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Id Subject Object Predicate Lexical cue
T808 6-8 VBZ denotes Is
T809 0-82 sentence denotes CAF-1 Is Essential for Heterochromatin Organization in Pluripotent Embryonic Cells
T810 3-4 HYPH denotes -
T811 4-5 CD denotes 1
T812 9-18 JJ denotes Essential
T813 19-22 IN denotes for
T814 23-38 NN denotes Heterochromatin
T815 39-51 NN denotes Organization
T816 52-54 IN denotes in
T817 55-66 JJ denotes Pluripotent
T818 77-82 NNS denotes Cells
T819 67-76 JJ denotes Embryonic
T820 82-83 sentence denotes
T821 129-240 sentence denotes During mammalian development, chromatin dynamics and epigenetic marking are important for genome reprogramming.
T822 129-135 IN denotes During
T823 201-204 VBP denotes are
T824 136-145 JJ denotes mammalian
T825 146-157 NN denotes development
T826 157-159 , denotes ,
T827 159-168 NN denotes chromatin
T828 169-177 NNS denotes dynamics
T829 178-181 CC denotes and
T830 182-192 JJ denotes epigenetic
T831 193-200 NN denotes marking
T832 205-214 JJ denotes important
T833 215-218 IN denotes for
T834 219-225 NN denotes genome
T835 226-239 NN denotes reprogramming
T836 239-240 . denotes .
T837 240-332 sentence denotes Recent data suggest an important role for the chromatin assembly machinery in this process.
T838 241-247 JJ denotes Recent
T839 248-252 NNS denotes data
T840 253-260 VBP denotes suggest
T841 261-263 DT denotes an
T842 274-278 NN denotes role
T843 264-273 JJ denotes important
T844 279-282 IN denotes for
T845 283-286 DT denotes the
T846 306-315 NN denotes machinery
T847 287-296 NN denotes chromatin
T848 297-305 NN denotes assembly
T849 316-318 IN denotes in
T850 319-323 DT denotes this
T851 324-331 NN denotes process
T852 331-332 . denotes .
T853 332-534 sentence denotes To analyze the role of chromatin assembly factor 1 (CAF-1) during pre-implantation development, we generated a mouse line carrying a targeted mutation in the gene encoding its large subunit, p150CAF-1.
T854 333-335 TO denotes To
T855 336-343 VB denotes analyze
T856 432-441 VBD denotes generated
T857 344-347 DT denotes the
T858 348-352 NN denotes role
T859 353-355 IN denotes of
T860 356-365 NN denotes chromatin
T861 366-374 NN denotes assembly
T862 375-381 NN denotes factor
T863 382-383 CD denotes 1
T864 384-385 -LRB- denotes (
T865 385-388 NN denotes CAF
T866 388-389 HYPH denotes -
T867 389-390 CD denotes 1
T868 390-391 -RRB- denotes )
T869 392-398 IN denotes during
T870 399-415 NN denotes pre-implantation
T871 416-427 NN denotes development
T872 427-429 , denotes ,
T873 429-431 PRP denotes we
T874 442-443 DT denotes a
T875 450-454 NN denotes line
T876 444-449 NN denotes mouse
T877 455-463 VBG denotes carrying
T878 464-465 DT denotes a
T879 475-483 NN denotes mutation
T880 466-474 VBN denotes targeted
T881 484-486 IN denotes in
T882 487-490 DT denotes the
T883 491-495 NN denotes gene
T884 496-504 VBG denotes encoding
T885 505-508 PRP$ denotes its
T886 515-522 NN denotes subunit
T887 509-514 JJ denotes large
T888 522-524 , denotes ,
T889 524-531 NN denotes p150CAF
T890 531-532 HYPH denotes -
T891 532-533 CD denotes 1
T892 533-534 . denotes .
T893 534-626 sentence denotes Loss of p150CAF-1 in homozygous mutants leads to developmental arrest at the 16-cell stage.
T894 535-539 NN denotes Loss
T895 575-580 VBZ denotes leads
T896 540-542 IN denotes of
T897 543-550 NN denotes p150CAF
T898 550-551 HYPH denotes -
T899 551-552 CD denotes 1
T900 553-555 IN denotes in
T901 556-566 JJ denotes homozygous
T902 567-574 NNS denotes mutants
T903 581-583 IN denotes to
T904 584-597 JJ denotes developmental
T905 598-604 NN denotes arrest
T906 605-607 IN denotes at
T907 608-611 DT denotes the
T908 620-625 NN denotes stage
T909 612-614 CD denotes 16
T910 615-619 NN denotes cell
T911 614-615 HYPH denotes -
T912 625-626 . denotes .
T913 626-755 sentence denotes Absence of p150CAF-1 in these embryos results in severe alterations in the nuclear organization of constitutive heterochromatin.
T914 627-634 NN denotes Absence
T915 665-672 VBZ denotes results
T916 635-637 IN denotes of
T917 638-645 NN denotes p150CAF
T918 645-646 HYPH denotes -
T919 646-647 CD denotes 1
T920 648-650 IN denotes in
T921 651-656 DT denotes these
T922 657-664 NNS denotes embryos
T923 673-675 IN denotes in
T924 676-682 JJ denotes severe
T925 683-694 NNS denotes alterations
T926 695-697 IN denotes in
T927 698-701 DT denotes the
T928 710-722 NN denotes organization
T929 702-709 JJ denotes nuclear
T930 723-725 IN denotes of
T931 726-738 JJ denotes constitutive
T932 739-754 NN denotes heterochromatin
T933 754-755 . denotes .
T934 755-898 sentence denotes We provide evidence that in wild-type embryos, heterochromatin domains are extensively reorganized between the two-cell and blastocyst stages.
T935 756-758 PRP denotes We
T936 759-766 VBP denotes provide
T937 767-775 NN denotes evidence
T938 776-780 IN denotes that
T939 843-854 VBN denotes reorganized
T940 781-783 IN denotes in
T941 784-788 JJ denotes wild
T942 789-793 NN denotes type
T943 788-789 HYPH denotes -
T944 794-801 NNS denotes embryos
T945 801-803 , denotes ,
T946 803-818 NN denotes heterochromatin
T947 819-826 NNS denotes domains
T948 827-830 VBP denotes are
T949 831-842 RB denotes extensively
T950 855-862 IN denotes between
T951 863-866 DT denotes the
T952 891-897 NNS denotes stages
T953 867-870 CD denotes two
T954 871-875 NN denotes cell
T955 870-871 HYