| R375 |
T2345 |
T2341 |
prep |
in,importance |
| R376 |
T2346 |
T2347 |
amod |
epigenetic,reprogramming |
| R377 |
T2347 |
T2345 |
pobj |
reprogramming,in |
| R378 |
T2348 |
T2339 |
punct |
", ",point |
| R379 |
T2349 |
T2350 |
amod |
recent,data |
| R380 |
T2350 |
T2339 |
nsubj |
data,point |
| R381 |
T2351 |
T2339 |
prep |
to,point |
| R382 |
T2352 |
T2353 |
det |
a,role |
| R383 |
T2353 |
T2351 |
pobj |
role,to |
| R384 |
T2354 |
T2353 |
amod |
crucial,role |
| R385 |
T2355 |
T2353 |
prep |
of,role |
| R386 |
T2356 |
T2355 |
pobj |
chromatin,of |
| R387 |
T2357 |
T2353 |
prep |
in,role |
| R388 |
T2358 |
T2359 |
det |
this,process |
| R389 |
T2359 |
T2357 |
pobj |
process,in |
| R390 |
T2360 |
T2361 |
punct |
[,3 |
| R391 |
T2361 |
T2339 |
parataxis |
3,point |
| R392 |
T2362 |
T2363 |
punct |
–,5 |
| R393 |
T2363 |
T2361 |
prep |
5,3 |
| R394 |
T2364 |
T2361 |
punct |
],3 |
| R395 |
T2365 |
T2339 |
punct |
.,point |
| R396 |
T2367 |
T2368 |
advmod |
Yet,know |
| R397 |
T2369 |
T2368 |
nsubj |
we,know |
| R398 |
T2370 |
T2371 |
advmod |
very,little |
| R399 |
T2371 |
T2368 |
dobj |
little,know |
| R400 |
T2372 |
T2371 |
prep |
about,little |
| R401 |
T2373 |
T2374 |
det |
the,role |
| R402 |
T2374 |
T2372 |
pobj |
role,about |
| R403 |
T2375 |
T2374 |
prep |
of,role |
| R404 |
T2376 |
T2377 |
npadvmod |
histone,modifying |
| R405 |
T2377 |
T2378 |
amod |
modifying,enzymes |
| R406 |
T2378 |
T2375 |
pobj |
enzymes,of |
| R407 |
T2379 |
T2378 |
punct |
", ",enzymes |
| R408 |
T2380 |
T2381 |
compound |
chromatin,remodeling |
| R409 |
T2381 |
T2382 |
compound |
remodeling,factors |
| R410 |
T2382 |
T2378 |
conj |
factors,enzymes |
| R411 |
T2383 |
T2382 |
punct |
", ",factors |
| R412 |
T2384 |
T2382 |
cc |
and,factors |
| R413 |
T2385 |
T2386 |
compound |
histone,chaperones |
| R414 |
T2386 |
T2382 |
conj |
chaperones,factors |
| R415 |
T2387 |
T2374 |
prep |
during,role |
| R416 |
T2388 |
T2389 |
compound |
pre-implantation,development |
| R417 |
T2389 |
T2387 |
pobj |
development,during |
| R418 |
T2390 |
T2387 |
punct |
", ",during |
| R419 |
T2391 |
T2387 |
cc |
or,during |
| R420 |
T2392 |
T2387 |
conj |
in,during |
| R421 |
T2393 |
T2394 |
compound |
stem,cells |
| R422 |
T2394 |
T2392 |
pobj |
cells,in |
| R423 |
T2395 |
T2394 |
acl |
derived,cells |
| R424 |
T2396 |
T2395 |
prep |
from,derived |
| R425 |
T2397 |
T2398 |
amod |
early,embryos |
| R426 |
T2398 |
T2396 |
pobj |
embryos,from |
| R427 |
T2399 |
T2400 |
punct |
[,6 |
| R428 |
T2400 |
T2368 |
parataxis |
6,know |
| R429 |
T2401 |
T2400 |
punct |
],6 |
| R430 |
T2402 |
T2368 |
punct |
.,know |
| R431 |
T2404 |
T2405 |
det |
A,subset |
| R432 |
T2405 |
T2406 |
nsubj |
subset,collaborate |
| R433 |
T2407 |
T2405 |
prep |
of,subset |
| R434 |
T2408 |
T2409 |
amod |
identified,chaperones |
| R435 |
T2409 |
T2407 |
pobj |
chaperones,of |
| R436 |
T2410 |
T2409 |
compound |
histone,chaperones |
| R437 |
T2411 |
T2409 |
cc |
and,chaperones |
| R438 |
T2412 |
T2413 |
compound |
chromatin,remodeling |
| R439 |
T2413 |
T2414 |
compound |
remodeling,complexes |
| R440 |
T2414 |
T2409 |
conj |
complexes,chaperones |
| R441 |
T2415 |
T2406 |
aux |
can,collaborate |
| R442 |
T2416 |
T2417 |
aux |
to,promote |
| R443 |
T2417 |
T2406 |
advcl |
promote,collaborate |
| R444 |
T2418 |
T2419 |
compound |
nucleosome,assembly |
| R445 |
T2419 |
T2417 |
dobj |
assembly,promote |
| R446 |
T2420 |
T2421 |
advmod |
in,vitro |
| R447 |
T2421 |
T2417 |
advmod |
vitro,promote |
| R448 |
T2422 |
T2406 |
cc |
and,collaborate |
| R449 |
T2423 |
T2406 |
conj |
are,collaborate |
| R450 |
T2424 |
T2423 |
advmod |
therefore,are |
| R451 |
T2425 |
T2423 |
prep |
in,are |
| R452 |
T2426 |
T2427 |
det |
a,position |
| R453 |
T2427 |
T2425 |
pobj |
position,in |
| R454 |
T2428 |
T2427 |
amod |
strategic,position |
| R455 |
T2429 |
T2430 |
aux |
to,control |
| R456 |
T2430 |
T2427 |
advcl |
control,position |
| R457 |
T2431 |
T2432 |
compound |
chromatin,assembly |
| R458 |
T2432 |
T2430 |
dobj |
assembly,control |
| R459 |
T2433 |
T2432 |
cc |
and,assembly |
| R460 |
T2434 |
T2432 |
conj |
maturation,assembly |
| R461 |
T2435 |
T2430 |
prep |
during,control |
| R462 |
T2436 |
T2435 |
pobj |
development,during |
| R463 |
T2437 |
T2438 |
punct |
[,8 |
| R464 |
T2438 |
T2423 |
parataxis |
8,are |
| R465 |
T2439 |
T2438 |
nummod |
7,8 |
| R466 |
T2440 |
T2438 |
punct |
",",8 |
| R467 |
T2441 |
T2438 |
punct |
],8 |
| R468 |
T2442 |
T2406 |
punct |
.,collaborate |
| R469 |
T2444 |
T2445 |
prep |
Among,is |
| R470 |
T2446 |
T2447 |
compound |
histone,chaperones |
| R471 |
T2447 |
T2444 |
pobj |
chaperones,Among |
| R472 |
T2448 |
T2445 |
punct |
", ",is |
| R473 |
T2449 |
T2450 |
compound |
chromatin,assembly |
| R474 |
T2450 |
T2451 |
compound |
assembly,factor |
| R475 |
T2451 |
T2445 |
nsubj |
factor,is |
| R476 |
T2452 |
T2451 |
nummod |
1,factor |
| R477 |
T2453 |
T2451 |
punct |
(,factor |
| R478 |
T2454 |
T2451 |
appos |
CAF,factor |
| R479 |
T2455 |
T2454 |
punct |
-,CAF |
| R480 |
T2456 |
T2454 |
nummod |
1,CAF |
| R481 |
T2457 |
T2445 |
punct |
),is |
| R482 |
T2458 |
T2459 |
det |
a,complex |
| R483 |
T2459 |
T2445 |
attr |
complex,is |
| R484 |
T2460 |
T2461 |
nummod |
three,subunit |
| R485 |
T2461 |
T2459 |
nmod |
subunit,complex |
| R486 |
T2462 |
T2461 |
punct |
-,subunit |
| R487 |
T2463 |
T2464 |
punct |
(,p150 |
| R488 |
T2464 |
T2461 |
parataxis |
p150,subunit |
| R489 |
T2465 |
T2464 |
punct |
", ",p150 |
| R490 |
T2466 |
T2464 |
conj |
p60,p150 |
| R491 |
T2467 |
T2466 |
punct |
", ",p60 |
| R492 |
T2468 |
T2466 |
cc |
and,p60 |
| R493 |
T2469 |
T2466 |
conj |
p48,p60 |
| R494 |
T2470 |
T2464 |
punct |
),p150 |
| R495 |
T2471 |
T2472 |
dep |
which,promotes |
| R496 |
T2472 |
T2459 |
relcl |
promotes,complex |
| R497 |
T2473 |
T2474 |
nmod |
histone,H3 |
| R498 |
T2474 |
T2475 |
nmod |
H3,deposition |
| R499 |
T2475 |
T2472 |
dobj |
deposition,promotes |
| R500 |
T2476 |
T2474 |
cc |
and,H3 |
| R501 |
T2477 |
T2474 |
conj |
H4,H3 |
| R502 |
T2478 |
T2475 |
prep |
onto,deposition |
| R503 |
T2479 |
T2480 |
advmod |
newly,synthesized |
| R504 |
T2480 |
T2481 |
amod |
synthesized,DNA |
| R505 |
T2481 |
T2478 |
pobj |
DNA,onto |
| R506 |
T2482 |
T2472 |
prep |
during,promotes |
| R507 |
T2483 |
T2482 |
pobj |
replication,during |
| R508 |
T2484 |
T2483 |
cc |
or,replication |
| R509 |
T2485 |
T2486 |
compound |
DNA,repair |
| R510 |
T2486 |
T2483 |
conj |
repair,replication |
| R511 |
T2487 |
T2488 |
punct |
[,10 |
| R512 |
T2488 |
T2445 |
parataxis |
10,is |
| R513 |
T2489 |
T2488 |
nummod |
9,10 |
| R514 |
T2490 |
T2488 |
punct |
",",10 |
| R515 |
T2491 |
T2488 |
punct |
],10 |
| R516 |
T2492 |
T2445 |
punct |
.,is |
| R517 |
T2494 |
T2495 |
advmod |
Specifically,deposits |
| R518 |
T2496 |
T2495 |
punct |
", ",deposits |
| R519 |
T2497 |
T2495 |
nsubj |
CAF,deposits |
| R520 |
T2498 |
T2497 |
punct |
-,CAF |
| R521 |
T2499 |
T2497 |
nummod |
1,CAF |
| R522 |
T2500 |
T2501 |
det |
the,variant |
| R523 |
T2501 |
T2495 |
dobj |
variant,deposits |
| R524 |
T2502 |
T2503 |
compound |
histone,H3 |
| R525 |
T2503 |
T2501 |
compound |
H3,variant |
| R526 |
T2504 |
T2501 |
appos |
H3.1,variant |
| R527 |
T2505 |
T2495 |
prep |
into,deposits |
| R528 |
T2506 |
T2505 |
pobj |
chromatin,into |
| R529 |
T2507 |
T2495 |
punct |
", ",deposits |
| R530 |
T2508 |
T2495 |
prep |
in,deposits |
| R531 |
T2509 |
T2510 |
det |
a,pathway |
| R532 |
T2510 |
T2508 |
pobj |
pathway,in |
| R533 |
T2511 |
T2510 |
acl |
coupled,pathway |
| R534 |
T2512 |
T2511 |
prep |
to,coupled |
| R535 |
T2513 |
T2514 |
compound |
DNA,synthesis |
| R536 |
T2514 |
T2512 |
pobj |
synthesis,to |
| R537 |
T2515 |
T2495 |
punct |
", ",deposits |
| R538 |
T2516 |
T2517 |
mark |
whereas,involved |
| R539 |
T2517 |
T2495 |
advcl |
involved,deposits |
| R540 |
T2518 |
T2519 |
det |
a,chaperone |
| R541 |
T2519 |
T2517 |
nsubjpass |
chaperone,involved |
| R542 |
T2520 |
T2519 |
amod |
second,chaperone |
| R543 |
T2521 |
T2519 |
compound |
histone,chaperone |
| R544 |
T2522 |
T2519 |
punct |
", ",chaperone |
| R545 |
T2523 |
T2519 |
appos |
HIRA,chaperone |
| R546 |
T2524 |
T2517 |
punct |
", ",involved |
| R547 |
T2525 |
T2517 |
auxpass |
is,involved |
| R548 |
T2526 |
T2517 |
prep |
in,involved |
| R549 |
T2527 |
T2528 |
det |
the,deposition |
| R550 |
T2528 |
T2526 |
pobj |
deposition,in |
| R551 |
T2529 |
T2528 |
prep |
of,deposition |
| R552 |
T2530 |
T2531 |
det |
the,variant |
| R553 |
T2531 |
T2529 |
pobj |
variant,of |
| R554 |
T2532 |
T2531 |
compound |
H3.3,variant |
| R555 |
T2533 |
T2528 |
prep |
in,deposition |
| R556 |
T2534 |
T2535 |
det |
a,pathway |
| R557 |
T2535 |
T2533 |
pobj |
pathway,in |
| R558 |
T2536 |
T2537 |
nmod |
DNA,synthesis |
| R559 |
T2537 |
T2535 |
nmod |
synthesis,pathway |
| R560 |
T2538 |
T2535 |
amod |
independent,pathway |
| R561 |
T2539 |
T2540 |
punct |
[,12 |
| R562 |
T2540 |
T2495 |
parataxis |
12,deposits |
| R563 |
T2541 |
T2540 |
nummod |
11,12 |
| R564 |
T2542 |
T2540 |
punct |
",",12 |
| R565 |
T2543 |
T2540 |
punct |
],12 |
| R566 |
T2544 |
T2495 |
punct |
.,deposits |
| R567 |
T2546 |
T2547 |
prep |
In,interacts |
| R568 |
T2548 |
T2546 |
pobj |
addition,In |
| R569 |
T2549 |
T2548 |
prep |
to,addition |
| R570 |
T2550 |
T2551 |
det |
this,activity |
| R571 |
T2551 |
T2549 |
pobj |
activity,to |
| R572 |
T2552 |
T2551 |
amod |
specific,activity |
| R573 |
T2553 |
T2554 |
compound |
chromatin,assembly |
| R574 |
T2554 |
T2551 |
compound |
assembly,activity |
| R575 |
T2555 |
T2547 |
punct |
", ",interacts |
| R576 |
T2556 |
T2547 |
nsubj |
CAF,interacts |
| R577 |
T2557 |
T2556 |
punct |
-,CAF |
| R578 |
T2558 |
T2556 |
nummod |
1,CAF |
| R579 |
T2559 |
T2547 |
prep |
with,interacts |
| R580 |
T2560 |
T2561 |
amod |
several,proteins |
| R581 |
T2561 |
T2559 |
pobj |
proteins,with |
| R582 |
T2562 |
T2561 |
relcl |
present,proteins |
| R583 |
T2563 |
T2562 |
prep |
in,present |
| R584 |
T2564 |
T2563 |
pobj |
heterochromatin,in |
| R585 |
T2565 |
T2561 |
punct |
", ",proteins |
| R586 |
T2566 |
T2561 |
prep |
including,proteins |
| R587 |
T2567 |
T2568 |
compound |
heterochromatin,protein |
| R588 |
T2568 |
T2566 |
pobj |
protein,including |
| R589 |
T2569 |
T2568 |
nummod |
1,protein |
| R590 |
T2570 |
T2568 |
punct |
(,protein |
| R591 |
T2571 |
T2568 |
appos |
HP1,protein |
| R592 |
T2572 |
T2568 |
punct |
),protein |
| R593 |
T2573 |
T2574 |
cc |
and,MBD1 |
| R594 |
T2574 |
T2568 |
appos |
MBD1,protein |
| R595 |
T2575 |
T2574 |
punct |
", ",MBD1 |
| R596 |
T2576 |
T2577 |
det |
a,protein |
| R597 |
T2577 |
T2574 |
appos |
protein,MBD1 |
| R598 |
T2578 |
T2579 |
compound |
methyl,CpG |
| R599 |
T2579 |
T2577 |
compound |
CpG,protein |
| R600 |
T2580 |
T2579 |
punct |
-,CpG |
| R601 |
T2581 |
T2582 |
compound |
binding,domain |
| R602 |
T2582 |
T2577 |
compound |
domain,protein |
| R603 |
T2583 |
T2584 |
dep |
that,recruits |
| R604 |
T2584 |
T2577 |
relcl |
recruits,protein |
| R605 |
T2585 |
T2586 |
nmod |
histone,deacetylase |
| R606 |
T2586 |
T2587 |
nmod |
deacetylase,activities |
| R607 |
T2587 |
T2584 |
dobj |
activities,recruits |
| R608 |
T2588 |
T2586 |
cc |
and,deacetylase |
| R609 |
T2589 |
T2590 |
amod |
repressive,methyltransferase |
| R610 |
T2590 |
T2586 |
conj |
methyltransferase,deacetylase |
| R611 |
T2591 |
T2590 |
compound |
histone,methyltransferase |
| R612 |
T2592 |
T2593 |
punct |
[,13 |
| R613 |
T2593 |
T2547 |
parataxis |
13,interacts |
| R614 |
T2594 |
T2595 |
punct |
–,15 |
| R615 |
T2595 |
T2593 |
prep |
15,13 |
| R616 |
T2596 |
T2593 |
punct |
],13 |
| R617 |
T2597 |
T2547 |
punct |
.,interacts |
| R618 |
T2599 |
T2600 |
advmod |
Furthermore,required |
| R619 |
T2601 |
T2600 |
punct |
", ",required |
| R620 |
T2602 |
T2600 |
nsubjpass |
p150CAF,required |
| R621 |
T2603 |
T2602 |
punct |
-,p150CAF |
| R622 |
T2604 |
T2602 |
nummod |
1,p150CAF |
| R623 |
T2605 |
T2600 |
auxpass |
is,required |
| R624 |
T2606 |
T2607 |
aux |
to,ensure |
| R625 |
T2607 |
T2600 |
advcl |
ensure,required |
| R626 |
T2608 |
T2609 |
det |
a,pool |
| R627 |
T2609 |
T2607 |
dobj |
pool,ensure |
| R628 |
T2610 |
T2611 |
npadvmod |
replication,specific |
| R629 |
T2611 |
T2609 |
amod |
specific,pool |
| R630 |
T2612 |
T2611 |
punct |
-,specific |
| R631 |
T2613 |
T2609 |
prep |
of,pool |
| R632 |
T2614 |
T2615 |
compound |
HP1,molecules |
| R633 |
T2615 |
T2613 |
pobj |
molecules,of |
| R634 |
T2616 |
T2607 |
prep |
at,ensure |
| R635 |
T2617 |
T2618 |
compound |
replication,sites |
| R636 |
T2618 |
T2616 |
pobj |
sites,at |
| R637 |
T2619 |
T2618 |
prep |
in,sites |
| R638 |
T2620 |
T2621 |
amod |
pericentric,heterochromatin |
| R639 |
T2621 |
T2619 |
pobj |
heterochromatin,in |
| R640 |
T2622 |
T2607 |
prep |
during,ensure |
| R641 |
T2623 |
T2624 |
amod |
mid,late |
| R642 |
T2624 |
T2626 |
amod |
late,phase |
| R643 |
T2625 |
T2624 |
punct |
-,late |
| R644 |
T2626 |
T2622 |
pobj |
phase,during |
| R645 |
T2627 |
T2626 |
compound |
S,phase |
| R646 |
T2628 |
T2629 |
punct |
[,16 |
| R647 |
T2629 |
T2600 |
parataxis |
16,required |
| R648 |
T2630 |
T2629 |
punct |
],16 |
| R649 |
T2631 |
T2600 |
punct |
.,required |
| R650 |
T2633 |
T2634 |
advcl |
Taken,suggest |
| R651 |
T2635 |
T2633 |
advmod |
together,Taken |
| R652 |
T2636 |
T2634 |
punct |
", ",suggest |
| R653 |
T2637 |
T2638 |
det |
these,data |
| R654 |
T2638 |
T2634 |
nsubj |
data,suggest |
| R655 |
T2639 |
T2634 |
dobj |
roles,suggest |
| R656 |
T2640 |
T2639 |
prep |
for,roles |
| R657 |
T2641 |
T2640 |
pobj |
CAF,for |
| R658 |
T2642 |
T2641 |
punct |
-,CAF |
| R659 |
T2643 |
T2641 |
nummod |
1,CAF |
| R660 |
T2644 |
T2639 |
prep |
in,roles |
| R661 |
T2645 |
T2646 |
det |
the,formation |
| R662 |
T2646 |
T2644 |
pobj |
formation,in |
| R663 |
T2647 |
T2646 |
prep |
of,formation |
| R664 |
T2648 |
T2647 |
pobj |
heterochromatin,of |
| R665 |
T2649 |
T2644 |
cc |
and,in |
| R666 |
T2650 |
T2644 |
conj |
in,in |
| R667 |
T2651 |
T2652 |
det |
the,heritability |
| R668 |
T2652 |
T2650 |
pobj |
heritability,in |
| R669 |
T2653 |
T2652 |
prep |
of,heritability |
| R670 |
T2654 |
T2655 |
amod |
epigenetic,traits |
| R671 |
T2655 |
T2653 |
pobj |
traits,of |
| R672 |
T2656 |
T2634 |
punct |
.,suggest |
| R673 |
T2658 |
T2659 |
mark |
While,studied |
| R674 |
T2659 |
T2670 |
advcl |
studied,lack |
| R675 |
T2660 |
T2661 |
det |
the,function |
| R676 |
T2661 |
T2659 |
nsubjpass |
function,studied |
| R677 |
T2662 |
T2661 |
prep |
of,function |
| R678 |
T2663 |
T2664 |
det |
this,chaperone |
| R679 |
T2664 |
T2662 |
pobj |
chaperone,of |
| R680 |
T2665 |
T2666 |
amod |
evolutionary,conserved |
| R681 |
T2666 |
T2664 |
amod |
conserved,chaperone |
| R682 |
T2667 |
T2664 |
compound |
histone,chaperone |
| R683 |
T2668 |
T2659 |
aux |
has,studied |
| R684 |
T2669 |
T2659 |
auxpass |
been,studied |
| R685 |
T2671 |
T2659 |
advmod |
extensively,studied |
| R686 |
T2672 |
T2659 |
advmod |
biochemically,studied |
| R687 |
T2673 |
T2670 |
punct |
", ",lack |
| R688 |
T2674 |
T2670 |
nsubj |
we,lack |
| R689 |
T2675 |
T2670 |
advmod |
still,lack |
| R690 |
T2676 |
T2670 |
dobj |
information,lack |
| R691 |
T2677 |
T2676 |
prep |
concerning,information |
| R692 |
T2678 |
T2679 |
poss |
its,importance |
| R693 |
T2679 |
T2677 |
pobj |
importance,concerning |
| R694 |
T2680 |
T2679 |
prep |
during,importance |
| R695 |
T2681 |
T2682 |
amod |
early,development |
| R696 |
T2682 |
T2680 |
pobj |
development,during |
| R697 |
T2683 |
T2679 |
prep |
in,importance |
| R698 |
T2684 |
T2683 |
pobj |
mammals,in |
| R699 |
T2685 |
T2683 |
cc |
and,in |
| R700 |
T2686 |
T2683 |
conj |
in,in |
| R701 |
T2687 |
T2688 |
amod |
pluripotent,cells |
| R702 |
T2688 |
T2686 |
pobj |
cells,in |
| R703 |
T2689 |
T2690 |
amod |
such,as |
| R704 |
T2690 |
T2688 |
prep |
as,cells |
| R705 |
T2691 |
T2692 |
amod |
embryonic,stem |
| R706 |
T2692 |
T2693 |
nmod |
stem,cells |
| R707 |
T2693 |
T2690 |
pobj |
cells,as |
| R708 |
T2694 |
T2692 |
punct |
(,stem |
| R709 |
T2695 |
T2692 |
appos |
ES,stem |
| R710 |
T2696 |
T2693 |
punct |
),cells |
| R711 |
T2697 |
T2670 |
punct |
.,lack |
| R712 |
T2699 |
T2700 |
advmod |
Here,analyzed |
| R713 |
T2701 |
T2700 |
punct |
", ",analyzed |
| R714 |
T2702 |
T2700 |
nsubj |
we,analyzed |
| R715 |
T2703 |
T2700 |
aux |
have,analyzed |
| R716 |
T2704 |
T2705 |
det |
the,importance |
| R717 |
T2705 |
T2700 |
dobj |
importance,analyzed |
| R718 |
T2706 |
T2705 |
prep |
of,importance |
| R719 |
T2707 |
T2706 |
pobj |
CAF,of |
| R720 |
T2708 |
T2707 |
punct |
-,CAF |
| R721 |
T2709 |
T2707 |
nummod |
1,CAF |
| R722 |
T2710 |
T2705 |
prep |
during,importance |
| R723 |
T2711 |
T2712 |
amod |
early,development |
| R724 |
T2712 |
T2710 |
pobj |
development,during |
| R725 |
T2713 |
T2712 |
compound |
mouse,development |
| R726 |
T2714 |
T2700 |
prep |
by,analyzed |
| R727 |
T2715 |
T2716 |
amod |
genetic,ablation |
| R728 |
T2716 |
T2714 |
pobj |
ablation,by |
| R729 |
T2717 |
T2700 |
cc |
and,analyzed |
| R730 |
T2718 |
T2700 |
conj |
in,analyzed |
| R731 |
T2719 |
T2720 |
compound |
ES,cells |
| R732 |
T2720 |
T2718 |
pobj |
cells,in |
| R733 |
T2721 |
T2718 |
prep |
by,in |
| R734 |
T2722 |
T2721 |
pobj |
depletion,by |
| R735 |
T2723 |
T2722 |
acl |
using,depletion |
| R736 |
T2724 |
T2725 |
compound |
RNA,interference |
| R737 |
T2725 |
T2723 |
dobj |
interference,using |
| R738 |
T2726 |
T2725 |
punct |
(,interference |
| R739 |
T2727 |
T2725 |
appos |
RNAi,interference |
| R740 |
T2728 |
T2700 |
punct |
),analyzed |
| R741 |
T2729 |
T2700 |
punct |
.,analyzed |
| R742 |
T2731 |
T2732 |
nsubj |
We,show |
| R743 |
T2733 |
T2734 |
mark |
that,is |
| R744 |
T2734 |
T2732 |
ccomp |
is,show |
| R745 |
T2735 |
T2734 |
nsubj |
CAF,is |
| R746 |
T2736 |
T2735 |
punct |
-,CAF |
| R747 |
T2737 |
T2735 |
nummod |
1,CAF |
| R748 |
T2738 |
T2734 |
acomp |
essential,is |
| R749 |
T2739 |
T2738 |
prep |
for,essential |
| R750 |
T2740 |
T2739 |
pobj |
viability,for |
| R751 |
T2741 |
T2734 |
prep |
in,is |
| R752 |
T2742 |
T2743 |
amod |
early,embryos |
| R753 |
T2743 |
T2741 |
pobj |
embryos,in |
| R754 |
T2744 |
T2743 |
compound |
mouse,embryos |
| R755 |
T2745 |
T2743 |
cc |
and,embryos |
| R756 |
T2746 |
T2747 |
compound |
ES,cells |
| R757 |
T2747 |
T2743 |
conj |
cells,embryos |
| R758 |
T2748 |
T2732 |
punct |
.,show |
| R759 |
T2750 |
T2751 |
nsubj |
We,provide |
| R760 |
T2752 |
T2751 |
dobj |
evidence,provide |
| R761 |
T2753 |
T2754 |
mark |
that,required |
| R762 |
T2754 |
T2752 |
acl |
required,evidence |
| R763 |
T2755 |
T2754 |
nsubjpass |
CAF,required |
| R764 |
T2756 |
T2755 |
punct |
-,CAF |
| R765 |
T2757 |
T2755 |
nummod |
1,CAF |
| R766 |
T2758 |
T2754 |
auxpass |
is,required |
| R767 |
T2759 |
T2754 |
prep |
for,required |
| R768 |
T2760 |
T2761 |
det |
the,organization |
| R769 |
T2761 |
T2759 |
pobj |
organization,for |
| R770 |
T2762 |
T2761 |
amod |
spatial,organization |
| R771 |
T2763 |
T2761 |
cc |
and,organization |
| R772 |
T2764 |
T2765 |
amod |
epigenetic,marking |
| R773 |
T2765 |
T2761 |
conj |
marking,organization |
| R774 |
T2766 |
T2761 |
prep |
of,organization |
| R775 |
T2767 |
T2768 |
compound |
heterochromatin,domains |
| R776 |
T2768 |
T2766 |
pobj |
domains,of |
| R777 |
T2769 |
T2768 |
prep |
in,domains |
| R778 |
T2770 |
T2771 |
amod |
pluripotent,cells |
| R779 |
T2771 |
T2769 |
pobj |
cells,in |
| R780 |
T2772 |
T2771 |
amod |
embryonic,cells |
| R781 |
T2773 |
T2751 |
punct |
.,provide |
| R795 |
T7971 |
T7972 |
nsubj |
We,used |
| R805 |
T7973 |
T7974 |
compound |
gene,targeting |
| R806 |
T7974 |
T7972 |
dobj |
targeting,used |
| R807 |
T7975 |
T7972 |
prep |
in,used |
| R808 |
T7976 |
T7977 |
compound |
ES,cells |
| R809 |
T7977 |
T7975 |
pobj |
cells,in |
| R810 |
T7978 |
T7979 |
aux |
to,delete |
| R811 |
T8011 |
T8010 |
prep |
of,were |
| R812 |
T7979 |
T7972 |
advcl |
delete,used |
| R813 |
T8012 |
T8013 |
amod |
normal,size |
| R814 |
T8013 |
T8011 |
pobj |
size,of |
| R815 |
T8014 |
T8013 |
cc |
and,size |
| R816 |
T8015 |
T8013 |
conj |
weight,size |
| R817 |
T7980 |
T7979 |
dobj |
exon,delete |
| R818 |
T8016 |
T8010 |
punct |
", ",were |
| R819 |
T8017 |
T8010 |
conj |
displayed,were |
| R820 |
T8018 |
T8019 |
det |
no,abnormalities |
| R821 |
T8019 |
T8017 |
dobj |
abnormalities,displayed |
| R822 |
T7981 |
T7980 |
nummod |
3,exon |
| R823 |
T8020 |
T8019 |
amod |
obvious,abnormalities |
| R824 |
T7982 |
T7979 |
prep |
in,delete |
| R825 |
T8021 |
T8017 |
punct |
", ",displayed |
| R826 |
T8022 |
T8017 |
cc |
and,displayed |
| R827 |
T8023 |
T8017 |
conj |
were,displayed |
| R828 |
T8024 |
T8023 |
acomp |
fertile,were |
| R829 |
T8025 |
T8003 |
punct |
.,born |
| R830 |
T7983 |
T7984 |
det |
the,gene |
| R831 |
T8027 |
T8028 |
csubj |
Crossing,failed |
| R832 |
T8029 |
T8030 |
amod |
heterozygous,mice |
| R833 |
T8030 |
T8027 |
dobj |
mice,Crossing |
| R834 |
T8031 |
T8032 |
aux |
to,generate |
| R835 |
T8032 |
T8028 |
xcomp |
generate,failed |
| R836 |
T8033 |
T8034 |
amod |
viable,mice |
| R837 |
T8034 |
T8032 |
dobj |
mice,generate |
| R838 |
T8035 |
T8034 |
amod |
newborn,mice |
| R839 |
T8036 |
T8034 |
nmod |
Chaf1a,mice |
| R840 |
T7984 |
T7982 |
pobj |
gene,in |
| R841 |
T8037 |
T8036 |
punct |
−,Chaf1a |
| R842 |
T8038 |
T8036 |
punct |
/,Chaf1a |
| R843 |
T8039 |
T8036 |
punct |
−,Chaf1a |
| R844 |
T8040 |
T8028 |
punct |
.,failed |
| R845 |
T7985 |
T7984 |
compound |
Chaf1a,gene |
| R846 |
T8042 |
T8043 |
advmod |
Furthermore,detected |
| R847 |
T7986 |
T7984 |
punct |
", ",gene |
| R848 |
T8044 |
T8043 |
punct |
", ",detected |
| R849 |
T8045 |
T8046 |
det |
no,embryos |
| R850 |
T8046 |
T8043 |
nsubjpass |
embryos,detected |
| R851 |
T8047 |
T8046 |
amod |
homozygous,embryos |
| R852 |
T7987 |
T7988 |
dep |
which,encodes |
| R853 |
T8048 |
T8046 |
nmod |
Chaf1a,embryos |
| R854 |
T8049 |
T8048 |
punct |
−,Chaf1a |
| R855 |
T8050 |
T8048 |
punct |
/,Chaf1a |
| R856 |
T7988 |
T7984 |
relcl |
encodes,gene |
| R857 |
T8051 |
T8048 |
punct |
−,Chaf1a |
| R858 |
T8052 |
T8043 |
auxpass |
were,detected |
| R859 |
T8053 |
T8043 |
prep |
at,detected |
| R860 |
T7989 |
T7988 |
dobj |
p150CAF,encodes |
| R861 |
T8054 |
T8053 |
pobj |
any,at |
| R862 |
T8055 |
T8054 |
prep |
of,any |
| R863 |
T8056 |
T8057 |
det |
the,stages |
| R864 |
T7990 |
T7989 |
punct |
-,p150CAF |
| R865 |
T8057 |
T8055 |
pobj |
stages,of |
| R866 |
T8058 |
T8057 |
amod |
post-implantation,stages |
| R867 |
T8059 |
T8043 |
punct |
.,detected |
| R868 |
T7991 |
T7989 |
nummod |
1,p150CAF |
| R869 |
T8061 |
T8062 |
advmod |
However,detect |
| R870 |
T7992 |
T7993 |
punct |
(,1A |
| R871 |
T8063 |
T8062 |
punct |
", ",detect |
| R872 |
T8064 |
T8062 |
nsubj |
we,detect |
| R873 |
T8065 |
T8062 |
aux |
could,detect |
| R874 |
T7993 |
T7972 |
parataxis |
1A,used |
| R875 |
T8066 |
T8067 |
nmod |
Chaf1a,embryos |
| R876 |
T8067 |
T8062 |
dobj |
embryos,detect |
| R877 |
T8068 |
T8066 |
punct |
−,Chaf1a |
| R878 |
T7994 |
T7993 |
compound |
Figure,1A |
| R879 |
T8069 |
T8066 |
punct |
/,Chaf1a |
| R880 |
T8070 |
T8066 |
punct |
−,Chaf1a |
| R881 |
T8071 |
T8062 |
prep |
at,detect |
| R882 |
T8072 |
T8073 |
amod |
embryonic,day |
| R883 |
T8073 |
T8071 |
pobj |
day,at |
| R884 |
T8074 |
T8073 |
nummod |
4,day |
| R885 |
T8075 |
T8073 |
punct |
(,day |
| R886 |
T7995 |
T7993 |
punct |
),1A |
| R887 |
T8076 |
T8073 |
appos |
E4,day |
| R888 |
T7996 |
T7972 |
punct |
.,used |
| R889 |
T8077 |
T8062 |
punct |
),detect |
| R890 |
T8078 |
T8062 |
advcl |
using,detect |
| R891 |
T7998 |
T7999 |
nmod |
Chaf1a,mice |
| R892 |
T8079 |
T8080 |
det |
a,strategy |
| R893 |
T8080 |
T8078 |
dobj |
strategy,using |
| R894 |
T8081 |
T8080 |
compound |
PCR,strategy |
| R895 |
T8082 |
T8083 |
punct |
(,1B |
| R896 |
T7999 |
T8003 |
nsubjpass |
mice,born |
| R897 |
T8083 |
T8062 |
parataxis |
1B,detect |
| R898 |
T8084 |
T8083 |
compound |
Figure,1B |
| R899 |
T8085 |
T8083 |
punct |
),1B |
| R900 |
T8000 |
T7998 |
punct |
+,Chaf1a |
| R901 |
T8086 |
T8062 |
punct |
.,detect |
| R902 |
T8088 |
T8089 |
nsubj |
They,represent |
| R903 |
T8001 |
T7998 |
punct |
/,Chaf1a |
| R904 |
T8090 |
T8091 |
advmod |
only,10 |
| R905 |
T8091 |
T8092 |
nummod |
10,% |
| R906 |
T8002 |
T7998 |
punct |
−,Chaf1a |
| R907 |
T8092 |
T8089 |
dobj |
%,represent |
| R908 |
T8093 |
T8092 |
prep |
of,% |
| R909 |
T8094 |
T8095 |
compound |
E4,embryos |
| R910 |
T8004 |
T8003 |
auxpass |
were,born |
| R911 |
T8095 |
T8093 |
pobj |
embryos,of |
| R912 |
T8096 |
T8092 |
acl |
obtained,% |
| R913 |
T8097 |
T8096 |
prep |
from,obtained |
| R914 |
T8098 |
T8099 |
nmod |
Chaf1a,intercrosses |
| R915 |
T8005 |
T8003 |
prep |
at,born |
| R916 |
T8099 |
T8097 |
pobj |
intercrosses,from |
| R917 |
T8100 |
T8098 |
punct |
+,Chaf1a |
| R918 |
T8101 |
T8098 |
punct |
/,Chaf1a |
| R919 |
T8006 |
T8007 |
det |
a,frequency |
| R920 |
T8102 |
T8098 |
punct |
−,Chaf1a |
| R921 |
T8103 |
T8099 |
compound |
mice,intercrosses |
| R922 |
T8104 |
T8089 |
punct |
", ",represent |
| R923 |
T8105 |
T8089 |
advcl |
suggesting,represent |
| R924 |
T8007 |
T8005 |
pobj |
frequency,at |
| R925 |
T8106 |
T8107 |
mark |
that,degenerated |
| R926 |
T8107 |
T8105 |
ccomp |
degenerated,suggesting |
| R927 |
T8008 |
T8007 |
amod |
Mendelian,frequency |
| R928 |
T8108 |
T8109 |
amod |
more,half |
| R929 |
T8109 |
T8107 |
nsubj |
half,degenerated |
| R930 |
T8110 |
T8109 |
quantmod |
than,half |
| R931 |
T8111 |
T8109 |
prep |
of,half |
| R932 |
T8009 |
T8003 |
punct |
", ",born |
| R933 |
T8112 |
T8113 |
det |
the,embryos |
| R934 |
T8113 |
T8111 |
pobj |
embryos,of |
| R935 |
T8114 |
T8115 |
amod |
homozygous,mutant |
| R936 |
T8115 |
T8113 |
compound |
mutant,embryos |
| R937 |
T8116 |
T8107 |
aux |
had,degenerated |
| R938 |
T8010 |
T8003 |
conj |
were,born |
| R939 |
T8223 |
T8224 |
advmod |
Thus,allows |
| R940 |
T8117 |
T8107 |
prep |
before,degenerated |
| R941 |
T8118 |
T8119 |
det |
this,stage |
| R942 |
T8119 |
T8117 |
pobj |
stage,before |
| R943 |
T8120 |
T8089 |
punct |
.,represent |
| R944 |
T8225 |
T8224 |
punct |
", ",allows |
| R945 |
T8122 |
T8123 |
advmod |
Moreover,contained |
| R946 |
T8124 |
T8123 |
punct |
", ",contained |
| R947 |
T8125 |
T8126 |
compound |
mutant,embryos |
| R948 |
T8126 |
T8123 |
nsubj |
embryos,contained |
| R949 |
T8226 |
T8224 |
nsubj |
depletion,allows |
| R950 |
T8127 |
T8128 |
advmod |
only,16 |
| R951 |
T8128 |
T8131 |
nummod |
16,cells |
| R952 |
T8129 |
T8128 |
quantmod |
eight,16 |
| R953 |
T8227 |
T8226 |
prep |
of,depletion |
| R954 |
T8130 |
T8128 |
quantmod |
to,16 |
| R955 |
T8131 |
T8123 |
dobj |
cells,contained |
| R956 |
T8132 |
T8123 |
prep |
at,contained |
| R957 |
T8228 |
T8229 |
nmod |
p150CAF,protein |
| R958 |
T8133 |
T8134 |
det |
the,stage |
| R959 |
T8134 |
T8132 |
pobj |
stage,at |
| R960 |
T8135 |
T8134 |
compound |
E4,stage |
| R961 |
T8229 |
T8227 |
pobj |
protein,of |
| R962 |
T8136 |
T8123 |
punct |
", ",contained |
| R963 |
T8137 |
T8138 |
advmod |
instead,of |
| R964 |
T8138 |
T8123 |
prep |
of,contained |
| R965 |
T8230 |
T8228 |
punct |
-,p150CAF |
| R966 |
T8139 |
T8140 |
nummod |
32,cells |
| R967 |
T8140 |
T8138 |
pobj |
cells,of |
| R968 |
T8141 |
T8140 |
acl |
observed,cells |
| R969 |
T8231 |
T8228 |
nummod |
1,p150CAF |
| R970 |
T8142 |
T8141 |
prep |
for,observed |
| R971 |
T8143 |
T8144 |
amod |
wild,type |
| R972 |
T8144 |
T8146 |
nmod |
type,blastocysts |
| R973 |
T8232 |
T8226 |
prep |
from,depletion |
| R974 |
T8145 |
T8144 |
punct |
-,type |
| R975 |
T8146 |
T8142 |
pobj |
blastocysts,for |
| R976 |
T8147 |
T8144 |
cc |
or,type |
| R977 |
T8233 |
T8234 |
det |
this,stage |
| R978 |
T8148 |
T8144 |
conj |
heterozygous,type |
| R979 |
T8234 |
T8232 |
pobj |
stage,from |
| R980 |
T8149 |
T8150 |
punct |
(,1C |
| R981 |
T8150 |
T8123 |
parataxis |
1C,contained |
| R982 |
T8151 |
T8150 |
compound |
Figure,1C |
| R983 |
T8152 |
T8150 |
cc |
and,1C |
| R984 |
T8235 |
T8236 |
det |
a,maximum |
| R985 |
T8153 |
T8150 |
conj |
1D,1C |
| R986 |
T8154 |
T8150 |
punct |
),1C |
| R987 |
T8155 |
T8123 |
punct |
.,contained |
| R988 |
T8157 |
T8158 |
amod |
Further,analysis |
| R989 |
T8158 |
T8159 |
nsubj |
analysis,allowed |
| R990 |
T8236 |
T8224 |
dobj |
maximum,allows |
| R991 |
T8160 |
T8158 |
prep |
by,analysis |
| R992 |
T8161 |
T8162 |
compound |
light,microscopy |
| R993 |
T8237 |
T8236 |
prep |
of,maximum |
| R994 |
T8162 |
T8160 |
pobj |
microscopy,by |
| R995 |
T8238 |
T8239 |
nummod |
two,divisions |
| R996 |
T8163 |
T8162 |
acl |
using,microscopy |
| R997 |
T8164 |
T8163 |
dobj |
immunofluorescence,using |
| R998 |
T8239 |
T8237 |
pobj |
divisions,of |
| R999 |
T8165 |
T8166 |
punct |
(,IF |
| R1000 |
T8166 |
T8164 |
parataxis |
IF,immunofluorescence |
| R1001 |
T8167 |
T8166 |
punct |
),IF |
| R1002 |
T8240 |
T8239 |
amod |
additional,divisions |
| R1003 |
T8168 |
T8169 |
nsubj |
us,compare |
| R1004 |
T8169 |
T8159 |
ccomp |
compare,allowed |
| R1005 |
T8170 |
T8169 |
aux |
to,compare |
| R1006 |
T8241 |
T8239 |
compound |
cell,divisions |
| R1007 |
T8171 |
T8172 |
amod |
wild,type |
| R1008 |
T8172 |
T8174 |
nmod |
type,embryos |
| R1009 |
T8173 |
T8172 |
punct |
-,type |
| R1010 |
T8242 |
T8224 |
prep |
before,allows |
| R1011 |
T8174 |
T8169 |
dobj |
embryos,compare |
| R1012 |
T8175 |
T8172 |
cc |
and,type |
| R1013 |
T8176 |
T8177 |
npadvmod |
p150CAF,depleted |
| R1014 |
T8177 |
T8172 |
conj |
depleted,type |
| R1015 |
T8243 |
T8244 |
amod |
developmental,arrest |
| R1016 |
T8244 |
T8242 |
pobj |
arrest,before |
| R1017 |
T8178 |
T8176 |
punct |
-,p150CAF |
| R1018 |
T8245 |
T8224 |
punct |
.,allows |
| R1019 |
T8179 |
T8176 |
nummod |
1,p150CAF |
| R1020 |
T8180 |
T8177 |
punct |
-,depleted |
| R1021 |
T8247 |
T8248 |
advmod |
Strikingly,found |
| R1022 |
T8181 |
T8159 |
punct |
.,allowed |
| R1023 |
T8183 |
T8184 |
det |
A,loss |
| R1024 |
T8184 |
T8185 |
nsubjpass |
loss,detected |
| R1025 |
T8249 |
T8248 |
punct |
", ",found |
| R1026 |
T8186 |
T8184 |
prep |
of,loss |
| R1027 |
T8187 |
T8188 |
nmod |
p150CAF,staining |
| R1028 |
T8188 |
T8186 |
pobj |
staining,of |
| R1029 |
T8189 |
T8187 |
punct |
-,p150CAF |
| R1030 |
T8250 |
T8248 |
nsubj |
we,found |
| R1031 |
T8190 |
T8187 |
nummod |
1,p150CAF |
| R1032 |
T8191 |
T8185 |
aux |
could,detected |
| R1033 |
T8251 |
T8252 |
mark |
that,appeared |
| R1034 |
T8192 |
T8185 |
neg |
not,detected |
| R1035 |
T8193 |
T8185 |
auxpass |
be,detected |
| R1036 |
T8194 |
T8185 |
prep |
before,detected |
| R1037 |
T8195 |
T8196 |
det |
the,stage |
| R1038 |
T8252 |
T8248 |
ccomp |
appeared,found |
| R1039 |
T8196 |
T8194 |
pobj |
stage,before |
| R1040 |
T8197 |
T8198 |
nummod |
eight,cell |
| R1041 |
T8198 |
T8196 |
compound |
cell,stage |
| R1042 |
T8199 |
T8198 |
punct |
-,cell |
| R1043 |
T8200 |
T8201 |
punct |
(,data |
| R1044 |
T8201 |
T8185 |
meta |
data,detected |
| R1045 |
T8253 |
T8254 |
det |
the,organization |
| R1046 |
T8202 |
T8201 |
amod |
unpublished,data |
| R1047 |
T8203 |
T8201 |
punct |
),data |
| R1048 |
T8204 |
T8185 |
advcl |
suggesting,detected |
| R1049 |
T8254 |
T8252 |
nsubj |
organization,appeared |
| R1050 |
T8205 |
T8206 |
mark |
that,is |
| R1051 |
T8206 |
T8204 |
ccomp |
is,suggesting |
| R1052 |
T8207 |
T8208 |
advmod |
maternally,contributed |
| R1053 |
T8255 |
T8254 |
amod |
nuclear,organization |
| R1054 |
T8208 |
T8209 |
amod |
contributed,protein |
| R1055 |
T8209 |
T8206 |
nsubj |
protein,is |
| R1056 |
T8210 |
T8206 |
acomp |
present,is |
| R1057 |
T8256 |
T8254 |
prep |
of,organization |
| R1058 |
T8211 |
T8206 |
prep |
in,is |
| R1059 |
T8212 |
T8213 |
det |
the,embryo |
| R1060 |
T8213 |
T8211 |
pobj |
embryo,in |
| R1061 |
T8257 |
T8256 |
pobj |
heterochromatin,of |
| R1062 |
T8214 |
T8206 |
prep |
up,is |
| R1063 |
T8215 |
T8214 |
prep |
to,up |
| R1064 |
T8216 |
T8217 |
det |
the,stage |
| R1065 |
T8258 |
T8252 |
oprd |
abnormal,appeared |
| R1066 |
T8217 |
T8215 |
pobj |
stage,to |
| R1067 |
T8218 |
T8219 |
nummod |
four,cell |
| R1068 |
T8219 |
T8217 |
compound |
cell,stage |
| R1069 |
T8259 |
T8252 |
prep |
in,appeared |
| R1070 |
T8220 |
T8219 |
punct |
-,cell |
| R1071 |
T8221 |
T8185 |
punct |
.,detected |
| R1072 |
T8260 |
T8261 |
det |
the,nuclei |
| R1073 |
T8261 |
T8259 |
pobj |
nuclei,in |
| R1074 |
T8262 |
T8261 |
prep |
of,nuclei |
| R1075 |
T8328 |
T8326 |
acl |
called,structures |
| R1076 |
T8329 |
T8328 |
oprd |
chromocenters,called |
| R1077 |
T8263 |
T8264 |
nmod |
Chaf1a,embryos |
| R1078 |
T8330 |
T8331 |
punct |
[,20 |
| R1079 |
T8331 |
T8328 |
parataxis |
20,called |
| R1080 |
T8332 |
T8331 |
punct |
],20 |
| R1081 |
T8264 |
T8262 |
pobj |
embryos,of |
| R1082 |
T8333 |
T8326 |
punct |
", ",structures |
| R1083 |
T8334 |
T8335 |
dep |
which,visualized |
| R1084 |
T8265 |
T8263 |
punct |
−,Chaf1a |
| R1085 |
T8335 |
T8326 |
relcl |
visualized,structures |
| R1086 |
T8266 |
T8263 |
punct |
/,Chaf1a |
| R1087 |
T8336 |
T8335 |
auxpass |
are,visualized |
| R1088 |
T8267 |
T8263 |
punct |
−,Chaf1a |
| R1089 |
T8337 |
T8335 |
prep |
as,visualized |
| R1090 |
T8338 |
T8339 |
npadvmod |
DAPI,dense |
| R1091 |
T8339 |
T8341 |
amod |
dense,foci |
| R1092 |
T8340 |
T8339 |
punct |
-,dense |
| R1093 |
T8341 |
T8337 |
pobj |
foci,as |
| R1094 |
T8342 |
T8343 |
punct |
(,1C |
| R1095 |
T8268 |
T8248 |
punct |
.,found |
| R1096 |
T8343 |
T8322 |
parataxis |
1C,form |
| R1097 |
T8344 |
T8343 |
compound |
Figure,1C |
| R1098 |
T8345 |
T8343 |
punct |
),1C |
| R1099 |
T8270 |
T8271 |
amod |
Pericentric,heterochromatin |
| R1100 |
T8346 |
T8306 |
punct |
.,cluster |
| R1101 |
T8348 |
T8349 |
det |
These,structures |
| R1102 |
T8349 |
T8350 |
nsubjpass |
structures,detected |
| R1103 |
T8271 |
T8272 |
nsubjpass |
heterochromatin,visualized |
| R1104 |
T8351 |
T8350 |
auxpass |
were,detected |
| R1105 |
T8352 |
T8350 |
neg |
not,detected |
| R1106 |
T8273 |
T8271 |
punct |
", ",heterochromatin |
| R1107 |
T8353 |
T8350 |
prep |
in,detected |
| R1108 |
T8354 |
T8355 |
nmod |
Chaf1a,embryos |
| R1109 |
T8355 |
T8353 |
pobj |
embryos,in |
| R1110 |
T8356 |
T8354 |
punct |
−,Chaf1a |
| R1111 |
T8274 |
T8275 |
det |
the,component |
| R1112 |
T8357 |
T8354 |
punct |
/,Chaf1a |
| R1113 |
T8358 |
T8354 |
punct |
−,Chaf1a |
| R1114 |
T8359 |
T8360 |
punct |
(,1D |
| R1115 |
T8275 |
T8271 |
appos |
component,heterochromatin |
| R1116 |
T8360 |
T8350 |
parataxis |
1D,detected |
| R1117 |
T8361 |
T8360 |
compound |
Figure,1D |
| R1118 |
T8362 |
T8360 |
punct |
),1D |
| R1119 |
T8276 |
T8275 |
amod |
major,component |
| R1120 |
T8363 |
T8350 |
punct |
.,detected |
| R1121 |
T8365 |
T8366 |
mark |
Since,are |
| R1122 |
T8277 |
T8275 |
prep |
of,component |
| R1123 |
T8366 |
T8374 |
advcl |
are,decided |
| R1124 |
T8367 |
T8368 |
compound |
chromatin,architecture |
| R1125 |
T8368 |
T8366 |
nsubj |
architecture,are |
| R1126 |
T8278 |
T8279 |
amod |
constitutive,heterochromatin |
| R1127 |
T8369 |
T8368 |
cc |
and,architecture |
| R1128 |
T8370 |
T8371 |
amod |
higher,order |
| R1129 |
T8371 |
T8373 |
compound |
order,structures |
| R1130 |
T8372 |
T8371 |
punct |
-,order |
| R1131 |
T8279 |
T8277 |
pobj |
heterochromatin,of |
| R1132 |
T8373 |
T8368 |
conj |
structures,architecture |
| R1133 |
T8280 |
T8272 |
punct |
", ",visualized |
| R1134 |
T8375 |
T8366 |
acomp |
important,are |
| R1135 |
T8376 |
T8375 |
prep |
for,important |
| R1136 |
T8377 |
T8378 |
compound |
genome,function |
| R1137 |
T8281 |
T8272 |
aux |
can,visualized |
| R1138 |
T8378 |
T8376 |
pobj |
function,for |
| R1139 |
T8379 |
T8380 |
punct |
[,21 |
| R1140 |
T8282 |
T8272 |
advmod |
easily,visualized |
| R1141 |
T8380 |
T8366 |
parataxis |
21,are |
| R1142 |
T8381 |
T8380 |
punct |
],21 |
| R1143 |
T8382 |
T8374 |
punct |
", ",decided |
| R1144 |
T8383 |
T8374 |
nsubj |
we,decided |
| R1145 |
T8384 |
T8385 |
aux |
to,characterize |
| R1146 |
T8385 |
T8374 |
xcomp |
characterize,decided |
| R1147 |
T8283 |
T8272 |
auxpass |
be,visualized |
| R1148 |
T8386 |
T8387 |
det |
this,phenotype |
| R1149 |
T8387 |
T8385 |
dobj |
phenotype,characterize |
| R1150 |
T8388 |
T8385 |
prep |
in,characterize |
| R1151 |
T8284 |
T8272 |
prep |
in,visualized |
| R1152 |
T8389 |
T8390 |
amod |
more,detail |
| R1153 |
T8390 |
T8388 |
pobj |
detail,in |
| R1154 |
T8391 |
T8374 |
punct |
.,decided |
| R1155 |
T8285 |
T8286 |
compound |
interphase,nuclei |
| R1156 |
T8393 |
T8394 |
prep |
For,examined |
| R1157 |
T8286 |
T8284 |
pobj |
nuclei,in |
| R1158 |
T8395 |
T8396 |
det |
this,purpose |
| R1159 |
T8396 |
T8393 |
pobj |
purpose,For |
| R1160 |
T8397 |
T8394 |
punct |
", ",examined |
| R1161 |
T8287 |
T8272 |
prep |
by,visualized |
| R1162 |
T8398 |
T8394 |
nsubj |
we,examined |
| R1163 |
T8399 |
T8400 |
det |
the,status |
| R1164 |
T8400 |
T8394 |
dobj |
status,examined |
| R1165 |
T8288 |
T8289 |
det |
the,DAPI |
| R1166 |
T8401 |
T8400 |
prep |
of,status |
| R1167 |
T8402 |
T8403 |
compound |
heterochromatin,organization |
| R1168 |
T8403 |
T8401 |
pobj |
organization,of |
| R1169 |
T8289 |
T8287 |
pobj |
DAPI,by |
| R1170 |
T8404 |
T8394 |
prep |
between,examined |
| R1171 |
T8405 |
T8406 |
det |
the,stages |
| R1172 |
T8406 |
T8404 |
pobj |
stages,between |
| R1173 |
T8407 |
T8408 |
nummod |
two,cell |
| R1174 |
T8290 |
T8289 |
compound |
fluorochrome,DAPI |
| R1175 |
T8408 |
T8406 |
nmod |
cell,stages |
| R1176 |
T8409 |
T8408 |
punct |
-,cell |
| R1177 |
T8410 |
T8408 |
cc |
and,cell |
| R1178 |
T8291 |
T8287 |
cc |
and,by |
| R1179 |
T8411 |
T8408 |
conj |
blastocyst,cell |
| R1180 |
T8412 |
T8394 |
punct |
.,examined |
| R1181 |
T8292 |
T8287 |
conj |
by,by |
| R1182 |
T8414 |
T8415 |
prep |
In,is |
| R1183 |
T8293 |
T8292 |
pcomp |
immunostaining,by |
| R1184 |
T8416 |
T8417 |
nummod |
two,cell |
| R1185 |
T8417 |
T8419 |
nmod |
cell,stage |
| R1186 |
T8294 |
T8293 |
prep |
with,immunostaining |
| R1187 |
T8418 |
T8417 |
punct |
-,cell |
| R1188 |
T8419 |
T8420 |
nmod |
stage,embryos |
| R1189 |
T8420 |
T8414 |
pobj |
embryos,In |
| R1190 |
T8295 |
T8294 |
pobj |
HP1α,with |
| R1191 |
T8421 |
T8422 |
amod |
wild,type |
| R1192 |
T8422 |
T8420 |
compound |
type,embryos |
| R1193 |
T8423 |
T8422 |
punct |
-,type |
| R1194 |
T8296 |
T8297 |
punct |
[,16 |
| R1195 |
T8424 |
T8415 |
punct |
", ",is |
| R1196 |
T8425 |
T8426 |
compound |
DAPI,staining |
| R1197 |
T8426 |
T8415 |
nsubj |
staining,is |
| R1198 |
T8297 |
T8272 |
parataxis |
16,visualized |
| R1199 |
T8427 |
T8415 |
acomp |
diffuse,is |
| R1200 |
T8428 |
T8427 |
cc |
and,diffuse |
| R1201 |
T8429 |
T8427 |
conj |
fibrillar,diffuse |
| R1202 |
T8430 |
T8415 |
punct |
", ",is |
| R1203 |
T8298 |
T8297 |
punct |
",",16 |
| R1204 |
T8431 |
T8415 |
prep |
with,is |
| R1205 |
T8432 |
T8431 |
pobj |
regions,with |
| R1206 |
T8299 |
T8297 |
appos |
17,16 |
| R1207 |
T8300 |
T8301 |
punct |
–,19 |
| R1208 |
T8301 |
T8299 |
prep |
19,17 |
| R1209 |
T8302 |
T8297 |
punct |
],16 |
| R1210 |
T8433 |
T8432 |
prep |
of,regions |
| R1211 |
T8303 |
T8272 |
punct |
.,visualized |
| R1212 |
T8434 |
T8435 |
amod |
higher,density |
| R1213 |
T8435 |
T8433 |
pobj |
density,of |
| R1214 |
T8436 |
T8432 |
prep |
around,regions |
| R1215 |
T8305 |
T8306 |
prep |
In,cluster |
| R1216 |
T8437 |
T8438 |
det |
the,bodies |
| R1217 |
T8438 |
T8436 |
pobj |
bodies,around |
| R1218 |
T8439 |
T8440 |
amod |
nucleolar,precursor |
| R1219 |
T8307 |
T8308 |
amod |
wild,type |
| R1220 |
T8440 |
T8438 |
compound |
precursor,bodies |
| R1221 |
T8441 |
T8442 |
punct |
(,1E |
| R1222 |
T8442 |
T8415 |
parataxis |
1E,is |
| R1223 |
T8443 |
T8442 |
compound |
Figure,1E |
| R1224 |
T8444 |
T8442 |
punct |
),1E |
| R1225 |
T8308 |
T8310 |
compound |
type,blastocysts |
| R1226 |
T8445 |
T8415 |
punct |
.,is |
| R1227 |
T8447 |
T8448 |
compound |
Heterochromatin,domains |
| R1228 |
T8309 |
T8308 |
punct |
-,type |
| R1229 |
T8448 |
T8449 |
nsubjpass |
domains,assembled |
| R1230 |
T8310 |
T8305 |
pobj |
blastocysts,In |
| R1231 |
T8450 |
T8449 |
auxpass |
are,assembled |
| R1232 |
T8451 |
T8449 |
advmod |
progressively,assembled |
| R1233 |
T8452 |
T8449 |
prep |
into,assembled |
| R1234 |
T8311 |
T8305 |
cc |
and,In |
| R1235 |
T8453 |
T8454 |
npadvmod |
DAPI,dense |
| R1236 |
T8454 |
T8456 |
amod |
dense,foci |
| R1237 |
T8455 |
T8454 |
punct |
-,dense |
| R1238 |
T8456 |
T8452 |
pobj |
foci,into |
| R1239 |
T8312 |
T8305 |
conj |
in,In |
| R1240 |
T8457 |
T8449 |
prep |
between,assembled |
| R1241 |
T8458 |
T8459 |
det |
the,stages |
| R1242 |
T8313 |
T8314 |
nmod |
mouse,cells |
| R1243 |
T8459 |
T8457 |
pobj |
stages,between |
| R1244 |
T8460 |
T8461 |
nummod |
four,cell |
| R1245 |
T8461 |
T8459 |
nmod |
cell,stages |
| R1246 |
T8462 |
T8461 |
punct |
-,cell |
| R1247 |
T8463 |
T8461 |
cc |
and,cell |
| R1248 |
T8464 |
T8465 |
nummod |
32,cell |
| R1249 |
T8314 |
T8312 |
pobj |
cells,in |
| R1250 |
T8465 |
T8461 |
conj |
cell,cell |
| R1251 |
T8466 |
T8465 |
punct |
-,cell |
| R1252 |
T8467 |
T8459 |
compound |
blastocyst,stages |
| R1253 |
T8468 |
T8469 |
punct |
(,1F |
| R1254 |
T8315 |
T8314 |
amod |
somatic,cells |
| R1255 |
T8469 |
T8449 |
parataxis |
1F,assembled |
| R1256 |
T8470 |
T8469 |
compound |
Figure,1F |
| R1257 |
T8471 |
T8469 |
punct |
),1F |
| R1258 |
T8472 |
T8449 |
punct |
.,assembled |
| R1259 |
T8316 |
T8306 |
punct |
", ",cluster |
| R1260 |
T8474 |
T8475 |
nsubj |
Localization,confirmed |
| R1261 |
T8317 |
T8318 |
amod |
pericentric,domains |
| R1262 |
T8476 |
T8474 |
prep |
of,Localization |
| R1263 |
T8477 |
T8476 |
pobj |
HP1α,of |
| R1264 |
T8318 |
T8306 |
nsubj |
domains,cluster |
| R1265 |
T8478 |
T8479 |
mark |
that,correspond |
| R1266 |
T8479 |
T8475 |
ccomp |
correspond,confirmed |
| R1267 |
T8480 |
T8481 |
det |
the,structures |
| R1268 |
T8319 |
T8318 |
compound |
heterochromatin,domains |
| R1269 |
T8481 |
T8479 |
nsubj |
structures,correspond |
| R1270 |
T8482 |
T8481 |
acl |
visualized,structures |
| R1271 |
T8483 |
T8482 |
prep |
by,visualized |
| R1272 |
T8320 |
T8306 |
advmod |
together,cluster |
| R1273 |
T8484 |
T8485 |
compound |
DAPI,staining |
| R1274 |
T8485 |
T8483 |
pobj |
staining,by |
| R1275 |
T8486 |
T8479 |
prep |
to,correspond |
| R1276 |
T8321 |
T8306 |
cc |
and,cluster |
| R1277 |
T8487 |
T8488 |
amod |
constitutive,heterochromatin |
| R1278 |
T8488 |
T8486 |
pobj |
heterochromatin,to |
| R1279 |
T8489 |
T8490 |
punct |
(,1E |
| R1280 |
T8322 |
T8306 |
conj |
form,cluster |
| R1281 |
T8490 |
T8475 |
parataxis |
1E,confirmed |
| R1282 |
T8491 |
T8490 |
compound |
Figure,1E |
| R1283 |
T8492 |
T8490 |
punct |
),1E |
| R1284 |
T8323 |
T8324 |
amod |
higher,order |
| R1285 |
T8493 |
T8475 |
punct |
.,confirmed |
| R1286 |
T8495 |
T8496 |
advmod |
Thus,modified |
| R1287 |
T8324 |
T8326 |
compound |
order,structures |
| R1288 |
T8497 |
T8496 |
punct |
", ",modified |
| R1289 |
T8498 |
T8499 |
det |
the,organization |
| R1290 |
T8325 |
T8324 |
punct |
-,order |
| R1291 |
T8499 |
T8496 |
nsubjpass |
organization,modified |
| R1292 |
T8500 |
T8499 |
amod |
nuclear,organization |
| R1293 |
T8501 |
T8499 |
prep |
of,organization |
| R1294 |
T8326 |
T8322 |
dobj |
structures,form |
| R1295 |
T8502 |
T8501 |
pobj |
heterochromatin,of |
| R1296 |
T8503 |
T8496 |
auxpass |
is,modified |
| R1297 |
T8504 |
T8496 |
advmod |
dramatically,modified |
| R1298 |
T8505 |
T8496 |
prep |
during,modified |
| R1299 |
T8506 |
T8507 |
amod |
pre-implantation,development |
| R1300 |
T8507 |
T8505 |
pobj |
development,during |
| R1301 |
T8327 |
T8326 |
compound |
chromatin,structures |
| R1302 |
T8508 |
T8496 |
punct |
", ",modified |
| R1303 |
T8509 |
T8496 |
prep |
between,modified |
| R1304 |
T8510 |
T8511 |
det |
the,stages |
| R1305 |
T8538 |
T8534 |
conj |
16,eight |
| R1306 |
T8511 |
T8509 |
pobj |
stages,between |
| R1307 |
T8512 |
T8513 |
nummod |
two,cell |
| R1308 |
T8513 |
T8511 |
nmod |
cell,stages |
| R1309 |
T8514 |
T8513 |
punct |
-,cell |
| R1310 |
T8515 |
T8513 |
cc |
and,cell |
| R1311 |
T8539 |
T8535 |
punct |
-,cell |
| R1312 |
T8516 |
T8513 |
conj |
blastocyst,cell |
| R1313 |
T8517 |
T8496 |
punct |
.,modified |
| R1314 |
T8540 |
T8520 |
punct |
", ",were |
| R1315 |
T8519 |
T8520 |
prep |
In,were |
| R1316 |
T8521 |
T8522 |
nmod |
Chaf1a,embryos |
| R1317 |
T8541 |
T8542 |
npadvmod |
DAPI,dense |
| R1318 |
T8522 |
T8519 |
pobj |
embryos,In |
| R1319 |
T8523 |
T8521 |
punct |
−,Chaf1a |
| R1320 |
T8542 |
T8544 |
amod |
dense,foci |
| R1321 |
T8524 |
T8521 |
punct |
/,Chaf1a |
| R1322 |
T8525 |
T8521 |
punct |
−,Chaf1a |
| R1323 |
T8526 |
T8522 |
compound |
E4,embryos |
| R1324 |
T8543 |
T8542 |
punct |
-,dense |
| R1325 |
T8527 |
T8522 |
punct |
", ",embryos |
| R1326 |
T8528 |
T8529 |
dep |
which,arrested |
| R1327 |
T8529 |
T8522 |
relcl |
arrested,embryos |
| R1328 |
T8544 |
T8520 |
nsubj |
foci,were |
| R1329 |
T8530 |
T8529 |
auxpass |
are,arrested |
| R1330 |
T8531 |
T8529 |
prep |
between,arrested |
| R1331 |
T8532 |
T8533 |
det |
the,stage |
| R1332 |
T8545 |
T8546 |
advmod |
barely,detectable |
| R1333 |
T8533 |
T8531 |
pobj |
stage,between |
| R1334 |
T8534 |
T8535 |
nummod |
eight,cell |
| R1335 |
T8535 |
T8533 |
compound |
cell,stage |
| R1336 |
T8546 |
T8520 |
acomp |
detectable,were |
| R1337 |
T8536 |
T8534 |
punct |
-,eight |
| R1338 |
T8537 |
T8534 |
cc |
and,eight |
| R1339 |
T8547 |
T8548 |
punct |
(,1D |
| R1340 |
T8548 |
T8520 |
parataxis |
1D,were |
| R1341 |
T8549 |
T8548 |
compound |
Figure,1D |
| R1342 |
T8550 |
T8548 |
punct |
),1D |
| R1343 |
T8643 |
T8642 |
punct |
-,type |
| R1344 |
T8551 |
T8520 |
punct |
.,were |
| R1345 |
T8644 |
T8645 |
punct |
(,compare |
| R1346 |
T8645 |
T8617 |
parataxis |
compare,is |
| R1347 |
T8553 |
T8554 |
advmod |
Instead,was |
| R1348 |
T8646 |
T8647 |
compound |
Figure,1D |
| R1349 |
T8647 |
T8645 |
dobj |
1D,compare |
| R1350 |
T8648 |
T8647 |
cc |
and,1D |
| R1351 |
T8649 |
T8647 |
conj |
1F,1D |
| R1352 |
T8650 |
T8645 |
punct |
),compare |
| R1353 |
T8651 |
T8617 |
punct |
.,is |
| R1354 |
T8653 |
T8654 |
det |
These,data |
| R1355 |
T8654 |
T8655 |
nsubj |
data,evidence |
| R1356 |
T8656 |
T8657 |
det |
a,role |
| R1357 |
T8657 |
T8655 |
dobj |
role,evidence |
| R1358 |
T8555 |
T8554 |
punct |
", ",was |
| R1359 |
T8658 |
T8657 |
amod |
key,role |
| R1360 |
T8659 |
T8657 |
prep |
for,role |
| R1361 |
T8660 |
T8659 |
pobj |
p150CAF,for |
| R1362 |
T8661 |
T8660 |
punct |
-,p150CAF |
| R1363 |
T8556 |
T8557 |
compound |
DAPI,staining |
| R1364 |
T8662 |
T8660 |
nummod |
1,p150CAF |
| R1365 |
T8663 |
T8655 |
prep |
during,evidence |
| R1366 |
T8664 |
T8665 |
amod |
pre-implantation,development |
| R1367 |
T8665 |
T8663 |
pobj |
development,during |
| R1368 |
T8557 |
T8554 |
nsubj |
staining,was |
| R1369 |
T8666 |
T8655 |
punct |
", ",evidence |
| R1370 |
T8667 |
T8655 |
cc |
and,evidence |
| R1371 |
T8668 |
T8655 |
conj |
reveal,evidence |
| R1372 |
T8558 |
T8554 |
acomp |
diffuse,was |
| R1373 |
T8669 |
T8670 |
mark |
that,required |
| R1374 |
T8670 |
T8668 |
ccomp |
required,reveal |
| R1375 |
T8671 |
T8672 |
det |
this,protein |
| R1376 |
T8559 |
T8554 |
prep |
within,was |
| R1377 |
T8672 |
T8670 |
nsubjpass |
protein,required |
| R1378 |
T8673 |
T8670 |
auxpass |
is,required |
| R1379 |
T8674 |
T8670 |
prep |
for,required |
| R1380 |
T8675 |
T8676 |
det |
the,organization |
| R1381 |
T8560 |
T8561 |
det |
the,nucleus |
| R1382 |
T8676 |
T8674 |
pobj |
organization,for |
| R1383 |
T8677 |
T8676 |
amod |
proper,organization |
| R1384 |
T8678 |
T8679 |
nummod |
3,D |
| R1385 |
T8561 |
T8559 |
pobj |
nucleus,within |
| R1386 |
T8679 |
T8676 |
compound |
D,organization |
| R1387 |
T8680 |
T8679 |
punct |
-,D |
| R1388 |
T8681 |
T8676 |
prep |
of,organization |
| R1389 |
T8562 |
T8554 |
punct |
", ",was |
| R1390 |
T8682 |
T8681 |
pobj |
heterochromatin,of |
| R1391 |
T8563 |
T8554 |
prep |
with,was |
| R1392 |
T8683 |
T8670 |
prep |
within,required |
| R1393 |
T8564 |
T8563 |
pobj |
regions,with |
| R1394 |
T8684 |
T8685 |
amod |
embryonic,nuclei |
| R1395 |
T8685 |
T8683 |
pobj |
nuclei,within |
| R1396 |
T8686 |
T8685 |
compound |
cell,nuclei |
| R1397 |
T8565 |
T8564 |
prep |
of,regions |
| R1398 |
T8687 |
T8655 |
punct |
.,evidence |
| R1399 |
T8689 |
T8690 |
advmod |
Next,wondered |
| R1400 |
T8566 |
T8567 |
amod |
higher,density |
| R1401 |
T8691 |
T8690 |
punct |
", ",wondered |
| R1402 |
T8692 |
T8690 |
nsubj |
we,wondered |
| R1403 |
T8693 |
T8694 |
mark |
whether,observed |
| R1404 |
T8694 |
T8690 |
ccomp |
observed,wondered |
| R1405 |
T8695 |
T8696 |
det |
a,requirement |
| R1406 |
T8696 |
T8694 |
nsubjpass |
requirement,observed |
| R1407 |
T8567 |
T8565 |
pobj |
density,of |
| R1408 |
T8697 |
T8696 |
amod |
similar,requirement |
| R1409 |
T8698 |
T8696 |
prep |
for,requirement |
| R1410 |
T8568 |
T8567 |
prep |
around,density |
| R1411 |
T8699 |
T8698 |
pobj |
CAF,for |
| R1412 |
T8700 |
T8699 |
punct |
-,CAF |
| R1413 |
T8701 |
T8699 |
nummod |
1,CAF |
| R1414 |
T8702 |
T8694 |
aux |
could,observed |
| R1415 |
T8569 |
T8570 |
det |
the,nucleoli |
| R1416 |
T8703 |
T8694 |
advmod |
also,observed |
| R1417 |
T8704 |
T8694 |
auxpass |
be,observed |
| R1418 |
T8705 |
T8694 |
prep |
in,observed |
| R1419 |
T8570 |
T8568 |
pobj |
nucleoli,around |
| R1420 |
T8706 |
T8707 |
compound |
ES,cells |
| R1421 |
T8707 |
T8705 |
pobj |
cells,in |
| R1422 |
T8708 |
T8707 |
punct |
", ",cells |
| R1423 |
T8571 |
T8568 |
cc |
and,around |
| R1424 |
T8709 |
T8710 |
dep |
which,derived |
| R1425 |
T8710 |
T8707 |
relcl |
derived,cells |
| R1426 |
T8711 |
T8710 |
auxpass |
are,derived |
| R1427 |
T8712 |
T8710 |
prep |
from,derived |
| R1428 |
T8572 |
T8568 |
conj |
at,around |
| R1429 |
T8713 |
T8714 |
det |
the,mass |
| R1430 |
T8714 |
T8712 |
pobj |
mass,from |
| R1431 |
T8715 |
T8714 |
nmod |
blastocyst,mass |
| R1432 |
T8716 |
T8717 |
amod |
inner,cell |
| R1433 |
T8573 |
T8574 |
det |
the,periphery |
| R1434 |
T8717 |
T8714 |
compound |
cell,mass |
| R1435 |
T8718 |
T8690 |
punct |
.,wondered |
| R1436 |
T8574 |
T8572 |
pobj |
periphery,at |
| R1437 |
T8720 |
T8721 |
prep |
Given,derived |
| R1438 |
T8722 |
T8723 |
det |
the,arrest |
| R1439 |
T8575 |
T8574 |
prep |
of,periphery |
| R1440 |
T8723 |
T8720 |
pobj |
arrest,Given |
| R1441 |
T8724 |
T8723 |
amod |
early,arrest |
| R1442 |
T8725 |
T8723 |
amod |
developmental,arrest |
| R1443 |
T8576 |
T8577 |
det |
the,nuclei |
| R1444 |
T8726 |
T8723 |
acl |
observed,arrest |
| R1445 |
T8727 |
T8726 |
prep |
in,observed |
| R1446 |
T8728 |
T8729 |
nmod |
Chaf1a,embryos |
| R1447 |
T8577 |
T8575 |
pobj |
nuclei,of |
| R1448 |
T8729 |
T8727 |
pobj |
embryos,in |
| R1449 |
T8730 |
T8728 |
punct |
−,Chaf1a |
| R1450 |
T8731 |
T8728 |
punct |
/,Chaf1a |
| R1451 |
T8578 |
T8579 |
punct |
(,1D |
| R1452 |
T8732 |
T8728 |
punct |
−,Chaf1a |
| R1453 |
T8733 |
T8721 |
punct |
", ",derived |
| R1454 |
T8734 |
T8735 |
amod |
such,cells |
| R1455 |
T8735 |
T8721 |
nsubjpass |
cells,derived |
| R1456 |
T8736 |
T8721 |
aux |
could,derived |
| R1457 |
T8737 |
T8721 |
neg |
not,derived |
| R1458 |
T8738 |
T8721 |
auxpass |
be,derived |
| R1459 |
T8579 |
T8554 |
parataxis |
1D,was |
| R1460 |
T8739 |
T8721 |
advmod |
directly,derived |
| R1461 |
T8740 |
T8721 |
prep |
from,derived |
| R1462 |
T8741 |
T8742 |
amod |
null,embryos |
| R1463 |
T8580 |
T8579 |
compound |
Figure,1D |
| R1464 |
T8742 |
T8740 |
pobj |
embryos,from |
| R1465 |
T8743 |
T8721 |
punct |
", ",derived |
| R1466 |
T8744 |
T8721 |
cc |
and,derived |
| R1467 |
T8581 |
T8579 |
punct |
),1D |
| R1468 |
T8745 |
T8746 |
nsubj |
we,used |
| R1469 |
T8746 |
T8721 |
conj |
used,derived |
| R1470 |
T8747 |
T8746 |
advmod |
thus,used |
| R1471 |
T8748 |
T8749 |
det |
an,strategy |
| R1472 |
T8582 |
T8554 |
punct |
.,was |
| R1473 |
T8584 |
T8585 |
nsubj |
Localization,showed |
| R1474 |
T8586 |
T8584 |
prep |
of,Localization |
| R1475 |
T8749 |
T8746 |
dobj |
strategy,used |
| R1476 |
T8750 |
T8749 |
compound |
RNAi,strategy |
| R1477 |
T8751 |
T8752 |
punct |
(,2A |
| R1478 |
T8587 |
T8586 |
pobj |
HP1α,of |
| R1479 |
T8752 |
T8746 |
parataxis |
2A,used |
| R1480 |
T8753 |
T8752 |
compound |
Figure,2A |
| R1481 |
T8754 |
T8752 |
punct |
),2A |
| R1482 |
T8755 |
T8721 |
punct |
.,derived |
| R1483 |
T8588 |
T8589 |
det |
a,pattern |
| R1484 |
T8757 |
T8758 |
nmod |
p150CAF,knockdown |
| R1485 |
T8758 |
T8761 |
nsubjpass |
knockdown,quantified |
| R1486 |
T8589 |
T8585 |
dobj |
pattern,showed |
| R1487 |
T8759 |
T8757 |
punct |
-,p150CAF |
| R1488 |
T8760 |
T8757 |
nummod |
1,p150CAF |
| R1489 |
T8590 |
T8589 |
amod |
diffuse,pattern |
| R1490 |
T8762 |
T8758 |
prep |
in,knockdown |
| R1491 |
T8763 |
T8764 |
compound |
ES,cells |
| R1492 |
T8764 |
T8762 |
pobj |
cells,in |
| R1493 |
T8591 |
T8589 |
amod |
similar,pattern |
| R1494 |
T8765 |
T8761 |
auxpass |
was,quantified |
| R1495 |
T8766 |
T8761 |
prep |
by,quantified |
| R1496 |
T8592 |
T8591 |
prep |
to,similar |
| R1497 |
T8767 |
T8768 |
compound |
Western,blot |
| R1498 |
T8768 |
T8769 |
compound |
blot,analysis |
| R1499 |
T8769 |
T8766 |
pobj |
analysis,by |
| R1500 |
T8593 |
T8594 |
det |
the,DAPI |
| R1501 |
T8594 |
T8592 |
pobj |
DAPI,to |
| R1502 |
T8770 |
T8769 |
cc |
and,analysis |
| R1503 |
T8595 |
T8589 |
punct |
", ",pattern |
| R1504 |
T8771 |
T8769 |
conj |
IF,analysis |
| R1505 |
T8772 |
T8761 |
punct |
.,quantified |
| R1506 |
T8774 |
T8775 |
punct |
(,S1 |
| R1507 |
T8776 |
T8775 |
compound |
Figure,S1 |
| R1508 |
T8777 |
T8775 |
punct |
),S1 |
| R1509 |
T8596 |
T8589 |
prep |
with,pattern |
| R1510 |
T8778 |
T8775 |
punct |
.,S1 |
| R1511 |
T8780 |
T8781 |
nmod |
p150CAF,cells |
| R1512 |
T8597 |
T8598 |
det |
some,enrichment |
| R1513 |
T8781 |
T8788 |
nsubj |
cells,displayed |
| R1514 |
T8782 |
T8780 |
punct |
-,p150CAF |
| R1515 |
T8598 |
T8596 |
pobj |
enrichment,with |
| R1516 |
T8783 |
T8780 |
nummod |
1,p150CAF |
| R1517 |
T8784 |
T8785 |
npadvmod |
RNAi,depleted |
| R1518 |
T8785 |
T8781 |
amod |
depleted,cells |
| R1519 |
T8599 |
T8598 |
prep |
at,enrichment |
| R1520 |
T8786 |
T8785 |
punct |
-,depleted |
| R1521 |
T8787 |
T8781 |
compound |
ES,cells |
| R1522 |
T8600 |
T8601 |
det |
the,periphery |
| R1523 |
T8789 |
T8790 |
det |
a,phenotype |
| R1524 |
T8790 |
T8788 |
dobj |
phenotype,displayed |
| R1525 |
T8791 |
T8792 |
advmod |
very,similar |
| R1526 |
T8792 |
T8790 |
amod |
similar,phenotype |
| R1527 |
T8601 |
T8599 |
pobj |
periphery,at |
| R1528 |
T8793 |
T8792 |
prep |
to,similar |
| R1529 |
T8794 |
T8795 |
det |
the,cells |
| R1530 |
T8795 |
T8793 |
pobj |
cells,to |
| R1531 |
T8602 |
T8601 |
amod |
nuclear,periphery |
| R1532 |
T8796 |
T8795 |
prep |
of,cells |
| R1533 |
T8797 |
T8798 |
nmod |
Chaf1a,mice |
| R1534 |
T8798 |
T8796 |
pobj |
mice,of |
| R1535 |
T8799 |
T8797 |
punct |
−,Chaf1a |
| R1536 |
T8603 |
T8599 |
punct |
", ",at |
| R1537 |
T8800 |
T8797 |
punct |
/,Chaf1a |
| R1538 |
T8801 |
T8797 |
punct |
−,Chaf1a |
| R1539 |
T8802 |
T8798 |
compound |
E4,mice |
| R1540 |
T8604 |
T8599 |
cc |
and,at |
| R1541 |
T8803 |
T8788 |
punct |
.,displayed |
| R1542 |
T8805 |
T8806 |
npadvmod |
DAPI,dense |
| R1543 |
T8605 |
T8599 |
conj |
around,at |
| R1544 |
T8806 |
T8808 |
amod |
dense,foci |
| R1545 |
T8807 |
T8806 |
punct |
-,dense |
| R1546 |
T8808 |
T8809 |
nsubjpass |
foci,lost |
| R1547 |
T8606 |
T8607 |
det |
the,nucleoli |
| R1548 |
T8810 |
T8809 |
auxpass |
were,lost |
| R1549 |
T8811 |
T8809 |
punct |
", ",lost |
| R1550 |
T8812 |
T8809 |
cc |
and,lost |
| R1551 |
T8607 |
T8605 |
pobj |
nucleoli,around |
| R1552 |
T8813 |
T8814 |
nsubj |
we,observed |
| R1553 |
T8814 |
T8809 |
conj |
observed,lost |
| R1554 |
T8815 |
T8816 |
amod |
diffuse,staining |
| R1555 |
T8608 |
T8609 |
punct |
(,1D |
| R1556 |
T8816 |
T8814 |
dobj |
staining,observed |
| R1557 |
T8817 |
T8816 |
nmod |
HP1α,staining |
| R1558 |
T8818 |
T8817 |
cc |
and,HP1α |
| R1559 |
T8819 |
T8817 |
conj |
DAPI,HP1α |
| R1560 |
T8820 |
T8814 |
prep |
around,observed |
| R1561 |
T8821 |
T8822 |
det |
the,nucleoli |
| R1562 |
T8822 |
T8820 |
pobj |
nucleoli,around |
| R1563 |
T8609 |
T8585 |
parataxis |
1D,showed |
| R1564 |
T8823 |
T8820 |
cc |
and,around |
| R1565 |
T8824 |
T8820 |
conj |
at,around |
| R1566 |
T8610 |
T8609 |
compound |
Figure,1D |
| R1567 |
T8825 |
T8826 |
det |
the,periphery |
| R1568 |
T8826 |
T8824 |
pobj |
periphery,at |
| R1569 |
T8827 |
T8826 |
prep |
of,periphery |
| R1570 |
T8828 |
T8829 |
det |
the,nucleus |
| R1571 |
T8829 |
T8827 |
pobj |
nucleus,of |
| R1572 |
T8611 |
T8609 |
punct |
),1D |
| R1573 |
T8830 |
T8831 |
punct |
(,2B |
| R1574 |
T8831 |
T8814 |
parataxis |
2B,observed |
| R1575 |
T8832 |
T8831 |
compound |
Figure,2B |
| R1576 |
T8612 |
T8585 |
punct |
.,showed |
| R1577 |
T8833 |
T8831 |
punct |
),2B |
| R1578 |
T8834 |
T8814 |
punct |
.,observed |
| R1579 |
T8614 |
T8615 |
det |
This,organization |
| R1580 |
T8836 |
T8837 |
det |
This,result |
| R1581 |
T8837 |
T8838 |
nsubj |
result,indicates |
| R1582 |
T8839 |
T8840 |
mark |
that,is |
| R1583 |
T8615 |
T8617 |
nsubj |
organization,is |
| R1584 |
T8840 |
T8838 |
ccomp |
is,indicates |
| R1585 |
T8841 |
T8840 |
nsubj |
p150CAF,is |
| R1586 |
T8842 |
T8841 |
punct |
-,p150CAF |
| R1587 |
T8616 |
T8615 |
amod |
abnormal,organization |
| R1588 |
T8843 |
T8841 |
nummod |
1,p150CAF |
| R1589 |
T8844 |
T8840 |
acomp |
essential,is |
| R1590 |
T8845 |
T8844 |
prep |
for,essential |
| R1591 |
T8618 |
T8615 |
prep |
of,organization |
| R1592 |
T8846 |
T8847 |
amod |
nuclear,organization |
| R1593 |
T8847 |
T8845 |
pobj |
organization,for |
| R1594 |
T8848 |
T8847 |
prep |
of,organization |
| R1595 |
T8849 |
T8848 |
pobj |
heterochromatin,of |
| R1596 |
T8619 |
T8618 |
pobj |
heterochromatin,of |
| R1597 |
T8850 |
T8849 |
prep |
in,heterochromatin |
| R1598 |
T8851 |
T8852 |
compound |
ES,cells |
| R1599 |
T8852 |
T8850 |
pobj |
cells,in |
| R1600 |
T8620 |
T8615 |
prep |
in,organization |
| R1601 |
T8853 |
T8847 |
prep |
in,organization |
| R1602 |
T8621 |
T8622 |
nmod |
Chaf1a,embryos |
| R1603 |
T8622 |
T8620 |
pobj |
embryos,in |
| R1604 |
T8854 |
T8855 |
det |
a,way |
| R1605 |
T8623 |
T8621 |
punct |
−,Chaf1a |
| R1606 |
T8855 |
T8853 |
pobj |
way,in |
| R1607 |
T8856 |
T8855 |
amod |
similar,way |
| R1608 |
T8857 |
T8855 |
prep |
to,way |
| R1609 |
T8624 |
T8621 |
punct |
/,Chaf1a |
| R1610 |
T8858 |
T8859 |
amod |
early,embryos |
| R1611 |
T8859 |
T8857 |
pobj |
embryos,to |
| R1612 |
T8860 |
T8859 |
amod |
pre-implantation,embryos |
| R1613 |
T8861 |
T8838 |
punct |
.,indicates |
| R1614 |
T8625 |
T8621 |
punct |
−,Chaf1a |
| R1615 |
T8863 |
T8864 |
advmod |
Surprisingly,observe |
| R1616 |
T8626 |
T8617 |
acomp |
reminiscent,is |
| R1617 |
T8865 |
T8864 |
punct |
", ",observe |
| R1618 |
T8866 |
T8864 |
nsubj |
we,observe |
| R1619 |
T8867 |
T8864 |
aux |
did,observe |
| R1620 |
T8868 |
T8864 |
neg |
not,observe |
| R1621 |
T8627 |
T8626 |
prep |
of,reminiscent |
| R1622 |
T8869 |
T8870 |
det |
this,alteration |
| R1623 |
T8628 |
T8629 |
det |
the,organization |
| R1624 |
T8870 |
T8864 |
dobj |
alteration,observe |
| R1625 |
T8871 |
T8870 |
amod |
severe,alteration |
| R1626 |
T8872 |
T8870 |
prep |
in,alteration |
| R1627 |
T8873 |
T8874 |
compound |
heterochromatin,organization |
| R1628 |
T8629 |
T8627 |
pobj |
organization,of |
| R1629 |
T8874 |
T8872 |
pobj |
organization,in |
| R1630 |
T8875 |
T8864 |
prep |
in,observe |
| R1631 |
T8876 |
T8877 |
amod |
primary,fibroblasts |
| R1632 |
T8630 |
T8629 |
compound |
heterochromatin,organization |
| R1633 |
T8877 |
T8875 |
pobj |
fibroblasts,in |
| R1634 |
T8878 |
T8877 |
nmod |
mouse,fibroblasts |
| R1635 |
T8879 |
T8877 |
amod |
embryonic,fibroblasts |
| R1636 |
T8880 |
T8877 |
punct |
(,fibroblasts |
| R1637 |
T8631 |
T8629 |
acl |
found,organization |
| R1638 |
T8881 |
T8877 |
appos |
MEFs,fibroblasts |
| R1639 |
T8882 |
T8864 |
punct |
),observe |
| R1640 |
T8883 |
T8864 |
prep |
following,observe |
| R1641 |
T8632 |
T8631 |
prep |
in,found |
| R1642 |
T8884 |
T8885 |
nmod |
p150CAF,depletion |
| R1643 |
T8885 |
T8883 |
pobj |
depletion,following |
| R1644 |
T8886 |
T8884 |
punct |
-,p150CAF |
| R1645 |
T8633 |
T8634 |
quantmod |
two,four |
| R1646 |
T8887 |
T8884 |
nummod |
1,p150CAF |
| R1647 |
T8888 |
T8885 |
prep |
by,depletion |
| R1648 |
T8889 |
T8888 |
pobj |
RNAi,by |
| R1649 |
T8634 |
T8637 |
nummod |
four,cell |
| R1650 |
T8890 |
T8864 |
punct |
.,observe |
| R1651 |
T8892 |
T8893 |
nmod |
p150CAF,depletion |
| R1652 |
T8635 |
T8634 |
punct |
-,four |
| R1653 |
T8893 |
T8896 |
nsubj |
depletion,resulted |
| R1654 |
T8894 |
T8892 |
punct |
-,p150CAF |
| R1655 |
T8895 |
T8892 |
nummod |
1,p150CAF |
| R1656 |
T8636 |
T8634 |
quantmod |
to,four |
| R1657 |
T8897 |
T8893 |
prep |
in,depletion |
| R1658 |
T8898 |
T8897 |
pobj |
MEFs,in |
| R1659 |
T8637 |
T8639 |
nmod |
cell,stage |
| R1660 |
T8899 |
T8896 |
prep |
in,resulted |
| R1661 |
T8900 |
T8901 |
det |
a,inhibition |
| R1662 |
T8901 |
T8899 |
pobj |
inhibition,in |
| R1663 |
T8902 |
T8901 |
amod |
strong,inhibition |
| R1664 |
T8903 |
T8901 |
prep |
of,inhibition |
| R1665 |
T8904 |
T8905 |
compound |
cell,proliferation |
| R1666 |
T8905 |
T8903 |
pobj |
proliferation,of |
| R1667 |
T8638 |
T8637 |
punct |
-,cell |
| R1668 |
T8906 |
T8907 |
punct |
(,data |
| R1669 |
T8907 |
T8896 |
meta |
data,resulted |
| R1670 |
T8908 |
T8907 |
amod |
unpublished,data |
| R1671 |
T8909 |
T8907 |
punct |
),data |
| R1672 |
T8639 |
T8640 |
nmod |
stage,embryos |
| R1673 |
T8910 |
T8896 |
punct |
", ",resulted |
| R1674 |
T8911 |
T8896 |
cc |
but,resulted |
| R1675 |
T8912 |
T8913 |
aux |
did,alter |
| R1676 |
T8913 |
T8896 |
conj |
alter,resulted |
| R1677 |
T8640 |
T8632 |
pobj |
embryos,in |
| R1678 |
T8914 |
T8913 |
neg |
not,alter |
| R1679 |
T8915 |
T8916 |
det |
the,clustering |
| R1680 |
T8916 |
T8913 |
dobj |
clustering,alter |
| R1681 |
T8641 |
T8642 |
amod |
wild,type |
| R1682 |
T8917 |
T8916 |
prep |
of,clustering |
| R1683 |
T8918 |
T8919 |
compound |
heterochromatin,domains |
| R1684 |
T8919 |
T8917 |
pobj |
domains,of |
| R1685 |
T8642 |
T8640 |
compound |
type,embryos |
| R1686 |
T8920 |
T8921 |
punct |
(,2C |
| R1687 |
T8921 |
T8913 |
parataxis |
2C,alter |
| R1688 |
T8922 |
T8921 |
compound |
Figures,2C |
| R1689 |
T8959 |
T8957 |
pobj |
embryo,in |
| R1690 |
T8923 |
T8921 |
cc |
and,2C |
| R1691 |
T8924 |
T8921 |
conj |
S2,2C |
| R1692 |
T8925 |
T8921 |
punct |
),2C |
| R1693 |
T8926 |
T8896 |
punct |
.,resulted |
| R1694 |
T8928 |
T8929 |
advmod |
Similarly,affect |
| R1695 |
T8960 |
T8959 |
amod |
early,embryo |
| R1696 |
T8930 |
T8929 |
punct |
", ",affect |
| R1697 |
T8931 |
T8932 |
nmod |
p150CAF,depletion |
| R1698 |
T8961 |
T8959 |
cc |
and,embryo |
| R1699 |
T8932 |
T8929 |
nsubj |
depletion,affect |
| R1700 |
T8933 |
T8931 |
punct |
-,p150CAF |
| R1701 |
T8962 |
T8963 |
compound |
ES,cells |
| R1702 |
T8934 |
T8931 |
nummod |
1,p150CAF |
| R1703 |
T8935 |
T8932 |
prep |
in,depletion |
| R1704 |
T8936 |
T8937 |
compound |
3T3,cells |
| R1705 |
T8937 |
T8935 |
pobj |
cells,in |
| R1706 |
T8963 |
T8959 |
conj |
cells,embryo |
| R1707 |
T8938 |
T8929 |
aux |
did,affect |
| R1708 |
T8939 |
T8929 |
neg |
not,affect |
| R1709 |
T8940 |
T8941 |
compound |
heterochromatin,organization |
| R1710 |
T8964 |
T8949 |
punct |
.,reveal |
| R1711 |
T8941 |
T8929 |
dobj |
organization,affect |
| R1712 |
T8942 |
T8943 |
punct |
[,16 |
| R1713 |
T8943 |
T8929 |
parataxis |
16,affect |
| R1714 |
T8944 |
T8943 |
punct |
],16 |
| R1715 |
T8945 |
T8929 |
punct |
.,affect |
| R1716 |
T8966 |
T8967 |
nsubj |
We,wondered |
| R1717 |
T8947 |
T8948 |
det |
These,observations |
| R1718 |
T8948 |
T8949 |
nsubj |
observations,reveal |
| R1719 |
T8950 |
T8951 |
det |
a,function |
| R1720 |
T8968 |
T8967 |
advmod |
also,wondered |
| R1721 |
T8951 |
T8949 |
dobj |
function,reveal |
| R1722 |
T8952 |
T8951 |
amod |
specific,function |
| R1723 |
T8953 |
T8951 |
prep |
for,function |
| R1724 |
T8954 |
T8953 |
pobj |
CAF,for |
| R1725 |
T8955 |
T8954 |
punct |
-,CAF |
| R1726 |
T8956 |
T8954 |
nummod |
1,CAF |
| R1727 |
T8969 |
T8970 |
mark |
whether,affects |
| R1728 |
T8957 |
T8951 |
prep |
in,function |
| R1729 |
T8958 |
T8959 |
det |
the,embryo |
| R1730 |
T8970 |
T8967 |
advcl |
affects,wondered |
| R1731 |
T8971 |
T8970 |
nsubj |
loss,affects |
| R1732 |
T8972 |
T8971 |
prep |
of,loss |
| R1733 |
T8973 |
T8972 |
pobj |
p150CAF,of |
| R1734 |
T9065 |
T9064 |
compound |
Figure,2D |
| R1735 |
T8974 |
T8973 |
punct |
-,p150CAF |
| R1736 |
T9066 |
T9064 |
punct |
),2D |
| R1737 |
T9067 |
T9038 |
punct |
.,detect |
| R1738 |
T8975 |
T8973 |
nummod |
1,p150CAF |
| R1739 |
T9069 |
T9070 |
det |
These,data |
| R1740 |
T9070 |
T9071 |
nsubj |
data,show |
| R1741 |
T8976 |
T8971 |
prep |
in,loss |
| R1742 |
T9072 |
T9073 |
mark |
that,altered |
| R1743 |
T9073 |
T9071 |
ccomp |
altered,show |
| R1744 |
T8977 |
T8978 |
compound |
ES,cells |
| R1745 |
T9074 |
T9075 |
amod |
nuclear,architecture |
| R1746 |
T9075 |
T9073 |
nsubjpass |
architecture,altered |
| R1747 |
T9076 |
T9073 |
auxpass |
is,altered |
| R1748 |
T8978 |
T8976 |
pobj |
cells,in |
| R1749 |
T9077 |
T9073 |
neg |
not,altered |
| R1750 |
T9078 |
T9073 |
advmod |
globally,altered |
| R1751 |
T8979 |
T8970 |
advmod |
specifically,affects |
| R1752 |
T9079 |
T9073 |
prep |
following,altered |
| R1753 |
T9080 |
T9079 |
pobj |
CAF,following |
| R1754 |
T9081 |
T9080 |
punct |
-,CAF |
| R1755 |
T8980 |
T8981 |
det |
the,subcompartment |
| R1756 |
T9082 |
T9080 |
nummod |
1,CAF |
| R1757 |
T9083 |
T9080 |
appos |
loss,CAF |
| R1758 |
T9084 |
T9083 |
punct |
-,loss |
| R1759 |
T8981 |
T8970 |
dobj |
subcompartment,affects |
| R1760 |
T9085 |
T9083 |
prep |
of,loss |
| R1761 |
T9086 |
T9085 |
punct |
-,of |
| R1762 |
T9087 |
T9085 |
pobj |
function,of |
| R1763 |
T8982 |
T8981 |
nmod |
heterochromatin,subcompartment |
| R1764 |
T9088 |
T9071 |
punct |
.,show |
| R1765 |
T9090 |
T9091 |
prep |
In,revealed |
| R1766 |
T9092 |
T9090 |
pobj |
addition,In |
| R1767 |
T9093 |
T9091 |
punct |
", ",revealed |
| R1768 |
T9094 |
T9095 |
compound |
Western,blot |
| R1769 |
T8983 |
T8981 |
amod |
nuclear,subcompartment |
| R1770 |
T9095 |
T9096 |
compound |
blot,analysis |
| R1771 |
T9096 |
T9091 |
nsubj |
analysis,revealed |
| R1772 |
T9097 |
T9098 |
mark |
that,result |
| R1773 |
T8984 |
T8970 |
punct |
", ",affects |
| R1774 |
T9098 |
T9091 |
ccomp |
result,revealed |
| R1775 |
T9099 |
T9100 |
nmod |
CAF,depletion |
| R1776 |
T9100 |
T9098 |
nsubj |
depletion,result |
| R1777 |
T8985 |
T8970 |
cc |
or,affects |
| R1778 |
T9101 |
T9099 |
punct |
-,CAF |
| R1779 |
T9102 |
T9099 |
nummod |
1,CAF |
| R1780 |
T9103 |
T9098 |
aux |
did,result |
| R1781 |
T8986 |
T8987 |
mark |
whether,result |
| R1782 |
T9104 |
T9098 |
neg |
not,result |
| R1783 |
T9105 |
T9098 |
prep |
in,result |
| R1784 |
T9106 |
T9107 |
amod |
altered,levels |
| R1785 |
T8987 |
T8970 |
conj |
result,affects |
| R1786 |
T9107 |
T9105 |
pobj |
levels,in |
| R1787 |
T9108 |
T9107 |
prep |
of,levels |
| R1788 |
T9109 |
T9110 |
nmod |
chromatin,proteins |
| R1789 |
T8988 |
T8987 |
nsubj |
it,result |
| R1790 |
T9110 |
T9108 |
pobj |
proteins,of |
| R1791 |
T9111 |
T9110 |
amod |
architectural,proteins |
| R1792 |
T9112 |
T9113 |
amod |
such,as |
| R1793 |
T9113 |
T9110 |
prep |
as,proteins |
| R1794 |
T8989 |
T8987 |
aux |
might,result |
| R1795 |
T9114 |
T9115 |
compound |
histone,H3 |
| R1796 |
T9115 |
T9113 |
pobj |
H3,as |
| R1797 |
T9116 |
T9115 |
cc |
and,H3 |
| R1798 |
T8990 |
T8987 |
prep |
in,result |
| R1799 |
T9117 |
T9115 |
conj |
HP1α,H3 |
| R1800 |
T9118 |
T9119 |
punct |
(,S1 |
| R1801 |
T8991 |
T8992 |
det |
a,loss |
| R1802 |
T9119 |
T9091 |
parataxis |
S1,revealed |
| R1803 |
T8992 |
T8990 |
pobj |
loss,in |
| R1804 |
T9120 |
T9119 |
compound |
Figure,S1 |
| R1805 |
T9121 |
T9119 |
punct |
),S1 |
| R1806 |
T9122 |
T9091 |
punct |
.,revealed |
| R1807 |
T8993 |
T8994 |
advmod |
more,global |
| R1808 |
T9124 |
T9125 |
advmod |
Thus,required |
| R1809 |
T8994 |
T8992 |
amod |
global,loss |
| R1810 |
T9126 |
T9125 |
punct |
", ",required |
| R1811 |
T9127 |
T9125 |
nsubjpass |
CAF,required |
| R1812 |
T8995 |
T8992 |
prep |
of,loss |
| R1813 |
T9128 |
T9127 |
punct |
-,CAF |
| R1814 |
T9129 |
T9127 |
nummod |
1,CAF |
| R1815 |
T9130 |
T9125 |
auxpass |
is,required |
| R1816 |
T8996 |
T8997 |
amod |
nuclear,organization |
| R1817 |
T9131 |
T9125 |
advmod |
specifically,required |
| R1818 |
T9132 |
T9125 |
prep |
in,required |
| R1819 |
T9133 |
T9134 |
amod |
early,embryos |
| R1820 |
T9134 |
T9132 |
pobj |
embryos,in |
| R1821 |
T9135 |
T9132 |
cc |
and,in |
| R1822 |
T9136 |
T9132 |
conj |
in,in |
| R1823 |
T8997 |
T8995 |
pobj |
organization,of |
| R1824 |
T9137 |
T9138 |
compound |
ES,cells |
| R1825 |
T9138 |
T9136 |
pobj |
cells,in |
| R1826 |
T9139 |
T9125 |
prep |
for,required |
| R1827 |
T8998 |
T8997 |
cc |
and,organization |
| R1828 |
T9140 |
T9141 |
det |
the,organization |
| R1829 |
T9141 |
T9139 |
pobj |
organization,for |
| R1830 |
T9142 |
T9141 |
amod |
proper,organization |
| R1831 |
T8999 |
T8997 |
conj |
architecture,organization |
| R1832 |
T9143 |
T9141 |
prep |
of,organization |
| R1833 |
T9144 |
T9145 |
det |
the,compartment |
| R1834 |
T9145 |
T9143 |
pobj |
compartment,of |
| R1835 |
T9000 |
T8967 |
punct |
.,wondered |
| R1836 |
T9146 |
T9145 |
nmod |
heterochromatin,compartment |
| R1837 |
T9147 |
T9145 |
amod |
subnuclear,compartment |
| R1838 |
T9148 |
T9125 |
punct |
.,required |
| R1839 |
T9002 |
T9003 |
nsubj |
We,used |
| R1840 |
T9150 |
T9151 |
amod |
Previous,studies |
| R1841 |
T9151 |
T9152 |
nsubj |
studies,showed |
| R1842 |
T9004 |
T9005 |
det |
a,antibody |
| R1843 |
T9153 |
T9151 |
acl |
performed,studies |
| R1844 |
T9154 |
T9153 |
prep |
in,performed |
| R1845 |
T9155 |
T9156 |
amod |
mammalian,lines |
| R1846 |
T9156 |
T9154 |
pobj |
lines,in |
| R1847 |
T9157 |
T9156 |
compound |
cell,lines |
| R1848 |
T9005 |
T9003 |
dobj |
antibody,used |
| R1849 |
T9158 |
T9159 |
mark |
that,required |
| R1850 |
T9159 |
T9152 |
ccomp |
required,showed |
| R1851 |
T9160 |
T9161 |
nmod |
CAF,activity |
| R1852 |
T9161 |
T9159 |
nsubjpass |
activity,required |
| R1853 |
T9006 |
T9005 |
amod |
specific,antibody |
| R1854 |
T9162 |
T9160 |
punct |
-,CAF |
| R1855 |
T9163 |
T9160 |
nummod |
1,CAF |
| R1856 |
T9164 |
T9159 |
auxpass |
is,required |
| R1857 |
T9007 |
T9005 |
prep |
against,antibody |
| R1858 |
T9165 |
T9159 |
prep |
for,required |
| R1859 |
T9166 |
T9167 |
compound |
S,phase |
| R1860 |
T9008 |
T9009 |
det |
the,protein |
| R1861 |
T9167 |
T9168 |
compound |
phase,progression |
| R1862 |
T9168 |
T9165 |
pobj |
progression,for |
| R1863 |
T9169 |
T9170 |
punct |
[,24 |
| R1864 |
T9009 |
T9007 |
pobj |
protein,against |
| R1865 |
T9170 |
T9152 |
parataxis |
24,showed |
| R1866 |
T9010 |
T9011 |
amod |
promyelocytic,leukemia |
| R1867 |
T9011 |
T9009 |
nmod |
leukemia,protein |
| R1868 |
T9171 |
T9170 |
nummod |
16,24 |
| R1869 |
T9172 |
T9170 |
punct |
",",24 |
| R1870 |
T9173 |
T9170 |
nummod |
23,24 |
| R1871 |
T9174 |
T9170 |
punct |
",",24 |
| R1872 |
T9175 |
T9170 |
punct |
],24 |
| R1873 |
T9012 |
T9011 |
punct |
(,leukemia |
| R1874 |
T9176 |
T9152 |
punct |
.,showed |
| R1875 |
T9178 |
T9179 |
nsubj |
We,show |
| R1876 |
T9013 |
T9011 |
appos |
PML,leukemia |
| R1877 |
T9180 |
T9179 |
advmod |
here,show |
| R1878 |
T9181 |
T9182 |
mark |
that,appear |
| R1879 |
T9014 |
T9009 |
punct |
),protein |
| R1880 |
T9015 |
T9016 |
aux |
to,study |
| R1881 |
T9182 |
T9179 |
ccomp |
appear,show |
| R1882 |
T9183 |
T9184 |
nummod |
3,d |
| R1883 |
T9184 |
T9185 |
npadvmod |
d,after |
| R1884 |
T9016 |
T9003 |
advcl |
study,used |
| R1885 |
T9185 |
T9182 |
prep |
after,appear |
| R1886 |
T9186 |
T9185 |
pobj |
transfection,after |
| R1887 |
T9017 |
T9018 |
det |
the,fate |
| R1888 |
T9187 |
T9186 |
prep |
of,transfection |
| R1889 |
T9188 |
T9189 |
det |
the,vector |
| R1890 |
T9189 |
T9187 |
pobj |
vector,of |
| R1891 |
T9018 |
T9016 |
dobj |
fate,study |
| R1892 |
T9190 |
T9189 |
compound |
RNAi,vector |
| R1893 |
T9191 |
T9182 |
punct |
", ",appear |
| R1894 |
T9192 |
T9193 |
npadvmod |
p150CAF,depleted |
| R1895 |
T9019 |
T9018 |
prep |
of,fate |
| R1896 |
T9193 |
T9197 |
amod |
depleted,cells |
| R1897 |
T9194 |
T9192 |
punct |
-,p150CAF |
| R1898 |
T9195 |
T9192 |
nummod |
1,p150CAF |
| R1899 |
T9020 |
T9021 |
det |
the,bodies |
| R1900 |
T9196 |
T9193 |
punct |
-,depleted |
| R1901 |
T9197 |
T9182 |
nsubj |
cells,appear |
| R1902 |
T9198 |
T9197 |
punct |
(,cells |
| R1903 |
T9021 |
T9019 |
pobj |
bodies,of |
| R1904 |
T9199 |
T9197 |
acl |
identified,cells |
| R1905 |
T9200 |
T9199 |
agent |
by,identified |
| R1906 |
T9201 |
T9202 |
det |
a,absence |
| R1907 |
T9022 |
T9021 |
nmod |
PML,bodies |
| R1908 |
T9202 |
T9200 |
pobj |
absence,by |
| R1909 |
T9203 |
T9202 |
amod |
complete,absence |
| R1910 |
T9204 |
T9202 |
prep |
of,absence |
| R1911 |
T9023 |
T9021 |
amod |
nuclear,bodies |
| R1912 |
T9205 |
T9206 |
nmod |
CAF,signal |
| R1913 |
T9206 |
T9204 |
pobj |
signal,of |
| R1914 |
T9207 |
T9205 |
punct |
-,CAF |
| R1915 |
T9024 |
T9021 |
punct |
", ",bodies |
| R1916 |
T9208 |
T9205 |
nummod |
1,CAF |
| R1917 |
T9209 |
T9206 |
compound |
IF,signal |
| R1918 |
T9210 |
T9197 |
punct |
),cells |
| R1919 |
T9025 |
T9026 |
dep |
which,are |
| R1920 |
T9211 |
T9212 |
advmod |
still,active |
| R1921 |
T9212 |
T9182 |
oprd |
active,appear |
| R1922 |
T9213 |
T9212 |
prep |
for,active |
| R1923 |
T9214 |
T9213 |
pobj |
replication,for |
| R1924 |
T9215 |
T9182 |
punct |
", ",appear |
| R1925 |
T9216 |
T9217 |
mark |
as,revealed |
| R1926 |
T9026 |
T9021 |
relcl |
are,bodies |
| R1927 |
T9217 |
T9182 |
advcl |
revealed,appear |
| R1928 |
T9218 |
T9217 |
agent |
by,revealed |
| R1929 |
T9219 |
T9218 |
pobj |
incorporation,by |
| R1930 |
T9027 |
T9028 |
advmod |
well,characterized |
| R1931 |
T9220 |
T9219 |
prep |
of,incorporation |
| R1932 |
T9221 |
T9222 |
det |
the,analog |
| R1933 |
T9028 |
T9030 |
amod |
characterized,structures |
| R1934 |
T9222 |
T9220 |
pobj |
analog,of |
| R1935 |
T9223 |
T9222 |
compound |
thymidine,analog |
| R1936 |
T9224 |
T9222 |
appos |
bromodeoxyuridine,analog |
| R1937 |
T9225 |
T9224 |
punct |
(,bromodeoxyuridine |
| R1938 |
T9029 |
T9028 |
punct |
-,characterized |
| R1939 |
T9226 |
T9224 |
appos |
BrdU,bromodeoxyuridine |
| R1940 |
T9227 |
T9219 |
punct |
),incorporation |
| R1941 |
T9228 |
T9229 |
punct |
(,3A |
| R1942 |
T9030 |
T9026 |
attr |
structures,are |
| R1943 |
T9229 |
T9219 |
parataxis |
3A,incorporation |
| R1944 |
T9230 |
T9229 |
compound |
Figure,3A |
| R1945 |
T9031 |
T9030 |
amod |
subnuclear,structures |
| R1946 |
T9231 |
T9229 |
punct |
),3A |
| R1947 |
T9232 |
T9219 |
punct |
", ",incorporation |
| R1948 |
T9233 |
T9234 |
det |
the,pattern |
| R1949 |
T9032 |
T9033 |
punct |
[,22 |
| R1950 |
T9234 |
T9219 |
conj |
pattern,incorporation |
| R1951 |
T9235 |
T9234 |
nmod |
PCNA,pattern |
| R1952 |
T9236 |
T9235 |
punct |
(,PCNA |
| R1953 |
T9033 |
T9003 |
parataxis |
22,used |
| R1954 |
T9237 |
T9238 |
amod |
proliferating,antigen |
| R1955 |
T9238 |
T9235 |
appos |
antigen,PCNA |
| R1956 |
T9239 |
T9238 |
nmod |
cell,antigen |
| R1957 |
T9034 |
T9033 |
punct |
],22 |
| R1958 |
T9240 |
T9238 |
amod |
nuclear,antigen |
| R1959 |
T9241 |
T9234 |
punct |
),pattern |
| R1960 |
T9242 |
T9243 |
punct |
(,3B |
| R1961 |
T9035 |
T9003 |
punct |
.,used |
| R1962 |
T9243 |
T9234 |
parataxis |
3B,pattern |
| R1963 |
T9244 |
T9243 |
compound |
Figure,3B |
| R1964 |
T9245 |
T9243 |
punct |
),3B |
| R1965 |
T9246 |
T9234 |
punct |
", ",pattern |
| R1966 |
T9037 |
T9038 |
nsubj |
We,detect |
| R1967 |
T9247 |
T9234 |
cc |
and,pattern |
| R1968 |
T9248 |
T9249 |
compound |
flow,analysis |
| R1969 |
T9249 |
T9234 |
conj |
analysis,pattern |
| R1970 |
T9250 |
T9249 |
compound |
cytometry,analysis |
| R1971 |
T9039 |
T9038 |
aux |
could,detect |
| R1972 |
T9251 |
T9252 |
punct |
(,3C |
| R1973 |
T9252 |
T9249 |
parataxis |
3C,analysis |
| R1974 |
T9253 |
T9252 |
compound |
Figure,3C |
| R1975 |
T9254 |
T9252 |
punct |
),3C |
| R1976 |
T9255 |
T9179 |
punct |
.,show |
| R1977 |
T9257 |
T9258 |
advmod |
Hence,persists |
| R1978 |
T9259 |
T9258 |
punct |
", ",persists |
| R1979 |
T9040 |
T9038 |
neg |
not,detect |
| R1980 |
T9260 |
T9258 |
prep |
in,persists |
| R1981 |
T9261 |
T9262 |
det |
these,cells |
| R1982 |
T9262 |
T9260 |
pobj |
cells,in |
| R1983 |
T9263 |
T9258 |
punct |
", ",persists |
| R1984 |
T9041 |
T9042 |
det |
any,difference |
| R1985 |
T9264 |
T9265 |
compound |
DNA,replication |
| R1986 |
T9265 |
T9258 |
nsubj |
replication,persists |
| R1987 |
T9266 |
T9258 |
prep |
despite,persists |
| R1988 |
T9042 |
T9038 |
dobj |
difference,detect |
| R1989 |
T9267 |
T9268 |
det |
the,changes |
| R1990 |
T9268 |
T9266 |
pobj |
changes,despite |
| R1991 |
T9269 |
T9268 |
amod |
drastic,changes |
| R1992 |
T9043 |
T9042 |
amod |
significant,difference |
| R1993 |
T9270 |
T9268 |
prep |
in,changes |
| R1994 |
T9271 |
T9272 |
compound |
heterochromatin,organization |
| R1995 |
T9272 |
T9270 |
pobj |
organization,in |
| R1996 |
T9044 |
T9042 |
prep |
in,difference |
| R1997 |
T9273 |
T9258 |
punct |
.,persists |
| R1998 |
T9275 |
T9276 |
advmod |
However,cease |
| R1999 |
T9045 |
T9046 |
det |
the,distribution |
| R2000 |
T9046 |
T9044 |
pobj |
distribution,in |
| R2001 |
T9047 |
T9046 |
cc |
and,distribution |
| R2002 |
T9277 |
T9276 |
punct |
", ",cease |
| R2003 |
T9048 |
T9046 |
conj |
aspect,distribution |
| R2004 |
T9278 |
T9279 |
nummod |
24,h |
| R2005 |
T9279 |
T9280 |
npadvmod |
h,later |
| R2006 |
T9280 |
T9276 |
advmod |
later,cease |
| R2007 |
T9049 |
T9046 |
prep |
of,distribution |
| R2008 |
T9281 |
T9276 |
punct |
", ",cease |
| R2009 |
T9282 |
T9283 |
compound |
ES,cells |
| R2010 |
T9283 |
T9276 |
nsubj |
cells,cease |
| R2011 |
T9284 |
T9285 |
aux |
to,proliferate |
| R2012 |
T9050 |
T9051 |
nmod |
PML,bodies |
| R2013 |
T9285 |
T9276 |
xcomp |
proliferate,cease |
| R2014 |
T9286 |
T9276 |
cc |
and,cease |
| R2015 |
T9051 |
T9049 |
pobj |
bodies,of |
| R2016 |
T9287 |
T9276 |
conj |
die,cease |
| R2017 |
T9288 |
T9276 |
punct |
", ",cease |
| R2018 |
T9289 |
T9276 |
advcl |
revealing,cease |
| R2019 |
T9290 |
T9291 |
mark |
that,required |
| R2020 |
T9052 |
T9051 |
amod |
nuclear,bodies |
| R2021 |
T9053 |
T9051 |
prep |
between,bodies |
| R2022 |
T9291 |
T9289 |
ccomp |
required,revealing |
| R2023 |
T9292 |
T9291 |
nsubjpass |
p150CAF,required |
| R2024 |
T9054 |
T9055 |
nmod |
control,cells |
| R2025 |
T9293 |
T9292 |
punct |
-,p150CAF |
| R2026 |
T9294 |
T9292 |
nummod |
1,p150CAF |
| R2027 |
T9295 |
T9291 |
auxpass |
is,required |
| R2028 |
T9296 |
T9291 |
prep |
for,required |
| R2029 |
T9297 |
T9298 |
det |
an,process |
| R2030 |
T9298 |
T9296 |
pobj |
process,for |
| R2031 |
T9299 |
T9298 |
amod |
essential,process |
| R2032 |
T9055 |
T9053 |
pobj |
cells,between |
| R2033 |
T9300 |
T9298 |
amod |
cellular,process |
| R2034 |
T9301 |
T9291 |
punct |
", ",required |
| R2035 |
T9302 |
T9291 |
prep |
as,required |
| R2036 |
T9056 |
T9054 |
cc |
and,control |
| R2037 |
T9303 |
T9302 |
prep |
in,as |
| R2038 |
T9304 |
T9303 |
pobj |
embryos,in |
| R2039 |
T9305 |
T9276 |
punct |
.,cease |
| R2040 |
T9057 |
T9058 |
npadvmod |
p150CAF,depleted |
| R2041 |
T9307 |
T9308 |
advmod |
Altogether,demonstrate |
| R2042 |
T9058 |
T9054 |
conj |
depleted,control |
| R2043 |
T9309 |
T9308 |
punct |
", ",demonstrate |
| R2044 |
T9310 |
T9311 |
poss |
our,data |
| R2045 |
T9059 |
T9057 |
punct |
-,p150CAF |
| R2046 |
T9311 |
T9308 |
nsubj |
data,demonstrate |
| R2047 |
T9312 |
T9313 |
mark |
that,alters |
| R2048 |
T9313 |
T9308 |
ccomp |
alters,demonstrate |
| R2049 |
T9060 |
T9057 |
nummod |
1,p150CAF |
| R2050 |
T9314 |
T9313 |
nsubj |
loss,alters |
| R2051 |
T9315 |
T9314 |
prep |
of,loss |
| R2052 |
T9316 |
T9317 |
nmod |
p150CAF,function |
| R2053 |
T9061 |
T9058 |
punct |
-,depleted |
| R2054 |
T9317 |
T9315 |
pobj |
function,of |
| R2055 |
T9318 |
T9316 |
punct |
-,p150CAF |
| R2056 |
T9319 |
T9316 |
nummod |
1,p150CAF |
| R2057 |
T9062 |
T9055 |
compound |
ES,cells |
| R2058 |
T9320 |
T9314 |
prep |
in,loss |
| R2059 |
T9321 |
T9322 |
compound |
ES,cells |
| R2060 |
T9322 |
T9320 |
pobj |
cells,in |
| R2061 |
T9063 |
T9064 |
punct |
(,2D |
| R2062 |
T9323 |
T9322 |
cc |
and,cells |
| R2063 |
T9324 |
T9325 |
amod |
early,embryos |
| R2064 |
T9325 |
T9322 |
conj |
embryos,cells |
| R2065 |
T9064 |
T9038 |
parataxis |
2D,detect |
| R2066 |
T9326 |
T9313 |
advmod |
first,alters |
| R2067 |
T9327 |
T9328 |
det |
the,organization |
| R2068 |
T9328 |
T9313 |
dobj |
organization,alters |
| R2069 |
T9382 |
T9379 |
amod |
chromosomal,regions |
| R2070 |
T9329 |
T9328 |
prep |
of,organization |
| R2071 |
T9330 |
T9329 |
pobj |
heterochromatin,of |
| R2072 |
T9331 |
T9328 |
prep |
in,organization |
| R2073 |
T9332 |
T9333 |
det |
the,nucleus |
| R2074 |
T9333 |
T9331 |
pobj |
nucleus,in |
| R2075 |
T9334 |
T9313 |
cc |
and,alters |
| R2076 |
T9383 |
T9379 |
punct |
", ",regions |
| R2077 |
T9335 |
T9313 |
punct |
", ",alters |
| R2078 |
T9336 |
T9337 |
prep |
in,cycle |
| R2079 |
T9337 |
T9313 |
conj |
cycle,alters |
| R2080 |
T9338 |
T9339 |
det |
a,step |
| R2081 |
T9339 |
T9336 |
pobj |
step,in |
| R2082 |
T9340 |
T9339 |
amod |
subsequent,step |
| R2083 |
T9341 |
T9337 |
punct |
", ",cycle |
| R2084 |
T9342 |
T9337 |
compound |
cell,cycle |
| R2085 |
T9384 |
T9385 |
dep |
which,composed |
| R2086 |
T9343 |
T9337 |
cc |
and,cycle |
| R2087 |
T9344 |
T9337 |
conj |
viability,cycle |
| R2088 |
T9345 |
T9308 |
punct |
.,demonstrate |
| R2089 |
T9385 |
T9379 |
relcl |
composed,regions |
| R2090 |
T9347 |
T9348 |
prep |
In,performed |
| R2091 |
T9349 |
T9347 |
pobj |
order,In |
| R2092 |
T9350 |
T9351 |
aux |
to,characterize |
| R2093 |
T9386 |
T9385 |
prep |
in,composed |
| R2094 |
T9351 |
T9349 |
acl |
characterize,order |
| R2095 |
T9352 |
T9351 |
advmod |
better,characterize |
| R2096 |
T9353 |
T9354 |
det |
the,defects |
| R2097 |
T9387 |
T9386 |
pobj |
mouse,in |
| R2098 |
T9354 |
T9351 |
dobj |
defects,characterize |
| R2099 |
T9355 |
T9354 |
prep |
in,defects |
| R2100 |
T9388 |
T9385 |
auxpass |
are,composed |
| R2101 |
T9389 |
T9385 |
advmod |
mainly,composed |
| R2102 |
T9356 |
T9357 |
compound |
heterochromatin,organization |
| R2103 |
T9390 |
T9385 |
prep |
of,composed |
| R2104 |
T9357 |
T9355 |
pobj |
organization,in |
| R2105 |
T9358 |
T9348 |
punct |
", ",performed |
| R2106 |
T9359 |
T9348 |
nsubj |
we,performed |
| R2107 |
T9391 |
T9392 |
amod |
large,blocks |
| R2108 |
T9360 |
T9361 |
nummod |
two,color |
| R2109 |
T9361 |
T9363 |
nmod |
color,experiments |
| R2110 |
T9362 |
T9361 |
punct |
-,color |
| R2111 |
T9392 |
T9390 |
pobj |
blocks,of |
| R2112 |
T9363 |
T9348 |
dobj |
experiments,performed |
| R2113 |
T9364 |
T9363 |
nmod |
DNA,experiments |
| R2114 |
T9365 |
T9366 |
nmod |
fluorescence,hybridization |
| R2115 |
T9393 |
T9392 |
prep |
of,blocks |
| R2116 |
T9366 |
T9363 |
nmod |
hybridization,experiments |
| R2117 |
T9367 |
T9368 |
advmod |
in,situ |
| R2118 |
T9368 |
T9366 |
amod |
situ,hybridization |
| R2119 |
T9369 |
T9366 |
punct |
(,hybridization |
| R2120 |
T9394 |
T9395 |
amod |
major,repeats |
| R2121 |
T9370 |
T9366 |
appos |
FISH,hybridization |
| R2122 |
T9371 |
T9363 |
punct |
),experiments |
| R2123 |
T9372 |
T9373 |
aux |
to,reveal |
| R2124 |
T9395 |
T9393 |
pobj |
repeats,of |
| R2125 |
T9373 |
T9348 |
advcl |
reveal,performed |
| R2126 |
T9374 |
T9375 |
det |
the,distribution |
| R2127 |
T9396 |
T9394 |
cc |
and,major |
| R2128 |
T9375 |
T9373 |
dobj |
distribution,reveal |
| R2129 |
T9376 |
T9375 |
amod |
spatial,distribution |
| R2130 |
T9377 |
T9375 |
prep |
of,distribution |
| R2131 |
T9378 |
T9379 |
amod |
pericentric,regions |
| R2132 |
T9397 |
T9394 |
conj |
minor,major |
| R2133 |
T9379 |
T9377 |
pobj |
regions,of |
| R2134 |
T9380 |
T9378 |
cc |
and,pericentric |
| R2135 |
T9381 |
T9378 |
conj |
centric,pericentric |
| R2136 |
T9398 |
T9395 |
compound |
satellite,repeats |
| R2137 |
T9399 |
T9385 |
punct |
", ",composed |
| R2138 |
T9400 |
T9385 |
advmod |
respectively,composed |
| R2139 |
T9401 |
T9402 |
punct |
[,20 |
| R2140 |
T9488 |
T9486 |
punct |
),4B |
| R2141 |
T9489 |
T9459 |
punct |
.,observed |
| R2142 |
T9402 |
T9348 |
parataxis |
20,performed |
| R2143 |
T9491 |
T9492 |
amod |
Individual,domains |
| R2144 |
T9403 |
T9402 |
punct |
],20 |
| R2145 |
T9492 |
T9494 |
nsubjpass |
domains,found |
| R2146 |
T9493 |
T9492 |
amod |
pericentric,domains |
| R2147 |
T9404 |
T9348 |
punct |
.,performed |
| R2148 |
T9495 |
T9492 |
prep |
from,domains |
| R2149 |
T9496 |
T9497 |
amod |
single,chromosomes |
| R2150 |
T9497 |
T9495 |
pobj |
chromosomes,from |
| R2151 |
T9498 |
T9494 |
auxpass |
are,found |
| R2152 |
T9406 |
T9407 |
amod |
Pericentric,domains |
| R2153 |
T9499 |
T9494 |
advmod |
now,found |
| R2154 |
T9500 |
T9501 |
preconj |
either,isolated |
| R2155 |
T9501 |
T9494 |
oprd |
isolated,found |
| R2156 |
T9502 |
T9501 |
cc |
or,isolated |
| R2157 |
T9407 |
T9408 |
nsubj |
domains,form |
| R2158 |
T9503 |
T9501 |
conj |
aggregated,isolated |
| R2159 |
T9504 |
T9501 |
prep |
in,isolated |
| R2160 |
T9409 |
T9407 |
prep |
from,domains |
| R2161 |
T9505 |
T9506 |
det |
a,pattern |
| R2162 |
T9506 |
T9504 |
pobj |
pattern,in |
| R2163 |
T9507 |
T9508 |
advmod |
less,dense |
| R2164 |
T9508 |
T9506 |
amod |
dense,pattern |
| R2165 |
T9410 |
T9411 |
amod |
different,chromosomes |
| R2166 |
T9509 |
T9508 |
prep |
than,dense |
| R2167 |
T9510 |
T9511 |
det |
the,clusters |
| R2168 |
T9511 |
T9509 |
pobj |
clusters,than |
| R2169 |
T9411 |
T9409 |
pobj |
chromosomes,from |
| R2170 |
T9512 |
T9511 |
amod |
regular,clusters |
| R2171 |
T9513 |
T9511 |
acl |
observed,clusters |
| R2172 |
T9514 |
T9513 |
prep |
in,observed |
| R2173 |
T9412 |
T9408 |
dobj |
clusters,form |
| R2174 |
T9515 |
T9516 |
compound |
control,cells |
| R2175 |
T9516 |
T9514 |
pobj |
cells,in |
| R2176 |
T9517 |
T9518 |
punct |
(,4B |
| R2177 |
T9413 |
T9412 |
punct |
", ",clusters |
| R2178 |
T9518 |
T9494 |
parataxis |
4B,found |
| R2179 |
T9519 |
T9518 |
compound |
Figure,4B |
| R2180 |
T9520 |
T9518 |
punct |
),4B |
| R2181 |
T9521 |
T9494 |
punct |
.,found |
| R2182 |
T9523 |
T9524 |
amod |
Such,aggregates |
| R2183 |
T9414 |
T9415 |
dep |
which,revealed |
| R2184 |
T9524 |
T9525 |
nsubjpass |
aggregates,revealed |
| R2185 |
T9526 |
T9524 |
punct |
", ",aggregates |
| R2186 |
T9415 |
T9412 |
relcl |
revealed,clusters |
| R2187 |
T9527 |
T9528 |
dep |
which,found |
| R2188 |
T9528 |
T9524 |
relcl |
found,aggregates |
| R2189 |
T9529 |
T9528 |
auxpass |
are,found |
| R2190 |
T9416 |
T9415 |
auxpass |
are,revealed |
| R2191 |
T9530 |
T9528 |
advmod |
often,found |
| R2192 |
T9531 |
T9528 |
prep |
at,found |
| R2193 |
T9532 |
T9533 |
det |
the,periphery |
| R2194 |
T9417 |
T9415 |
prep |
by,revealed |
| R2195 |
T9533 |
T9531 |
pobj |
periphery,at |
| R2196 |
T9534 |
T9533 |
amod |
nuclear,periphery |
| R2197 |
T9535 |
T9525 |
punct |
", ",revealed |
| R2198 |
T9418 |
T9417 |
pobj |
FISH,by |
| R2199 |
T9536 |
T9525 |
auxpass |
are,revealed |
| R2200 |
T9537 |
T9525 |
advmod |
also,revealed |
| R2201 |
T9538 |
T9525 |
prep |
by,revealed |
| R2202 |
T9419 |
T9415 |
prep |
as,revealed |
| R2203 |
T9539 |
T9540 |
compound |
DAPI,staining |
| R2204 |
T9540 |
T9538 |
pobj |
staining,by |
| R2205 |
T9541 |
T9525 |
prep |
as,revealed |
| R2206 |
T9420 |
T9421 |
amod |
large,spots |
| R2207 |
T9542 |
T9543 |
det |
a,signature |
| R2208 |
T9543 |
T9541 |
pobj |
signature,as |
| R2209 |
T9544 |
T9543 |
amod |
typical,signature |
| R2210 |
T9421 |
T9419 |
pobj |
spots,as |
| R2211 |
T9545 |
T9543 |
prep |
of,signature |
| R2212 |
T9546 |
T9545 |
pobj |
p150CAF,of |
| R2213 |
T9547 |
T9546 |
punct |
-,p150CAF |
| R2214 |
T9422 |
T9423 |
dep |
that,coincide |
| R2215 |
T9548 |
T9546 |
nummod |
1,p150CAF |
| R2216 |
T9423 |
T9421 |
relcl |
coincide,spots |
| R2217 |
T9549 |
T9546 |
appos |
loss,p150CAF |
| R2218 |
T9550 |
T9549 |
punct |
-,loss |
| R2219 |
T9424 |
T9423 |
prep |
with,coincide |
| R2220 |
T9551 |
T9549 |
prep |
of,loss |
| R2221 |
T9552 |
T9551 |
punct |
-,of |
| R2222 |
T9425 |
T9426 |
npadvmod |
DAPI,dense |
| R2223 |
T9553 |
T9551 |
pobj |
function,of |
| R2224 |
T9554 |
T9525 |
punct |
.,revealed |
| R2225 |
T9556 |
T9557 |
nsubj |
Quantification,revealed |
| R2226 |
T9426 |
T9428 |
amod |
dense,foci |
| R2227 |
T9558 |
T9556 |
prep |
of,Quantification |
| R2228 |
T9559 |
T9558 |
pobj |
fluorescence,of |
| R2229 |
T9427 |
T9426 |
punct |
-,dense |
| R2230 |
T9560 |
T9556 |
prep |
along,Quantification |
| R2231 |
T9561 |
T9562 |
det |
a,line |
| R2232 |
T9428 |
T9424 |
pobj |
foci,with |
| R2233 |
T9562 |
T9560 |
pobj |
line,along |
| R2234 |
T9563 |
T9564 |
advmod |
randomly,drawn |
| R2235 |
T9564 |
T9562 |
acl |
drawn,line |
| R2236 |
T9565 |
T9564 |
prep |
across,drawn |
| R2237 |
T9566 |
T9567 |
det |
the,nucleus |
| R2238 |
T9567 |
T9565 |
pobj |
nucleus,across |
| R2239 |
T9568 |
T9569 |
amod |
lower,intensity |
| R2240 |
T9429 |
T9423 |
prep |
in,coincide |
| R2241 |
T9569 |
T9557 |
dobj |
intensity,revealed |
| R2242 |
T9570 |
T9569 |
compound |
fluorescence,intensity |
| R2243 |
T9571 |
T9569 |
cc |
and,intensity |
| R2244 |
T9430 |
T9431 |
det |
the,nucleus |
| R2245 |
T9572 |
T9573 |
det |
a,distribution |
| R2246 |
T9573 |
T9569 |
conj |
distribution,intensity |
| R2247 |
T9574 |
T9573 |
amod |
broader,distribution |
| R2248 |
T9431 |
T9429 |
pobj |
nucleus,in |
| R2249 |
T9575 |
T9573 |
prep |
of,distribution |
| R2250 |
T9576 |
T9575 |
pobj |
DAPI,of |
| R2251 |
T9577 |
T9576 |
cc |
and,DAPI |
| R2252 |
T9578 |
T9579 |
amod |
major,signals |
| R2253 |
T9432 |
T9431 |
compound |
interphase,nucleus |
| R2254 |
T9579 |
T9576 |
conj |
signals,DAPI |
| R2255 |
T9580 |
T9579 |
compound |
satellite,signals |
| R2256 |
T9433 |
T9434 |
punct |
(,4A |
| R2257 |
T9581 |
T9579 |
compound |
hybridization,signals |
| R2258 |
T9582 |
T9557 |
prep |
in,revealed |
| R2259 |
T9583 |
T9584 |
npadvmod |
p150CAF,depleted |
| R2260 |
T9584 |
T9588 |
amod |
depleted,cells |
| R2261 |
T9434 |
T9423 |
parataxis |
4A,coincide |
| R2262 |
T9585 |
T9583 |
punct |
-,p150CAF |
| R2263 |
T9586 |
T9583 |
nummod |
1,p150CAF |
| R2264 |
T9587 |
T9584 |
punct |
-,depleted |
| R2265 |
T9435 |
T9434 |
compound |
Figure,4A |
| R2266 |
T9588 |
T9582 |
pobj |
cells,in |
| R2267 |
T9589 |
T9590 |
punct |
(,4C |
| R2268 |
T9590 |
T9557 |
parataxis |
4C,revealed |
| R2269 |
T9436 |
T9434 |
punct |
),4A |
| R2270 |
T9591 |
T9590 |
compound |
Figure,4C |
| R2271 |
T9592 |
T9590 |
cc |
and,4C |
| R2272 |
T9593 |
T9590 |
conj |
4D,4C |
| R2273 |
T9437 |
T9408 |
punct |
.,form |
| R2274 |
T9439 |
T9440 |
prep |
At,form |
| R2275 |
T9594 |
T9590 |
punct |
),4C |
| R2276 |
T9441 |
T9442 |
det |
the,periphery |
| R2277 |
T9595 |
T9557 |
punct |
", ",revealed |
| R2278 |
T9596 |
T9557 |
advcl |
indicating,revealed |
| R2279 |
T9597 |
T9596 |
dobj |
decondensation,indicating |
| R2280 |
T9598 |
T9597 |
prep |
of,decondensation |
| R2281 |
T9442 |
T9439 |
pobj |
periphery,At |
| R2282 |
T9599 |
T9600 |
amod |
pericentric,domains |
| R2283 |
T9600 |
T9598 |
pobj |
domains,of |
| R2284 |
T9601 |
T9600 |
compound |
heterochromatin,domains |
| R2285 |
T9602 |
T9557 |
punct |
.,revealed |
| R2286 |
T9604 |
T9605 |
prep |
In,showed |
| R2287 |
T9443 |
T9442 |
prep |
of,periphery |
| R2288 |
T9606 |
T9604 |
pobj |
contrast,In |
| R2289 |
T9607 |
T9605 |
punct |
", ",showed |
| R2290 |
T9608 |
T9609 |
amod |
centric,domains |
| R2291 |
T9444 |
T9445 |
det |
each,domain |
| R2292 |
T9609 |
T9605 |
nsubj |
domains,showed |
| R2293 |
T9610 |
T9611 |
det |
an,intensity |
| R2294 |
T9445 |
T9443 |
pobj |
domain,of |
| R2295 |
T9611 |
T9605 |
dobj |
intensity,showed |
| R2296 |
T9612 |
T9611 |
cc |
and,intensity |
| R2297 |
T9613 |
T9611 |
conj |
shape,intensity |
| R2298 |
T9446 |
T9445 |
amod |
pericentric,domain |
| R2299 |
T9614 |
T9611 |
amod |
similar,intensity |
| R2300 |
T9615 |
T9614 |
prep |
to,similar |
| R2301 |
T9616 |
T9617 |
compound |
control,cells |
| R2302 |
T9447 |
T9440 |
punct |
", ",form |
| R2303 |
T9617 |
T9615 |
pobj |
cells,to |
| R2304 |
T9618 |
T9605 |
punct |
", ",showed |
| R2305 |
T9619 |
T9605 |
advcl |
suggesting,showed |
| R2306 |
T9448 |
T9449 |
amod |
centric,regions |
| R2307 |
T9620 |
T9621 |
mark |
that,remain |
| R2308 |
T9621 |
T9619 |
ccomp |
remain,suggesting |
| R2309 |
T9622 |
T9621 |
nsubj |
they,remain |
| R2310 |
T9449 |
T9440 |
nsubj |
regions,form |
| R2311 |
T9623 |
T9621 |
acomp |
unaffected,remain |
| R2312 |
T9624 |
T9623 |
prep |
by,unaffected |
| R2313 |
T9625 |
T9626 |
nmod |
p150CAF,depletion |
| R2314 |
T9450 |
T9451 |
amod |
individual,entities |
| R2315 |
T9626 |
T9624 |
pobj |
depletion,by |
| R2316 |
T9627 |
T9625 |
punct |
-,p150CAF |
| R2317 |
T9628 |
T9625 |
nummod |
1,p150CAF |
| R2318 |
T9451 |
T9440 |
dobj |
entities,form |
| R2319 |
T9629 |
T9630 |
punct |
(,4C |
| R2320 |
T9630 |
T9605 |
parataxis |
4C,showed |
| R2321 |
T9631 |
T9630 |
compound |
Figure,4C |
| R2322 |
T9452 |
T9453 |
punct |
(,4A |
| R2323 |
T9632 |
T9630 |
cc |
and,4C |
| R2324 |
T9453 |
T9440 |
parataxis |
4A,form |
| R2325 |
T9633 |
T9630 |
conj |
4D,4C |
| R2326 |
T9634 |
T9630 |
punct |
),4C |
| R2327 |
T9635 |
T9605 |
punct |
.,showed |
| R2328 |
T9454 |
T9453 |
compound |
Figure,4A |
| R2329 |
T9637 |
T9638 |
prep |
In,show |
| R2330 |
T9455 |
T9453 |
punct |
),4A |
| R2331 |
T9639 |
T9637 |
pobj |
conclusion,In |
| R2332 |
T9640 |
T9638 |
punct |
", ",show |
| R2333 |
T9641 |
T9642 |
det |
these,results |
| R2334 |
T9642 |
T9638 |
nsubj |
results,show |
| R2335 |
T9456 |
T9440 |
punct |
.,form |
| R2336 |
T9643 |
T9644 |
mark |
that,required |
| R2337 |
T9644 |
T9638 |
ccomp |
required,show |
| R2338 |
T9645 |
T9644 |
nsubjpass |
p150CAF,required |
| R2339 |
T9646 |
T9645 |
punct |
-,p150CAF |
| R2340 |
T9647 |
T9645 |
nummod |
1,p150CAF |
| R2341 |
T9458 |
T9459 |
prep |
In,observed |
| R2342 |
T9648 |
T9644 |
auxpass |
is,required |
| R2343 |
T9649 |
T9644 |
prep |
for,required |
| R2344 |
T9650 |
T9651 |
det |
the,condensation |
| R2345 |
T9651 |
T9649 |
pobj |
condensation,for |
| R2346 |
T9652 |
T9651 |
amod |
proper,condensation |
| R2347 |
T9460 |
T9461 |
nmod |
p150CAF,cells |
| R2348 |
T9653 |
T9651 |
cc |
and,condensation |
| R2349 |
T9654 |
T9651 |
conj |
clustering,condensation |
| R2350 |
T9655 |
T9651 |
prep |
of,condensation |
| R2351 |
T9656 |
T9657 |
amod |
pericentric,domains |
| R2352 |
T9461 |
T9458 |
pobj |
cells,In |
| R2353 |
T9657 |
T9655 |
pobj |
domains,of |
| R2354 |
T9658 |
T9657 |
compound |
heterochromatin,domains |
| R2355 |
T9462 |
T9460 |
punct |
-,p150CAF |
| R2356 |
T9659 |
T9638 |
punct |
.,show |
| R2357 |
T9661 |
T9662 |
prep |
Given,wondered |
| R2358 |
T9463 |
T9460 |
nummod |
1,p150CAF |
| R2359 |
T9663 |
T9664 |
det |
the,role |
| R2360 |
T9664 |
T9661 |
pobj |
role,Given |
| R2361 |
T9464 |
T9465 |
npadvmod |
RNAi,depleted |
| R2362 |
T9665 |
T9664 |
amod |
known,role |
| R2363 |
T9666 |
T9664 |
prep |
of,role |
| R2364 |
T9667 |
T9666 |
pobj |
CAF,of |
| R2365 |
T9465 |
T9461 |
amod |
depleted,cells |
| R2366 |
T9668 |
T9667 |
punct |
-,CAF |
| R2367 |
T9669 |
T9667 |
nummod |
1,CAF |
| R2368 |
T9670 |
T9664 |
prep |
in,role |
| R2369 |
T9466 |
T9465 |
punct |
-,depleted |
| R2370 |
T9671 |
T9672 |
det |
the,deposition |
| R2371 |
T9672 |
T9670 |
pobj |
deposition,in |
| R2372 |
T9673 |
T9672 |
prep |
of,deposition |
| R2373 |
T9674 |
T9675 |
compound |
histone,H3.1 |
| R2374 |
T9467 |
T9459 |
punct |
", ",observed |
| R2375 |
T9675 |
T9673 |
pobj |
H3.1,of |
| R2376 |
T9676 |
T9675 |
cc |
and,H3.1 |
| R2377 |
T9677 |
T9675 |
conj |
H4,H3.1 |
| R2378 |
T9468 |
T9459 |
nsubj |
we,observed |
| R2379 |
T9678 |
T9675 |
acl |
associated,H3.1 |
| R2380 |
T9679 |
T9678 |
prep |
with,associated |
| R2381 |
T9680 |
T9681 |
compound |
DNA,synthesis |
| R2382 |
T9469 |
T9470 |
det |
a,disruption |
| R2383 |
T9681 |
T9679 |
pobj |
synthesis,with |
| R2384 |
T9682 |
T9683 |
punct |
[,12 |
| R2385 |
T9683 |
T9664 |
parataxis |
12,role |
| R2386 |
T9470 |
T9459 |
dobj |
disruption,observed |
| R2387 |
T9684 |
T9683 |
nummod |
11,12 |
| R2388 |
T9685 |
T9683 |
punct |
",",12 |
| R2389 |
T9686 |
T9683 |
punct |
],12 |
| R2390 |
T9687 |
T9662 |
punct |
", ",wondered |
| R2391 |
T9688 |
T9662 |
nsubj |
we,wondered |
| R2392 |
T9689 |
T9690 |
mark |
whether,reflect |
| R2393 |
T9690 |
T9662 |
ccomp |
reflect,wondered |
| R2394 |
T9691 |
T9692 |
det |
this,defect |
| R2395 |
T9471 |
T9470 |
prep |
of,disruption |
| R2396 |
T9692 |
T9690 |
nsubj |
defect,reflect |
| R2397 |
T9693 |
T9692 |
prep |
in,defect |
| R2398 |
T9694 |
T9695 |
amod |
higher,order |
| R2399 |
T9472 |
T9473 |
amod |
pericentric,clusters |
| R2400 |
T9695 |
T9697 |
compound |
order,organization |
| R2401 |
T9696 |
T9695 |
punct |
-,order |
| R2402 |
T9697 |
T9693 |
pobj |
organization,in |
| R2403 |
T9698 |
T9697 |
compound |
chromatin,organization |
| R2404 |
T9473 |
T9471 |
pobj |
clusters,of |
| R2405 |
T9699 |
T9690 |
aux |
could,reflect |
| R2406 |
T9474 |
T9473 |
compound |
heterochromatin,clusters |
| R2407 |
T9475 |
T9476 |
dep |
that,coincides |
| R2408 |
T9476 |
T9470 |
relcl |
coincides,disruption |
| R2409 |
T9477 |
T9476 |
prep |
with,coincides |
| R2410 |
T9700 |
T9701 |
det |
an,organization |
| R2411 |
T9701 |
T9690 |
dobj |
organization,reflect |
| R2412 |
T9478 |
T9479 |
det |
the,disappearance |
| R2413 |
T9702 |
T9701 |
amod |
aberrant,organization |
| R2414 |
T9703 |
T9701 |
amod |
nucleosomal,organization |
| R2415 |
T9704 |
T9662 |
punct |
.,wondered |
| R2416 |
T9479 |
T9477 |
pobj |
disappearance,with |
| R2417 |
T9706 |
T9707 |
advcl |
Using,observe |
| R2418 |
T9480 |
T9479 |
prep |
of,disappearance |
| R2419 |
T9708 |
T9706 |
dobj |
DNase,Using |
| R2420 |
T9709 |
T9708 |
nummod |
I,DNase |
| R2421 |
T9481 |
T9482 |
npadvmod |
DAPI,dense |
| R2422 |
T9710 |
T9708 |
cc |
and,DNase |
| R2423 |
T9711 |
T9712 |
amod |
micrococcal,nuclease |
| R2424 |
T9712 |
T9713 |
nmod |
nuclease,assays |
| R2425 |
T9482 |
T9484 |
amod |
dense,foci |
| R2426 |
T9713 |
T9708 |
conj |
assays,DNase |
| R2427 |
T9714 |
T9712 |
punct |
(,nuclease |
| R2428 |
T9715 |
T9712 |
appos |
MNase,nuclease |
| R2429 |
T9483 |
T9482 |
punct |
-,dense |
| R2430 |
T9716 |
T9713 |
punct |
),assays |
| R2431 |
T9717 |
T9707 |
punct |
", ",observe |
| R2432 |
T9718 |
T9707 |
nsubj |
we,observe |
| R2433 |
T9484 |
T9480 |
pobj |
foci,of |
| R2434 |
T9719 |
T9707 |
aux |
could,observe |
| R2435 |
T9485 |
T9486 |
punct |
(,4B |
| R2436 |
T9720 |
T9707 |
neg |
not,observe |
| R2437 |
T9486 |
T9459 |
parataxis |
4B,observed |
| R2438 |
T9721 |
T9722 |
det |
any,difference |
| R2439 |
T9722 |
T9707 |
dobj |
difference,observe |
| R2440 |
T9723 |
T9722 |
amod |
significant,difference |
| R2441 |
T9724 |
T9722 |
prep |
between,difference |
| R2442 |
T9725 |
T9726 |
nmod |
control,cells |
| R2443 |
T9487 |
T9486 |
compound |
Figure,4B |
| R2444 |
T9726 |
T9724 |
pobj |
cells,between |
| R2445 |
T9727 |
T9725 |
cc |
and,control |
| R2446 |
T9728 |
T9729 |
npadvmod |
p150CAF,depleted |
| R2447 |
T9729 |
T9725 |
conj |
depleted,control |
| R2448 |
T9806 |
T9807 |
det |
all,conditions |
| R2449 |
T9730 |
T9728 |
punct |
-,p150CAF |
| R2450 |
T9731 |
T9728 |
nummod |
1,p150CAF |
| R2451 |
T9732 |
T9729 |
punct |
-,depleted |
| R2452 |
T9733 |
T9726 |
compound |
ES,cells |
| R2453 |
T9734 |
T9707 |
prep |
at,observe |
| R2454 |
T9735 |
T9736 |
det |
the,level |
| R2455 |
T9807 |
T9804 |
pobj |
conditions,In |
| R2456 |
T9736 |
T9734 |
pobj |
level,at |
| R2457 |
T9737 |
T9736 |
prep |
of,level |
| R2458 |
T9738 |
T9739 |
compound |
bulk,chromatin |
| R2459 |
T9739 |
T9737 |
pobj |
chromatin,of |
| R2460 |
T9808 |
T9805 |
punct |
", ",was |
| R2461 |
T9740 |
T9739 |
compound |
genome,chromatin |
| R2462 |
T9741 |
T9734 |
cc |
or,at |
| R2463 |
T9809 |
T9810 |
det |
the,amount |
| R2464 |
T9742 |
T9734 |
conj |
at,at |
| R2465 |
T9810 |
T9805 |
nsubj |
amount,was |
| R2466 |
T9743 |
T9744 |
amod |
pericentric,repeats |
| R2467 |
T9744 |
T9742 |
pobj |
repeats,at |
| R2468 |
T9811 |
T9810 |
prep |
of,amount |
| R2469 |
T9745 |
T9746 |
punct |
(,Figure |
| R2470 |
T9746 |
T9707 |
parataxis |
Figure,observe |
| R2471 |
T9747 |
T9746 |
nummod |
5,Figure |
| R2472 |
T9748 |
T9746 |
punct |
),Figure |
| R2473 |
T9812 |
T9813 |
compound |
histone,H3 |
| R2474 |
T9749 |
T9707 |
punct |
.,observe |
| R2475 |
T9751 |
T9752 |
prep |
In,compared |
| R2476 |
T9813 |
T9811 |
pobj |
H3,of |
| R2477 |
T9753 |
T9754 |
det |
a,series |
| R2478 |
T9814 |
T9810 |
acl |
remaining,amount |
| R2479 |
T9754 |
T9751 |
pobj |
series,In |
| R2480 |
T9755 |
T9754 |
amod |
second,series |
| R2481 |
T9756 |
T9754 |
prep |
of,series |
| R2482 |
T9815 |
T9810 |
acl |
associated,amount |
| R2483 |
T9757 |
T9756 |
pobj |
experiments,of |
| R2484 |
T9758 |
T9752 |
punct |
", ",compared |
| R2485 |
T9759 |
T9752 |
nsubj |
we,compared |
| R2486 |
T9816 |
T9815 |
prep |
with,associated |
| R2487 |
T9760 |
T9761 |
det |
the,association |
| R2488 |
T9761 |
T9752 |
dobj |
association,compared |
| R2489 |
T9762 |
T9761 |
prep |
of,association |
| R2490 |
T9763 |
T9764 |
compound |
histone,H3 |
| R2491 |
T9764 |
T9762 |
pobj |
H3,of |
| R2492 |
T9817 |
T9816 |
pobj |
chromatin,with |
| R2493 |
T9765 |
T9752 |
prep |
with,compared |
| R2494 |
T9766 |
T9765 |
pobj |
chromatin,with |
| R2495 |
T9767 |
T9752 |
prep |
in,compared |
| R2496 |
T9768 |
T9767 |
pobj |
nuclei,in |
| R2497 |
T9769 |
T9768 |
acl |
isolated,nuclei |
| R2498 |
T9770 |
T9769 |
prep |
from,isolated |
| R2499 |
T9771 |
T9770 |
pobj |
cells,from |
| R2500 |
T9772 |
T9771 |
acl |
transfected,cells |
| R2501 |
T9818 |
T9805 |
acomp |
indistinguishable,was |
| R2502 |
T9773 |
T9772 |
prep |
with,transfected |
| R2503 |
T9774 |
T9775 |
nmod |
control,vectors |
| R2504 |
T9775 |
T9773 |
pobj |
vectors,with |
| R2505 |
T9776 |
T9774 |
cc |
and,control |
| R2506 |
T9819 |
T9805 |
prep |
in,was |
| R2507 |
T9777 |
T9774 |
conj |
p150CAF,control |
| R2508 |
T9778 |
T9777 |
punct |
-,p150CAF |
| R2509 |
T9779 |
T9777 |
nummod |
1,p150CAF |
| R2510 |
T9820 |
T9821 |
nmod |
control,cells |
| R2511 |
T9780 |
T9775 |
compound |
RNAi,vectors |
| R2512 |
T9781 |
T9775 |
compound |
plasmid,vectors |
| R2513 |
T9782 |
T9752 |
punct |
.,compared |
| R2514 |
T9821 |
T9819 |
pobj |
cells,in |
| R2515 |
T9784 |
T9785 |
nsubjpass |
Nuclei,incubated |
| R2516 |
T9786 |
T9785 |
auxpass |
were,incubated |
| R2517 |
T9822 |
T9820 |
cc |
and,control |
| R2518 |
T9787 |
T9785 |
prep |
in,incubated |
| R2519 |
T9788 |
T9787 |
pobj |
buffers,in |
| R2520 |
T9823 |
T9824 |
npadvmod |
p150CAF,depleted |
| R2521 |
T9789 |
T9788 |
prep |
with,buffers |
| R2522 |
T9790 |
T9791 |
amod |
different,concentrations |
| R2523 |
T9791 |
T9789 |
pobj |
concentrations,with |
| R2524 |
T9824 |
T9820 |
conj |
depleted,control |
| R2525 |
T9792 |
T9791 |
compound |
salt,concentrations |
| R2526 |
T9793 |
T9791 |
acl |
ranging,concentrations |
| R2527 |
T9794 |
T9793 |
prep |
from,ranging |
| R2528 |
T9795 |
T9796 |
nummod |
100,mM |
| R2529 |
T9825 |
T9823 |
punct |
-,p150CAF |
| R2530 |
T9796 |
T9797 |
compound |
mM,NaCl |
| R2531 |
T9797 |
T9794 |
pobj |
NaCl,from |
| R2532 |
T9798 |
T9794 |
prep |
to,from |
| R2533 |
T9826 |
T9823 |
nummod |
1,p150CAF |
| R2534 |
T9799 |
T9800 |
nummod |
1,M |
| R2535 |
T9800 |
T9801 |
compound |
M,NaCl |
| R2536 |
T9801 |
T9798 |
pobj |
NaCl,to |
| R2537 |
T9802 |
T9785 |
punct |
.,incubated |
| R2538 |
T9827 |
T9824 |
punct |
-,depleted |
| R2539 |
T9804 |
T9805 |
prep |
In,was |
| R2540 |
T9828 |
T9821 |
compound |
ES,cells |
| R2541 |
T9829 |
T9830 |
punct |
(,data |
| R2542 |
T9830 |
T9805 |
meta |
data,was |
| R2543 |
T9831 |
T9830 |
amod |
unpublished,data |
| R2544 |
T9912 |
T9909 |
parataxis |
25,methylation |
| R2545 |
T9913 |
T9912 |
punct |
],25 |
| R2546 |
T9914 |
T9906 |
prep |
at,tested |
| R2547 |
T9915 |
T9916 |
amod |
major,repeats |
| R2548 |
T9832 |
T9830 |
punct |
),data |
| R2549 |
T9916 |
T9914 |
pobj |
repeats,at |
| R2550 |
T9917 |
T9916 |
compound |
satellite,repeats |
| R2551 |
T9918 |
T9906 |
cc |
and,tested |
| R2552 |
T9919 |
T9906 |
conj |
found,tested |
| R2553 |
T9833 |
T9805 |
punct |
.,was |
| R2554 |
T9920 |
T9921 |
det |
no,difference |
| R2555 |
T9921 |
T9919 |
dobj |
difference,found |
| R2556 |
T9922 |
T9921 |
amod |
significant,difference |
| R2557 |
T9923 |
T9921 |
prep |
between,difference |
| R2558 |
T9835 |
T9836 |
advmod |
Therefore,are |
| R2559 |
T9924 |
T9925 |
nmod |
control,cells |
| R2560 |
T9925 |
T9923 |
pobj |
cells,between |
| R2561 |
T9926 |
T9924 |
cc |
and,control |
| R2562 |
T9927 |
T9928 |
npadvmod |
p150CAF,depleted |
| R2563 |
T9928 |
T9924 |
conj |
depleted,control |
| R2564 |
T9837 |
T9836 |
punct |
", ",are |
| R2565 |
T9929 |
T9927 |
punct |
-,p150CAF |
| R2566 |
T9930 |
T9927 |
nummod |
1,p150CAF |
| R2567 |
T9931 |
T9928 |
punct |
-,depleted |
| R2568 |
T9932 |
T9933 |
punct |
(,Figure |
| R2569 |
T9838 |
T9839 |
det |
the,loss |
| R2570 |
T9933 |
T9919 |
parataxis |
Figure,found |
| R2571 |
T9934 |
T9933 |
nummod |
6,Figure |
| R2572 |
T9935 |
T9933 |
punct |
),Figure |
| R2573 |
T9839 |
T9836 |
nsubj |
loss,are |
| R2574 |
T9936 |
T9906 |
punct |
.,tested |
| R2575 |
T9938 |
T9939 |
mark |
As,is |
| R2576 |
T9840 |
T9839 |
prep |
of,loss |
| R2577 |
T9939 |
T9952 |
advcl |
is,reduced |
| R2578 |
T9940 |
T9941 |
det |
the,line |
| R2579 |
T9941 |
T9939 |
nsubj |
line,is |
| R2580 |
T9841 |
T9840 |
pobj |
clustering,of |
| R2581 |
T9942 |
T9941 |
compound |
LTM7,line |
| R2582 |
T9943 |
T9941 |
compound |
ES,line |
| R2583 |
T9944 |
T9941 |
compound |
cell,line |
| R2584 |
T9842 |
T9839 |
cc |
and,loss |
| R2585 |
T9945 |
T9946 |
dep |
that,used |
| R2586 |
T9946 |
T9941 |
relcl |
used,line |
| R2587 |
T9947 |
T9946 |
nsubj |
we,used |
| R2588 |
T9948 |
T9946 |
prep |
in,used |
| R2589 |
T9843 |
T9839 |
conj |
decondensation,loss |
| R2590 |
T9949 |
T9950 |
poss |
our,experiments |
| R2591 |
T9950 |
T9948 |
pobj |
experiments,in |
| R2592 |
T9951 |
T9950 |
compound |
RNAi,experiments |
| R2593 |
T9844 |
T9843 |
prep |
of,decondensation |
| R2594 |
T9953 |
T9954 |
det |
a,line |
| R2595 |
T9954 |
T9939 |
attr |
line,is |
| R2596 |
T9845 |
T9846 |
amod |
pericentric,heterochromatin |
| R2597 |
T9955 |
T9954 |
amod |
female,line |
| R2598 |
T9956 |
T9957 |
punct |
(,XX |
| R2599 |
T9957 |
T9955 |
parataxis |
XX,female |
| R2600 |
T9958 |
T9957 |
punct |
),XX |
| R2601 |
T9959 |
T9954 |
compound |
cell,line |
| R2602 |
T9960 |
T9952 |
punct |
", ",reduced |
| R2603 |
T9961 |
T9962 |
compound |
DNA,methylation |
| R2604 |
T9962 |
T9952 |
nsubjpass |
methylation,reduced |
| R2605 |
T9846 |
T9844 |
pobj |
heterochromatin,of |
| R2606 |
T9963 |
T9952 |
auxpass |
is,reduced |
| R2607 |
T9964 |
T9952 |
advmod |
globally,reduced |
| R2608 |
T9965 |
T9952 |
prep |
in,reduced |
| R2609 |
T9847 |
T9836 |
acomp |
unlikely,are |
| R2610 |
T9966 |
T9967 |
det |
these,cells |
| R2611 |
T9967 |
T9965 |
pobj |
cells,in |
| R2612 |
T9968 |
T9969 |
punct |
[,26 |
| R2613 |
T9969 |
T9952 |
parataxis |
26,reduced |
| R2614 |
T9848 |
T9849 |
aux |
to,be |
| R2615 |
T9970 |
T9969 |
punct |
],26 |
| R2616 |
T9971 |
T9952 |
punct |
.,reduced |
| R2617 |
T9849 |
T9847 |
xcomp |
be,unlikely |
| R2618 |
T9973 |
T9974 |
aux |
To,rule |
| R2619 |
T9974 |
T9975 |
advcl |
rule,tested |
| R2620 |
T9976 |
T9974 |
prt |
out,rule |
| R2621 |
T9977 |
T9978 |
det |
the,possibility |
| R2622 |
T9978 |
T9974 |
dobj |
possibility,rule |
| R2623 |
T9979 |
T9980 |
mark |
that,contribute |
| R2624 |
T9850 |
T9851 |
det |
the,consequence |
| R2625 |
T9851 |
T9849 |
attr |
consequence,be |
| R2626 |
T9980 |
T9978 |
acl |
contribute,possibility |
| R2627 |
T9981 |
T9980 |
nsubj |
hypomethylation,contribute |
| R2628 |
T9982 |
T9981 |
prep |
of,hypomethylation |
| R2629 |
T9983 |
T9984 |
amod |
pericentric,repeats |
| R2630 |
T9852 |
T9851 |
prep |
of,consequence |
| R2631 |
T9984 |
T9982 |
pobj |
repeats,of |
| R2632 |
T9985 |
T9980 |
aux |
might,contribute |
| R2633 |
T9986 |
T9980 |
prep |
to,contribute |
| R2634 |
T9987 |
T9988 |
det |
the,destabilization |
| R2635 |
T9853 |
T9854 |
amod |
severe,defects |
| R2636 |
T9988 |
T9986 |
pobj |
destabilization,to |
| R2637 |
T9989 |
T9988 |
prep |
of,destabilization |
| R2638 |
T9990 |
T9991 |
compound |
heterochromatin,domains |
| R2639 |
T9854 |
T9852 |
pobj |
defects,of |
| R2640 |
T9991 |
T9989 |
pobj |
domains,of |
| R2641 |
T9992 |
T9980 |
prep |
in,contribute |
| R2642 |
T9993 |
T9994 |
npadvmod |
p150CAF,depleted |
| R2643 |
T9994 |
T9998 |
amod |
depleted,cells |
| R2644 |
T9995 |
T9993 |
punct |
-,p150CAF |
| R2645 |
T9855 |
T9854 |
prep |
in,defects |
| R2646 |
T9996 |
T9993 |
nummod |
1,p150CAF |
| R2647 |
T9997 |
T9994 |
punct |
-,depleted |
| R2648 |
T9998 |
T9992 |
pobj |
cells,in |
| R2649 |
T9999 |
T9998 |
compound |
ES,cells |
| R2650 |
T10000 |
T9975 |
punct |
", ",tested |
| R2651 |
T10001 |
T9975 |
nsubj |
we,tested |
| R2652 |
T10002 |
T10003 |
poss |
our,vector |
| R2653 |
T10003 |
T9975 |
dobj |
vector,tested |
| R2654 |
T9856 |
T9857 |
amod |
nucleosomal,organization |
| R2655 |
T10004 |
T10003 |
compound |
RNAi,vector |
| R2656 |
T10005 |
T10003 |
compound |
plasmid,vector |
| R2657 |
T10006 |
T9975 |
prep |
in,tested |
| R2658 |
T10007 |
T10008 |
det |
a,line |
| R2659 |
T9857 |
T9855 |
pobj |
organization,in |
| R2660 |
T10008 |
T10006 |
pobj |
line,in |
| R2661 |
T10009 |
T10008 |
compound |
XY,line |
| R2662 |
T10010 |
T10008 |
compound |
ES,line |
| R2663 |
T9858 |
T9836 |
punct |
.,are |
| R2664 |
T10011 |
T10008 |
compound |
cell,line |
| R2665 |
T10012 |
T9975 |
punct |
", ",tested |
| R2666 |
T10013 |
T9975 |
cc |
and,tested |
| R2667 |
T9860 |
T9861 |
poss |
Our,findings |
| R2668 |
T10014 |
T9975 |
conj |
confirmed,tested |
| R2669 |
T10015 |
T10016 |
mark |
that,leads |
| R2670 |
T10016 |
T10014 |
ccomp |
leads,confirmed |
| R2671 |
T9861 |
T9862 |
nsubj |
findings,showed |
| R2672 |
T9863 |
T9864 |
mark |
that,altered |
| R2673 |
T10017 |
T10016 |
nsubj |
loss,leads |
| R2674 |
T10018 |
T10017 |
prep |
of,loss |
| R2675 |
T10019 |
T10018 |
pobj |
p150CAF,of |
| R2676 |
T9864 |
T9862 |
ccomp |
altered,showed |
| R2677 |
T10020 |
T10019 |
punct |
-,p150CAF |
| R2678 |
T10021 |
T10019 |
nummod |
1,p150CAF |
| R2679 |
T10022 |
T10016 |
prep |
to,leads |
| R2680 |
T10023 |
T10022 |
pobj |
disruption,to |
| R2681 |
T9865 |
T9866 |
det |
the,localization |
| R2682 |
T10024 |
T10023 |
prep |
of,disruption |
| R2683 |
T10025 |
T10026 |
compound |
heterochromatin,organization |
| R2684 |
T10026 |
T10024 |
pobj |
organization,of |
| R2685 |
T9866 |
T9864 |
nsubjpass |
localization,altered |
| R2686 |
T10027 |
T10016 |
advmod |
independently,leads |
| R2687 |
T10028 |
T10027 |
prep |
of,independently |
| R2688 |
T10029 |
T10030 |
det |
the,degree |
| R2689 |
T9867 |
T9866 |
amod |
nuclear,localization |
| R2690 |
T10030 |
T10028 |
pobj |
degree,of |
| R2691 |
T10031 |
T10030 |
prep |
of,degree |
| R2692 |
T10032 |
T10033 |
compound |
DNA,methylation |
| R2693 |
T10033 |
T10031 |
pobj |
methylation,of |
| R2694 |
T10034 |
T10030 |
prep |
at,degree |
| R2695 |
T9868 |
T9866 |
prep |
of,localization |
| R2696 |
T10035 |
T10036 |
amod |
pericentric,repeats |
| R2697 |
T10036 |
T10034 |
pobj |
repeats,at |
| R2698 |
T10037 |
T10038 |
punct |
(,data |
| R2699 |
T10038 |
T10014 |
meta |
data,confirmed |
| R2700 |
T10039 |
T10038 |
amod |
unpublished,data |
| R2701 |
T10040 |
T10038 |
punct |
),data |
| R2702 |
T10041 |
T9975 |
punct |
.,tested |
| R2703 |
T10043 |
T10044 |
nsubj |
We,analyzed |
| R2704 |
T9869 |
T9868 |
pobj |
HP1α,of |
| R2705 |
T10045 |
T10044 |
advmod |
next,analyzed |
| R2706 |
T10046 |
T10047 |
amod |
specific,modifications |
| R2707 |
T10047 |
T10044 |
dobj |
modifications,analyzed |
| R2708 |
T10048 |
T10047 |
compound |
histone,modifications |
| R2709 |
T10049 |
T10050 |
punct |
[,27 |
| R2710 |
T9870 |
T9864 |
auxpass |
is,altered |
| R2711 |
T10050 |
T10047 |
parataxis |
27,modifications |
| R2712 |
T10051 |
T10050 |
punct |
],27 |
| R2713 |
T10052 |
T10044 |
prep |
in,analyzed |
| R2714 |
T9871 |
T9864 |
advmod |
severely,altered |
| R2715 |
T10053 |
T10054 |
nmod |
chromatin,immunoprecipitation |
| R2716 |
T10054 |
T10055 |
nmod |
immunoprecipitation,experiments |
| R2717 |
T10055 |
T10052 |
pobj |
experiments,in |
| R2718 |
T9872 |
T9864 |
prep |
in,altered |
| R2719 |
T10056 |
T10054 |
punct |
(,immunoprecipitation |
| R2720 |
T10057 |
T10054 |
appos |
ChIP,immunoprecipitation |
| R2721 |
T10058 |
T10055 |
punct |
),experiments |
| R2722 |
T10059 |
T10055 |
acl |
using,experiments |
| R2723 |
T9873 |
T9874 |
nmod |
Chaf1a,embryos |
| R2724 |
T10060 |
T10061 |
amod |
native,chromatin |
| R2725 |
T10061 |
T10059 |
dobj |
chromatin,using |
| R2726 |
T9874 |
T9872 |
pobj |
embryos,in |
| R2727 |
T10062 |
T10063 |
punct |
[,28 |
| R2728 |
T10063 |
T10044 |
parataxis |
28,analyzed |
| R2729 |
T9875 |
T9873 |
punct |
−,Chaf1a |
| R2730 |
T10064 |
T10063 |
punct |
],28 |
| R2731 |
T9876 |
T9873 |
punct |
/,Chaf1a |
| R2732 |
T10065 |
T10044 |
punct |
.,analyzed |
| R2733 |
T10067 |
T10068 |
nsubj |
We,found |
| R2734 |
T9877 |
T9873 |
punct |
−,Chaf1a |
| R2735 |
T10069 |
T10070 |
mark |
that,immunoprecipitated |
| R2736 |
T10070 |
T10068 |
ccomp |
immunoprecipitated,found |
| R2737 |
T9878 |
T9874 |
cc |
and,embryos |
| R2738 |
T10071 |
T10072 |
amod |
pericentric,DNA |
| R2739 |
T10072 |
T10070 |
nsubjpass |
DNA,immunoprecipitated |
| R2740 |
T10073 |
T10070 |
auxpass |
was,immunoprecipitated |
| R2741 |
T10074 |
T10070 |
prep |
with,immunoprecipitated |
| R2742 |
T9879 |
T9880 |
npadvmod |
p150CAF,depleted |
| R2743 |
T10075 |
T10076 |
det |
a,efficiency |
| R2744 |
T10076 |
T10074 |
pobj |
efficiency,with |
| R2745 |
T9880 |
T9884 |
amod |
depleted,cells |
| R2746 |
T10077 |
T10078 |
npadvmod |
2,lower |
| R2747 |
T10078 |
T10076 |
amod |
lower,efficiency |
| R2748 |
T10079 |
T10077 |
punct |
-,2 |
| R2749 |
T10080 |
T10077 |
advmod |
fold,2 |
| R2750 |
T9881 |
T9879 |
punct |
-,p150CAF |
| R2751 |
T10081 |
T10070 |
prep |
with,immunoprecipitated |
| R2752 |
T10082 |
T10083 |
nmod |
H4K20me3,antibodies |
| R2753 |
T10083 |
T10081 |
pobj |
antibodies,with |
| R2754 |
T10084 |
T10085 |
punct |
[,30 |
| R2755 |
T10085 |
T10082 |
parataxis |
30,H4K20me3 |
| R2756 |
T10086 |
T10085 |
nummod |
29,30 |
| R2757 |
T10087 |
T10085 |
punct |
",",30 |
| R2758 |
T9882 |
T9879 |
nummod |
1,p150CAF |
| R2759 |
T10088 |
T10085 |
punct |
],30 |
| R2760 |
T10089 |
T10070 |
prep |
following,immunoprecipitated |
| R2761 |
T10090 |
T10091 |
nmod |
p150CAF,depletion |
| R2762 |
T9883 |
T9880 |
punct |
-,depleted |
| R2763 |
T10091 |
T10089 |
pobj |
depletion,following |
| R2764 |
T10092 |
T10090 |
punct |
-,p150CAF |
| R2765 |
T10093 |
T10090 |
nummod |
1,p150CAF |
| R2766 |
T9884 |
T9874 |
conj |
cells,embryos |
| R2767 |
T10094 |
T10095 |
punct |
(,7A |
| R2768 |
T10095 |
T10068 |
parataxis |
7A,found |
| R2769 |
T10096 |
T10095 |
compound |
Figure,7A |
| R2770 |
T10097 |
T10095 |
cc |
and,7A |
| R2771 |
T9885 |
T9884 |
compound |
ES,cells |
| R2772 |
T10098 |
T10095 |
conj |
7B,7A |
| R2773 |
T10099 |
T10095 |
punct |
),7A |
| R2774 |
T10100 |
T10068 |
punct |
.,found |
| R2775 |
T9886 |
T9862 |
punct |
.,showed |
| R2776 |
T10102 |
T10103 |
nsubjpass |
Immunoprecipitation,affected |
| R2777 |
T10104 |
T10102 |
prep |
of,Immunoprecipitation |
| R2778 |
T9888 |
T9889 |
nsubj |
We,examined |
| R2779 |
T10105 |
T10106 |
amod |
minor,repeats |
| R2780 |
T10106 |
T10104 |
pobj |
repeats,of |
| R2781 |
T10107 |
T10106 |
compound |
satellite,repeats |
| R2782 |
T10108 |
T10102 |
prep |
in,Immunoprecipitation |
| R2783 |
T10109 |
T10110 |
det |
the,experiment |
| R2784 |
T9890 |
T9889 |
advmod |
therefore,examined |
| R2785 |
T10110 |
T10108 |
pobj |
experiment,in |
| R2786 |
T10111 |
T10110 |
amod |
same,experiment |
| R2787 |
T10112 |
T10103 |
auxpass |
was,affected |
| R2788 |
T10113 |
T10103 |
advmod |
less,affected |
| R2789 |
T10114 |
T10115 |
punct |
(,7B |
| R2790 |
T9891 |
T9892 |
det |
the,status |
| R2791 |
T10115 |
T10103 |
parataxis |
7B,affected |
| R2792 |
T10116 |
T10115 |
compound |
Figure,7B |
| R2793 |
T10117 |
T10115 |
punct |
),7B |
| R2794 |
T9892 |
T9889 |
dobj |
status,examined |
| R2795 |
T10118 |
T10103 |
punct |
", ",affected |
| R2796 |
T10119 |
T10103 |
advcl |
showing,affected |
| R2797 |
T10120 |
T10121 |
mark |
that,affects |
| R2798 |
T9893 |
T9892 |
prep |
of,status |
| R2799 |
T10121 |
T10119 |
ccomp |
affects,showing |
| R2800 |
T9894 |
T9895 |
amod |
other,marks |
| R2801 |
T9895 |
T9893 |
pobj |
marks,of |
| R2802 |
T9896 |
T9895 |
amod |
epigenetic,marks |
| R2803 |
T10122 |
T10121 |
nsubj |
loss,affects |
| R2804 |
T10123 |
T10122 |
prep |
of,loss |
| R2805 |
T10124 |
T10125 |
nmod |
p150CAF,function |
| R2806 |
T10125 |
T10123 |
pobj |
function,of |
| R2807 |
T10126 |
T10124 |
punct |
-,p150CAF |
| R2808 |
T9897 |
T9898 |
advmod |
previously,shown |
| R2809 |
T10127 |
T10124 |
nummod |
1,p150CAF |
| R2810 |
T10128 |
T10121 |
advmod |
mainly,affects |
| R2811 |
T10129 |
T10121 |
dobj |
H4K20me3,affects |
| R2812 |
T10130 |
T10129 |
prep |
at,H4K20me3 |
| R2813 |
T9898 |
T9895 |
acl |
shown,marks |
| R2814 |
T10131 |
T10132 |
amod |
pericentric,heterochromatin |
| R2815 |
T9899 |
T9900 |
aux |
to,characterize |
| R2816 |
T10132 |
T10130 |
pobj |
heterochromatin,at |
| R2817 |
T9900 |
T9898 |
xcomp |
characterize,shown |
| R2818 |
T10133 |
T10103 |
punct |
.,affected |
| R2819 |
T9901 |
T9902 |
amod |
pericentric,heterochromatin |
| R2820 |
T10135 |
T10136 |
advmod |
Moreover,detected |
| R2821 |
T9902 |
T9900 |
dobj |
heterochromatin,characterize |
| R2822 |
T10137 |
T10136 |
punct |
", ",detected |
| R2823 |
T10138 |
T10139 |
det |
no,difference |
| R2824 |
T9903 |
T9889 |
punct |
.,examined |
| R2825 |
T10139 |
T10136 |
nsubjpass |
difference,detected |
| R2826 |
T10140 |
T10139 |
amod |
significant,difference |
| R2827 |
T10141 |
T10139 |
prep |
in,difference |
| R2828 |
T9905 |
T9906 |
nsubj |
We,tested |
| R2829 |
T10142 |
T10143 |
compound |
immunoprecipitation,efficiency |
| R2830 |
T10143 |
T10141 |
pobj |
efficiency,in |
| R2831 |
T10144 |
T10136 |
auxpass |
was,detected |
| R2832 |
T10145 |
T10136 |
prep |
at,detected |
| R2833 |
T9907 |
T9906 |
advmod |
first,tested |
| R2834 |
T10146 |
T10147 |
amod |
intracisternal,particle |
| R2835 |
T10147 |
T10149 |
nmod |
particle,elements |
| R2836 |
T10148 |
T10147 |
nmod |
A,particle |
| R2837 |
T9908 |
T9909 |
compound |
DNA,methylation |
| R2838 |
T10149 |
T10145 |
pobj |
elements,at |
| R2839 |
T10150 |
T10147 |
punct |
(,particle |
| R2840 |
T9909 |
T9906 |
dobj |
methylation,tested |
| R2841 |
T10151 |
T10147 |
appos |
IAP,particle |
| R2842 |
T10152 |
T10149 |
punct |
),elements |
| R2843 |
T10153 |
T10154 |
punct |
(,7B |
| R2844 |
T9910 |
T9909 |
compound |
CpG,methylation |
| R2845 |
T10154 |
T10149 |
parataxis |
7B,elements |
| R2846 |
T10155 |
T10154 |
compound |
Figure,7B |
| R2847 |
T10156 |
T10154 |
punct |
),7B |
| R2848 |
T9911 |
T9912 |
punct |
[,25 |
| R2849 |
T10157 |
T10149 |
punct |
", ",elements |
| R2850 |
T10158 |
T10159 |
dep |
which,are |
| R2851 |
T10159 |
T10149 |
relcl |
are,elements |
| R2852 |
T10227 |
T10224 |
conj |
7B,7A |
| R2853 |
T10160 |
T10161 |
amod |
noncentromeric,elements |
| R2854 |
T10161 |
T10159 |
attr |
elements,are |
| R2855 |
T10162 |
T10161 |
amod |
repeated,elements |
| R2856 |
T10163 |
T10161 |
compound |
DNA,elements |
| R2857 |
T10164 |
T10165 |
advmod |
also,enriched |
| R2858 |
T10165 |
T10161 |
acl |
enriched,elements |
| R2859 |
T10166 |
T10165 |
prep |
in,enriched |
| R2860 |
T10167 |
T10166 |
pobj |
H4K20me3,in |
| R2861 |
T10168 |
T10169 |
punct |
[,31 |
| R2862 |
T10228 |
T10224 |
punct |
),7A |
| R2863 |
T10169 |
T10136 |
parataxis |
31,detected |
| R2864 |
T10170 |
T10169 |
punct |
],31 |
| R2865 |
T10171 |
T10136 |
punct |
.,detected |
| R2866 |
T10229 |
T10201 |
punct |
.,reduced |
| R2867 |
T10173 |
T10174 |
det |
This,result |
| R2868 |
T10174 |
T10175 |
nsubj |
result,shows |
| R2869 |
T10231 |
T10232 |
prep |
In,are |
| R2870 |
T10176 |
T10177 |
mark |
that,contributes |
| R2871 |
T10177 |
T10175 |
ccomp |
contributes,shows |
| R2872 |
T10178 |
T10177 |
nsubj |
p150CAF,contributes |
| R2873 |
T10179 |
T10178 |
punct |
-,p150CAF |
| R2874 |
T10233 |
T10234 |
amod |
wild,type |
| R2875 |
T10180 |
T10178 |
nummod |
1,p150CAF |
| R2876 |
T10181 |
T10177 |
prep |
to,contributes |
| R2877 |
T10182 |
T10183 |
amod |
normal,levels |
| R2878 |
T10183 |
T10181 |
pobj |
levels,to |
| R2879 |
T10234 |
T10236 |
compound |
type,cells |
| R2880 |
T10184 |
T10183 |
prep |
of,levels |
| R2881 |
T10185 |
T10184 |
pobj |
H4K20me3,of |
| R2882 |
T10186 |
T10177 |
prep |
at,contributes |
| R2883 |
T10235 |
T10234 |
punct |
-,type |
| R2884 |
T10187 |
T10188 |
amod |
pericentric,heterochromatin |
| R2885 |
T10188 |
T10186 |
pobj |
heterochromatin,at |
| R2886 |
T10189 |
T10177 |
punct |
", ",contributes |
| R2887 |
T10190 |
T10177 |
cc |
but,contributes |
| R2888 |
T10236 |
T10231 |
pobj |
cells,In |
| R2889 |
T10191 |
T10192 |
neg |
not,necessarily |
| R2890 |
T10192 |
T10177 |
conj |
necessarily,contributes |
| R2891 |
T10237 |
T10232 |
punct |
", ",are |
| R2892 |
T10193 |
T10192 |
prep |
at,necessarily |
| R2893 |
T10194 |
T10195 |
amod |
other,loci |
| R2894 |
T10195 |
T10193 |
pobj |
loci,at |
| R2895 |
T10238 |
T10232 |
nsubj |
most,are |
| R2896 |
T10196 |
T10175 |
punct |
.,shows |
| R2897 |
T10198 |
T10199 |
det |
The,mark |
| R2898 |
T10199 |
T10201 |
nsubjpass |
mark,reduced |
| R2899 |
T10200 |
T10199 |
compound |
H3K9me3,mark |
| R2900 |
T10239 |
T10238 |
prep |
of,most |
| R2901 |
T10202 |
T10203 |
punct |
[,32 |
| R2902 |
T10203 |
T10199 |
parataxis |
32,mark |
| R2903 |
T10240 |
T10241 |
nmod |
H4K20me3,signals |
| R2904 |
T10204 |
T10203 |
punct |
],32 |
| R2905 |
T10205 |
T10201 |
auxpass |
was,reduced |
| R2906 |
T10206 |
T10201 |
advmod |
also,reduced |
| R2907 |
T10241 |
T10239 |
pobj |
signals,of |
| R2908 |
T10207 |
T10201 |
advmod |
significantly,reduced |
| R2909 |
T10208 |
T10201 |
prep |
in,reduced |
| R2910 |
T10209 |
T10210 |
npadvmod |
p150CAF,depleted |
| R2911 |
T10210 |
T10214 |
amod |
depleted,cells |
| R2912 |
T10211 |
T10209 |
punct |
-,p150CAF |
| R2913 |
T10212 |
T10209 |
nummod |
1,p150CAF |
| R2914 |
T10213 |
T10210 |
punct |
-,depleted |
| R2915 |
T10242 |
T10240 |
cc |
and,H4K20me3 |
| R2916 |
T10214 |
T10208 |
pobj |
cells,in |
| R2917 |
T10215 |
T10201 |
punct |
", ",reduced |
| R2918 |
T10216 |
T10217 |
mark |
though,to |
| R2919 |
T10217 |
T10201 |
advcl |
to,reduced |
| R2920 |
T10243 |
T10240 |
conj |
H3K9me3,H4K20me3 |
| R2921 |
T10218 |
T10219 |
det |
a,extent |
| R2922 |
T10219 |
T10217 |
pobj |
extent,to |
| R2923 |
T10220 |
T10219 |
amod |
lesser,extent |
| R2924 |
T10244 |
T10232 |
acomp |
present,are |
| R2925 |
T10221 |
T10219 |
prep |
than,extent |
| R2926 |
T10222 |
T10221 |
pobj |
H4K20me3,than |
| R2927 |
T10223 |
T10224 |
punct |
(,7A |
| R2928 |
T10245 |
T10232 |
prep |
at,are |
| R2929 |
T10224 |
T10201 |
parataxis |
7A,reduced |
| R2930 |
T10225 |
T10224 |
compound |
Figure,7A |
| R2931 |
T10226 |
T10224 |
cc |
and,7A |
| R2932 |
T10246 |
T10247 |
det |
the,level |
| R2933 |
T10247 |
T10245 |
pobj |
level,at |
| R2934 |
T10248 |
T10247 |
prep |
of,level |
| R2935 |
T10249 |
T10250 |
npadvmod |
DAPI,dense |
| R2937 |
T10250 |
T10252 |
amod |
dense,domains |
| R2939 |
T10251 |
T10250 |
punct |
-,dense |
| R2943 |
T10252 |
T10248 |
pobj |
domains,of |
| R2946 |
T10253 |
T10254 |
advmod |
when,visualized |
| R2950 |
T10254 |
T10232 |
advcl |
visualized,are |
| R2955 |
T10255 |
T10254 |
prep |
by,visualized |
| R2958 |
T10256 |
T10255 |
pobj |
IF,by |
| R2965 |
T10257 |
T10258 |
punct |
[,29 |
| R2969 |
T10258 |
T10254 |
parataxis |
29,visualized |
| R2972 |
T10361 |
T10362 |
compound |
ES,cells |
| R2973 |
T10362 |
T10360 |
pobj |
cells,in |
| R2974 |
T10259 |
T10258 |
punct |
],29 |
| R2975 |
T10363 |
T10354 |
prep |
to,leads |
| R2976 |
T10364 |
T10365 |
det |
a,disruption |
| R2977 |
T10365 |
T10363 |
pobj |
disruption,to |
| R2978 |
T10260 |
T10261 |
punct |
(,7C |
| R2979 |
T10366 |
T10365 |
amod |
simultaneous,disruption |
| R2980 |
T10367 |
T10365 |
prep |
of,disruption |
| R2981 |
T10368 |
T10369 |
nmod |
heterochromatin,organization |
| R2982 |
T10261 |
T10232 |
parataxis |
7C,are |
| R2983 |
T10369 |
T10367 |
pobj |
organization,of |
| R2984 |
T10370 |
T10371 |
nummod |
3,D |
| R2985 |
T10371 |
T10369 |
compound |
D,organization |
| R2986 |
T10262 |
T10261 |
compound |
Figures,7C |
| R2987 |
T10372 |
T10371 |
punct |
-,D |
| R2988 |
T10373 |
T10365 |
cc |
and,disruption |
| R2989 |
T10374 |
T10375 |
det |
an,alteration |
| R2990 |
T10375 |
T10365 |
conj |
alteration,disruption |
| R2991 |
T10263 |
T10261 |
cc |
and,7C |
| R2992 |
T10376 |
T10375 |
prep |
in,alteration |
| R2993 |
T10377 |
T10378 |
amod |
epigenetic,marking |
| R2994 |
T10264 |
T10261 |
conj |
7D,7C |
| R2995 |
T10378 |
T10376 |
pobj |
marking,in |
| R2996 |
T10379 |
T10349 |
punct |
.,show |
| R2997 |
T10265 |
T10261 |
punct |
),7C |
| R2998 |
T10266 |
T10232 |
punct |
.,are |
| R2999 |
T10268 |
T10269 |
nsubjpass |
H3K9me3,perturbed |
| R3000 |
T10270 |
T10269 |
auxpass |
was,perturbed |
| R3001 |
T10271 |
T10269 |
advmod |
severely,perturbed |
| R3002 |
T10272 |
T10269 |
prep |
in,perturbed |
| R3003 |
T10273 |
T10274 |
npadvmod |
p150CAF,depleted |
| R3004 |
T10274 |
T10278 |
amod |
depleted,cells |
| R3005 |
T10275 |
T10273 |
punct |
-,p150CAF |
| R3006 |
T10276 |
T10273 |
nummod |
1,p150CAF |
| R3007 |
T10277 |
T10274 |
punct |
-,depleted |
| R3008 |
T10278 |
T10272 |
pobj |
cells,in |
| R3009 |
T10279 |
T10269 |
punct |
", ",perturbed |
| R3010 |
T10280 |
T10269 |
advcl |
displaying,perturbed |
| R3011 |
T10281 |
T10282 |
det |
a,pattern |
| R3012 |
T10282 |
T10280 |
dobj |
pattern,displaying |
| R3013 |
T10283 |
T10282 |
amod |
diffuse,pattern |
| R3014 |
T10284 |
T10282 |
amod |
similar,pattern |
| R3015 |
T10285 |
T10284 |
prep |
to,similar |
| R3016 |
T10286 |
T10285 |
pobj |
HP1α,to |
| R3017 |
T10287 |
T10288 |
punct |
(,7C |
| R3018 |
T10288 |
T10269 |
parataxis |
7C,perturbed |
| R3019 |
T10289 |
T10288 |
compound |
Figure,7C |
| R3020 |
T10290 |
T10288 |
punct |
),7C |
| R3021 |
T10291 |
T10269 |
punct |
.,perturbed |
| R3022 |
T10293 |
T10294 |
det |
The,pattern |
| R3023 |
T10294 |
T10296 |
nsubjpass |
pattern,altered |
| R3024 |
T10295 |
T10294 |
compound |
H4K20me3,pattern |
| R3025 |
T10297 |
T10296 |
auxpass |
was,altered |
| R3026 |
T10298 |
T10299 |
advmod |
even,more |
| R3027 |
T10299 |
T10300 |
advmod |
more,severely |
| R3028 |
T10300 |
T10296 |
advmod |
severely,altered |
| R3029 |
T10301 |
T10296 |
punct |
", ",altered |
| R3030 |
T10302 |
T10296 |
advcl |
showing,altered |
| R3031 |
T10303 |
T10304 |
preconj |
both,loss |
| R3032 |
T10304 |
T10302 |
dobj |
loss,showing |
| R3033 |
T10305 |
T10304 |
det |
a,loss |
| R3034 |
T10306 |
T10304 |
prep |
of,loss |
| R3035 |
T10307 |
T10308 |
det |
the,dots |
| R3036 |
T10308 |
T10306 |
pobj |
dots,of |
| R3037 |
T10309 |
T10308 |
amod |
typical,dots |
| R3038 |
T10310 |
T10308 |
acl |
revealed,dots |
| R3039 |
T10311 |
T10310 |
prep |
in,revealed |
| R3040 |
T10312 |
T10313 |
compound |
control,cells |
| R3041 |
T10313 |
T10311 |
pobj |
cells,in |
| R3042 |
T10314 |
T10304 |
cc |
and,loss |
| R3043 |
T10315 |
T10316 |
det |
a,reduction |
| R3044 |
T10316 |
T10304 |
conj |
reduction,loss |
| R3045 |
T10317 |
T10316 |
prep |
in,reduction |
| R3046 |
T10318 |
T10319 |
compound |
signal,intensity |
| R3047 |
T10319 |
T10317 |
pobj |
intensity,in |
| R3048 |
T10320 |
T10321 |
punct |
(,7D |
| R3049 |
T10321 |
T10296 |
parataxis |
7D,altered |
| R3050 |
T10322 |
T10321 |
compound |
Figure,7D |
| R3051 |
T10323 |
T10321 |
punct |
),7D |
| R3052 |
T10324 |
T10296 |
punct |
.,altered |
| R3053 |
T10326 |
T10327 |
advcl |
Consistent,detected |
| R3054 |
T10328 |
T10326 |
prep |
with,Consistent |
| R3055 |
T10329 |
T10330 |
poss |
our,experiments |
| R3056 |
T10330 |
T10328 |
pobj |
experiments,with |
| R3057 |
T10331 |
T10330 |
compound |
ChIP,experiments |
| R3080 |
T13122 |
T13123 |
advmod |
Here,provide |
| R3081 |
T13124 |
T13123 |
punct |
", ",provide |
| R3082 |
T13125 |
T13123 |
nsubj |
we,provide |
| R3083 |
T13126 |
T13123 |
dobj |
evidence,provide |
| R3084 |
T13127 |
T13128 |
mark |
that,has |
| R3085 |
T13128 |
T13126 |
acl |
has,evidence |
| R3086 |
T13129 |
T13128 |
nsubj |
p150CAF,has |
| R3087 |
T13130 |
T13129 |
punct |
-,p150CAF |
| R3088 |
T13131 |
T13129 |
nummod |
1,p150CAF |
| R3089 |
T13132 |
T13133 |
det |
a,function |
| R3090 |
T13133 |
T13128 |
dobj |
function,has |
| R3091 |
T13134 |
T13133 |
amod |
crucial,function |
| R3092 |
T13135 |
T13128 |
prep |
during,has |
| R3093 |
T13136 |
T13137 |
nmod |
mouse,embryogenesis |
| R3094 |
T13137 |
T13135 |
pobj |
embryogenesis,during |
| R3095 |
T13138 |
T13137 |
amod |
early,embryogenesis |
| R3096 |
T13139 |
T13135 |
cc |
and,during |
| R3097 |
T13140 |
T13135 |
conj |
in,during |
| R3098 |
T13141 |
T13142 |
compound |
ES,cells |
| R3099 |
T13142 |
T13140 |
pobj |
cells,in |
| R3100 |
T13143 |
T13123 |
punct |
.,provide |
| R3101 |
T13145 |
T13146 |
amod |
Previous,studies |
| R3102 |
T13146 |
T13147 |
nsubj |
studies,showed |
| R3103 |
T13148 |
T13149 |
mark |
that,is |
| R3104 |
T13149 |
T13147 |
ccomp |
is,showed |
| R3105 |
T13150 |
T13149 |
nsubj |
CAF,is |
| R3106 |
T13151 |
T13150 |
punct |
-,CAF |
| R3107 |
T13152 |
T13150 |
nummod |
1,CAF |
| R3108 |
T13153 |
T13149 |
acomp |
essential,is |
| R3109 |
T13154 |
T13153 |
prep |
for,essential |
| R3110 |
T13155 |
T13156 |
det |
the,progression |
| R3111 |
T13156 |
T13154 |
pobj |
progression,for |
| R3112 |
T13157 |
T13156 |
prep |
of,progression |
| R3113 |
T13158 |
T13159 |
compound |
DNA,replication |
| R3114 |
T13159 |
T13157 |
pobj |
replication,of |
| R3115 |
T13160 |
T13149 |
prep |
in,is |
| R3116 |
T13161 |
T13160 |
pobj |
vertebrates,in |
| R3117 |
T13162 |
T13147 |
punct |
.,showed |
| R3118 |
T13164 |
T13165 |
prep |
In,required |
| R3119 |
T13166 |
T13167 |
compound |
Xenopus,laevis |
| R3120 |
T13167 |
T13164 |
pobj |
laevis,In |
| R3121 |
T13168 |
T13165 |
punct |
", ",required |
| R3122 |
T13169 |
T13170 |
nmod |
p150CAF,function |
| R3123 |
T13170 |
T13165 |
nsubjpass |
function,required |
| R3124 |
T13171 |
T13169 |
punct |
-,p150CAF |
| R3125 |
T13172 |
T13169 |
nummod |
1,p150CAF |
| R3126 |
T13173 |
T13165 |
auxpass |
is,required |
| R3127 |
T13174 |
T13165 |
prep |
for,required |
| R3128 |
T13175 |
T13176 |
det |
the,divisions |
| R3129 |
T13176 |
T13174 |
pobj |
divisions,for |
| R3130 |
T13177 |
T13176 |
amod |
rapid,divisions |
| R3131 |
T13178 |
T13176 |
compound |
cell,divisions |
| R3132 |
T13179 |
T13180 |
dep |
that,occur |
| R3133 |
T13180 |
T13176 |
relcl |
occur,divisions |
| R3134 |
T13181 |
T13180 |
prep |
during,occur |
| R3135 |
T13182 |
T13183 |
amod |
early,development |
| R3136 |
T13183 |
T13181 |
pobj |
development,during |
| R3137 |
T13184 |
T13185 |
punct |
[,33 |
| R3138 |
T13185 |
T13165 |
parataxis |
33,required |
| R3139 |
T13186 |
T13185 |
punct |
],33 |
| R3140 |
T13187 |
T13165 |
punct |
.,required |
| R3141 |
T13189 |
T13190 |
advmod |
Similarly,is |
| R3142 |
T13191 |
T13190 |
punct |
", ",is |
| R3143 |
T13192 |
T13190 |
nsubj |
CAF,is |
| R3144 |
T13193 |
T13192 |
punct |
-,CAF |
| R3145 |
T13194 |
T13192 |
nummod |
1,CAF |
| R3146 |
T13195 |
T13190 |
acomp |
essential,is |
| R3147 |
T13196 |
T13190 |
prep |
in,is |
| R3148 |
T13197 |
T13198 |
amod |
mammalian,lines |
| R3149 |
T13198 |
T13196 |
pobj |
lines,in |
| R3150 |
T13199 |
T13198 |
compound |
cell,lines |
| R3151 |
T13200 |
T13190 |
prep |
for,is |
| R3152 |
T13201 |
T13202 |
det |
the,progression |
| R3153 |
T13202 |
T13200 |
pobj |
progression,for |
| R3154 |
T13203 |
T13202 |
prep |
of,progression |
| R3155 |
T13204 |
T13205 |
compound |
DNA,replication |
| R3156 |
T13205 |
T13203 |
pobj |
replication,of |
| R3157 |
T13206 |
T13207 |
punct |
[,34 |
| R3158 |
T13207 |
T13190 |
parataxis |
34,is |
| R3159 |
T13208 |
T13207 |
nummod |
16,34 |
| R3160 |
T13209 |
T13207 |
punct |
",",34 |
| R3161 |
T13210 |
T13207 |
nummod |
23,34 |
| R3162 |
T13211 |
T13207 |
punct |
",",34 |
| R3163 |
T13212 |
T13207 |
nummod |
24,34 |
| R3164 |
T13213 |
T13207 |
punct |
",",34 |
| R3165 |
T13214 |
T13207 |
punct |
],34 |
| R3166 |
T13215 |
T13190 |
punct |
.,is |
| R3167 |
T13217 |
T13218 |
poss |
Our,findings |
| R3168 |
T13218 |
T13219 |
nsubj |
findings,reveal |
| R3169 |
T13220 |
T13221 |
det |
a,role |
| R3170 |
T13221 |
T13219 |
dobj |
role,reveal |
| R3171 |
T13222 |
T13221 |
prep |
for,role |
| R3172 |
T13223 |
T13222 |
pobj |
CAF,for |
| R3173 |
T13224 |
T13223 |
punct |
-,CAF |
| R3174 |
T13225 |
T13223 |
nummod |
1,CAF |
| R3175 |
T13226 |
T13221 |
prep |
in,role |
| R3176 |
T13227 |
T13228 |
det |
the,organization |
| R3177 |
T13228 |
T13226 |
pobj |
organization,in |
| R3178 |
T13229 |
T13228 |
amod |
nuclear,organization |
| R3179 |
T13230 |
T13228 |
prep |
of,organization |
| R3180 |
T13231 |
T13232 |
compound |
heterochromatin,domains |
| R3181 |
T13232 |
T13230 |
pobj |
domains,of |
| R3182 |
T13233 |
T13228 |
prep |
during,organization |
| R3183 |
T13234 |
T13235 |
amod |
early,development |
| R3184 |
T13235 |
T13233 |
pobj |
development,during |
| R3185 |
T13236 |
T13233 |
cc |
and,during |
| R3186 |
T13237 |
T13233 |
conj |
in,during |
| R3187 |
T13238 |
T13239 |
compound |
ES,cells |
| R3188 |
T13239 |
T13237 |
pobj |
cells,in |
| R3189 |
T13240 |
T13219 |
punct |
.,reveal |
| R3190 |
T13242 |
T13243 |
nsubj |
We,show |
| R3191 |
T13244 |
T13245 |
mark |
that,observed |
| R3192 |
T13245 |
T13243 |
ccomp |
observed,show |
| R3193 |
T13246 |
T13245 |
prep |
in,observed |
| R3194 |
T13247 |
T13248 |
npadvmod |
p150CAF,depleted |
| R3195 |
T13248 |
T13252 |
amod |
depleted,cells |
| R3196 |
T13249 |
T13247 |
punct |
-,p150CAF |
| R3197 |
T13250 |
T13247 |
nummod |
1,p150CAF |
| R3198 |
T13251 |
T13248 |
punct |
-,depleted |
| R3199 |
T13252 |
T13246 |
pobj |
cells,in |
| R3200 |
T13253 |
T13252 |
compound |
ES,cells |
| R3201 |
T13254 |
T13245 |
punct |
", ",observed |
| R3202 |
T13255 |
T13256 |
mark |
while,persists |
| R3203 |
T13256 |
T13245 |
advcl |
persists,observed |
| R3204 |
T13257 |
T13258 |
compound |
DNA,replication |
| R3205 |
T13258 |
T13256 |
nsubj |
replication,persists |
| R3206 |
T13259 |
T13256 |
advmod |
initially,persists |
| R3207 |
T13260 |
T13256 |
prep |
without,persists |
| R3208 |
T13261 |
T13262 |
amod |
significant,perturbation |
| R3209 |
T13262 |
T13260 |
pobj |
perturbation,without |
| R3210 |
T13263 |
T13262 |
prep |
in,perturbation |
| R3211 |
T13264 |
T13265 |
amod |
nucleosomal,organization |
| R3212 |
T13265 |
T13263 |
pobj |
organization,in |
| R3213 |
T13266 |
T13245 |
punct |
", ",observed |
| R3214 |
T13267 |
T13268 |
amod |
severe,defects |
| R3215 |
T13268 |
T13245 |
nsubjpass |
defects,observed |
| R3216 |
T13269 |
T13268 |
compound |
heterochromatin,defects |
| R3217 |
T13270 |
T13268 |
compound |
organization,defects |
| R3218 |
T13271 |
T13245 |
aux |
can,observed |
| R3219 |
T13272 |
T13245 |
auxpass |
be,observed |
| R3220 |
T13273 |
T13243 |
punct |
.,show |
| R3221 |
T13275 |
T13276 |
nsubj |
Loss,affect |
| R3222 |
T13277 |
T13275 |
prep |
of,Loss |
| R3223 |
T13278 |
T13277 |
pobj |
p150CAF,of |
| R3224 |
T13279 |
T13278 |
punct |
-,p150CAF |
| R3225 |
T13280 |
T13278 |
nummod |
1,p150CAF |
| R3226 |
T13281 |
T13276 |
aux |
did,affect |
| R3227 |
T13282 |
T13276 |
neg |
not,affect |
| R3228 |
T13283 |
T13284 |
compound |
PML,bodies |
| R3229 |
T13284 |
T13276 |
dobj |
bodies,affect |
| R3230 |
T13285 |
T13276 |
prep |
in,affect |
| R3231 |
T13286 |
T13287 |
compound |
ES,nuclei |
| R3232 |
T13287 |
T13285 |
pobj |
nuclei,in |
| R3233 |
T13288 |
T13287 |
compound |
cell,nuclei |
| R3234 |
T13289 |
T13276 |
punct |
", ",affect |
| R3235 |
T13290 |
T13276 |
advcl |
showing,affect |
| R3236 |
T13291 |
T13292 |
mark |
that,altered |
| R3237 |
T13292 |
T13290 |
ccomp |
altered,showing |
| R3238 |
T13293 |
T13294 |
amod |
nuclear,architecture |
| R3239 |
T13294 |
T13292 |
nsubjpass |
architecture,altered |
| R3240 |
T13295 |
T13292 |
auxpass |
is,altered |
| R3241 |
T13296 |
T13292 |
neg |
not,altered |
| R3242 |
T13297 |
T13292 |
advmod |
generally,altered |
| R3243 |
T13298 |
T13276 |
punct |
.,affect |
| R3244 |
T13300 |
T13301 |
advmod |
Ultimately,results |
| R3245 |
T13302 |
T13301 |
punct |
", ",results |
| R3246 |
T13303 |
T13304 |
nmod |
p150CAF,depletion |
| R3247 |
T13304 |
T13301 |
nsubj |
depletion,results |
| R3248 |
T13305 |
T13303 |
punct |
-,p150CAF |
| R3249 |
T13306 |
T13303 |
nummod |
1,p150CAF |
| R3250 |
T13307 |
T13301 |
prep |
in,results |
| R3251 |
T13308 |
T13309 |
det |
the,arrest |
| R3252 |
T13309 |
T13307 |
pobj |
arrest,in |
| R3253 |
T13310 |
T13309 |
prep |
of,arrest |
| R3254 |
T13311 |
T13312 |
compound |
ES,cell |
| R3255 |
T13312 |
T13313 |
compound |
cell,division |
| R3256 |
T13313 |
T13310 |
pobj |
division,of |
| R3257 |
T13314 |
T13309 |
cc |
and,arrest |
| R3258 |
T13315 |
T13316 |
compound |
cell,death |
| R3259 |
T13316 |
T13309 |
conj |
death,arrest |
| R3260 |
T13317 |
T13301 |
punct |
.,results |
| R3261 |
T13319 |
T13320 |
prep |
Given,is |
| R3262 |
T13321 |
T13322 |
det |
the,defects |
| R3263 |
T13322 |
T13319 |
pobj |
defects,Given |
| R3264 |
T13323 |
T13322 |
amod |
major,defects |
| R3265 |
T13324 |
T13322 |
acl |
observed,defects |
| R3266 |
T13325 |
T13324 |
prep |
in,observed |
| R3267 |
T13326 |
T13327 |
compound |
heterochromatin,organization |
| R3268 |
T13327 |
T13325 |
pobj |
organization,in |
| R3269 |
T13328 |
T13320 |
punct |
", ",is |
| R3270 |
T13329 |
T13320 |
nsubj |
it,is |
| R3271 |
T13330 |
T13320 |
acomp |
tempting,is |
| R3272 |
T13331 |
T13332 |
aux |
to,speculate |
| R3273 |
T13332 |
T13320 |
xcomp |
speculate,is |
| R3274 |
T13333 |
T13334 |
mark |
that,cause |
| R3275 |
T13334 |
T13332 |
ccomp |
cause,speculate |
| R3276 |
T13335 |
T13336 |
det |
these,defects |
| R3277 |
T13336 |
T13334 |
nsubj |
defects,cause |
| R3278 |
T13337 |
T13338 |
det |
the,arrest |
| R3279 |
T13338 |
T13334 |
dobj |
arrest,cause |
| R3280 |
T13339 |
T13338 |
amod |
developmental,arrest |
| R3281 |
T13340 |
T13338 |
prep |
in,arrest |
| R3282 |
T13341 |
T13342 |
det |
the,embryos |
| R3283 |
T13342 |
T13340 |
pobj |
embryos,in |
| R3284 |
T13343 |
T13338 |
cc |
and,arrest |
| R3285 |
T13344 |
T13338 |
conj |
death,arrest |
| R3286 |
T13345 |
T13344 |
prep |
in,death |
| R3287 |
T13346 |
T13347 |
compound |
ES,cells |
| R3288 |
T13347 |
T13345 |
pobj |
cells,in |
| R3289 |
T13348 |
T13320 |
punct |
.,is |
| R3290 |
T13350 |
T13351 |
det |
The,role |
| R3291 |
T13351 |
T13352 |
nsubj |
role,includes |
| R3292 |
T13353 |
T13351 |
prep |
of,role |
| R3293 |
T13354 |
T13353 |
pobj |
CAF,of |
| R3294 |
T13355 |
T13354 |
punct |
-,CAF |
| R3295 |
T13356 |
T13354 |
nummod |
1,CAF |
| R3296 |
T13357 |
T13351 |
prep |
in,role |
| R3297 |
T13358 |
T13359 |
det |
the,organization |
| R3298 |
T13359 |
T13357 |
pobj |
organization,in |
| R3299 |
T13360 |
T13359 |
amod |
nuclear,organization |
| R3300 |
T13361 |
T13359 |
prep |
of,organization |
| R3301 |
T13362 |
T13361 |
pobj |
heterochromatin,of |
| R3302 |
T13363 |
T13364 |
amod |
spatial,localization |
| R3303 |
T13364 |
T13352 |
dobj |
localization,includes |
| R3304 |
T13365 |
T13364 |
punct |
", ",localization |
| R3305 |
T13366 |
T13364 |
conj |
condensation,localization |
| R3306 |
T13367 |
T13366 |
punct |
", ",condensation |
| R3307 |
T13368 |
T13366 |
cc |
and,condensation |
| R3308 |
T13369 |
T13366 |
conj |
clustering,condensation |
| R3309 |
T13370 |
T13369 |
prep |
of,clustering |
| R3310 |
T13371 |
T13372 |
amod |
pericentric,domains |
| R3311 |
T13372 |
T13370 |
pobj |
domains,of |
| R3312 |
T13373 |
T13352 |
punct |
.,includes |
| R3313 |
T13375 |
T13376 |
det |
This,function |
| R3314 |
T13376 |
T13378 |
nsubjpass |
function,revealed |
| R3315 |
T13377 |
T13376 |
amod |
important,function |
| R3316 |
T13379 |
T13376 |
prep |
of,function |
| R3317 |
T13380 |
T13379 |
pobj |
CAF,of |
| R3318 |
T13381 |
T13380 |
punct |
-,CAF |
| R3319 |
T13382 |
T13380 |
nummod |
1,CAF |
| R3320 |
T13383 |
T13378 |
auxpass |
was,revealed |
| R3321 |
T13384 |
T13378 |
neg |
not,revealed |
| R3322 |
T13385 |
T13378 |
prep |
in,revealed |
| R3323 |
T13386 |
T13387 |
amod |
primary,MEFs |
| R3324 |
T13387 |
T13385 |
pobj |
MEFs,in |
| R3325 |
T13388 |
T13387 |
punct |
", ",MEFs |
| R3326 |
T13389 |
T13390 |
compound |
3T3,cells |
| R3327 |
T13390 |
T13387 |
conj |
cells,MEFs |
| R3328 |
T13391 |
T13390 |
punct |
", ",cells |
| R3329 |
T13392 |
T13390 |
cc |
or,cells |
| R3330 |
T13393 |
T13394 |
amod |
human,lines |
| R3331 |
T13394 |
T13390 |
conj |
lines,cells |
| R3332 |
T13395 |
T13394 |
compound |
cell,lines |
| R3333 |
T13396 |
T13378 |
punct |
", ",revealed |
| R3334 |
T13397 |
T13378 |
advcl |
suggesting,revealed |
| R3335 |
T13398 |
T13399 |
mark |
that,is |
| R3336 |
T13399 |
T13397 |
ccomp |
is,suggesting |
| R3337 |
T13400 |
T13399 |
nsubj |
it,is |
| R3338 |
T13401 |
T13399 |
acomp |
specific,is |
| R3339 |
T13402 |
T13401 |
prep |
of,specific |
| R3340 |
T13403 |
T13404 |
amod |
pluripotent,cells |
| R3341 |
T13404 |
T13402 |
pobj |
cells,of |
| R3342 |
T13405 |
T13404 |
amod |
embryonic,cells |
| R3343 |
T13406 |
T13378 |
punct |
.,revealed |
| R3344 |
T13408 |
T13409 |
advmod |
Alternatively,represent |
| R3345 |
T13410 |
T13409 |
punct |
", ",represent |
| R3346 |
T13411 |
T13412 |
amod |
early,embryos |
| R3347 |
T13412 |
T13409 |
nsubj |
embryos,represent |
| R3348 |
T13413 |
T13412 |
cc |
and,embryos |
| R3349 |
T13414 |
T13415 |
compound |
ES,cells |
| R3350 |
T13415 |
T13412 |
conj |
cells,embryos |
| R3351 |
T13416 |
T13412 |
punct |
", ",embryos |
| R3352 |
T13417 |
T13418 |
poss |
whose,genome |
| R3353 |
T13418 |
T13419 |
dep |
genome,is |
| R3354 |
T13419 |
T13412 |
relcl |
is,embryos |
| R3355 |
T13420 |
T13421 |
advmod |
more,plastic |
| R3356 |
T13421 |
T13419 |
acomp |
plastic,is |
| R3357 |
T13422 |
T13421 |
prep |
than,plastic |
| R3358 |
T13423 |
T13424 |
amod |
somatic,cells |
| R3359 |
T13424 |
T13422 |
pobj |
cells,than |
| R3360 |
T13425 |
T13409 |
punct |
", ",represent |
| R3361 |
T13426 |
T13409 |
aux |
might,represent |
| R3362 |
T13427 |
T13428 |
det |
a,context |
| R3363 |
T13428 |
T13409 |
dobj |
context,represent |
| R3364 |
T13429 |
T13430 |
advmod |
particularly,sensitive |
| R3365 |
T13430 |
T13428 |
amod |
sensitive,context |
| R3366 |
T13431 |
T13432 |
prep |
in,exacerbated |
| R3367 |
T13432 |
T13428 |
relcl |
exacerbated,context |
| R3368 |
T13433 |
T13431 |
pobj |
which,in |
| R3369 |
T13434 |
T13435 |
det |
the,importance |
| R3370 |
T13435 |
T13432 |
nsubjpass |
importance,exacerbated |
| R3371 |
T13436 |
T13435 |
prep |
of,importance |
| R3372 |
T13437 |
T13436 |
pobj |
CAF,of |
| R3373 |
T13438 |
T13437 |
punct |
-,CAF |
| R3374 |
T13439 |
T13437 |
nummod |
1,CAF |
| R3375 |
T13440 |
T13435 |
prep |
in,importance |
| R3376 |
T13441 |
T13442 |
compound |
heterochromatin,organization |
| R3377 |
T13442 |
T13440 |
pobj |
organization,in |
| R3378 |
T13443 |
T13432 |
auxpass |
is,exacerbated |
| R3379 |
T13444 |
T13409 |
punct |
.,represent |
| R3380 |
T13446 |
T13447 |
prep |
In,are |
| R3381 |
T13448 |
T13449 |
compound |
ES,cells |
| R3382 |
T13449 |
T13446 |
pobj |
cells,In |
| R3383 |
T13450 |
T13447 |
punct |
", ",are |
| R3384 |
T13451 |
T13452 |
amod |
major,proteins |
| R3385 |
T13452 |
T13447 |
nsubj |
proteins,are |
| R3386 |
T13453 |
T13452 |
amod |
architectural,proteins |
| R3387 |
T13454 |
T13452 |
compound |
chromatin,proteins |
| R3388 |
T13455 |
T13447 |
acomp |
hyperdynamic,are |
| R3389 |
T13456 |
T13447 |
cc |
and,are |
| R3390 |
T13457 |
T13447 |
conj |
bind,are |
| R3391 |
T13458 |
T13459 |
advmod |
relatively,loosely |
| R3392 |
T13459 |
T13457 |
advmod |
loosely,bind |
| R3393 |
T13460 |
T13457 |
prep |
to,bind |
| R3394 |
T13461 |
T13460 |
pobj |
chromatin,to |
| R3395 |
T13462 |
T13463 |
punct |
[,35 |
| R3396 |
T13463 |
T13457 |
parataxis |
35,bind |
| R3397 |
T13464 |
T13463 |
punct |
],35 |
| R3398 |
T13465 |
T13447 |
punct |
.,are |
| R3399 |
T13467 |
T13468 |
prep |
In,show |
| R3400 |
T13469 |
T13470 |
det |
this,context |
| R3401 |
T13470 |
T13467 |
pobj |
context,In |
| R3402 |
T13471 |
T13470 |
amod |
cellular,context |
| R3403 |
T13472 |
T13468 |
punct |
", ",show |
| R3404 |
T13473 |
T13474 |
poss |
our,findings |
| R3405 |
T13474 |
T13468 |
nsubj |
findings,show |
| R3406 |
T13475 |
T13476 |
mark |
that,relies |
| R3407 |
T13476 |
T13468 |
ccomp |
relies,show |
| R3408 |
T13477 |
T13478 |
amod |
proper,architecture |
| R3409 |
T13478 |
T13476 |
nsubj |
architecture,relies |
| R3410 |
T13479 |
T13478 |
nmod |
heterochromatin,architecture |
| R3411 |
T13480 |
T13478 |
amod |
nuclear,architecture |
| R3412 |
T13481 |
T13476 |
prep |
on,relies |
| R3413 |
T13482 |
T13483 |
nmod |
CAF,function |
| R3414 |
T13483 |
T13481 |
pobj |
function,on |
| R3415 |
T13484 |
T13482 |
punct |
-,CAF |
| R3416 |
T13485 |
T13482 |
nummod |
1,CAF |
| R3417 |
T13486 |
T13468 |
punct |
.,show |
| R3418 |
T13488 |
T13489 |
prep |
In,be |
| R3419 |
T13490 |
T13488 |
pobj |
contrast,In |
| R3420 |
T13491 |
T13489 |
punct |
", ",be |
| R3421 |
T13492 |
T13489 |
prep |
in,be |
| R3422 |
T13493 |
T13494 |
amod |
undifferentiated,cells |
| R3423 |
T13494 |
T13492 |
pobj |
cells,in |
| R3424 |
T13495 |
T13496 |
dep |
that,committed |
| R3425 |
T13496 |
T13494 |
relcl |
committed,cells |
| R3426 |
T13497 |
T13496 |
auxpass |
are,committed |
| R3427 |
T13498 |
T13496 |
advmod |
already,committed |
| R3428 |
T13499 |
T13496 |
dep |
lineage,committed |
| R3429 |
T13500 |
T13494 |
punct |
(,cells |
| R3430 |
T13501 |
T13502 |
amod |
such,as |
| R3431 |
T13502 |
T13494 |
prep |
as,cells |
| R3432 |
T13503 |
T13502 |
pobj |
MEFs,as |
| R3433 |
T13504 |
T13489 |
punct |
),be |
| R3434 |
T13505 |
T13506 |
compound |
genome,architecture |
| R3435 |
T13506 |
T13489 |
nsubj |
architecture,be |
| R3436 |
T13507 |
T13489 |
aux |
might,be |
| R3437 |
T13508 |
T13509 |
advmod |
more,stable |
| R3438 |
T13509 |
T13489 |
acomp |
stable,be |
| R3439 |
T13510 |
T13509 |
prep |
than,stable |
| R3440 |
T13511 |
T13510 |
prep |
in,than |
| R3441 |
T13512 |
T13513 |
compound |
ES,cells |
| R3442 |
T13513 |
T13511 |
pobj |
cells,in |
| R3443 |
T13514 |
T13489 |
cc |
and,be |
| R3444 |
T13515 |
T13516 |
advmod |
thus,disrupted |
| R3445 |
T13516 |
T13489 |
conj |
disrupted,be |
| R3446 |
T13517 |
T13516 |
aux |
can,disrupted |
| R3447 |
T13518 |
T13516 |
neg |
not,disrupted |
| R3448 |
T13519 |
T13516 |
auxpass |
be,disrupted |
| R3449 |
T13520 |
T13516 |
agent |
by,disrupted |
| R3450 |
T13521 |
T13522 |
nmod |
CAF,depletion |
| R3451 |
T13522 |
T13520 |
pobj |
depletion,by |
| R3452 |
T13523 |
T13521 |
punct |
-,CAF |
| R3453 |
T13524 |
T13521 |
nummod |
1,CAF |
| R3454 |
T13525 |
T13489 |
punct |
.,be |
| R3455 |
T13527 |
T13528 |
det |
This,function |
| R3456 |
T13528 |
T13530 |
nsubjpass |
function,conserved |
| R3457 |
T13529 |
T13528 |
amod |
important,function |
| R3458 |
T13531 |
T13528 |
prep |
of,function |
| R3459 |
T13532 |
T13531 |
pobj |
CAF,of |
| R3460 |
T13533 |
T13532 |
punct |
-,CAF |
| R3461 |
T13534 |
T13532 |
nummod |
1,CAF |
| R3462 |
T13535 |
T13528 |
prep |
in,function |
| R3463 |
T13536 |
T13537 |
amod |
pluripotent,cells |
| R3464 |
T13537 |
T13535 |
pobj |
cells,in |
| R3465 |
T13538 |
T13537 |
amod |
embryonic,cells |
| R3466 |
T13539 |
T13530 |
aux |
could,conserved |
| R3467 |
T13540 |
T13530 |
auxpass |
be,conserved |
| R3468 |
T13541 |
T13530 |
advmod |
partially,conserved |
| R3469 |
T13542 |
T13530 |
prep |
during,conserved |
| R3470 |
T13543 |
T13542 |
pobj |
evolution,during |
| R3471 |
T13544 |
T13530 |
punct |
.,conserved |
| R3472 |
T13546 |
T13547 |
advmod |
Indeed,associated |
| R3473 |
T13548 |
T13547 |
punct |
", ",associated |
| R3474 |
T13549 |
T13547 |
prep |
in,associated |
| R3475 |
T13550 |
T13551 |
compound |
Arabidopsis,thaliana |
| R3476 |
T13551 |
T13549 |
pobj |
thaliana,in |
| R3477 |
T13552 |
T13551 |
punct |
", ",thaliana |
| R3478 |
T13553 |
T13554 |
prep |
in,is |
| R3479 |
T13554 |
T13551 |
relcl |
is,thaliana |
| R3480 |
T13555 |
T13553 |
pobj |
which,in |
| R3481 |
T13556 |
T13554 |
nsubj |
CAF,is |
| R3482 |
T13557 |
T13556 |
punct |
-,CAF |
| R3483 |
T13558 |
T13556 |
nummod |
1,CAF |
| R3484 |
T13559 |
T13554 |
neg |
not,is |
| R3485 |
T13560 |
T13554 |
acomp |
essential,is |
| R3486 |
T13561 |
T13560 |
prep |
for,essential |
| R3487 |
T13562 |
T13561 |
pobj |
viability,for |
| R3488 |
T13563 |
T13564 |
punct |
[,36 |
| R3489 |
T13564 |
T13554 |
parataxis |
36,is |
| R3490 |
T13565 |
T13564 |
punct |
],36 |
| R3491 |
T13566 |
T13547 |
punct |
", ",associated |
| R3492 |
T13567 |
T13547 |
nsubjpass |
loss,associated |
| R3493 |
T13568 |
T13567 |
prep |
of,loss |
| R3494 |
T13569 |
T13568 |
pobj |
CAF,of |
| R3495 |
T13570 |
T13569 |
punct |
-,CAF |
| R3496 |
T13571 |
T13569 |
nummod |
1,CAF |
| R3497 |
T13572 |
T13547 |
auxpass |
is,associated |
| R3498 |
T13573 |
T13547 |
prep |
with,associated |
| R3499 |
T13574 |
T13575 |
det |
a,alteration |
| R3500 |
T13575 |
T13573 |
pobj |
alteration,with |
| R3501 |
T13576 |
T13575 |
amod |
mild,alteration |
| R3502 |
T13577 |
T13575 |
prep |
in,alteration |
| R3503 |
T13578 |
T13579 |
compound |
chromocenter,size |
| R3504 |
T13579 |
T13577 |
pobj |
size,in |
| R3505 |
T13580 |
T13581 |
punct |
[,37 |
| R3506 |
T13581 |
T13547 |
parataxis |
37,associated |
| R3507 |
T13582 |
T13581 |
punct |
],37 |
| R3508 |
T13583 |
T13547 |
punct |
.,associated |
| R3509 |
T13585 |
T13586 |
det |
This,phenotype |
| R3510 |
T13586 |
T13587 |
nsubj |
phenotype,is |
| R3511 |
T13588 |
T13587 |
advmod |
somehow,is |
| R3512 |
T13589 |
T13587 |
acomp |
reminiscent,is |
| R3513 |
T13590 |
T13589 |
prep |
of,reminiscent |
| R3514 |
T13591 |
T13590 |
pobj |
loss,of |
| R3515 |
T13592 |
T13591 |
prep |
of,loss |
| R3516 |
T13593 |
T13594 |
npadvmod |
CAF,mediated |
| R3517 |
T13594 |
T13598 |
amod |
mediated,defects |
| R3518 |
T13595 |
T13593 |
punct |
-,CAF |
| R3519 |
T13596 |
T13593 |
nummod |
1,CAF |
| R3520 |
T13597 |
T13594 |
punct |
-,mediated |
| R3521 |
T13598 |
T13592 |
pobj |
defects,of |
| R3522 |
T13599 |
T13598 |
prep |
in,defects |
| R3523 |
T13600 |
T13601 |
compound |
heterochromatin,organization |
| R3524 |
T13601 |
T13599 |
pobj |
organization,in |
| R3525 |
T13602 |
T13591 |
prep |
in,loss |
| R3526 |
T13603 |
T13604 |
amod |
early,embryos |
| R3527 |
T13604 |
T13602 |
pobj |
embryos,in |
| R3528 |
T13605 |
T13604 |
compound |
mouse,embryos |
| R3529 |
T13606 |
T13587 |
punct |
.,is |
| R3530 |
T13608 |
T13609 |
prep |
In,show |
| R3531 |
T13610 |
T13611 |
compound |
mouse,cells |
| R3532 |
T13611 |
T13608 |
pobj |
cells,In |
| R3533 |
T13612 |
T13611 |
compound |
ES,cells |
| R3534 |
T13613 |
T13609 |
punct |
", ",show |
| R3535 |
T13614 |
T13609 |
nsubj |
we,show |
| R3536 |
T13615 |
T13616 |
mark |
that,required |
| R3537 |
T13616 |
T13609 |
ccomp |
required,show |
| R3538 |
T13617 |
T13616 |
nsubjpass |
CAF,required |
| R3539 |
T13618 |
T13617 |
punct |
-,CAF |
| R3540 |
T13619 |
T13617 |
nummod |
1,CAF |
| R3541 |
T13620 |
T13616 |
auxpass |
is,required |
| R3542 |
T13621 |
T13616 |
advmod |
also,required |
| R3543 |
T13622 |
T13616 |
prep |
for,required |
| R3544 |
T13623 |
T13624 |
amod |
regular,levels |
| R3545 |
T13624 |
T13622 |
pobj |
levels,for |
| R3546 |
T13625 |
T13624 |
prep |
of,levels |
| R3547 |
T13626 |
T13625 |
pobj |
H4K20me3,of |
| R3548 |
T13627 |
T13624 |
prep |
at,levels |
| R3549 |
T13628 |
T13629 |
amod |
pericentric,repeats |
| R3550 |
T13629 |
T13627 |
pobj |
repeats,at |
| R3551 |
T13630 |
T13627 |
punct |
", ",at |
| R3552 |
T13631 |
T13627 |
cc |
but,at |
| R3553 |
T13632 |
T13631 |
neg |
not,but |
| R3554 |
T13633 |
T13627 |
conj |
at,at |
| R3555 |
T13634 |
T13635 |
compound |
IAP,elements |
| R3556 |
T13635 |
T13633 |
pobj |
elements,at |
| R3557 |
T13636 |
T13635 |
punct |
", ",elements |
| R3558 |
T13637 |
T13638 |
dep |
which,are |
| R3559 |
T13638 |
T13635 |
relcl |
are,elements |
| R3560 |
T13639 |
T13640 |
amod |
repeated,sequences |
| R3561 |
T13640 |
T13638 |
attr |
sequences,are |
| R3562 |
T13641 |
T13640 |
acl |
spread,sequences |
| R3563 |
T13642 |
T13643 |
advmod |
all,over |
| R3564 |
T13643 |
T13641 |
prep |
over,spread |
| R3565 |
T13644 |
T13645 |
det |
the,genome |
| R3566 |
T13645 |
T13643 |
pobj |
genome,over |
| R3567 |
T13646 |
T13645 |
compound |
mouse,genome |
| R3568 |
T13647 |
T13609 |
punct |
.,show |
| R3569 |
T13649 |
T13650 |
det |
These,data |
| R3570 |
T13650 |
T13651 |
nsubj |
data,suggest |
| R3571 |
T13652 |
T13653 |
mark |
that,coupled |
| R3572 |
T13653 |
T13651 |
ccomp |
coupled,suggest |
| R3573 |
T13654 |
T13655 |
amod |
proper,organization |
| R3574 |
T13655 |
T13653 |
nsubjpass |
organization,coupled |
| R3575 |
T13656 |
T13655 |
amod |
nuclear,organization |
| R3576 |
T13657 |
T13655 |
cc |
and,organization |
| R3577 |
T13658 |
T13659 |
amod |
epigenetic,marking |
| R3578 |
T13659 |
T13655 |
conj |
marking,organization |
| R3579 |
T13660 |
T13659 |
prep |
of,marking |
| R3580 |
T13661 |
T13662 |
amod |
pericentric,heterochromatin |
| R3581 |
T13662 |
T13660 |
pobj |
heterochromatin,of |
| R3582 |
T13663 |
T13653 |
auxpass |
are,coupled |
| R3583 |
T13664 |
T13653 |
prep |
in,coupled |
| R3584 |
T13665 |
T13666 |
compound |
ES,cells |
| R3585 |
T13666 |
T13664 |
pobj |
cells,in |
| R3586 |
T13667 |
T13651 |
punct |
.,suggest |
| R3587 |
T13669 |
T13670 |
advmod |
Alternatively,represent |
| R3588 |
T13671 |
T13670 |
punct |
", ",represent |
| R3589 |
T13672 |
T13673 |
nummod |
3,D |
| R3590 |
T13673 |
T13675 |
compound |
D,organization |
| R3591 |
T13674 |
T13673 |
punct |
-,D |
| R3592 |
T13675 |
T13670 |
nsubj |
organization,represent |
| R3593 |
T13676 |
T13675 |
prep |
of,organization |
| R3594 |
T13677 |
T13676 |
pobj |
heterochromatin,of |
| R3595 |
T13678 |
T13677 |
cc |
and,heterochromatin |
| R3596 |
T13679 |
T13680 |
amod |
epigenetic,marking |
| R3597 |
T13680 |
T13677 |
conj |
marking,heterochromatin |
| R3598 |
T13681 |
T13670 |
aux |
might,represent |
| R3599 |
T13682 |
T13683 |
nummod |
two,functions |
| R3600 |
T13683 |
T13670 |
dobj |
functions,represent |
| R3601 |
T13684 |
T13683 |
amod |
independent,functions |
| R3602 |
T13685 |
T13683 |
prep |
of,functions |
| R3603 |
T13686 |
T13685 |
pobj |
CAF,of |
| R3604 |
T13687 |
T13686 |
punct |
-,CAF |
| R3605 |
T13688 |
T13686 |
nummod |
1,CAF |
| R3606 |
T13689 |
T13670 |
punct |
.,represent |
| R3607 |
T13691 |
T13692 |
det |
The,requirement |
| R3608 |
T13692 |
T13694 |
nsubj |
requirement,reflect |
| R3609 |
T13693 |
T13692 |
amod |
variable,requirement |
| R3610 |
T13695 |
T13692 |
prep |
for,requirement |
| R3611 |
T13696 |
T13695 |
pobj |
CAF,for |
| R3612 |
T13697 |
T13696 |
punct |
-,CAF |
| R3613 |
T13698 |
T13696 |
nummod |
1,CAF |
| R3614 |
T13699 |
T13692 |
prep |
across,requirement |
| R3615 |
T13700 |
T13699 |
pobj |
species,across |
| R3616 |
T13701 |
T13694 |
aux |
might,reflect |
| R3617 |
T13702 |
T13703 |
det |
the,acquisition |
| R3618 |
T13703 |
T13694 |
dobj |
acquisition,reflect |
| R3619 |
T13704 |
T13703 |
prep |
of,acquisition |
| R3620 |
T13705 |
T13706 |
amod |
new,properties |
| R3621 |
T13706 |
T13704 |
pobj |
properties,of |
| R3622 |
T13707 |
T13706 |
acl |
affecting,properties |
| R3623 |
T13708 |
T13709 |
det |
the,function |
| R3624 |
T13709 |
T13707 |
dobj |
function,affecting |
| R3625 |
T13710 |
T13709 |
prep |
of,function |
| R3626 |
T13711 |
T13712 |
compound |
histone,H3 |
| R3627 |
T13712 |
T13713 |
compound |
H3,variants |
| R3628 |
T13713 |
T13710 |
pobj |
variants,of |
| R3629 |
T13714 |
T13703 |
prep |
during,acquisition |
| R3630 |
T13715 |
T13714 |
pobj |
evolution,during |
| R3631 |
T13716 |
T13715 |
prep |
of,evolution |
| R3632 |
T13717 |
T13716 |
pobj |
eukaryotes,of |
| R3633 |
T13718 |
T13694 |
punct |
.,reflect |
| R3634 |
T13720 |
T13721 |
nsubj |
CAF,is |
| R3635 |
T13722 |
T13720 |
punct |
-,CAF |
| R3636 |
T13723 |
T13720 |
nummod |
1,CAF |
| R3637 |
T13724 |
T13721 |
acomp |
essential,is |
| R3638 |
T13725 |
T13721 |
prep |
in,is |
| R3639 |
T13726 |
T13725 |
pobj |
mammals,in |
| R3640 |
T13727 |
T13721 |
cc |
but,is |
| R3641 |
T13728 |
T13721 |
conj |
dispensable,is |
| R3642 |
T13729 |
T13728 |
prep |
in,dispensable |
| R3643 |
T13730 |
T13731 |
compound |
Saccharomyces,cerevisiae |
| R3644 |
T13731 |
T13729 |
pobj |
cerevisiae,in |
| R3645 |
T13732 |
T13733 |
punct |
[,38 |
| R3646 |
T13733 |
T13728 |
parataxis |
38,dispensable |
| R3647 |
T13734 |
T13733 |
punct |
],38 |
| R3648 |
T13735 |
T13721 |
punct |
.,is |
| R3649 |
T13737 |
T13738 |
advmod |
Interestingly,contain |
| R3650 |
T13739 |
T13738 |
punct |
", ",contain |
| R3651 |
T13740 |
T13741 |
det |
the,genome |
| R3652 |
T13741 |
T13738 |
nsubj |
genome,contain |
| R3653 |
T13742 |
T13741 |
amod |
budding,genome |
| R3654 |
T13743 |
T13741 |
compound |
yeast,genome |
| R3655 |
T13744 |
T13738 |
aux |
does,contain |
| R3656 |
T13745 |
T13738 |
neg |
not,contain |
| R3657 |
T13746 |
T13747 |
compound |
heterochromatin,regions |
| R3658 |
T13747 |
T13738 |
dobj |
regions,contain |
| R3659 |
T13748 |
T13747 |
amod |
equivalent,regions |
| R3660 |
T13749 |
T13748 |
prep |
to,equivalent |
| R3661 |
T13750 |
T13749 |
pobj |
those,to |
| R3662 |
T13751 |
T13750 |
prep |
of,those |
| R3663 |
T13752 |
T13753 |
amod |
higher,eukaryotes |
| R3664 |
T13753 |
T13751 |
pobj |
eukaryotes,of |
| R3665 |
T13754 |
T13738 |
punct |
", ",contain |
| R3666 |
T13755 |
T13738 |
cc |
and,contain |
| R3667 |
T13756 |
T13757 |
amod |
several,features |
| R3668 |
T13757 |
T13759 |
nsubjpass |
features,observed |
| R3669 |
T13758 |
T13757 |
compound |
hallmark,features |
| R3670 |
T13759 |
T13738 |
conj |
observed,contain |
| R3671 |
T13760 |
T13757 |
prep |
of,features |
| R3672 |
T13761 |
T13760 |
pobj |
heterochromatin,of |
| R3673 |
T13762 |
T13763 |
amod |
such,as |
| R3674 |
T13763 |
T13757 |
prep |
as,features |
| R3675 |
T13764 |
T13765 |
nmod |
di,trimethylation |
| R3676 |
T13765 |
T13763 |
pobj |
trimethylation,as |
| R3677 |
T13766 |
T13765 |
punct |
-,trimethylation |
| R3678 |
T13767 |
T13765 |
cc |
and,trimethylation |
| R3679 |
T13768 |
T13765 |
prep |
at,trimethylation |
| R3680 |
T13769 |
T13768 |
pobj |
H3K9,at |
| R3681 |
T13770 |
T13769 |
punct |
", ",H3K9 |
| R3682 |
T13771 |
T13769 |
conj |
H3K27,H3K9 |
| R3683 |
T13772 |
T13771 |
punct |
", ",H3K27 |
| R3684 |
T13773 |
T13771 |
cc |
and,H3K27 |
| R3685 |
T13774 |
T13771 |
conj |
H4K20,H3K27 |
| R3686 |
T13775 |
T13759 |
auxpass |
are,observed |
| R3687 |
T13776 |
T13759 |
neg |
not,observed |
| R3688 |
T13777 |
T13759 |
prep |
in,observed |
| R3689 |
T13778 |
T13779 |
det |
the,chromatin |
| R3690 |
T13779 |
T13777 |
pobj |
chromatin,in |
| R3691 |
T13780 |
T13779 |
amod |
silent,chromatin |
| R3692 |
T13781 |
T13779 |
prep |
of,chromatin |
| R3693 |
T13782 |
T13783 |
compound |
S.,cerevisiae |
| R3694 |
T13783 |
T13781 |
pobj |
cerevisiae,of |
| R3695 |
T13784 |
T13738 |
punct |
.,contain |
| R3696 |
T13786 |
T13787 |
prep |
In,associated |
| R3697 |
T13788 |
T13786 |
pobj |
mammals,In |
| R3698 |
T13789 |
T13787 |
punct |
", ",associated |
| R3699 |
T13790 |
T13791 |
compound |
H3K9,dimethylation |
| R3700 |
T13791 |
T13787 |
nsubjpass |
dimethylation,associated |
| R3701 |
T13792 |
T13787 |
auxpass |
is,associated |
| R3702 |
T13793 |
T13787 |
advmod |
predominantly,associated |
| R3703 |
T13794 |
T13787 |
prep |
with,associated |
| R3704 |
T13795 |
T13794 |
pobj |
H3.1,with |
| R3705 |
T13796 |
T13794 |
punct |
", ",with |
| R3706 |
T13797 |
T13794 |
cc |
but,with |
| R3707 |
T13798 |
T13797 |
neg |
not,but |
| R3708 |
T13799 |
T13794 |
conj |
with,with |
| R3709 |
T13800 |
T13799 |
pobj |
H3.3,with |
| R3710 |
T13801 |
T13800 |
punct |
", ",H3.3 |
| R3711 |
T13802 |
T13803 |
dep |
which,carries |
| R3712 |
T13803 |
T13800 |
relcl |
carries,H3.3 |
| R3713 |
T13804 |
T13803 |
dobj |
modifications,carries |
| R3714 |
T13805 |
T13806 |
advmod |
typically,found |
| R3715 |
T13806 |
T13804 |
acl |
found,modifications |
| R3716 |
T13807 |
T13806 |
prep |
in,found |
| R3717 |
T13808 |
T13809 |
amod |
transcribed,regions |
| R3718 |
T13809 |
T13807 |
pobj |
regions,in |
| R3719 |
T13810 |
T13809 |
compound |
chromatin,regions |
| R3720 |
T13811 |
T13812 |
punct |
[,39 |
| R3721 |
T13812 |
T13787 |
parataxis |
39,associated |
| R3722 |
T13813 |
T13812 |
punct |
],39 |
| R3723 |
T13814 |
T13787 |
punct |
.,associated |
| R3724 |
T13816 |
T13817 |
prep |
Outside,possesses |
| R3725 |
T13818 |
T13816 |
prep |
of,Outside |
| R3726 |
T13819 |
T13820 |
det |
the,variant |
| R3727 |
T13820 |
T13818 |
pobj |
variant,of |
| R3728 |
T13821 |
T13820 |
amod |
centromeric,variant |
| R3729 |
T13822 |
T13820 |
compound |
H3,variant |
| R3730 |
T13823 |
T13817 |
punct |
", ",possesses |
| R3731 |
T13824 |
T13825 |
compound |
S.,cerevisiae |
| R3732 |
T13825 |
T13817 |
nsubj |
cerevisiae,possesses |
| R3733 |
T13826 |
T13827 |
advmod |
only,H3.3 |
| R3734 |
T13827 |
T13817 |
dobj |
H3.3,possesses |
| R3735 |
T13828 |
T13827 |
punct |
", ",H3.3 |
| R3736 |
T13829 |
T13830 |
dep |
which,expressed |
| R3737 |
T13830 |
T13827 |
relcl |
expressed,H3.3 |
| R3738 |
T13831 |
T13830 |
aux |
is,expressed |
| R3739 |
T13832 |
T13830 |
cc |
and,expressed |
| R3740 |
T13833 |
T13830 |
conj |
incorporated,expressed |
| R3741 |
T13834 |
T13833 |
prep |
into,incorporated |
| R3742 |
T13835 |
T13834 |
pobj |
chromatin,into |
| R3743 |
T13836 |
T13830 |
prep |
in,expressed |
| R3744 |
T13837 |
T13838 |
det |
a,fashion |
| R3745 |
T13838 |
T13836 |
pobj |
fashion,in |
| R3746 |
T13839 |
T13840 |
npadvmod |
replication,independent |
| R3747 |
T13840 |
T13838 |
amod |
independent,fashion |
| R3748 |
T13841 |
T13840 |
punct |
-,independent |
| R3749 |
T13842 |
T13830 |
prep |
in,expressed |
| R3750 |
T13843 |
T13844 |
amod |
higher,eukaryotes |
| R3751 |
T13844 |
T13842 |
pobj |
eukaryotes,in |
| R3752 |
T13845 |
T13846 |
punct |
[,12 |
| R3753 |
T13846 |
T13817 |
parataxis |
12,possesses |
| R3754 |
T13847 |
T13846 |
punct |
],12 |
| R3755 |
T13848 |
T13817 |
punct |
.,possesses |
| R3756 |
T13850 |
T13851 |
det |
These,data |
| R3757 |
T13851 |
T13852 |
nsubj |
data,suggest |
| R3758 |
T13853 |
T13854 |
det |
a,role |
| R3759 |
T13854 |
T13852 |
dobj |
role,suggest |
| R3760 |
T13855 |
T13854 |
amod |
specific,role |
| R3761 |
T13856 |
T13854 |
prep |
for,role |
| R3762 |
T13857 |
T13856 |
pobj |
H3.1,for |
| R3763 |
T13858 |
T13854 |
prep |
in,role |
| R3764 |
T13859 |
T13860 |
compound |
heterochromatin,regions |
| R3765 |
T13860 |
T13858 |
pobj |
regions,in |
| R3766 |
T13861 |
T13852 |
punct |
.,suggest |
| R3767 |
T13863 |
T13864 |
nsubj |
We,show |
| R3768 |
T13865 |
T13864 |
advmod |
here,show |
| R3769 |
T13866 |
T13867 |
mark |
that,required |
| R3770 |
T13867 |
T13864 |
ccomp |
required,show |
| R3771 |
T13868 |
T13867 |
nsubjpass |
CAF,required |
| R3772 |
T13869 |
T13868 |
punct |
-,CAF |
| R3773 |
T13870 |
T13868 |
nummod |
1,CAF |
| R3774 |
T13871 |
T13868 |
punct |
", ",CAF |
| R3775 |
T13872 |
T13873 |
dep |
which,is |
| R3776 |
T13873 |
T13868 |
relcl |
is,CAF |
| R3777 |
T13874 |
T13875 |
det |
a,complex |
| R3778 |
T13875 |
T13873 |
attr |
complex,is |
| R3779 |
T13876 |
T13875 |
nmod |
H3.1,complex |
| R3780 |
T13877 |
T13878 |
npadvmod |
replication,dependent |
| R3781 |
T13878 |
T13875 |
amod |
dependent,complex |
| R3782 |
T13879 |
T13878 |
punct |
-,dependent |
| R3783 |
T13880 |
T13875 |
compound |
loading,complex |
| R3784 |
T13881 |
T13882 |
punct |
[,11 |
| R3785 |
T13882 |
T13868 |
parataxis |
11,CAF |
| R3786 |
T13883 |
T13882 |
punct |
],11 |
| R3787 |
T13884 |
T13867 |
punct |
", ",required |
| R3788 |
T13885 |
T13867 |
auxpass |
is,required |
| R3789 |
T13886 |
T13867 |
advmod |
specifically,required |
| R3790 |
T13887 |
T13867 |
prep |
for,required |
| R3791 |
T13888 |
T13889 |
det |
the,organization |
| R3792 |
T13889 |
T13887 |
pobj |
organization,for |
| R3793 |
T13890 |
T13889 |
amod |
nuclear,organization |
| R3794 |
T13891 |
T13889 |
prep |
of,organization |
| R3795 |
T13892 |
T13893 |
amod |
pericentric,heterochromatin |
| R3796 |
T13893 |
T13891 |
pobj |
heterochromatin,of |
| R3797 |
T13894 |
T13867 |
prep |
in,required |
| R3798 |
T13895 |
T13894 |
pobj |
embryos,in |
| R3799 |
T13896 |
T13895 |
cc |
and,embryos |
| R3800 |
T13897 |
T13898 |
compound |
ES,cells |
| R3801 |
T13898 |
T13895 |
conj |
cells,embryos |
| R3802 |
T13899 |
T13864 |
punct |
.,show |
| R3803 |
T13901 |
T13902 |
nummod |
One,possibility |
| R3804 |
T13902 |
T13903 |
nsubj |
possibility,be |
| R3805 |
T13904 |
T13903 |
aux |
would,be |
| R3806 |
T13905 |
T13906 |
det |
a,scenario |
| R3807 |
T13906 |
T13903 |
attr |
scenario,be |
| R3808 |
T13907 |
T13908 |
prep |
in,required |
| R3809 |
T13908 |
T13906 |
relcl |
required,scenario |
| R3810 |
T13909 |
T13907 |
pobj |
which,in |
| R3811 |
T13910 |
T13908 |
nsubjpass |
incorporation,required |
| R3812 |
T13911 |
T13910 |
prep |
of,incorporation |
| R3813 |
T13912 |
T13911 |
pobj |
H3.1,of |
| R3814 |
T13913 |
T13910 |
prep |
into,incorporation |
| R3815 |
T13914 |
T13913 |
pobj |
chromatin,into |
| R3816 |
T13915 |
T13908 |
auxpass |
is,required |
| R3817 |
T13916 |
T13908 |
prep |
for,required |
| R3818 |
T13917 |
T13918 |
det |
the,organization |
| R3819 |
T13918 |
T13916 |
pobj |
organization,for |
| R3820 |
T13919 |
T13918 |
amod |
proper,organization |
| R3821 |
T13920 |
T13918 |
amod |
nuclear,organization |
| R3822 |
T13921 |
T13918 |
prep |
of,organization |
| R3823 |
T13922 |
T13923 |
amod |
constitutive,heterochromatin |
| R3824 |
T13923 |
T13921 |
pobj |
heterochromatin,of |
| R3825 |
T13924 |
T13908 |
prep |
in,required |
| R3826 |
T13925 |
T13926 |
det |
an,context |
| R3827 |
T13926 |
T13924 |
pobj |
context,in |
| R3828 |
T13927 |
T13926 |
amod |
embryonic,context |
| R3829 |
T13928 |
T13903 |
punct |
.,be |
| R3830 |
T13930 |
T13931 |
mark |
While,has |
| R3831 |
T13931 |
T13933 |
advcl |
has,is |
| R3832 |
T13932 |
T13931 |
nsubj |
this,has |
| R3833 |
T13934 |
T13935 |
aux |
to,addressed |
| R3834 |
T13935 |
T13931 |
xcomp |
addressed,has |
| R3835 |
T13936 |
T13935 |
auxpass |
be,addressed |
| R3836 |
T13937 |
T13935 |
advmod |
experimentally,addressed |
| R3837 |
T13938 |
T13933 |
punct |
", ",is |
| R3838 |
T13939 |
T13933 |
nsubj |
it,is |
| R3839 |
T13940 |
T13933 |
acomp |
worthwhile,is |
| R3840 |
T13941 |
T13942 |
aux |
to,mention |
| R3841 |
T13942 |
T13933 |
xcomp |
mention,is |
| R3842 |
T13943 |
T13944 |
det |
an,mechanism |
| R3843 |
T13944 |
T13942 |
dobj |
mechanism,mention |
| R3844 |
T13945 |
T13944 |
amod |
alternate,mechanism |
| R3845 |
T13946 |
T13944 |
amod |
possible,mechanism |
| R3846 |
T13947 |
T13948 |
dep |
that,explain |
| R3847 |
T13948 |
T13944 |
relcl |
explain,mechanism |
| R3848 |
T13949 |
T13948 |
aux |
might,explain |
| R3849 |
T13950 |
T13951 |
det |
the,disruption |
| R3850 |
T13951 |
T13948 |
dobj |
disruption,explain |
| R3851 |
T13952 |
T13951 |
prep |
of,disruption |
| R3852 |
T13953 |
T13954 |
compound |
heterochromatin,domains |
| R3853 |
T13954 |
T13952 |
pobj |
domains,of |
| R3854 |
T13955 |
T13951 |
prep |
in,disruption |
| R3855 |
T13956 |
T13957 |
npadvmod |
p150CAF,null |
| R3856 |
T13957 |
T13960 |
amod |
null,embryos |
| R3857 |
T13958 |
T13956 |
punct |
-,p150CAF |
| R3858 |
T13959 |
T13956 |
nummod |
1,p150CAF |
| R3859 |
T13960 |
T13955 |
pobj |
embryos,in |
| R3860 |
T13961 |
T13960 |
cc |
and,embryos |
| R3861 |
T13962 |
T13963 |
compound |
ES,cells |
| R3862 |
T13963 |
T13960 |
conj |
cells,embryos |
| R3863 |
T13964 |
T13933 |
punct |
.,is |
| R3864 |
T13966 |
T13967 |
nsubjpass |
CAF,required |
| R3865 |
T13968 |
T13966 |
punct |
-,CAF |
| R3866 |
T13969 |
T13966 |
nummod |
1,CAF |
| R3867 |
T13970 |
T13967 |
aux |
could,required |
| R3868 |
T13971 |
T13967 |
auxpass |
be,required |
| R3869 |
T13972 |
T13967 |
prep |
for,required |
| R3870 |
T13973 |
T13974 |
det |
the,loading |
| R3871 |
T13974 |
T13972 |
pobj |
loading,for |
| R3872 |
T13975 |
T13974 |
punct |
", ",loading |
| R3873 |
T13976 |
T13974 |
prep |
into,loading |
| R3874 |
T13977 |
T13976 |
pobj |
heterochromatin,into |
| R3875 |
T13978 |
T13974 |
punct |
", ",loading |
| R3876 |
T13979 |
T13974 |
prep |
of,loading |
| R3877 |
T13980 |
T13981 |
det |
an,partner |
| R3878 |
T13981 |
T13979 |
pobj |
partner,of |
| R3879 |
T13982 |
T13981 |
amod |
interacting,partner |
| R3880 |
T13983 |
T13981 |
acl |
required,partner |
| R3881 |
T13984 |
T13983 |
prep |
for,required |
| R3882 |
T13985 |
T13986 |
det |
the,clustering |
| R3883 |
T13986 |
T13984 |
pobj |
clustering,for |
| R3884 |
T13987 |
T13986 |
prep |
of,clustering |
| R3885 |
T13988 |
T13989 |
amod |
pericentric,domains |
| R3886 |
T13989 |
T13987 |
pobj |
domains,of |
| R3887 |
T13990 |
T13967 |
punct |
.,required |
| R3888 |
T13992 |
T13993 |
prep |
Following,become |
| R3889 |
T13994 |
T13995 |
nummod |
one,rounds |
| R3890 |
T13995 |
T13992 |
pobj |
rounds,Following |
| R3891 |
T13996 |
T13994 |
cc |
or,one |
| R3892 |
T13997 |
T13994 |
conj |
two,one |
| R3893 |
T13998 |
T13995 |
prep |
of,rounds |
| R3894 |
T13999 |
T14000 |
compound |
DNA,replication |
| R3895 |
T14000 |
T13998 |
pobj |
replication,of |
| R3896 |
T14001 |
T14000 |
prep |
in,replication |
| R3897 |
T14002 |
T14003 |
det |
the,absence |
| R3898 |
T14003 |
T14001 |
pobj |
absence,in |
| R3899 |
T14004 |
T14003 |
prep |
of,absence |
| R3900 |
T14005 |
T14004 |
pobj |
p150CAF,of |
| R3901 |
T14006 |
T14005 |
punct |
-,p150CAF |
| R3902 |
T14007 |
T14005 |
nummod |
1,p150CAF |
| R3903 |
T14008 |
T13993 |
punct |
", ",become |
| R3904 |
T14009 |
T13993 |
nsubj |
heterochromatin,become |
| R3905 |
T14010 |
T13993 |
aux |
would,become |
| R3906 |
T14011 |
T13993 |
acomp |
deprived,become |
| R3907 |
T14012 |
T14011 |
prep |
of,deprived |
| R3908 |
T14013 |
T14014 |
det |
this,molecule |
| R3909 |
T14014 |
T14012 |
pobj |
molecule,of |
| R3910 |
T14015 |
T13993 |
punct |
", ",become |
| R3911 |
T14016 |
T14017 |
dep |
which,cause |
| R3912 |
T14017 |
T13993 |
advcl |
cause,become |
| R3913 |
T14018 |
T14017 |
aux |
would,cause |
| R3914 |
T14019 |
T14020 |
det |
the,disruption |
| R3915 |
T14020 |
T14017 |
dobj |
disruption,cause |
| R3916 |
T14021 |
T14020 |
prep |
of,disruption |
| R3917 |
T14022 |
T14023 |
poss |
its,organization |
| R3918 |
T14023 |
T14021 |
pobj |
organization,of |
| R3919 |
T14024 |
T14025 |
nummod |
3,D |
| R3920 |
T14025 |
T14023 |
compound |
D,organization |
| R3921 |
T14026 |
T14025 |
punct |
-,D |
| R3922 |
T14027 |
T13993 |
punct |
.,become |
| R3923 |
T14029 |
T14030 |
det |
A,candidate |
| R3924 |
T14030 |
T14032 |
nsubj |
candidate,is |
| R3925 |
T14031 |
T14030 |
amod |
potential,candidate |
| R3926 |
T14033 |
T14034 |
det |
the,protein |
| R3927 |
T14034 |
T14032 |
attr |
protein,is |
| R3928 |
T14035 |
T14034 |
compound |
HP1,protein |
| R3929 |
T14036 |
T14034 |
punct |
", ",protein |
| R3930 |
T14037 |
T14038 |
dep |
which,interacts |
| R3931 |
T14038 |
T14034 |
relcl |
interacts,protein |
| R3932 |
T14039 |
T14038 |
prep |
with,interacts |
| R3933 |
T14040 |
T14039 |
pobj |
CAF,with |
| R3934 |
T14041 |
T14040 |
punct |
-,CAF |
| R3935 |
T14042 |
T14040 |
nummod |
1,CAF |
| R3936 |
T14043 |
T14044 |
punct |
[,16 |
| R3937 |
T14044 |
T14032 |
parataxis |
16,is |
| R3938 |
T14045 |
T14044 |
nummod |
13,16 |
| R3939 |
T14046 |
T14044 |
punct |
",",16 |
| R3940 |
T14047 |
T14044 |
punct |
],16 |
| R3941 |
T14048 |
T14032 |
punct |
.,is |
| R3942 |
T14050 |
T14051 |
prep |
In,revealed |
| R3943 |
T14052 |
T14050 |
pobj |
agreement,In |
| R3944 |
T14053 |
T14052 |
prep |
with,agreement |
| R3945 |
T14054 |
T14055 |
det |
a,report |
| R3946 |
T14055 |
T14053 |
pobj |
report,with |
| R3947 |
T14056 |
T14055 |
amod |
recent,report |
| R3948 |
T14057 |
T14058 |
punct |
[,40 |
| R3949 |
T14058 |
T14052 |
parataxis |
40,agreement |
| R3950 |
T14059 |
T14058 |
punct |
],40 |
| R3951 |
T14060 |
T14051 |
punct |
", ",revealed |
| R3952 |
T14061 |
T14062 |
poss |
our,analysis |
| R3953 |
T14062 |
T14051 |
nsubj |
analysis,revealed |
| R3954 |
T14063 |
T14062 |
prep |
of,analysis |
| R3955 |
T14064 |
T14063 |
pobj |
heterochromatin,of |
| R3956 |
T14065 |
T14064 |
prep |
in,heterochromatin |
| R3957 |
T14066 |
T14067 |
amod |
pre-implantation,embryos |
| R3958 |
T14067 |
T14065 |
pobj |
embryos,in |
| R3959 |
T14068 |
T14051 |
aux |
has,revealed |
| R3960 |
T14069 |
T14070 |
amod |
drastic,changes |
| R3961 |
T14070 |
T14051 |
dobj |
changes,revealed |
| R3962 |
T14071 |
T14070 |
prep |
in,changes |
| R3963 |
T14072 |
T14073 |
amod |
nuclear,organization |
| R3964 |
T14073 |
T14071 |
pobj |
organization,in |
| R3965 |
T14074 |
T14070 |
prep |
between,changes |
| R3966 |
T14075 |
T14076 |
det |
the,stages |
| R3967 |
T14076 |
T14074 |
pobj |
stages,between |
| R3968 |
T14077 |
T14078 |
nummod |
two,cell |
| R3969 |
T14078 |
T14076 |
nmod |
cell,stages |
| R3970 |
T14079 |
T14078 |
punct |
-,cell |
| R3971 |
T14080 |
T14078 |
cc |
and,cell |
| R3972 |
T14081 |
T14078 |
conj |
blastocyst,cell |
| R3973 |
T14082 |
T14051 |
punct |
.,revealed |
| R3974 |
T14084 |
T14085 |
compound |
Cloning,experiments |
| R3975 |
T14085 |
T14086 |
nsubj |
experiments,revealed |
| R3976 |
T14087 |
T14085 |
prep |
in,experiments |
| R3977 |
T14088 |
T14087 |
pobj |
mouse,in |
| R3978 |
T14089 |
T14090 |
mark |
that,reverted |
| R3979 |
T14090 |
T14086 |
ccomp |
reverted,revealed |
| R3980 |
T14091 |
T14092 |
det |
the,organization |
| R3981 |
T14092 |
T14090 |
nsubjpass |
organization,reverted |
| R3982 |
T14093 |
T14092 |
amod |
nuclear,organization |
| R3983 |
T14094 |
T14092 |
prep |
of,organization |
| R3984 |
T14095 |
T14094 |
pobj |
heterochromatin,of |
| R3985 |
T14096 |
T14092 |
prep |
in,organization |
| R3986 |
T14097 |
T14098 |
compound |
ES,nuclei |
| R3987 |
T14098 |
T14096 |
pobj |
nuclei,in |
| R3988 |
T14099 |
T14098 |
compound |
cell,nuclei |
| R3989 |
T14100 |
T14090 |
auxpass |
was,reverted |
| R3990 |
T14101 |
T14090 |
advmod |
quickly,reverted |
| R3991 |
T14102 |
T14090 |
prep |
into,reverted |
| R3992 |
T14103 |
T14104 |
det |
the,form |
| R3993 |
T14104 |
T14102 |
pobj |
form,into |
| R3994 |
T14105 |
T14106 |
nummod |
one,cell |
| R3995 |
T14106 |
T14104 |
nmod |
cell,form |
| R3996 |
T14107 |
T14106 |
punct |
-,cell |
| R3997 |
T14108 |
T14109 |
npadvmod |
stage,specific |
| R3998 |
T14109 |
T14104 |
amod |
specific,form |
| R3999 |
T14110 |
T14109 |
punct |
-,specific |
| R4000 |
T14111 |
T14090 |
prep |
after,reverted |
| R4001 |
T14112 |
T14113 |
amod |
nuclear,transfer |
| R4002 |
T14113 |
T14111 |
pobj |
transfer,after |
| R4003 |
T14114 |
T14115 |
punct |
[,40 |
| R4004 |
T14115 |
T14086 |
parataxis |
40,revealed |
| R4005 |
T14116 |
T14115 |
punct |
],40 |
| R4006 |
T14117 |
T14086 |
punct |
.,revealed |
| R4007 |
T14119 |
T14120 |
advmod |
Hence,parallels |
| R4008 |
T14121 |
T14120 |
punct |
", ",parallels |
| R4009 |
T14122 |
T14120 |
nsubj |
remodeling,parallels |
| R4010 |
T14123 |
T14122 |
prep |
of,remodeling |
| R4011 |
T14124 |
T14125 |
nmod |
heterochromatin,organization |
| R4012 |
T14125 |
T14123 |
pobj |
organization,of |
| R4013 |
T14126 |
T14127 |
nummod |
3,D |
| R4014 |
T14127 |
T14125 |
compound |
D,organization |
| R4015 |
T14128 |
T14127 |
punct |
-,D |
| R4016 |
T14129 |
T14130 |
amod |
nuclear,reprogramming |
| R4017 |
T14130 |
T14120 |
dobj |
reprogramming,parallels |
| R4018 |
T14131 |
T14130 |
prep |
toward,reprogramming |
| R4019 |
T14132 |
T14133 |
det |
an,status |
| R4020 |
T14133 |
T14131 |
pobj |
status,toward |
| R4021 |
T14134 |
T14135 |
amod |
early,embryonic |
| R4022 |
T14135 |
T14133 |
amod |
embryonic,status |
| R4023 |
T14136 |
T14133 |
prep |
in,status |
| R4024 |
T14137 |
T14138 |
amod |
cloned,embryos |
| R4025 |
T14138 |
T14136 |
pobj |
embryos,in |
| R4026 |
T14139 |
T14120 |
punct |
.,parallels |
| R4027 |
T14141 |
T14142 |
det |
This,reorganization |
| R4028 |
T14142 |
T14144 |
nsubj |
reorganization,is |
| R4029 |
T14143 |
T14142 |
amod |
drastic,reorganization |
| R4030 |
T14145 |
T14142 |
prep |
of,reorganization |
| R4031 |
T14146 |
T14147 |
compound |
heterochromatin,organization |
| R4032 |
T14147 |
T14145 |
pobj |
organization,of |
| R4033 |
T14148 |
T14144 |
acomp |
similar,is |
| R4034 |
T14149 |
T14148 |
prep |
to,similar |
| R4035 |
T14150 |
T14149 |
pobj |
that,to |
| R4036 |
T14151 |
T14150 |
acl |
observed,that |
| R4037 |
T14152 |
T14151 |
prep |
in,observed |
| R4038 |
T14153 |
T14154 |
npadvmod |
p150CAF,depleted |
| R4039 |
T14154 |
T14158 |
amod |
depleted,cells |
| R4040 |
T14155 |
T14153 |
punct |
-,p150CAF |
| R4041 |
T14156 |
T14153 |
nummod |
1,p150CAF |
| R4042 |
T14157 |
T14154 |
punct |
-,depleted |
| R4043 |
T14158 |
T14152 |
pobj |
cells,in |
| R4044 |
T14159 |
T14158 |
compound |
ES,cells |
| R4045 |
T14160 |
T14152 |
punct |
", ",in |
| R4046 |
T14161 |
T14152 |
cc |
and,in |
| R4047 |
T14162 |
T14152 |
conj |
in,in |
| R4048 |
T14163 |
T14164 |
advmod |
developmentally,arrested |
| R4049 |
T14164 |
T14165 |
amod |
arrested,embryos |
| R4050 |
T14165 |
T14162 |
pobj |
embryos,in |
| R4051 |
T14166 |
T14167 |
nummod |
16,cell |
| R4052 |
T14167 |
T14169 |
nmod |
cell,stage |
| R4053 |
T14168 |
T14167 |
punct |
-,cell |
| R4054 |
T14169 |
T14165 |
nmod |
stage,embryos |
| R4055 |
T14170 |
T14165 |
nmod |
Chaf1a,embryos |
| R4056 |
T14171 |
T14170 |
punct |
−,Chaf1a |
| R4057 |
T14172 |
T14170 |
punct |
/,Chaf1a |
| R4058 |
T14173 |
T14170 |
punct |
−,Chaf1a |
| R4059 |
T14174 |
T14144 |
punct |
.,is |
| R4060 |
T14176 |
T14177 |
det |
These,data |
| R4061 |
T14177 |
T14178 |
nsubj |
data,show |
| R4062 |
T14179 |
T14180 |
mark |
that,involved |
| R4063 |
T14180 |
T14178 |
ccomp |
involved,show |
| R4064 |
T14181 |
T14180 |
nsubjpass |
CAF,involved |
| R4065 |
T14182 |
T14181 |
punct |
-,CAF |
| R4066 |
T14183 |
T14181 |
nummod |
1,CAF |
| R4067 |
T14184 |
T14180 |
auxpass |
is,involved |
| R4068 |
T14185 |
T14180 |
prep |
in,involved |
| R4069 |
T14186 |
T14185 |
pcomp |
setting,in |
| R4070 |
T14187 |
T14186 |
prt |
up,setting |
| R4071 |
T14188 |
T14189 |
amod |
proper,architecture |
| R4072 |
T14189 |
T14186 |
dobj |
architecture,setting |
| R4073 |
T14190 |
T14189 |
compound |
heterochromatin,architecture |
| R4074 |
T14191 |
T14186 |
prep |
during,setting |
| R4075 |
T14192 |
T14193 |
det |
the,divisions |
| R4076 |
T14193 |
T14191 |
pobj |
divisions,during |
| R4077 |
T14194 |
T14193 |
amod |
first,divisions |
| R4078 |
T14195 |
T14193 |
compound |
cell,divisions |
| R4079 |
T14196 |
T14193 |
prep |
of,divisions |
| R4080 |
T14197 |
T14198 |
amod |
embryonic,life |
| R4081 |
T14198 |
T14196 |
pobj |
life,of |
| R4082 |
T14199 |
T14178 |
punct |
.,show |
| R4083 |
T14201 |
T14202 |
prep |
Given,suggests |
| R4084 |
T14203 |
T14204 |
det |
the,importance |
| R4085 |
T14204 |
T14201 |
pobj |
importance,Given |
| R4086 |
T14205 |
T14204 |
prep |
of,importance |
| R4087 |
T14206 |
T14207 |
amod |
nuclear,organization |
| R4088 |
T14207 |
T14205 |
pobj |
organization,of |
| R4089 |
T14208 |
T14204 |
prep |
in,importance |
| R4090 |
T14209 |
T14210 |
det |
the,control |
| R4091 |
T14210 |
T14208 |
pobj |
control,in |
| R4092 |
T14211 |
T14210 |
prep |
of,control |
| R4093 |
T14212 |
T14213 |
compound |
gene,expression |
| R4094 |
T14213 |
T14211 |
pobj |
expression,of |
| R4095 |
T14214 |
T14215 |
punct |
[,41 |
| R4096 |
T14215 |
T14204 |
parataxis |
41,importance |
| R4097 |
T14216 |
T14215 |
nummod |
21,41 |
| R4098 |
T14217 |
T14215 |
punct |
",",41 |
| R4099 |
T14218 |
T14215 |
punct |
],41 |
| R4100 |
T14219 |
T14202 |
punct |
", ",suggests |
| R4101 |
T14220 |
T14221 |
det |
this,finding |
| R4102 |
T14221 |
T14202 |
nsubj |
finding,suggests |
| R4103 |
T14222 |
T14223 |
mark |
that,contributes |
| R4104 |
T14223 |
T14202 |
ccomp |
contributes,suggests |
| R4105 |
T14224 |
T14223 |
nsubj |
CAF,contributes |
| R4106 |
T14225 |
T14224 |
punct |
-,CAF |
| R4107 |
T14226 |
T14224 |
nummod |
1,CAF |
| R4108 |
T14227 |
T14223 |
prep |
to,contributes |
| R4109 |
T14228 |
T14229 |
det |
the,programs |
| R4110 |
T14229 |
T14227 |
pobj |
programs,to |
| R4111 |
T14230 |
T14229 |
amod |
coordinated,programs |
| R4112 |
T14231 |
T14229 |
prep |
of,programs |
| R4113 |
T14232 |
T14233 |
compound |
gene,expression |
| R4114 |
T14233 |
T14231 |
pobj |
expression,of |
| R4115 |
T14234 |
T14223 |
prep |
during,contributes |
| R4116 |
T14235 |
T14236 |
amod |
early,embryogenesis |
| R4117 |
T14236 |
T14234 |
pobj |
embryogenesis,during |
| R4118 |
T14237 |
T14202 |
punct |
.,suggests |
| R4119 |
T14239 |
T14240 |
poss |
Our,findings |
| R4120 |
T14240 |
T14241 |
nsubj |
findings,open |
| R4121 |
T14242 |
T14243 |
amod |
new,perspectives |
| R4122 |
T14243 |
T14241 |
dobj |
perspectives,open |
| R4123 |
T14244 |
T14243 |
prep |
in,perspectives |
| R4124 |
T14245 |
T14246 |
det |
the,understanding |
| R4125 |
T14246 |
T14244 |
pobj |
understanding,in |
| R4126 |
T14247 |
T14246 |
prep |
of,understanding |
| R4127 |
T14248 |
T14249 |
compound |
chromatin,dynamics |
| R4128 |
T14249 |
T14247 |
pobj |
dynamics,of |
| R4129 |
T14250 |
T14241 |
prep |
during,open |
| R4130 |
T14251 |
T14252 |
amod |
early,development |
| R4131 |
T14252 |
T14250 |
pobj |
development,during |
| R4132 |
T14253 |
T14250 |
cc |
and,during |
| R4133 |
T14254 |
T14250 |
conj |
in,during |
| R4134 |
T14255 |
T14256 |
amod |
pluripotent,cells |
| R4135 |
T14256 |
T14254 |
pobj |
cells,in |
| R4136 |
T14257 |
T14256 |
amod |
embryonic,cells |
| R4137 |
T14258 |
T14241 |
punct |
.,open |
| R4138 |
T14260 |
T14261 |
mark |
While,focused |
| R4139 |
T14261 |
T14264 |
advcl |
focused,point |
| R4140 |
T14262 |
T14263 |
amod |
most,studies |
| R4141 |
T14263 |
T14261 |
nsubj |
studies,focused |
| R4142 |
T14265 |
T14261 |
prep |
on,focused |
| R4143 |
T14266 |
T14267 |
det |
the,role |
| R4144 |
T14267 |
T14265 |
pobj |
role,on |
| R4145 |
T14268 |
T14267 |
prep |
of,role |
| R4146 |
T14269 |
T14270 |
compound |
DNA,methylation |
| R4147 |
T14270 |
T14268 |
pobj |
methylation,of |
| R4148 |
T14271 |
T14270 |
cc |
and,methylation |
| R4149 |
T14272 |
T14273 |
npadvmod |
histone,modifying |
| R4150 |
T14273 |
T14274 |
amod |
modifying,enzymes |
| R4151 |
T14274 |
T14270 |
conj |
enzymes,methylation |
| R4152 |
T14275 |
T14276 |
punct |
[,3 |
| R4153 |
T14276 |
T14261 |
parataxis |
3,focused |
| R4154 |
T14277 |
T14276 |
punct |
],3 |
| R4155 |
T14278 |
T14264 |
punct |
", ",point |
| R4156 |
T14279 |
T14280 |
poss |
our,data |
| R4157 |
T14280 |
T14264 |
nsubj |
data,point |
| R4158 |
T14281 |
T14264 |
prep |
to,point |
| R4159 |
T14282 |
T14283 |
det |
the,importance |
| R4160 |
T14283 |
T14281 |
pobj |
importance,to |
| R4161 |
T14284 |
T14283 |
prep |
of,importance |
| R4162 |
T14285 |
T14286 |
det |
the,machinery |
| R4163 |
T14286 |
T14284 |
pobj |
machinery,of |
| R4164 |
T14287 |
T14288 |
compound |
chromatin,assembly |
| R4165 |
T14288 |
T14286 |
compound |
assembly,machinery |
| R4166 |
T14289 |
T14264 |
punct |
.,point |
| R4167 |
T14291 |
T14292 |
nsubj |
We,show |
| R4168 |
T14293 |
T14294 |
mark |
that,provides |
| R4169 |
T14294 |
T14292 |
ccomp |
provides,show |
| R4170 |
T14295 |
T14294 |
prep |
in,provides |
| R4171 |
T14296 |
T14295 |
pobj |
addition,in |
| R4172 |
T14297 |
T14296 |
prep |
to,addition |
| R4173 |
T14298 |
T14299 |
amod |
assembling,nucleosomes |
| R4174 |
T14299 |
T14297 |
pobj |
nucleosomes,to |
| R4175 |
T14300 |
T14294 |
punct |
", ",provides |
| R4176 |
T14301 |
T14294 |
nsubj |
CAF,provides |
| R4177 |
T14302 |
T14301 |
punct |
-,CAF |
| R4178 |
T14303 |
T14301 |
nummod |
1,CAF |
| R4179 |
T14304 |
T14305 |
amod |
spatial,information |
| R4180 |
T14305 |
T14294 |
dobj |
information,provides |
| R4181 |
T14306 |
T14304 |
cc |
and,spatial |
| R4182 |
T14307 |
T14304 |
conj |
epigenetic,spatial |
| R4183 |
T14308 |
T14294 |
prep |
to,provides |
| R4184 |
T14309 |
T14310 |
compound |
heterochromatin,domains |
| R4185 |
T14310 |
T14308 |
pobj |
domains,to |
| R4186 |
T14311 |
T14294 |
prep |
in,provides |
| R4187 |
T14312 |
T14313 |
amod |
early,embryos |
| R4188 |
T14313 |
T14311 |
pobj |
embryos,in |
| R4189 |
T14314 |
T14313 |
cc |
and,embryos |
| R4190 |
T14315 |
T14316 |
compound |
ES,cells |
| R4191 |
T14316 |
T14313 |
conj |
cells,embryos |
| R4192 |
T14317 |
T14292 |
punct |
.,show |
| R4195 |
T14829 |
T14828 |
prep |
of,Generation |
| R4196 |
T14830 |
T14831 |
compound |
Chaf1a,mutant |
| R4197 |
T14831 |
T14829 |
pobj |
mutant,of |
| R4198 |
T14832 |
T14831 |
appos |
mice,mutant |
| R4199 |
T14833 |
T14832 |
cc |
and,mice |
| R4200 |
T14834 |
T14832 |
conj |
embryos,mice |
| R4201 |
T14835 |
T14828 |
punct |
.,Generation |
| R4202 |
T14837 |
T14838 |
advcl |
Using,amplified |
| R4203 |
T14839 |
T14837 |
dobj |
PCR,Using |
| R4204 |
T14840 |
T14838 |
punct |
", ",amplified |
| R4205 |
T14841 |
T14838 |
nsubj |
we,amplified |
| R4206 |
T14842 |
T14843 |
nummod |
two,fragments |
| R4207 |
T14843 |
T14838 |
dobj |
fragments,amplified |
| R4208 |
T14844 |
T14843 |
amod |
genomic,fragments |
| R4209 |
T14845 |
T14846 |
punct |
(,kb |
| R4210 |
T14846 |
T14843 |
parataxis |
kb,fragments |
| R4211 |
T14847 |
T14848 |
quantmod |
about,3 |
| R4212 |
T14848 |
T14846 |
nummod |
3,kb |
| R4213 |
T14849 |
T14846 |
appos |
each,kb |
| R4214 |
T14850 |
T14846 |
punct |
),kb |
| R4215 |
T14851 |
T14843 |
acl |
flanking,fragments |
| R4216 |
T14852 |
T14853 |
compound |
Chaf1a,exon |
| R4217 |
T14853 |
T14851 |
dobj |
exon,flanking |
| R4218 |
T14854 |
T14853 |
nummod |
3,exon |
| R4219 |
T14855 |
T14838 |
punct |
.,amplified |
| R4220 |
T14857 |
T14858 |
det |
These,fragments |
| R4221 |
T14858 |
T14860 |
nsubjpass |
fragments,assembled |
| R4222 |
T14859 |
T14858 |
compound |
DNA,fragments |
| R4223 |
T14861 |
T14860 |
auxpass |
were,assembled |
| R4224 |
T14862 |
T14860 |
prep |
by,assembled |
| R4225 |
T14863 |
T14864 |
amod |
conventional,cloning |
| R4226 |
T14864 |
T14862 |
pobj |
cloning,by |
| R4227 |
T14865 |
T14864 |
prep |
with,cloning |
| R4228 |
T14866 |
T14867 |
det |
the,cassettes |
| R4229 |
T14867 |
T14865 |
pobj |
cassettes,with |
| R4230 |
T14868 |
T14867 |
nmod |
neomycin,cassettes |
| R4231 |
T14869 |
T14868 |
cc |
and,neomycin |
| R4232 |
T14870 |
T14868 |
conj |
DT,neomycin |
| R4233 |
T14871 |
T14870 |
punct |
(,DT |
| R4234 |
T14872 |
T14873 |
compound |
diphtheria,toxin |
| R4235 |
T14873 |
T14870 |
appos |
toxin,DT |
| R4236 |
T14874 |
T14867 |
punct |
),cassettes |
| R4237 |
T14875 |
T14860 |
punct |
", ",assembled |
| R4238 |
T14876 |
T14877 |
mark |
as,described |
| R4239 |
T14877 |
T14860 |
advcl |
described,assembled |
| R4240 |
T14878 |
T14877 |
prep |
in,described |
| R4241 |
T14879 |
T14880 |
compound |
Figure,1A |
| R4242 |
T14880 |
T14878 |
pobj |
1A,in |
| R4243 |
T14881 |
T14860 |
punct |
.,assembled |
| R4244 |
T14883 |
T14884 |
det |
The,construct |
| R4245 |
T14884 |
T14885 |
nsubjpass |
construct,transfected |
| R4246 |
T14886 |
T14885 |
auxpass |
was,transfected |
| R4247 |
T14887 |
T14885 |
prep |
in,transfected |
| R4248 |
T14888 |
T14889 |
compound |
ES,cells |
| R4249 |
T14889 |
T14887 |
pobj |
cells,in |
| R4250 |
T14890 |
T14885 |
prep |
by,transfected |
| R4251 |
T14891 |
T14890 |
pobj |
electroporation,by |
| R4252 |
T14892 |
T14885 |
punct |
.,transfected |
| R4253 |
T14894 |
T14895 |
nsubj |
We,identified |
| R4254 |
T14896 |
T14897 |
amod |
recombinant,cells |
| R4255 |
T14897 |
T14895 |
dobj |
cells,identified |
| R4256 |
T14898 |
T14897 |
compound |
ES,cells |
| R4257 |
T14899 |
T14897 |
acl |
carrying,cells |
| R4258 |
T14900 |
T14901 |
det |
the,allele |
| R4259 |
T14901 |
T14899 |
dobj |
allele,carrying |
| R4260 |
T14902 |
T14901 |
nmod |
mutant,allele |
| R4261 |
T14903 |
T14901 |
nmod |
Chaf1a tm1Ger,allele |
| R4262 |
T14904 |
T14905 |
punct |
(,abbreviated |
| R4263 |
T14905 |
T14903 |
parataxis |
abbreviated,Chaf1a tm1Ger |
| R4264 |
T14906 |
T14905 |
oprd |
Chaf1a,abbreviated |
| R4265 |
T14907 |
T14906 |
punct |
−,Chaf1a |
| R4266 |
T14908 |
T14905 |
prep |
in,abbreviated |
| R4267 |
T14909 |
T14910 |
det |
the,manuscript |
| R4268 |
T14910 |
T14908 |
pobj |
manuscript,in |
| R4269 |
T14911 |
T14905 |
punct |
),abbreviated |
| R4270 |
T14912 |
T14895 |
prep |
by,identified |
| R4271 |
T14913 |
T14914 |
compound |
Southern,blot |
| R4272 |
T14914 |
T14912 |
pobj |
blot,by |
| R4273 |
T14915 |
T14916 |
punct |
(,1A |
| R4274 |
T14916 |
T14895 |
parataxis |
1A,identified |
| R4275 |
T14917 |
T14916 |
compound |
Figure,1A |
| R4276 |
T14918 |
T14916 |
punct |
),1A |
| R4277 |
T14919 |
T14895 |
punct |
.,identified |
| R4278 |
T14921 |
T14922 |
nsubj |
We,derived |
| R4279 |
T14923 |
T14924 |
nmod |
Chaf1a,mice |
| R4280 |
T14924 |
T14922 |
dobj |
mice,derived |
| R4281 |
T14925 |
T14923 |
punct |
+,Chaf1a |
| R4282 |
T14926 |
T14923 |
punct |
/,Chaf1a |
| R4283 |
T14927 |
T14923 |
punct |
−,Chaf1a |
| R4284 |
T14928 |
T14922 |
prep |
by,derived |
| R4285 |
T14929 |
T14928 |
pcomp |
injecting,by |
| R4286 |
T14930 |
T14931 |
amod |
recombined,cells |
| R4287 |
T14931 |
T14929 |
dobj |
cells,injecting |
| R4288 |
T14932 |
T14931 |
compound |
ES,cells |
| R4289 |
T14933 |
T14929 |
prep |
into,injecting |
| R4290 |
T14934 |
T14935 |
compound |
C57BL,6N |
| R4291 |
T14935 |
T14937 |
compound |
6N,blastocysts |
| R4292 |
T14936 |
T14935 |
punct |
/,6N |
| R4293 |
T14937 |
T14933 |
pobj |
blastocysts,into |
| R4294 |
T14938 |
T14922 |
punct |
.,derived |
| R4295 |
T14940 |
T14941 |
compound |
E4,embryos |
| R4296 |
T14941 |
T14942 |
nsubjpass |
embryos,genotyped |
| R4297 |
T14943 |
T14941 |
acl |
obtained,embryos |
| R4298 |
T14944 |
T14943 |
prep |
from,obtained |
| R4299 |
T14945 |
T14946 |
det |
the,intercross |
| R4300 |
T14946 |
T14944 |
pobj |
intercross,from |
| R4301 |
T14947 |
T14946 |
prep |
of,intercross |
| R4302 |
T14948 |
T14949 |
nmod |
Chaf1a,mice |
| R4303 |
T14949 |
T14947 |
pobj |
mice,of |
| R4304 |
T14950 |
T14948 |
punct |
+,Chaf1a |
| R4305 |
T14951 |
T14948 |
punct |
/,Chaf1a |
| R4306 |
T14952 |
T14948 |
punct |
−,Chaf1a |
| R4307 |
T14953 |
T14942 |
auxpass |
were,genotyped |
| R4308 |
T14954 |
T14942 |
prep |
by,genotyped |
| R4309 |
T14955 |
T14956 |
compound |
nested,PCR |
| R4310 |
T14956 |
T14958 |
compound |
PCR,amplification |
| R4311 |
T14957 |
T14956 |
punct |
-,PCR |
| R4312 |
T14958 |
T14954 |
pobj |
amplification,by |
| R4313 |
T14959 |
T14942 |
punct |
.,genotyped |
| R4314 |
T14961 |
T14962 |
nsubjpass |
Embryos,collected |
| R4315 |
T14963 |
T14962 |
auxpass |
were,collected |
| R4316 |
T14964 |
T14962 |
prep |
in,collected |
| R4317 |
T14965 |
T14966 |
det |
a,mix |
| R4318 |
T14966 |
T14964 |
pobj |
mix,in |
| R4319 |
T14967 |
T14966 |
compound |
PCR,mix |
| R4320 |
T14968 |
T14966 |
compound |
reaction,mix |
| R4321 |
T14969 |
T14966 |
acl |
containing,mix |
| R4322 |
T14970 |
T14971 |
nmod |
oligonucleotide,1 |
| R4323 |
T14971 |
T14969 |
dobj |
1,containing |
| R4324 |
T14972 |
T14971 |
nmod |
primers,1 |
| R4325 |
T14973 |
T14971 |
punct |
", ",1 |
| R4326 |
T14974 |
T14971 |
conj |
2,1 |
| R4327 |
T14975 |
T14974 |
punct |
", ",2 |
| R4328 |
T14976 |
T14974 |
cc |
and,2 |
| R4329 |
T14977 |
T14974 |
conj |
3,2 |
| R4330 |
T14978 |
T14979 |
punct |
(,1A |
| R4331 |
T14979 |
T14971 |
parataxis |
1A,1 |
| R4332 |
T14980 |
T14979 |
compound |
Figure,1A |
| R4333 |
T14981 |
T14979 |
punct |
),1A |
| R4334 |
T14982 |
T14983 |
dep |
that,amplify |
| R4335 |
T14983 |
T14971 |
relcl |
amplify,1 |
| R4336 |
T14984 |
T14985 |
det |
the,alleles |
| R4337 |
T14985 |
T14983 |
dobj |
alleles,amplify |
| R4338 |
T14986 |
T14987 |
amod |
wild,type |
| R4339 |
T14987 |
T14985 |
nmod |
type,alleles |
| R4340 |
T14988 |
T14987 |
punct |
-,type |
| R4341 |
T14989 |
T14987 |
cc |
and,type |
| R4342 |
T14990 |
T14987 |
conj |
mutant,type |
| R4343 |
T14991 |
T14962 |
punct |
.,collected |
| R4344 |
T14993 |
T14994 |
prep |
After,used |
| R4345 |
T14995 |
T14996 |
nummod |
30,cycles |
| R4346 |
T14996 |
T14993 |
pobj |
cycles,After |
| R4347 |
T14997 |
T14996 |
prep |
of,cycles |
| R4348 |
T14998 |
T14997 |
pobj |
amplification,of |
| R4349 |
T14999 |
T14994 |
punct |
", ",used |
| R4350 |
T15000 |
T15001 |
nummod |
1,μl |
| R4351 |
T15001 |
T14994 |
nsubjpass |
μl,used |
| R4352 |
T15002 |
T15001 |
prep |
of,μl |
| R4353 |
T15003 |
T15004 |
det |
each,reaction |
| R4354 |
T15004 |
T15002 |
pobj |
reaction,of |
| R4355 |
T15005 |
T15004 |
compound |
PCR,reaction |
| R4356 |
T15006 |
T14994 |
auxpass |
was,used |
| R4357 |
T15007 |
T14994 |
prep |
in,used |
| R4358 |
T15008 |
T15009 |
det |
a,round |
| R4359 |
T15009 |
T15007 |
pobj |
round,in |
| R4360 |
T15010 |
T15009 |
amod |
second,round |
| R4361 |
T15011 |
T15009 |
prep |
of,round |
| R4362 |
T15012 |
T15013 |
compound |
PCR,amplification |
| R4363 |
T15013 |
T15011 |
pobj |
amplification,of |
| R4364 |
T15014 |
T15009 |
prep |
with,round |
| R4365 |
T15015 |
T15016 |
det |
a,set |
| R4366 |
T15016 |
T15014 |
pobj |
set,with |
| R4367 |
T15017 |
T15016 |
amod |
new,set |
| R4368 |
T15018 |
T15016 |
prep |
of,set |
| R4369 |
T15019 |
T15020 |
compound |
oligonucleotide,primers |
| R4370 |
T15020 |
T15018 |
pobj |
primers,of |
| R4371 |
T15021 |
T14994 |
punct |
.,used |
| R4372 |
T15023 |
T15024 |
prep |
After,run |
| R4373 |
T15025 |
T15026 |
nummod |
30,cycles |
| R4374 |
T15026 |
T15023 |
pobj |
cycles,After |
| R4375 |
T15027 |
T15026 |
prep |
of,cycles |
| R4376 |
T15028 |
T15027 |
pobj |
amplification,of |
| R4377 |
T15029 |
T15024 |
punct |
", ",run |
| R4378 |
T15030 |
T15031 |
compound |
PCR,reactions |
| R4379 |
T15031 |
T15024 |
nsubjpass |
reactions,run |
| R4380 |
T15032 |
T15024 |
auxpass |
were,run |
| R4381 |
T15033 |
T15024 |
prep |
onto,run |
| R4382 |
T15034 |
T15035 |
det |
an,gel |
| R4383 |
T15035 |
T15033 |
pobj |
gel,onto |
| R4384 |
T15036 |
T15035 |
compound |
agarose,gel |
| R4385 |
T15037 |
T15035 |
punct |
", ",gel |
| R4386 |
T15038 |
T15039 |
dep |
which,revealed |
| R4387 |
T15039 |
T15035 |
relcl |
revealed,gel |
| R4388 |
T15040 |
T15041 |
det |
the,presence |
| R4389 |
T15041 |
T15039 |
dobj |
presence,revealed |
| R4390 |
T15042 |
T15041 |
prep |
of,presence |
| R4391 |
T15043 |
T15044 |
det |
the,alleles |
| R4392 |
T15044 |
T15042 |
pobj |
alleles,of |
| R4393 |
T15045 |
T15046 |
amod |
wild,type |
| R4394 |
T15046 |
T15044 |
nmod |
type,alleles |
| R4395 |
T15047 |
T15046 |
punct |
-,type |
| R4396 |
T15048 |
T15049 |
punct |
(,bp |
| R4397 |
T15049 |
T15046 |
parataxis |
bp,type |
| R4398 |
T15050 |
T15049 |
nummod |
150,bp |
| R4399 |
T15051 |
T15049 |
punct |
),bp |
| R4400 |
T15052 |
T15046 |
cc |
and,type |
| R4401 |
T15053 |
T15046 |
conj |
recombinant,type |
| R4402 |
T15054 |
T15055 |
punct |
(,bp |
| R4403 |
T15055 |
T15053 |
parataxis |
bp,recombinant |
| R4404 |
T15056 |
T15055 |
nummod |
200,bp |
| R4405 |
T15057 |
T15055 |
punct |
),bp |
| R4406 |
T15058 |
T15024 |
punct |
.,run |
| R4407 |
T15693 |
T15694 |
nmod |
P150CAF,depletion |
| R4408 |
T15695 |
T15693 |
punct |
-,P150CAF |
| R4409 |
T15696 |
T15693 |
nummod |
1,P150CAF |
| R4410 |
T15697 |
T15694 |
prep |
by,depletion |
| R4411 |
T15698 |
T15697 |
pobj |
RNAi,by |
| R4412 |
T15699 |
T15694 |
punct |
.,depletion |
| R4413 |
T15701 |
T15702 |
det |
The,vector |
| R4414 |
T15702 |
T15705 |
nsubj |
vector,contains |
| R4415 |
T15703 |
T15702 |
compound |
RNAi,vector |
| R4416 |
T15704 |
T15702 |
compound |
plasmid,vector |
| R4417 |
T15706 |
T15707 |
dep |
that,used |
| R4418 |
T15707 |
T15702 |
relcl |
used,vector |
| R4419 |
T15708 |
T15707 |
nsubj |
we,used |
| R4420 |
T15709 |
T15707 |
prep |
in,used |
| R4421 |
T15710 |
T15711 |
det |
this,study |
| R4422 |
T15711 |
T15709 |
pobj |
study,in |
| R4423 |
T15712 |
T15713 |
det |
the,promoter |
| R4424 |
T15713 |
T15705 |
dobj |
promoter,contains |
| R4425 |
T15714 |
T15713 |
compound |
mouse,promoter |
| R4426 |
T15715 |
T15713 |
compound |
H1,promoter |
| R4427 |
T15716 |
T15713 |
cc |
and,promoter |
| R4428 |
T15717 |
T15718 |
det |
a,gene |
| R4429 |
T15718 |
T15713 |
conj |
gene,promoter |
| R4430 |
T15719 |
T15718 |
compound |
puromycin,gene |
| R4431 |
T15720 |
T15718 |
compound |
selection,gene |
| R4432 |
T15721 |
T15722 |
punct |
(,data |
| R4433 |
T15722 |
T15705 |
parataxis |
data,contains |
| R4434 |
T15723 |
T15722 |
dep |
SB,data |
| R4435 |
T15724 |
T15723 |
cc |
and,SB |
| R4436 |
T15725 |
T15723 |
conj |
MG,SB |
| R4437 |
T15726 |
T15722 |
punct |
", ",data |
| R4438 |
T15727 |
T15722 |
amod |
unpublished,data |
| R4439 |
T15728 |
T15722 |
punct |
),data |
| R4440 |
T15729 |
T15705 |
punct |
.,contains |
| R4441 |
T15731 |
T15732 |
nsubj |
We,characterized |
| R4442 |
T15732 |
T15733 |
ccomp |
characterized,is |
| R4443 |
T15734 |
T15732 |
prep |
in,characterized |
| R4444 |
T15735 |
T15734 |
pobj |
detail,in |
| R4445 |
T15736 |
T15737 |
det |
the,properties |
| R4446 |
T15737 |
T15732 |
dobj |
properties,characterized |
| R4447 |
T15738 |
T15737 |
prep |
of,properties |
| R4448 |
T15739 |
T15740 |
det |
this,vector |
| R4449 |
T15740 |
T15738 |
pobj |
vector,of |
| R4450 |
T15741 |
T15740 |
amod |
new,vector |
| R4451 |
T15742 |
T15732 |
advcl |
using,characterized |
| R4452 |
T15743 |
T15744 |
det |
a,gene |
| R4453 |
T15744 |
T15742 |
dobj |
gene,using |
| R4454 |
T15745 |
T15744 |
compound |
GFP,gene |
| R4455 |
T15746 |
T15744 |
compound |
target,gene |
| R4456 |
T15747 |
T15744 |
cc |
and,gene |
| R4457 |
T15748 |
T15744 |
conj |
FACS,gene |
| R4458 |
T15749 |
T15733 |
punct |
: ,is |
| R4459 |
T15750 |
T15733 |
nsubj |
Extinction,is |
| R4460 |
T15751 |
T15750 |
prep |
of,Extinction |
| R4461 |
T15752 |
T15753 |
compound |
target,genes |
| R4462 |
T15753 |
T15751 |
pobj |
genes,of |
| R4463 |
T15754 |
T15750 |
prep |
in,Extinction |
| R4464 |
T15755 |
T15756 |
compound |
ES,cells |
| R4465 |
T15756 |
T15754 |
pobj |
cells,in |
| R4466 |
T15757 |
T15758 |
advmod |
highly,efficient |
| R4467 |
T15758 |
T15733 |
acomp |
efficient,is |
| R4468 |
T15759 |
T15733 |
prep |
in,is |
| R4469 |
T15760 |
T15761 |
nummod |
70,% |
| R4470 |
T15761 |
T15759 |
pobj |
%,in |
| R4471 |
T15762 |
T15761 |
prep |
of,% |
| R4472 |
T15763 |
T15764 |
det |
the,cells |
| R4473 |
T15764 |
T15762 |
pobj |
cells,of |
| R4474 |
T15765 |
T15733 |
punct |
", ",is |
| R4475 |
T15766 |
T15733 |
conj |
of,is |
| R4476 |
T15767 |
T15768 |
amod |
intermediate,efficiency |
| R4477 |
T15768 |
T15766 |
pobj |
efficiency,of |
| R4478 |
T15769 |
T15766 |
prep |
in,of |
| R4479 |
T15770 |
T15771 |
nummod |
15,% |
| R4480 |
T15771 |
T15769 |
pobj |
%,in |
| R4481 |
T15772 |
T15766 |
punct |
", ",of |
| R4482 |
T15773 |
T15766 |
cc |
and,of |
| R4483 |
T15774 |
T15766 |
conj |
inefficient,of |
| R4484 |
T15775 |
T15774 |
prep |
in,inefficient |
| R4485 |
T15776 |
T15777 |
det |
the,% |
| R4486 |
T15777 |
T15775 |
pobj |
%,in |
| R4487 |
T15778 |
T15777 |
amod |
remaining,% |
| R4488 |
T15779 |
T15777 |
nummod |
15,% |
| R4489 |
T15780 |
T15777 |
prep |
of,% |
| R4490 |
T15781 |
T15782 |
compound |
cells,analysis |
| R4491 |
T15782 |
T15780 |
pobj |
analysis,of |
| R4492 |
T15783 |
T15733 |
punct |
.,is |
| R4493 |
T15785 |
T15786 |
det |
The,sequence |
| R4494 |
T15786 |
T15787 |
nsubjpass |
sequence,cloned |
| R4495 |
T15788 |
T15786 |
prep |
of,sequence |
| R4496 |
T15789 |
T15790 |
nmod |
p150CAF,duplex |
| R4497 |
T15790 |
T15788 |
pobj |
duplex,of |
| R4498 |
T15791 |
T15789 |
punct |
-,p150CAF |
| R4499 |
T15792 |
T15789 |
nummod |
1,p150CAF |
| R4500 |
T15793 |
T15790 |
nmod |
siRNA,duplex |
| R4501 |
T15794 |
T15793 |
punct |
(,siRNA |
| R4502 |
T15795 |
T15796 |
amod |
short,RNA |
| R4503 |
T15796 |
T15793 |
appos |
RNA,siRNA |
| R4504 |
T15797 |
T15796 |
amod |
interfering,RNA |
| R4505 |
T15798 |
T15790 |
punct |
),duplex |
| R4506 |
T15799 |
T15800 |
punct |
[,16 |
| R4507 |
T15800 |
T15786 |
parataxis |
16,sequence |
| R4508 |
T15801 |
T15800 |
punct |
],16 |
| R4509 |
T15802 |
T15787 |
auxpass |
was,cloned |
| R4510 |
T15803 |
T15787 |
prep |
into,cloned |
| R4511 |
T15804 |
T15805 |
det |
this,plasmid |
| R4512 |
T15805 |
T15803 |
pobj |
plasmid,into |
| R4513 |
T15806 |
T15787 |
punct |
.,cloned |
| R4514 |
T15808 |
T15809 |
det |
The,vector |
| R4515 |
T15809 |
T15811 |
nsubj |
vector,expressed |
| R4516 |
T15810 |
T15809 |
compound |
control,vector |
| R4517 |
T15812 |
T15813 |
det |
a,siRNA |
| R4518 |
T15813 |
T15811 |
dobj |
siRNA,expressed |
| R4519 |
T15814 |
T15815 |
dep |
that,targets |
| R4520 |
T15815 |
T15813 |
relcl |
targets,siRNA |
| R4521 |
T15816 |
T15817 |
compound |
GFP,degradation |
| R4522 |
T15817 |
T15815 |
dobj |
degradation,targets |
| R4523 |
T15818 |
T15817 |
compound |
RNA,degradation |
| R4524 |
T15819 |
T15811 |
punct |
.,expressed |
| R4525 |
T15821 |
T15822 |
compound |
ES,cells |
| R4526 |
T15822 |
T15823 |
nsubjpass |
cells,transfected |
| R4527 |
T15824 |
T15823 |
auxpass |
were,transfected |
| R4528 |
T15825 |
T15823 |
prep |
by,transfected |
| R4529 |
T15826 |
T15825 |
pobj |
electroporation,by |
| R4530 |
T15827 |
T15823 |
prep |
with,transfected |
| R4531 |
T15828 |
T15829 |
det |
the,vector |
| R4532 |
T15829 |
T15827 |
pobj |
vector,with |
| R4533 |
T15830 |
T15829 |
compound |
RNA,vector |
| R4534 |
T15831 |
T15829 |
compound |
plasmid,vector |
| R4535 |
T15832 |
T15823 |
punct |
", ",transfected |
| R4536 |
T15833 |
T15823 |
conj |
seeded,transfected |
| R4537 |
T15834 |
T15833 |
prep |
onto,seeded |
| R4538 |
T15835 |
T15836 |
npadvmod |
gelatin,coated |
| R4539 |
T15836 |
T15838 |
amod |
coated,slides |
| R4540 |
T15837 |
T15836 |
punct |
-,coated |
| R4541 |
T15838 |
T15834 |
pobj |
slides,onto |
| R4542 |
T15839 |
T15833 |
punct |
", ",seeded |
| R4543 |
T15840 |
T15833 |
cc |
and,seeded |
| R4544 |
T15841 |
T15833 |
conj |
cultured,seeded |
| R4545 |
T15842 |
T15841 |
prep |
for,cultured |
| R4546 |
T15843 |
T15844 |
nummod |
24,h |
| R4547 |
T15844 |
T15842 |
pobj |
h,for |
| R4548 |
T15845 |
T15841 |
prep |
in,cultured |
| R4549 |
T15846 |
T15847 |
det |
the,absence |
| R4550 |
T15847 |
T15845 |
pobj |
absence,in |
| R4551 |
T15848 |
T15847 |
prep |
of,absence |
| R4552 |
T15849 |
T15848 |
pobj |
selection,of |
| R4553 |
T15850 |
T15823 |
punct |
.,transfected |
| R4554 |
T15852 |
T15853 |
nsubjpass |
Puromycin,added |
| R4555 |
T15854 |
T15855 |
punct |
(,μg |
| R4556 |
T15855 |
T15852 |
parataxis |
μg,Puromycin |
| R4557 |
T15856 |
T15855 |
nummod |
2,μg |
| R4558 |
T15857 |
T15858 |
punct |
/,ml |
| R4559 |
T15858 |
T15855 |
prep |
ml,μg |
| R4560 |
T15859 |
T15855 |
punct |
),μg |
| R4561 |
T15860 |
T15853 |
auxpass |
was,added |
| R4562 |
T15861 |
T15853 |
prep |
to,added |
| R4563 |
T15862 |
T15863 |
det |
the,medium |
| R4564 |
T15863 |
T15861 |
pobj |
medium,to |
| R4565 |
T15864 |
T15863 |
compound |
culture,medium |
| R4566 |
T15865 |
T15853 |
cc |
and,added |
| R4567 |
T15866 |
T15867 |
nsubjpass |
cells,cultured |
| R4568 |
T15867 |
T15853 |
conj |
cultured,added |
| R4569 |
T15868 |
T15867 |
auxpass |
were,cultured |
| R4570 |
T15869 |
T15867 |
prep |
for,cultured |
| R4571 |
T15870 |
T15871 |
det |
an,period |
| R4572 |
T15871 |
T15869 |
pobj |
period,for |
| R4573 |
T15872 |
T15871 |
amod |
additional,period |
| R4574 |
T15873 |
T15874 |
nummod |
48,h |
| R4575 |
T15874 |
T15871 |
compound |
h,period |
| R4576 |
T15875 |
T15874 |
punct |
-,h |
| R4577 |
T15876 |
T15867 |
punct |
.,cultured |
| R4578 |
T15878 |
T15879 |
advcl |
Using,reveals |
| R4579 |
T15880 |
T15881 |
det |
the,vector |
| R4580 |
T15881 |
T15878 |
dobj |
vector,Using |
| R4581 |
T15882 |
T15881 |
nmod |
p150CAF,vector |
| R4582 |
T15883 |
T15882 |
punct |
-,p150CAF |
| R4583 |
T15884 |
T15882 |
nummod |
1,p150CAF |
| R4584 |
T15885 |
T15881 |
compound |
RNAi,vector |
| R4585 |
T15886 |
T15879 |
punct |
", ",reveals |
| R4586 |
T15887 |
T15888 |
compound |
IF,microscopy |
| R4587 |
T15888 |
T15889 |
compound |
microscopy,quantification |
| R4588 |
T15889 |
T15879 |
nsubj |
quantification,reveals |
| R4589 |
T15890 |
T15891 |
det |
a,depletion |
| R4590 |
T15891 |
T15879 |
dobj |
depletion,reveals |
| R4591 |
T15892 |
T15891 |
amod |
complete,depletion |
| R4592 |
T15893 |
T15891 |
nmod |
CAF,depletion |
| R4593 |
T15894 |
T15893 |
punct |
-,CAF |
| R4594 |
T15895 |
T15893 |
nummod |
1,CAF |
| R4595 |
T15896 |
T15879 |
prep |
in,reveals |
| R4596 |
T15897 |
T15898 |
amod |
most,cells |
| R4597 |
T15898 |
T15896 |
pobj |
cells,in |
| R4598 |
T15899 |
T15900 |
punct |
(,S1B |
| R4599 |
T15900 |
T15879 |
parataxis |
S1B,reveals |
| R4600 |
T15901 |
T15900 |
compound |
Figure,S1B |
| R4601 |
T15902 |
T15900 |
punct |
),S1B |
| R4602 |
T15903 |
T15879 |
punct |
.,reveals |
| R4603 |
T15905 |
T15906 |
compound |
Western,blot |
| R4604 |
T15906 |
T15907 |
compound |
blot,analysis |
| R4605 |
T15907 |
T15908 |
nsubj |
analysis,reveals |
| R4606 |
T15909 |
T15910 |
punct |
(,S1A |
| R4607 |
T15910 |
T15907 |
parataxis |
S1A,analysis |
| R4608 |
T15911 |
T15910 |
compound |
Figure,S1A |
| R4609 |
T15912 |
T15910 |
punct |
),S1A |
| R4610 |
T15913 |
T15914 |
amod |
residual,expression |
| R4611 |
T15914 |
T15908 |
dobj |
expression,reveals |
| R4612 |
T15915 |
T15914 |
nmod |
p150CAF,expression |
| R4613 |
T15916 |
T15915 |
punct |
-,p150CAF |
| R4614 |
T15917 |
T15915 |
nummod |
1,p150CAF |
| R4615 |
T15918 |
T15908 |
punct |
", ",reveals |
| R4616 |
T15919 |
T15920 |
mark |
as,expected |
| R4617 |
T15920 |
T15908 |
advcl |
expected,reveals |
| R4618 |
T15921 |
T15920 |
prep |
from,expected |
| R4619 |
T15922 |
T15923 |
det |
the,% |
| R4620 |
T15923 |
T15921 |
pobj |
%,from |
| R4621 |
T15924 |
T15923 |
nummod |
15,% |
| R4622 |
T15925 |
T15923 |
prep |
of,% |
| R4623 |
T15926 |
T15925 |
pobj |
cells,of |
| R4624 |
T15927 |
T15928 |
dep |
that,inhibit |
| R4625 |
T15928 |
T15923 |
relcl |
inhibit,% |
| R4626 |
T15929 |
T15928 |
aux |
do,inhibit |
| R4627 |
T15930 |
T15928 |
neg |
not,inhibit |
| R4628 |
T15931 |
T15932 |
det |
the,gene |
| R4629 |
T15932 |
T15928 |
dobj |
gene,inhibit |
| R4630 |
T15933 |
T15932 |
compound |
target,gene |
| R4631 |
T15934 |
T15908 |
punct |
.,reveals |
| R4632 |
T15936 |
T15937 |
nsubjpass |
MEFs,transfected |
| R4633 |
T15938 |
T15939 |
punct |
(,passage |
| R4634 |
T15939 |
T15936 |
parataxis |
passage,MEFs |
| R4635 |
T15940 |
T15939 |
nummod |
3,passage |
| R4636 |
T15941 |
T15939 |
punct |
", ",passage |
| R4637 |
T15942 |
T15943 |
nummod |
90,% |
| R4638 |
T15943 |
T15944 |
compound |
%,confluence |
| R4639 |
T15944 |
T15939 |
appos |
confluence,passage |
| R4640 |
T15945 |
T15939 |
punct |
),passage |
| R4641 |
T15946 |
T15937 |
auxpass |
were,transfected |
| R4642 |
T15947 |
T15937 |
prep |
during,transfected |
| R4643 |
T15948 |
T15949 |
nummod |
4,h |
| R4644 |
T15949 |
T15947 |
pobj |
h,during |
| R4645 |
T15950 |
T15949 |
prep |
with,h |
| R4646 |
T15951 |
T15952 |
det |
the,vector |
| R4647 |
T15952 |
T15950 |
pobj |
vector,with |
| R4648 |
T15953 |
T15952 |
compound |
RNAi,vector |
| R4649 |
T15954 |
T15952 |
compound |
plasmid,vector |
| R4650 |
T15955 |
T15937 |
advcl |
using,transfected |
| R4651 |
T15956 |
T15955 |
dobj |
Lipofectamine,using |
| R4652 |
T15957 |
T15956 |
nummod |
2000,Lipofectamine |
| R4653 |
T15958 |
T15959 |
punct |
(,Invitrogene |
| R4654 |
T15959 |
T15956 |
parataxis |
Invitrogene,Lipofectamine |
| R4655 |
T15960 |
T15959 |
punct |
", ",Invitrogene |
| R4656 |
T15961 |
T15959 |
npadvmod |
Carlsbad,Invitrogene |
| R4657 |
T15962 |
T15959 |
punct |
", ",Invitrogene |
| R4658 |
T15963 |
T15959 |
npadvmod |
California,Invitrogene |
| R4659 |
T15964 |
T15959 |
punct |
", ",Invitrogene |
| R4660 |
T15965 |
T15966 |
compound |
United,States |
| R4661 |
T15966 |
T15959 |
npadvmod |
States,Invitrogene |
| R4662 |
T15967 |
T15959 |
punct |
),Invitrogene |
| R4663 |
T15968 |
T15937 |
prep |
according,transfected |
| R4664 |
T15969 |
T15968 |
prep |
to,according |
| R4665 |
T15970 |
T15971 |
poss |
manufacturer,conditions |
| R4666 |
T15971 |
T15969 |
pobj |
conditions,to |
| R4667 |
T15972 |
T15970 |
case |
's,manufacturer |
| R4668 |
T15973 |
T15937 |
punct |
.,transfected |
| R4669 |
T15975 |
T15976 |
nsubjpass |
Cells,trypsinized |
| R4670 |
T15977 |
T15976 |
auxpass |
were,trypsinized |
| R4671 |
T15978 |
T15976 |
punct |
", ",trypsinized |
| R4672 |
T15979 |
T15976 |
conj |
plated,trypsinized |
| R4673 |
T15980 |
T15979 |
prep |
at,plated |
| R4674 |
T15981 |
T15982 |
quantmod |
1,3 |
| R4675 |
T15982 |
T15984 |
nummod |
3,dilution |
| R4676 |
T15983 |
T15982 |
punct |
/,3 |
| R4677 |
T15984 |
T15980 |
pobj |
dilution,at |
| R4678 |
T15985 |
T15979 |
punct |
", ",plated |
| R4679 |
T15986 |
T15979 |
cc |
and,plated |
| R4680 |
T15987 |
T15979 |
conj |
cultured,plated |
| R4681 |
T15988 |
T15987 |
prep |
for,cultured |
| R4682 |
T15989 |
T15990 |
nummod |
48,h |
| R4683 |
T15990 |
T15988 |
pobj |
h,for |
| R4684 |
T15991 |
T15987 |
prep |
in,cultured |
| R4685 |
T15992 |
T15993 |
det |
the,presence |
| R4686 |
T15993 |
T15991 |
pobj |
presence,in |
| R4687 |
T15994 |
T15993 |
prep |
of,presence |
| R4688 |
T15995 |
T15994 |
pobj |
puromycin,of |
| R4689 |
T15996 |
T15976 |
punct |
.,trypsinized |
| R4690 |
T16173 |
T16174 |
compound |
Cell,lines |
| R4691 |
T16175 |
T16174 |
punct |
.,lines |
| R4692 |
T16177 |
T16178 |
nmod |
AT,cells |
| R4693 |
T16178 |
T16182 |
nsubjpass |
cells,used |
| R4694 |
T16179 |
T16177 |
punct |
-,AT |
| R4695 |
T16180 |
T16177 |
nummod |
1,AT |
| R4696 |
T16181 |
T16178 |
compound |
ES,cells |
| R4697 |
T16183 |
T16184 |
punct |
[,42 |
| R4698 |
T16184 |
T16178 |
parataxis |
42,cells |
| R4699 |
T16185 |
T16184 |
punct |
],42 |
| R4700 |
T16186 |
T16187 |
punct |
(,gift |
| R4701 |
T16187 |
T16178 |
parataxis |
gift,cells |
| R4702 |
T16188 |
T16187 |
det |
a,gift |
| R4703 |
T16189 |
T16187 |
prep |
of,gift |
| R4704 |
T16190 |
T16191 |
compound |
M.,Vernet |
| R4705 |
T16191 |
T16189 |
pobj |
Vernet,of |
| R4706 |
T16192 |
T16187 |
punct |
),gift |
| R4707 |
T16193 |
T16182 |
auxpass |
were,used |
| R4708 |
T16194 |
T16182 |
prep |
for,used |
| R4709 |
T16195 |
T16196 |
compound |
gene,targeting |
| R4710 |
T16196 |
T16194 |
pobj |
targeting,for |
| R4711 |
T16197 |
T16182 |
punct |
.,used |
| R4712 |
T16199 |
T16200 |
compound |
LTM7,cells |
| R4713 |
T16200 |
T16202 |
nsubjpass |
cells,used |
| R4714 |
T16201 |
T16200 |
compound |
ES,cells |
| R4715 |
T16203 |
T16202 |
auxpass |
were,used |
| R4716 |
T16204 |
T16202 |
prep |
in,used |
| R4717 |
T16205 |
T16206 |
det |
all,experiments |
| R4718 |
T16206 |
T16204 |
pobj |
experiments,in |
| R4719 |
T16207 |
T16206 |
compound |
RNAi,experiments |
| R4720 |
T16208 |
T16202 |
punct |
.,used |
| R4721 |
T16210 |
T16211 |
nsubj |
We,derived |
| R4722 |
T16212 |
T16213 |
det |
this,line |
| R4723 |
T16213 |
T16211 |
dobj |
line,derived |
| R4724 |
T16214 |
T16213 |
compound |
cell,line |
| R4725 |
T16215 |
T16211 |
prep |
from,derived |
| R4726 |
T16216 |
T16217 |
punct |
(,C57BL |
| R4727 |
T16217 |
T16218 |
nmod |
C57BL,females |
| R4728 |
T16218 |
T16215 |
pobj |
females,from |
| R4729 |
T16219 |
T16217 |
punct |
/,C57BL |
| R4730 |
T16220 |
T16217 |
nummod |
6,C57BL |
| R4731 |
T16221 |
T16217 |
punct |
×,C57BL |
| R4732 |
T16222 |
T16217 |
appos |
129,C57BL |
| R4733 |
T16223 |
T16217 |
punct |
),C57BL |
| R4734 |
T16224 |
T16218 |
compound |
F1,females |
| R4735 |
T16225 |
T16218 |
acl |
bred,females |
| R4736 |
T16226 |
T16225 |
prep |
with,bred |
| R4737 |
T16227 |
T16228 |
compound |
C3H,HeJ |
| R4738 |
T16228 |
T16230 |
compound |
HeJ,males |
| R4739 |
T16229 |
T16228 |
punct |
/,HeJ |
| R4740 |
T16230 |
T16226 |
pobj |
males,with |
| R4741 |
T16231 |
T16211 |
punct |
.,derived |
| R4742 |
T16233 |
T16234 |
nsubj |
LTM7,are |
| R4743 |
T16235 |
T16236 |
compound |
XX,cells |
| R4744 |
T16236 |
T16234 |
attr |
cells,are |
| R4745 |
T16237 |
T16236 |
compound |
ES,cells |
| R4746 |
T16238 |
T16236 |
punct |
", ",cells |
| R4747 |
T16239 |
T16236 |
amod |
competent,cells |
| R4748 |
T16240 |
T16239 |
prep |
for,competent |
| R4749 |
T16241 |
T16242 |
compound |
germ,line |
| R4750 |
T16242 |
T16243 |
compound |
line,transmission |
| R4751 |
T16243 |
T16240 |
pobj |
transmission,for |
| R4752 |
T16244 |
T16234 |
punct |
.,are |
| R4753 |
T16246 |
T16247 |
amod |
Primary,MEFs |
| R4754 |
T16247 |
T16248 |
nsubjpass |
MEFs,derived |
| R4755 |
T16249 |
T16248 |
auxpass |
were,derived |
| R4756 |
T16250 |
T16248 |
prep |
from,derived |
| R4757 |
T16251 |
T16252 |
compound |
E13,embryos |
| R4758 |
T16252 |
T16250 |
pobj |
embryos,from |
| R4759 |
T16253 |
T16254 |
mark |
as,described |
| R4760 |
T16254 |
T16248 |
advcl |
described,derived |
| R4761 |
T16255 |
T16254 |
prep |
in,described |
| R4762 |
T16256 |
T16255 |
punct |
[,in |
| R4763 |
T16257 |
T16255 |
pobj |
43,in |
| R4764 |
T16258 |
T16248 |
punct |
],derived |
| R4765 |
T16259 |
T16248 |
punct |
.,derived |
| R4766 |
T16588 |
T16587 |
punct |
.,Immunofluorescence |
| R4767 |
T16590 |
T16591 |
nsubjpass |
Cells,fixed |
| R4768 |
T16592 |
T16591 |
auxpass |
were,fixed |
| R4769 |
T16593 |
T16591 |
prep |
for,fixed |
| R4770 |
T16594 |
T16595 |
nummod |
20,min |
| R4771 |
T16595 |
T16593 |
pobj |
min,for |
| R4772 |
T16596 |
T16591 |
prep |
in,fixed |
| R4773 |
T16597 |
T16596 |
pobj |
PBS,in |
| R4774 |
T16598 |
T16591 |
prep |
with,fixed |
| R4775 |
T16599 |
T16600 |
nummod |
4,% |
| R4776 |
T16600 |
T16601 |
compound |
%,paraformaldehyde |
| R4777 |
T16601 |
T16598 |
pobj |
paraformaldehyde,with |
| R4778 |
T16602 |
T16591 |
punct |
", ",fixed |
| R4779 |
T16603 |
T16591 |
cc |
and,fixed |
| R4780 |
T16604 |
T16605 |
nsubjpass |
immunodetection,performed |
| R4781 |
T16605 |
T16591 |
conj |
performed,fixed |
| R4782 |
T16606 |
T16605 |
auxpass |
was,performed |
| R4783 |
T16607 |
T16608 |
mark |
as,described |
| R4784 |
T16608 |
T16605 |
advcl |
described,performed |
| R4785 |
T16609 |
T16608 |
advmod |
previously,described |
| R4786 |
T16610 |
T16611 |
punct |
[,44 |
| R4787 |
T16611 |
T16605 |
parataxis |
44,performed |
| R4788 |
T16612 |
T16611 |
punct |
],44 |
| R4789 |
T16613 |
T16605 |
punct |
.,performed |
| R4790 |
T16615 |
T16616 |
compound |
E4,embryos |
| R4791 |
T16616 |
T16617 |
nsubjpass |
embryos,collected |
| R4792 |
T16618 |
T16617 |
auxpass |
were,collected |
| R4793 |
T16619 |
T16617 |
cc |
and,collected |
| R4794 |
T16620 |
T16617 |
conj |
treated,collected |
| R4795 |
T16621 |
T16620 |
prep |
with,treated |
| R4796 |
T16622 |
T16623 |
compound |
tyrode,acid |
| R4797 |
T16623 |
T16621 |
pobj |
acid,with |
| R4798 |
T16624 |
T16625 |
aux |
to,remove |
| R4799 |
T16625 |
T16620 |
advcl |
remove,treated |
| R4800 |
T16626 |
T16627 |
det |
the,pellucida |
| R4801 |
T16627 |
T16625 |
dobj |
pellucida,remove |
| R4802 |
T16628 |
T16627 |
compound |
zona,pellucida |
| R4803 |
T16629 |
T16620 |
punct |
", ",treated |
| R4804 |
T16630 |
T16620 |
conj |
deposited,treated |
| R4805 |
T16631 |
T16630 |
prep |
onto,deposited |
| R4806 |
T16632 |
T16633 |
compound |
microscope,slides |
| R4807 |
T16633 |
T16631 |
pobj |
slides,onto |
| R4808 |
T16634 |
T16630 |
punct |
", ",deposited |
| R4809 |
T16635 |
T16630 |
cc |
and,deposited |
| R4810 |
T16636 |
T16630 |
conj |
processed,deposited |
| R4811 |
T16637 |
T16636 |
prep |
for,processed |
| R4812 |
T16638 |
T16637 |
pobj |
immunostaining,for |
| R4813 |
T16639 |
T16640 |
mark |
as,described |
| R4814 |
T16640 |
T16636 |
advcl |
described,processed |
| R4815 |
T16641 |
T16640 |
prep |
for,described |
| R4816 |
T16642 |
T16643 |
compound |
ES,cells |
| R4817 |
T16643 |
T16641 |
pobj |
cells,for |
| R4818 |
T16644 |
T16617 |
punct |
.,collected |
| R4819 |
T16646 |
T16647 |
nsubjpass |
Antibodies,used |
| R4820 |
T16648 |
T16646 |
appos |
anti-HP1α,Antibodies |
| R4821 |
T16649 |
T16650 |
punct |
(,2HP1H5 |
| R4822 |
T16650 |
T16648 |
parataxis |
2HP1H5,anti-HP1α |
| R4823 |
T16651 |
T16650 |
punct |
", ",2HP1H5 |
| R4824 |
T16652 |
T16650 |
npadvmod |
Euromedex,2HP1H5 |
| R4825 |
T16653 |
T16650 |
punct |
", ",2HP1H5 |
| R4826 |
T16654 |
T16650 |
npadvmod |
France,2HP1H5 |
| R4827 |
T16655 |
T16650 |
punct |
),2HP1H5 |
| R4828 |
T16656 |
T16648 |
punct |
", ",anti-HP1α |
| R4829 |
T16657 |
T16648 |
conj |
anti-H4K20me3,anti-HP1α |
| R4830 |
T16658 |
T16659 |
punct |
(,Abcam |
| R4831 |
T16659 |
T16657 |
parataxis |
Abcam,anti-H4K20me3 |
| R4832 |
T16660 |
T16659 |
punct |
", ",Abcam |
| R4833 |
T16661 |
T16659 |
npadvmod |
Cambridge,Abcam |
| R4834 |
T16662 |
T16659 |
punct |
", ",Abcam |
| R4835 |
T16663 |
T16664 |
compound |
United,Kingdom |
| R4836 |
T16664 |
T16659 |
npadvmod |
Kingdom,Abcam |
| R4837 |
T16665 |
T16659 |
punct |
),Abcam |
| R4838 |
T16666 |
T16657 |
punct |
", ",anti-H4K20me3 |
| R4839 |
T16667 |
T16657 |
conj |
anti-BrdU,anti-H4K20me3 |
| R4840 |
T16668 |
T16669 |
punct |
(,DakoCytomation |
| R4841 |
T16669 |
T16667 |
parataxis |
DakoCytomation,anti-BrdU |
| R4842 |
T16670 |
T16669 |
punct |
", ",DakoCytomation |
| R4843 |
T16671 |
T16669 |
npadvmod |
Glostrup,DakoCytomation |
| R4844 |
T16672 |
T16669 |
punct |
", ",DakoCytomation |
| R4845 |
T16673 |
T16669 |
npadvmod |
Denmark,DakoCytomation |
| R4846 |
T16674 |
T16669 |
punct |
),DakoCytomation |
| R4847 |
T16675 |
T16667 |
punct |
", ",anti-BrdU |
| R4848 |
T16676 |
T16667 |
conj |
anti-PCNA,anti-BrdU |
| R4849 |
T16677 |
T16678 |
punct |
(,DakoCytomation |
| R4850 |
T16678 |
T16676 |
parataxis |
DakoCytomation,anti-PCNA |
| R4851 |
T16679 |
T16678 |
punct |
),DakoCytomation |
| R4852 |
T16680 |
T16676 |
punct |
", ",anti-PCNA |
| R4853 |
T16681 |
T16676 |
cc |
and,anti-PCNA |
| R4854 |
T16682 |
T16676 |
conj |
anti-PML,anti-PCNA |
| R4855 |
T16683 |
T16684 |
punct |
(,Biotechnology |
| R4856 |
T16684 |
T16682 |
parataxis |
Biotechnology,anti-PML |
| R4857 |
T16685 |
T16684 |
compound |
Upstate,Biotechnology |
| R4858 |
T16686 |
T16684 |
punct |
", ",Biotechnology |
| R4859 |
T16687 |
T16688 |
compound |
Lake,Placid |
| R4860 |
T16688 |
T16684 |
npadvmod |
Placid,Biotechnology |
| R4861 |
T16689 |
T16684 |
punct |
", ",Biotechnology |
| R4862 |
T16690 |
T16691 |
compound |
New,York |
| R4863 |
T16691 |
T16684 |
npadvmod |
York,Biotechnology |
| R4864 |
T16692 |
T16684 |
punct |
", ",Biotechnology |
| R4865 |
T16693 |
T16694 |
compound |
United,States |
| R4866 |
T16694 |
T16684 |
npadvmod |
States,Biotechnology |
| R4867 |
T16695 |
T16684 |
punct |
),Biotechnology |
| R4868 |
T16696 |
T16647 |
auxpass |
were,used |
| R4869 |
T16697 |
T16647 |
advmod |
all,used |
| R4870 |
T16698 |
T16647 |
prep |
at,used |
| R4871 |
T16699 |
T16700 |
nummod |
1,dilution |
| R4872 |
T16700 |
T16698 |
pobj |
dilution,at |
| R4873 |
T16701 |
T16702 |
punct |
/,1000 |
| R4874 |
T16702 |
T16699 |
prep |
1000,1 |
| R4875 |
T16703 |
T16647 |
punct |
.,used |
| R4876 |
T16705 |
T16706 |
nmod |
Antibodies,p150CAF1 |
| R4877 |
T16706 |
T16708 |
nsubjpass |
p150CAF1,used |
| R4878 |
T16707 |
T16706 |
amod |
anti-mouse,p150CAF1 |
| R4879 |
T16709 |
T16710 |
punct |
[,16 |
| R4880 |
T16710 |
T16706 |
parataxis |
16,p150CAF1 |
| R4881 |
T16711 |
T16710 |
punct |
],16 |
| R4882 |
T16712 |
T16706 |
cc |
and,p150CAF1 |
| R4883 |
T16713 |
T16706 |
conj |
anti-H3K9me3,p150CAF1 |
| R4884 |
T16714 |
T16715 |
punct |
(,Biotechnology |
| R4885 |
T16715 |
T16713 |
parataxis |
Biotechnology,anti-H3K9me3 |
| R4886 |
T16716 |
T16715 |
compound |
Upstate,Biotechnology |
| R4887 |
T16717 |
T16715 |
punct |
),Biotechnology |
| R4888 |
T16718 |
T16708 |
auxpass |
were,used |
| R4889 |
T16719 |
T16708 |
prep |
at,used |
| R4890 |
T16720 |
T16719 |
pobj |
1,at |
| R4891 |
T16721 |
T16722 |
punct |
/,250 |
| R4892 |
T16722 |
T16720 |
prep |
250,1 |
| R4893 |
T16723 |
T16720 |
cc |
and,1 |
| R4894 |
T16724 |
T16720 |
conj |
1,1 |
| R4895 |
T16725 |
T16726 |
punct |
/,500 |
| R4896 |
T16726 |
T16724 |
prep |
500,1 |
| R4897 |
T16727 |
T16708 |
punct |
", ",used |
| R4898 |
T16728 |
T16708 |
advmod |
respectively,used |
| R4899 |
T16729 |
T16708 |
punct |
.,used |
| R4900 |
T16731 |
T16732 |
det |
All,antibodies |
| R4901 |
T16732 |
T16734 |
nsubjpass |
antibodies,purchased |
| R4902 |
T16733 |
T16732 |
amod |
secondary,antibodies |
| R4903 |
T16735 |
T16734 |
auxpass |
were,purchased |
| R4904 |
T16736 |
T16734 |
prep |
from,purchased |
| R4905 |
T16737 |
T16738 |
compound |
Molecular,Probes |
| R4906 |
T16738 |
T16736 |
pobj |
Probes,from |
| R4907 |
T16739 |
T16740 |
punct |
(,Sunnyvale |
| R4908 |
T16740 |
T16738 |
parataxis |
Sunnyvale,Probes |
| R4909 |
T16741 |
T16740 |
punct |
", ",Sunnyvale |
| R4910 |
T16742 |
T16740 |
npadvmod |
California,Sunnyvale |
| R4911 |
T16743 |
T16740 |
punct |
", ",Sunnyvale |
| R4912 |
T16744 |
T16745 |
compound |
United,States |
| R4913 |
T16745 |
T16740 |
npadvmod |
States,Sunnyvale |
| R4914 |
T16746 |
T16740 |
punct |
),Sunnyvale |
| R4915 |
T16747 |
T16734 |
punct |
.,purchased |
| R4916 |
T16924 |
T16925 |
compound |
Western,blot |
| R4917 |
T16925 |
T16926 |
compound |
blot,analysis |
| R4918 |
T16927 |
T16926 |
punct |
.,analysis |
| R4919 |
T16929 |
T16930 |
nsubjpass |
Cells,lysed |
| R4920 |
T16931 |
T16930 |
auxpass |
were,lysed |
| R4921 |
T16932 |
T16930 |
prep |
in,lysed |
| R4922 |
T16933 |
T16934 |
compound |
Laemli,buffer |
| R4923 |
T16934 |
T16932 |
pobj |
buffer,in |
| R4924 |
T16935 |
T16930 |
cc |
and,lysed |
| R4925 |
T16936 |
T16930 |
conj |
run,lysed |
| R4926 |
T16937 |
T16936 |
prep |
onto,run |
| R4927 |
T16938 |
T16939 |
det |
a,gel |
| R4928 |
T16939 |
T16937 |
pobj |
gel,onto |
| R4929 |
T16940 |
T16941 |
nummod |
4,% |
| R4930 |
T16941 |
T16939 |
nmod |
%,gel |
| R4931 |
T16942 |
T16943 |
punct |
–,% |
| R4932 |
T16943 |
T16941 |
prep |
%,% |
| R4933 |
T16944 |
T16943 |
nummod |
12,% |
| R4934 |
T16945 |
T16939 |
compound |
SDS,gel |
| R4935 |
T16946 |
T16939 |
compound |
PAGE,gel |
| R4936 |
T16947 |
T16939 |
compound |
gradient,gel |
| R4937 |
T16948 |
T16930 |
punct |
.,lysed |
| R4938 |
T16950 |
T16951 |
nsubj |
We,used |
| R4939 |
T16952 |
T16951 |
dobj |
antibodies,used |
| R4940 |
T16953 |
T16952 |
prep |
against,antibodies |
| R4941 |
T16954 |
T16953 |
pobj |
p150CAF,against |
| R4942 |
T16955 |
T16954 |
punct |
-,p150CAF |
| R4943 |
T16956 |
T16954 |
nummod |
1,p150CAF |
| R4944 |
T16957 |
T16958 |
punct |
(,dilution |
| R4945 |
T16958 |
T16954 |
parataxis |
dilution,p150CAF |
| R4946 |
T16959 |
T16958 |
punct |
[,dilution |
| R4947 |
T16960 |
T16958 |
dep |
16,dilution |
| R4948 |
T16961 |
T16958 |
punct |
],dilution |
| R4949 |
T16962 |
T16958 |
punct |
;,dilution |
| R4950 |
T16963 |
T16958 |
npadvmod |
1,dilution |
| R4951 |
T16964 |
T16965 |
punct |
/,500 |
| R4952 |
T16965 |
T16963 |
prep |
500,1 |
| R4953 |
T16966 |
T16958 |
punct |
),dilution |
| R4954 |
T16967 |
T16954 |
punct |
", ",p150CAF |
| R4955 |
T16968 |
T16954 |
conj |
HP1α,p150CAF |
| R4956 |
T16969 |
T16970 |
punct |
(,1 |
| R4957 |
T16970 |
T16968 |
parataxis |
1,HP1α |
| R4958 |
T16971 |
T16970 |
dep |
2G9,1 |
| R4959 |
T16972 |
T16970 |
punct |
", ",1 |
| R4960 |
T16973 |
T16970 |
dep |
Euromedex,1 |
| R4961 |
T16974 |
T16970 |
punct |
;,1 |
| R4962 |
T16975 |
T16976 |
punct |
/,500 |
| R4963 |
T16976 |
T16970 |
prep |
500,1 |
| R4964 |
T16977 |
T16970 |
punct |
),1 |
| R4965 |
T16978 |
T16968 |
punct |
", ",HP1α |
| R4966 |
T16979 |
T16980 |
compound |
Histone,H3 |
| R4967 |
T16980 |
T16968 |
conj |
H3,HP1α |
| R4968 |
T16981 |
T16982 |
punct |
(,1 |
| R4969 |
T16982 |
T16980 |
parataxis |
1,H3 |
| R4970 |
T16983 |
T16982 |
dep |
Abcam,1 |
| R4971 |
T16984 |
T16982 |
punct |
;,1 |
| R4972 |
T16985 |
T16986 |
punct |
/,500 |
| R4973 |
T16986 |
T16982 |
prep |
500,1 |
| R4974 |
T16987 |
T16982 |
punct |
),1 |
| R4975 |
T16988 |
T16980 |
punct |
", ",H3 |
| R4976 |
T16989 |
T16980 |
conj |
H3K9me3,H3 |
| R4977 |
T16990 |
T16991 |
punct |
(,1 |
| R4978 |
T16991 |
T16989 |
parataxis |
1,H3K9me3 |
| R4979 |
T16992 |
T16991 |
dep |
Upstate,1 |
| R4980 |
T16993 |
T16991 |
punct |
;,1 |
| R4981 |
T16994 |
T16995 |
punct |
/,500 |
| R4982 |
T16995 |
T16991 |
prep |
500,1 |
| R4983 |
T16996 |
T16991 |
punct |
),1 |
| R4984 |
T16997 |
T16989 |
cc |
and,H3K9me3 |
| R4985 |
T16998 |
T16999 |
compound |
β,actin |
| R4986 |
T16999 |
T16989 |
conj |
actin,H3K9me3 |
| R4987 |
T17000 |
T16999 |
punct |
-,actin |
| R4988 |
T17001 |
T17002 |
punct |
(,1 |
| R4989 |
T17002 |
T16999 |
parataxis |
1,actin |
| R4990 |
T17003 |
T17002 |
dep |
Upstate,1 |
| R4991 |
T17004 |
T17002 |
punct |
;,1 |
| R4992 |
T17005 |
T17006 |
punct |
/,000 |
| R4993 |
T17006 |
T17002 |
prep |
000,1 |
| R4994 |
T17007 |
T17006 |
nummod |
40,000 |
| R4995 |
T17008 |
T17002 |
punct |
),1 |
| R4996 |
T17009 |
T16951 |
punct |
.,used |
| R4997 |
T17171 |
T17172 |
compound |
DNA,FISH |
| R4998 |
T17173 |
T17172 |
punct |
.,FISH |
| R4999 |
T17175 |
T17176 |
nsubjpass |
Probes,described |
| R5000 |
T17177 |
T17176 |
auxpass |
were,described |
| R5001 |
T17178 |
T17176 |
advmod |
previously,described |
| R5002 |
T17179 |
T17180 |
punct |
[,20 |
| R5003 |
T17180 |
T17176 |
parataxis |
20,described |
| R5004 |
T17181 |
T17180 |
punct |
],20 |
| R5005 |
T17182 |
T17176 |
punct |
.,described |
| R5006 |
T17184 |
T17185 |
nmod |
Biotin,dUTP |
| R5007 |
T17185 |
T17189 |
npadvmod |
dUTP,labeled |
| R5008 |
T17186 |
T17185 |
punct |
-,dUTP |
| R5009 |
T17187 |
T17185 |
nummod |
16,dUTP |
| R5010 |
T17188 |
T17185 |
punct |
-,dUTP |
| R5011 |
T17189 |
T17203 |
amod |
labeled,probes |
| R5012 |
T17190 |
T17185 |
cc |
or,dUTP |
| R5013 |
T17191 |
T17192 |
nmod |
Digoxigenin,dUTP |
| R5014 |
T17192 |
T17185 |
conj |
dUTP,dUTP |
| R5015 |
T17193 |
T17192 |
punct |
-,dUTP |
| R5016 |
T17194 |
T17192 |
nummod |
11,dUTP |
| R5017 |
T17195 |
T17192 |
punct |
-,dUTP |
| R5018 |
T17196 |
T17197 |
punct |
(,Roche |
| R5019 |
T17197 |
T17192 |
parataxis |
Roche,dUTP |
| R5020 |
T17198 |
T17197 |
punct |
", ",Roche |
| R5021 |
T17199 |
T17197 |
npadvmod |
Basel,Roche |
| R5022 |
T17200 |
T17197 |
punct |
", ",Roche |
| R5023 |
T17201 |
T17197 |
npadvmod |
Switzerland,Roche |
| R5024 |
T17202 |
T17197 |
punct |
),Roche |
| R5025 |
T17203 |
T17204 |
nsubjpass |
probes,generated |
| R5026 |
T17205 |
T17204 |
auxpass |
were,generated |
| R5027 |
T17206 |
T17204 |
prep |
by,generated |
| R5028 |
T17207 |
T17208 |
compound |
nick,translation |
| R5029 |
T17208 |
T17206 |
pobj |
translation,by |
| R5030 |
T17209 |
T17210 |
punct |
(,Roche |
| R5031 |
T17210 |
T17204 |
parataxis |
Roche,generated |
| R5032 |
T17211 |
T17210 |
punct |
),Roche |
| R5033 |
T17212 |
T17204 |
cc |
and,generated |
| R5034 |
T17213 |
T17214 |
nsubj |
FISH,performed |
| R5035 |
T17214 |
T17204 |
conj |
performed,generated |
| R5036 |
T17215 |
T17216 |
mark |
as,described |
| R5037 |
T17216 |
T17214 |
advcl |
described,performed |
| R5038 |
T17217 |
T17218 |
punct |
[,20 |
| R5039 |
T17218 |
T17214 |
parataxis |
20,performed |
| R5040 |
T17219 |
T17218 |
punct |
],20 |
| R5041 |
T17220 |
T17214 |
punct |
.,performed |
| R5042 |
T17222 |
T17223 |
compound |
Image,acquisition |
| R5043 |
T17223 |
T17224 |
nsubjpass |
acquisition,performed |
| R5044 |
T17225 |
T17224 |
auxpass |
was,performed |
| R5045 |
T17226 |
T17224 |
prep |
with,performed |
| R5046 |
T17227 |
T17228 |
det |
the,microscope |
| R5047 |
T17228 |
T17226 |
pobj |
microscope,with |
| R5048 |
T17229 |
T17230 |
compound |
Deltavision,RT |
| R5049 |
T17230 |
T17228 |
compound |
RT,microscope |
| R5050 |
T17231 |
T17232 |
punct |
(,objective |
| R5051 |
T17232 |
T17228 |
parataxis |
objective,microscope |
| R5052 |
T17233 |
T17232 |
dep |
100,objective |
| R5053 |
T17234 |
T17233 |
punct |
×,100 |
| R5054 |
T17235 |
T17232 |
punct |
", ",objective |
| R5055 |
T17236 |
T17232 |
nummod |
1.4,objective |
| R5056 |
T17237 |
T17232 |
compound |
NA,objective |
| R5057 |
T17238 |
T17232 |
punct |
),objective |
| R5058 |
T17239 |
T17224 |
punct |
", ",performed |
| R5059 |
T17240 |
T17241 |
nsubjpass |
images,deconvoluted |
| R5060 |
T17241 |
T17224 |
conj |
deconvoluted,performed |
| R5061 |
T17242 |
T17241 |
auxpass |
were,deconvoluted |
| R5062 |
T17243 |
T17241 |
punct |
", ",deconvoluted |
| R5063 |
T17244 |
T17241 |
cc |
and,deconvoluted |
| R5064 |
T17245 |
T17246 |
compound |
fluorescence,profiles |
| R5065 |
T17246 |
T17247 |
nsubj |
profiles,measured |
| R5066 |
T17247 |
T17241 |
conj |
measured,deconvoluted |
| R5067 |
T17248 |
T17247 |
prep |
along,measured |
| R5068 |
T17249 |
T17250 |
det |
an,line |
| R5069 |
T17250 |
T17248 |
pobj |
line,along |
| R5070 |
T17251 |
T17250 |
amod |
arbitrary,line |
| R5071 |
T17252 |
T17247 |
advcl |
using,measured |
| R5072 |
T17253 |
T17252 |
dobj |
SoftWorx,using |
| R5073 |
T17254 |
T17247 |
punct |
.,measured |
| R5074 |
T17929 |
T17930 |
compound |
Nuclei,preparation |
| R5075 |
T17931 |
T17930 |
punct |
", ",preparation |
| R5076 |
T17932 |
T17933 |
compound |
nuclease,digestion |
| R5077 |
T17933 |
T17930 |
conj |
digestion,preparation |
| R5078 |
T17934 |
T17933 |
punct |
", ",digestion |
| R5079 |
T17935 |
T17933 |
cc |
and,digestion |
| R5080 |
T17936 |
T17937 |
amod |
biochemical,analysis |
| R5081 |
T17937 |
T17933 |
conj |
analysis,digestion |
| R5082 |
T17938 |
T17937 |
prep |
of,analysis |
| R5083 |
T17939 |
T17938 |
pobj |
chromatin,of |
| R5084 |
T17940 |
T17937 |
punct |
.,analysis |
| R5085 |
T17942 |
T17943 |
compound |
ES,cells |
| R5086 |
T17943 |
T17944 |
nsubjpass |
cells,incubated |
| R5087 |
T17945 |
T17944 |
auxpass |
were,incubated |
| R5088 |
T17946 |
T17944 |
prep |
on,incubated |
| R5089 |
T17947 |
T17946 |
pobj |
ice,on |
| R5090 |
T17948 |
T17944 |
prep |
for,incubated |
| R5091 |
T17949 |
T17950 |
nummod |
10,min |
| R5092 |
T17950 |
T17948 |
pobj |
min,for |
| R5093 |
T17951 |
T17944 |
prep |
in,incubated |
| R5094 |
T17952 |
T17951 |
pobj |
buffer,in |
| R5095 |
T17953 |
T17952 |
nummod |
1,buffer |
| R5096 |
T17954 |
T17955 |
punct |
(,HCl |
| R5097 |
T17955 |
T17952 |
parataxis |
HCl,buffer |
| R5098 |
T17956 |
T17957 |
nummod |
15,mM |
| R5099 |
T17957 |
T17955 |
compound |
mM,HCl |
| R5100 |
T17958 |
T17955 |
compound |
Tris,HCl |
| R5101 |
T17959 |
T17955 |
punct |
-,HCl |
| R5102 |
T17960 |
T17961 |
punct |
[,pH |
| R5103 |
T17961 |
T17955 |
parataxis |
pH,HCl |
| R5104 |
T17962 |
T17961 |
nummod |
7.5,pH |
| R5105 |
T17963 |
T17961 |
punct |
],pH |
| R5106 |
T17964 |
T17955 |
punct |
", ",HCl |
| R5107 |
T17965 |
T17966 |
nummod |
0.3,M |
| R5108 |
T17966 |
T17967 |
compound |
M,sucrose |
| R5109 |
T17967 |
T17955 |
appos |
sucrose,HCl |
| R5110 |
T17968 |
T17955 |
punct |
", ",HCl |
| R5111 |
T17969 |
T17970 |
nummod |
60,mM |
| R5112 |
T17970 |
T17971 |
compound |
mM,KCl |
| R5113 |
T17971 |
T17955 |
appos |
KCl,HCl |
| R5114 |
T17972 |
T17955 |
punct |
", ",HCl |
| R5115 |
T17973 |
T17974 |
nummod |
15,mM |
| R5116 |
T17974 |
T17975 |
compound |
mM,NaCl |
| R5117 |
T17975 |
T17955 |
appos |
NaCl,HCl |
| R5118 |
T17976 |
T17955 |
punct |
", ",HCl |
| R5119 |
T17977 |
T17978 |
nummod |
5,mM |
| R5120 |
T17978 |
T17979 |
compound |
mM,MgCl2 |
| R5121 |
T17979 |
T17955 |
appos |
MgCl2,HCl |
| R5122 |
T17980 |
T17955 |
punct |
", ",HCl |
| R5123 |
T17981 |
T17982 |
nummod |
0.1,mM |
| R5124 |
T17982 |
T17983 |
compound |
mM,EGTA |
| R5125 |
T17983 |
T17955 |
appos |
EGTA,HCl |
| R5126 |
T17984 |
T17955 |
punct |
),HCl |
| R5127 |
T17985 |
T17952 |
prep |
with,buffer |
| R5128 |
T17986 |
T17987 |
nummod |
0.15,% |
| R5129 |
T17987 |
T17988 |
compound |
%,IGEPAL |
| R5130 |
T17988 |
T17985 |
pobj |
IGEPAL,with |
| R5131 |
T17989 |
T17990 |
punct |
(,Sigma |
| R5132 |
T17990 |
T17988 |
parataxis |
Sigma,IGEPAL |
| R5133 |
T17991 |
T17990 |
punct |
", ",Sigma |
| R5134 |
T17992 |
T17993 |
compound |
St.,Louis |
| R5135 |
T17993 |
T17990 |
npadvmod |
Louis,Sigma |
| R5136 |
T17994 |
T17990 |
punct |
", ",Sigma |
| R5137 |
T17995 |
T17990 |
npadvmod |
Missouri,Sigma |
| R5138 |
T17996 |
T17990 |
punct |
", ",Sigma |
| R5139 |
T17997 |
T17998 |
compound |
United,States |
| R5140 |
T17998 |
T17990 |
npadvmod |
States,Sigma |
| R5141 |
T17999 |
T17990 |
punct |
),Sigma |
| R5142 |
T18000 |
T17944 |
punct |
.,incubated |
| R5143 |
T18002 |
T18003 |
nsubjpass |
Nuclei,purified |
| R5144 |
T18004 |
T18003 |
auxpass |
were,purified |
| R5145 |
T18005 |
T18003 |
prep |
by,purified |
| R5146 |
T18006 |
T18005 |
pobj |
centrifugation,by |
| R5147 |
T18007 |
T18008 |
punct |
(,g |
| R5148 |
T18008 |
T18006 |
parataxis |
g,centrifugation |
| R5149 |
T18009 |
T18008 |
nummod |
"10,000",g |
| R5150 |
T18010 |
T18009 |
punct |
×,"10,000" |
| R5151 |
T18011 |
T18008 |
prep |
for,g |
| R5152 |
T18012 |
T18013 |
nummod |
30,min |
| R5153 |
T18013 |
T18011 |
pobj |
min,for |
| R5154 |
T18014 |
T18008 |
punct |
", ",g |
| R5155 |
T18015 |
T18008 |
prep |
at,g |
| R5156 |
T18016 |
T18017 |
nummod |
4,°C |
| R5157 |
T18017 |
T18015 |
pobj |
°C,at |
| R5158 |
T18018 |
T18008 |
punct |
),g |
| R5159 |
T18019 |
T18003 |
prep |
on,purified |
| R5160 |
T18020 |
T18021 |
compound |
sucrose,cushions |
| R5161 |
T18021 |
T18019 |
pobj |
cushions,on |
| R5162 |
T18022 |
T18023 |
punct |
(,buffer |
| R5163 |
T18023 |
T18021 |
parataxis |
buffer,cushions |
| R5164 |
T18024 |
T18023 |
nummod |
1,buffer |
| R5165 |
T18025 |
T18023 |
prep |
with,buffer |
| R5166 |
T18026 |
T18027 |
nummod |
1.2,M |
| R5167 |
T18027 |
T18028 |
compound |
M,sucrose |
| R5168 |
T18028 |
T18025 |
pobj |
sucrose,with |
| R5169 |
T18029 |
T18023 |
punct |
),buffer |
| R5170 |
T18030 |
T18003 |
cc |
and,purified |
| R5171 |
T18031 |
T18003 |
conj |
resuspended,purified |
| R5172 |
T18032 |
T18031 |
prep |
in,resuspended |
| R5173 |
T18033 |
T18034 |
compound |
nuclease,buffer |
| R5174 |
T18034 |
T18032 |
pobj |
buffer,in |
| R5175 |
T18035 |
T18036 |
punct |
(,HCl |
| R5176 |
T18036 |
T18034 |
parataxis |
HCl,buffer |
| R5177 |
T18037 |
T18038 |
nummod |
50,mM |
| R5178 |
T18038 |
T18036 |
compound |
mM,HCl |
| R5179 |
T18039 |
T18036 |
compound |
Tris,HCl |
| R5180 |
T18040 |
T18036 |
punct |
-,HCl |
| R5181 |
T18041 |
T18042 |
punct |
[,pH |
| R5182 |
T18042 |
T18036 |
parataxis |
pH,HCl |
| R5183 |
T18043 |
T18042 |
nummod |
7.5,pH |
| R5184 |
T18044 |
T18042 |
punct |
],pH |
| R5185 |
T18045 |
T18036 |
punct |
", ",HCl |
| R5186 |
T18046 |
T18047 |
nummod |
20,mM |
| R5187 |
T18047 |
T18048 |
compound |
mM,NaCl |
| R5188 |
T18048 |
T18036 |
appos |
NaCl,HCl |
| R5189 |
T18049 |
T18036 |
punct |
", ",HCl |
| R5190 |
T18050 |
T18051 |
nummod |
0.32,M |
| R5191 |
T18051 |
T18052 |
compound |
M,sucrose |
| R5192 |
T18052 |
T18036 |
appos |
sucrose,HCl |
| R5193 |
T18053 |
T18036 |
punct |
", ",HCl |
| R5194 |
T18054 |
T18055 |
nummod |
4,mM |
| R5195 |
T18055 |
T18056 |
compound |
mM,MgCl2 |
| R5196 |
T18056 |
T18036 |
appos |
MgCl2,HCl |
| R5197 |
T18057 |
T18036 |
punct |
", ",HCl |
| R5198 |
T18058 |
T18059 |
nummod |
1,mM |
| R5199 |
T18059 |
T18060 |
compound |
mM,CaCl2 |
| R5200 |
T18060 |
T18036 |
appos |
CaCl2,HCl |
| R5201 |
T18061 |
T18036 |
punct |
),HCl |
| R5202 |
T18062 |
T18003 |
punct |
.,purified |
| R5203 |
T18064 |
T18065 |
quantmod |
About,2.106 |
| R5204 |
T18065 |
T18066 |
nummod |
2.106,nuclei |
| R5205 |
T18066 |
T18067 |
nsubjpass |
nuclei,incubated |
| R5206 |
T18068 |
T18067 |
auxpass |
were,incubated |
| R5207 |
T18069 |
T18067 |
prep |
with,incubated |
| R5208 |
T18070 |
T18071 |
amod |
increasing,quantities |
| R5209 |
T18071 |
T18069 |
pobj |
quantities,with |
| R5210 |
T18072 |
T18071 |
prep |
of,quantities |
| R5211 |
T18073 |
T18072 |
pobj |
MNase,of |
| R5212 |
T18074 |
T18075 |
punct |
(,units |
| R5213 |
T18075 |
T18073 |
parataxis |
units,MNase |
| R5214 |
T18076 |
T18077 |
quantmod |
0.04,1.6 |
| R5215 |
T18077 |
T18075 |
nummod |
1.6,units |
| R5216 |
T18078 |
T18077 |
punct |
–,1.6 |
| R5217 |
T18079 |
T18075 |
punct |
),units |
| R5218 |
T18080 |
T18073 |
cc |
or,MNase |
| R5219 |
T18081 |
T18073 |
conj |
DNase,MNase |
| R5220 |
T18082 |
T18081 |
nummod |
I,DNase |
| R5221 |
T18083 |
T18084 |
punct |
(,units |
| R5222 |
T18084 |
T18081 |
parataxis |
units,DNase |
| R5223 |
T18085 |
T18086 |
quantmod |
0.25,16 |
| R5224 |
T18086 |
T18084 |
nummod |
16,units |
| R5225 |
T18087 |
T18086 |
punct |
–,16 |
| R5226 |
T18088 |
T18084 |
punct |
),units |
| R5227 |
T18089 |
T18067 |
punct |
.,incubated |
| R5228 |
T18091 |
T18092 |
compound |
Digestion,time |
| R5229 |
T18092 |
T18093 |
nsubj |
time,was |
| R5230 |
T18094 |
T18092 |
prep |
at,time |
| R5231 |
T18095 |
T18096 |
nummod |
37,°C |
| R5232 |
T18096 |
T18094 |
pobj |
°C,at |
| R5233 |
T18097 |
T18098 |
nummod |
10,min |
| R5234 |
T18098 |
T18093 |
attr |
min,was |
| R5235 |
T18099 |
T18093 |
prep |
for,was |
| R5236 |
T18100 |
T18099 |
pobj |
MNase,for |
| R5237 |
T18101 |
T18093 |
cc |
and,was |
| R5238 |
T18102 |
T18103 |
nummod |
2,min |
| R5239 |
T18103 |
T18093 |
conj |
min,was |
| R5240 |
T18104 |
T18103 |
prep |
for,min |
| R5241 |
T18105 |
T18104 |
pobj |
DNase,for |
| R5242 |
T18106 |
T18105 |
nummod |
I,DNase |
| R5243 |
T18107 |
T18093 |
punct |
.,was |
| R5244 |
T18109 |
T18110 |
nsubjpass |
Digestions,stopped |
| R5245 |
T18111 |
T18110 |
auxpass |
were,stopped |
| R5246 |
T18112 |
T18110 |
prep |
by,stopped |
| R5247 |
T18113 |
T18112 |
pcomp |
adding,by |
| R5248 |
T18114 |
T18113 |
dobj |
SDS,adding |
| R5249 |
T18115 |
T18113 |
prep |
to,adding |
| R5250 |
T18116 |
T18117 |
nummod |
1,% |
| R5251 |
T18117 |
T18115 |
pobj |
%,to |
| R5252 |
T18118 |
T18113 |
cc |
and,adding |
| R5253 |
T18119 |
T18113 |
conj |
EDTA,adding |
| R5254 |
T18120 |
T18119 |
prep |
to,EDTA |
| R5255 |
T18121 |
T18122 |
nummod |
50,mM |
| R5256 |
T18122 |
T18120 |
pobj |
mM,to |
| R5257 |
T18123 |
T18110 |
punct |
.,stopped |
| R5258 |
T18125 |
T18126 |
nsubjpass |
DNAs,prepared |
| R5259 |
T18127 |
T18126 |
auxpass |
were,prepared |
| R5260 |
T18128 |
T18126 |
prep |
by,prepared |
| R5261 |
T18129 |
T18130 |
compound |
proteinase,K |
| R5262 |
T18130 |
T18131 |
compound |
K,digestion |
| R5263 |
T18131 |
T18128 |
pobj |
digestion,by |
| R5264 |
T18132 |
T18131 |
acl |
followed,digestion |
| R5265 |
T18133 |
T18132 |
agent |
by,followed |
| R5266 |
T18134 |
T18135 |
compound |
phenol,chloroform |
| R5267 |
T18135 |
T18137 |
compound |
chloroform,extraction |
| R5268 |
T18136 |
T18135 |
punct |
-,chloroform |
| R5269 |
T18137 |
T18133 |
pobj |
extraction,by |
| R5270 |
T18138 |
T18137 |
cc |
and,extraction |
| R5271 |
T18139 |
T18140 |
compound |
isopropanol,precipitation |
| R5272 |
T18140 |
T18137 |
conj |
precipitation,extraction |
| R5273 |
T18141 |
T18126 |
punct |
.,prepared |
| R5274 |
T18143 |
T18144 |
aux |
To,test |
| R5275 |
T18144 |
T18145 |
advcl |
test,incubated |
| R5276 |
T18146 |
T18147 |
det |
the,association |
| R5277 |
T18147 |
T18144 |
dobj |
association,test |
| R5278 |
T18148 |
T18147 |
prep |
of,association |
| R5279 |
T18149 |
T18150 |
compound |
histone,H3 |
| R5280 |
T18150 |
T18148 |
pobj |
H3,of |
| R5281 |
T18151 |
T18147 |
prep |
with,association |
| R5282 |
T18152 |
T18151 |
pobj |
chromatin,with |
| R5283 |
T18153 |
T18144 |
prep |
in,test |
| R5284 |
T18154 |
T18155 |
nmod |
control,cells |
| R5285 |
T18155 |
T18153 |
pobj |
cells,in |
| R5286 |
T18156 |
T18154 |
cc |
and,control |
| R5287 |
T18157 |
T18158 |
npadvmod |
p150,depleted |
| R5288 |
T18158 |
T18154 |
conj |
depleted,control |
| R5289 |
T18159 |
T18158 |
punct |
-,depleted |
| R5290 |
T18160 |
T18145 |
punct |
", ",incubated |
| R5291 |
T18161 |
T18162 |
amod |
isolated,nuclei |
| R5292 |
T18162 |
T18145 |
nsubjpass |
nuclei,incubated |
| R5293 |
T18163 |
T18145 |
auxpass |
were,incubated |
| R5294 |
T18164 |
T18145 |
prep |
on,incubated |
| R5295 |
T18165 |
T18164 |
pobj |
ice,on |
| R5296 |
T18166 |
T18145 |
prep |
for,incubated |
| R5297 |
T18167 |
T18168 |
nummod |
30,min |
| R5298 |
T18168 |
T18166 |
pobj |
min,for |
| R5299 |
T18169 |
T18145 |
prep |
in,incubated |
| R5300 |
T18170 |
T18169 |
pobj |
buffer,in |
| R5301 |
T18171 |
T18170 |
nummod |
2,buffer |
| R5302 |
T18172 |
T18173 |
punct |
(,Hepes |
| R5303 |
T18173 |
T18170 |
parataxis |
Hepes,buffer |
| R5304 |
T18174 |
T18175 |
nummod |
50,mM |
| R5305 |
T18175 |
T18173 |
compound |
mM,Hepes |
| R5306 |
T18176 |
T18177 |
punct |
[,pH7.9 |
| R5307 |
T18177 |
T18173 |
parataxis |
pH7.9,Hepes |
| R5308 |
T18178 |
T18177 |
punct |
],pH7.9 |
| R5309 |
T18179 |
T18173 |
punct |
", ",Hepes |
| R5310 |
T18180 |
T18181 |
nummod |
20,% |
| R5311 |
T18181 |
T18182 |
compound |
%,Glycerol |
| R5312 |
T18182 |
T18173 |
appos |
Glycerol,Hepes |
| R5313 |
T18183 |
T18173 |
punct |
", ",Hepes |
| R5314 |
T18184 |
T18185 |
nummod |
3,mM |
| R5315 |
T18185 |
T18186 |
compound |
mM,MgCl2 |
| R5316 |
T18186 |
T18173 |
appos |
MgCl2,Hepes |
| R5317 |
T18187 |
T18173 |
punct |
", ",Hepes |
| R5318 |
T18188 |
T18189 |
nummod |
0.1,% |
| R5319 |
T18189 |
T18190 |
compound |
%,IGEPAL |
| R5320 |
T18190 |
T18173 |
appos |
IGEPAL,Hepes |
| R5321 |
T18191 |
T18173 |
punct |
", ",Hepes |
| R5322 |
T18192 |
T18193 |
nummod |
0.5,mM |
| R5323 |
T18193 |
T18194 |
compound |
mM,DTT |
| R5324 |
T18194 |
T18173 |
appos |
DTT,Hepes |
| R5325 |
T18195 |
T18173 |
punct |
", ",Hepes |
| R5326 |
T18196 |
T18197 |
nummod |
0.5,mM |
| R5327 |
T18197 |
T18198 |
compound |
mM,PMSF |
| R5328 |
T18198 |
T18173 |
appos |
PMSF,Hepes |
| R5329 |
T18199 |
T18173 |
punct |
),Hepes |
| R5330 |
T18200 |
T18170 |
acl |
supplemented,buffer |
| R5331 |
T18201 |
T18200 |
prep |
with,supplemented |
| R5332 |
T18202 |
T18203 |
preconj |
either,M |
| R5333 |
T18203 |
T18205 |
nmod |
M,NaCl |
| R5334 |
T18204 |
T18203 |
nummod |
0.1,M |
| R5335 |
T18205 |
T18201 |
pobj |
NaCl,with |
| R5336 |
T18206 |
T18203 |
punct |
", ",M |
| R5337 |
T18207 |
T18208 |
nummod |
0.3,M |
| R5338 |
T18208 |
T18203 |
conj |
M,M |
| R5339 |
T18209 |
T18208 |
punct |
", ",M |
| R5340 |
T18210 |
T18211 |
nummod |
0.45,M |
| R5341 |
T18211 |
T18208 |
conj |
M,M |
| R5342 |
T18212 |
T18211 |
punct |
", ",M |
| R5343 |
T18213 |
T18214 |
nummod |
0.7,M |
| R5344 |
T18214 |
T18211 |
conj |
M,M |
| R5345 |
T18215 |
T18214 |
punct |
", ",M |
| R5346 |
T18216 |
T18214 |
cc |
or,M |
| R5347 |
T18217 |
T18218 |
nummod |
1,M |
| R5348 |
T18218 |
T18214 |
conj |
M,M |
| R5349 |
T18219 |
T18145 |
punct |
.,incubated |
| R5350 |
T18221 |
T18222 |
prep |
After,analyzed |
| R5351 |
T18223 |
T18221 |
pobj |
centrifugation,After |
| R5352 |
T18224 |
T18223 |
prep |
at,centrifugation |
| R5353 |
T18225 |
T18226 |
nummod |
"15,000",g |
| R5354 |
T18226 |
T18224 |
pobj |
g,at |
| R5355 |
T18227 |
T18222 |
punct |
", ",analyzed |
| R5356 |
T18228 |
T18222 |
nsubjpass |
pellets,analyzed |
| R5357 |
T18229 |
T18228 |
cc |
and,pellets |
| R5358 |
T18230 |
T18228 |
conj |
supernants,pellets |
| R5359 |
T18231 |
T18222 |
auxpass |
were,analyzed |
| R5360 |
T18232 |
T18222 |
prep |
by,analyzed |
| R5361 |
T18233 |
T18234 |
compound |
Western,blot |
| R5362 |
T18234 |
T18232 |
pobj |
blot,by |
| R5363 |
T18235 |
T18222 |
advcl |
using,analyzed |
| R5364 |
T18236 |
T18237 |
det |
a,antibody |
| R5365 |
T18237 |
T18235 |
dobj |
antibody,using |
| R5366 |
T18238 |
T18239 |
compound |
histone,H3 |
| R5367 |
T18239 |
T18237 |
compound |
H3,antibody |
| R5368 |
T18240 |
T18241 |
punct |
(,Abcam |
| R5369 |
T18241 |
T18237 |
parataxis |
Abcam,antibody |
| R5370 |
T18242 |
T18241 |
punct |
),Abcam |
| R5371 |
T18243 |
T18222 |
punct |
.,analyzed |
| R5372 |
T18632 |
T18631 |
punct |
.,ChIP |
| R5373 |
T18634 |
T18635 |
nsubj |
We,prepared |
| R5374 |
T18636 |
T18637 |
amod |
native,fragments |
| R5375 |
T18637 |
T18635 |
dobj |
fragments,prepared |
| R5376 |
T18638 |
T18637 |
compound |
chromatin,fragments |
| R5377 |
T18639 |
T18637 |
prep |
of,fragments |
| R5378 |
T18640 |
T18641 |
quantmod |
two,six |
| R5379 |
T18641 |
T18643 |
nummod |
six,nucleosomes |
| R5380 |
T18642 |
T18641 |
quantmod |
to,six |
| R5381 |
T18643 |
T18639 |
pobj |
nucleosomes,of |
| R5382 |
T18644 |
T18643 |
prep |
in,nucleosomes |
| R5383 |
T18645 |
T18644 |
pobj |
length,in |
| R5384 |
T18646 |
T18647 |
mark |
as,described |
| R5385 |
T18647 |
T18635 |
advcl |
described,prepared |
| R5386 |
T18648 |
T18649 |
punct |
[,28 |
| R5387 |
T18649 |
T18635 |
parataxis |
28,prepared |
| R5388 |
T18650 |
T18649 |
punct |
],28 |
| R5389 |
T18651 |
T18635 |
punct |
.,prepared |
| R5390 |
T18653 |
T18654 |
nummod |
5,μg |
| R5391 |
T18654 |
T18655 |
nsubjpass |
μg,incubated |
| R5392 |
T18656 |
T18654 |
prep |
of,μg |
| R5393 |
T18657 |
T18656 |
pobj |
chromatin,of |
| R5394 |
T18658 |
T18655 |
auxpass |
were,incubated |
| R5395 |
T18659 |
T18655 |
advmod |
overnight,incubated |
| R5396 |
T18660 |
T18655 |
prep |
with,incubated |
| R5397 |
T18661 |
T18662 |
nummod |
10,μl |
| R5398 |
T18662 |
T18660 |
pobj |
μl,with |
| R5399 |
T18663 |
T18662 |
prep |
of,μl |
| R5400 |
T18664 |
T18665 |
amod |
commercial,antibodies |
| R5401 |
T18665 |
T18663 |
pobj |
antibodies,of |
| R5402 |
T18666 |
T18655 |
punct |
.,incubated |
| R5403 |
T18668 |
T18669 |
prep |
After,purified |
| R5404 |
T18670 |
T18668 |
pobj |
incubation,After |
| R5405 |
T18671 |
T18670 |
prep |
with,incubation |
| R5406 |
T18672 |
T18673 |
compound |
protein,G |
| R5407 |
T18673 |
T18675 |
compound |
G,sepharose |
| R5408 |
T18674 |
T18673 |
punct |
-,G |
| R5409 |
T18675 |
T18671 |
pobj |
sepharose,with |
| R5410 |
T18676 |
T18670 |
cc |
and,incubation |
| R5411 |
T18677 |
T18678 |
nummod |
three,washes |
| R5412 |
T18678 |
T18670 |
conj |
washes,incubation |
| R5413 |
T18679 |
T18669 |
punct |
", ",purified |
| R5414 |
T18680 |
T18681 |
amod |
immunoprecipitated,DNA |
| R5415 |
T18681 |
T18669 |
nsubjpass |
DNA,purified |
| R5416 |
T18682 |
T18669 |
auxpass |
was,purified |
| R5417 |
T18683 |
T18669 |
punct |
", ",purified |
| R5418 |
T18684 |
T18669 |
conj |
sized,purified |
| R5419 |
T18685 |
T18684 |
prep |
onto,sized |
| R5420 |
T18686 |
T18687 |
det |
an,gel |
| R5421 |
T18687 |
T18685 |
pobj |
gel,onto |
| R5422 |
T18688 |
T18687 |
compound |
agarose,gel |
| R5423 |
T18689 |
T18684 |
punct |
", ",sized |
| R5424 |
T18690 |
T18684 |
cc |
and,sized |
| R5425 |
T18691 |
T18684 |
conj |
analyzed,sized |
| R5426 |
T18692 |
T18691 |
prep |
by,analyzed |
| R5427 |
T18693 |
T18694 |
compound |
Southern,blot |
| R5428 |
T18694 |
T18692 |
pobj |
blot,by |
| R5429 |
T18695 |
T18669 |
punct |
.,purified |
| R5430 |
T18697 |
T18698 |
compound |
Hybridization,signals |
| R5431 |
T18698 |
T18699 |
nsubjpass |
signals,quantified |
| R5432 |
T18700 |
T18699 |
auxpass |
were,quantified |
| R5433 |
T18701 |
T18699 |
advcl |
using,quantified |
| R5434 |
T18702 |
T18703 |
det |
an,Imager |
| R5435 |
T18703 |
T18701 |
dobj |
Imager,using |
| R5436 |
T18704 |
T18703 |
compound |
Instant,Imager |
| R5437 |
T18705 |
T18706 |
punct |
(,PerkinElmer |
| R5438 |
T18706 |
T18703 |
parataxis |
PerkinElmer,Imager |
| R5439 |
T18707 |
T18706 |
punct |
", ",PerkinElmer |
| R5440 |
T18708 |
T18706 |
npadvmod |
Wellesley,PerkinElmer |
| R5441 |
T18709 |
T18706 |
punct |
", ",PerkinElmer |
| R5442 |
T18710 |
T18706 |
npadvmod |
California,PerkinElmer |
| R5443 |
T18711 |
T18706 |
punct |
", ",PerkinElmer |
| R5444 |
T18712 |
T18713 |
compound |
United,States |
| R5445 |
T18713 |
T18706 |
npadvmod |
States,PerkinElmer |
| R5446 |
T18714 |
T18706 |
punct |
),PerkinElmer |
| R5447 |
T18715 |
T18699 |
punct |
.,quantified |
| R5448 |
T18717 |
T18718 |
nsubjpass |
Antibodies,purchased |
| R5449 |
T18719 |
T18717 |
amod |
specific,Antibodies |
| R5450 |
T18720 |
T18717 |
prep |
for,Antibodies |
| R5451 |
T18721 |
T18720 |
pobj |
H4K20me3,for |
| R5452 |
T18722 |
T18718 |
auxpass |
were,purchased |
| R5453 |
T18723 |
T18718 |
prep |
from,purchased |
| R5454 |
T18724 |
T18723 |
pobj |
Abcam,from |
| R5455 |
T18725 |
T18718 |
punct |
.,purchased |
| R5456 |
T18727 |
T18728 |
nsubjpass |
Antibodies,purchased |
| R5457 |
T18729 |
T18727 |
prep |
for,Antibodies |
| R5458 |
T18730 |
T18729 |
pobj |
H3K9me3,for |
| R5459 |
T18731 |
T18728 |
auxpass |
were,purchased |
| R5460 |
T18732 |
T18728 |
prep |
from,purchased |
| R5461 |
T18733 |
T18734 |
preconj |
both,Abcam |
| R5462 |
T18734 |
T18732 |
pobj |
Abcam,from |
| R5463 |
T18735 |
T18734 |
cc |
and,Abcam |
| R5464 |
T18736 |
T18737 |
compound |
Upstate,Biotechnology |
| R5465 |
T18737 |
T18734 |
conj |
Biotechnology,Abcam |
| R5466 |
T18738 |
T18728 |
cc |
and,purchased |
| R5467 |
T18739 |
T18728 |
conj |
gave,purchased |
| R5468 |
T18740 |
T18741 |
amod |
similar,results |
| R5469 |
T18741 |
T18739 |
dobj |
results,gave |
| R5470 |
T18742 |
T18728 |
punct |
.,purchased |
| R5471 |
T18744 |
T18745 |
prep |
For,used |
| R5472 |
T18746 |
T18747 |
compound |
Southern,blot |
| R5473 |
T18747 |
T18748 |
compound |
blot,analysis |
| R5474 |
T18748 |
T18744 |
pobj |
analysis,For |
| R5475 |
T18749 |
T18745 |
punct |
", ",used |
| R5476 |
T18750 |
T18745 |
nsubj |
we,used |
| R5477 |
T18751 |
T18752 |
det |
a,fragment |
| R5478 |
T18752 |
T18745 |
dobj |
fragment,used |
| R5479 |
T18753 |
T18754 |
nummod |
240,bp |
| R5480 |
T18754 |
T18752 |
compound |
bp,fragment |
| R5481 |
T18755 |
T18754 |
punct |
-,bp |
| R5482 |
T18756 |
T18757 |
compound |
EcoRI,BamHI |
| R5483 |
T18757 |
T18752 |
compound |
BamHI,fragment |
| R5484 |
T18758 |
T18757 |
punct |
/,BamHI |
| R5485 |
T18759 |
T18752 |
prep |
from,fragment |
| R5486 |
T18760 |
T18759 |
pobj |
pSAT,from |
| R5487 |
T18761 |
T18762 |
punct |
(,probe |
| R5488 |
T18762 |
T18760 |
parataxis |
probe,pSAT |
| R5489 |
T18763 |
T18762 |
amod |
major,probe |
| R5490 |
T18764 |
T18762 |
compound |
satellite,probe |
| R5491 |
T18765 |
T18762 |
punct |
),probe |
| R5492 |
T18766 |
T18767 |
punct |
[,45 |
| R5493 |
T18767 |
T18752 |
parataxis |
45,fragment |
| R5494 |
T18768 |
T18769 |
punct |
–,47 |
| R5495 |
T18769 |
T18767 |
prep |
47,45 |
| R5496 |
T18770 |
T18767 |
punct |
],45 |
| R5497 |
T18771 |
T18752 |
cc |
and,fragment |
| R5498 |
T18772 |
T18773 |
det |
a,fragment |
| R5499 |
T18773 |
T18752 |
conj |
fragment,fragment |
| R5500 |
T18774 |
T18775 |
nummod |
360,bp |
| R5501 |
T18775 |
T18773 |
compound |
bp,fragment |
| R5502 |
T18776 |
T18775 |
punct |
-,bp |
| R5503 |
T18777 |
T18778 |
compound |
EcoRI,HindIII |
| R5504 |
T18778 |
T18773 |
compound |
HindIII,fragment |
| R5505 |
T18779 |
T18778 |
punct |
/,HindIII |
| R5506 |
T18780 |
T18773 |
prep |
from,fragment |
| R5507 |
T18781 |
T18780 |
pobj |
R198,from |
| R5508 |
T18782 |
T18773 |
punct |
", ",fragment |
| R5509 |
T18783 |
T18773 |
acl |
corresponding,fragment |
| R5510 |
T18784 |
T18783 |
prep |
to,corresponding |
| R5511 |
T18785 |
T18786 |
nummod |
three,copies |
| R5512 |
T18786 |
T18784 |
pobj |
copies,to |
| R5513 |
T18787 |
T18786 |
prep |
of,copies |
| R5514 |
T18788 |
T18789 |
det |
the,repeat |
| R5515 |
T18789 |
T18787 |
pobj |
repeat,of |
| R5516 |
T18790 |
T18791 |
nummod |
120,bp |
| R5517 |
T18791 |
T18789 |
nmod |
bp,repeat |
| R5518 |
T18792 |
T18791 |
punct |
-,bp |
| R5519 |
T18793 |
T18794 |
amod |
minor,satellite |
| R5520 |
T18794 |
T18789 |
compound |
satellite,repeat |
| R5521 |
T18795 |
T18796 |
punct |
[,49 |
| R5522 |
T18796 |
T18783 |
parataxis |
49,corresponding |
| R5523 |
T18797 |
T18796 |
punct |
],49 |
| R5524 |
T18798 |
T18745 |
punct |
.,used |
| R5525 |
T18800 |
T18801 |
nsubjpass |
Probes,described |
| R5526 |
T18802 |
T18800 |
acl |
used,Probes |
| R5527 |
T18803 |
T18802 |
prep |
in,used |
| R5528 |
T18804 |
T18805 |
compound |
FISH,experiments |
| R5529 |
T18805 |
T18803 |
pobj |
experiments,in |
| R5530 |
T18806 |
T18801 |
auxpass |
were,described |
| R5531 |
T18807 |
T18801 |
prep |
in,described |
| R5532 |
T18808 |
T18807 |
punct |
[,in |
| R5533 |
T18809 |
T18807 |
pobj |
46,in |
| R5534 |
T18810 |
T18811 |
punct |
–,48 |
| R5535 |
T18811 |
T18809 |
prep |
48,46 |
| R5536 |
T18812 |
T18801 |
punct |
],described |
| R5537 |
T18813 |
T18801 |
punct |
.,described |
| R5538 |
T18815 |
T18816 |
det |
The,probe |
| R5539 |
T18816 |
T18817 |
nsubjpass |
probe,described |
| R5540 |
T18818 |
T18816 |
prep |
for,probe |
| R5541 |
T18819 |
T18820 |
compound |
IAP,elements |
| R5542 |
T18820 |
T18818 |
pobj |
elements,for |
| R5543 |
T18821 |
T18817 |
auxpass |
was,described |
| R5544 |
T18822 |
T18817 |
prep |
in,described |
| R5545 |
T18823 |
T18822 |
punct |
[,in |
| R5546 |
T18824 |
T18822 |
pobj |
50,in |
| R5547 |
T18825 |
T18817 |
punct |
],described |
| R5548 |
T18826 |
T18817 |
punct |
.,described |
| R2936 |
T10332 |
T10327 |
punct |
", ",detected |
| R2938 |
T10333 |
T10334 |
amod |
residual,epitopes |
| R2940 |
T10334 |
T10327 |
nsubjpass |
epitopes,detected |
| R2941 |
T10335 |
T10334 |
compound |
H4K20me3,epitopes |
| R2942 |
T10336 |
T10327 |
auxpass |
were,detected |
| R2944 |
T10337 |
T10327 |
prep |
at,detected |
| R2945 |
T10338 |
T10339 |
det |
the,level |
| R2947 |
T10339 |
T10337 |
pobj |
level,at |
| R2948 |
T10340 |
T10339 |
prep |
of,level |
| R2949 |
T10341 |
T10342 |
amod |
relocated,material |
| R2951 |
T10342 |
T10340 |
pobj |
material,of |
| R2952 |
T10343 |
T10344 |
npadvmod |
DAPI,dense |
| R2953 |
T10344 |
T10342 |
amod |
dense,material |
| R2954 |
T10345 |
T10344 |
punct |
-,dense |
| R2956 |
T10346 |
T10327 |
punct |
.,detected |
| R2957 |
T10348 |
T10349 |
advmod |
Altogether,show |
| R2959 |
T10350 |
T10349 |
punct |
", ",show |
| R2960 |
T10351 |
T10352 |
poss |
our,results |
| R2961 |
T10352 |
T10349 |
nsubj |
results,show |
| R2962 |
T10353 |
T10354 |
mark |
that,leads |
| R2963 |
T10354 |
T10349 |
ccomp |
leads,show |
| R2964 |
T10355 |
T10354 |
nsubj |
depletion,leads |
| R2966 |
T10356 |
T10355 |
prep |
of,depletion |
| R2967 |
T10357 |
T10356 |
pobj |
CAF,of |
| R2968 |
T10358 |
T10357 |
punct |
-,CAF |
| R2970 |
T10359 |
T10357 |
nummod |
1,CAF |
| R2971 |
T10360 |
T10355 |
prep |
in,depletion |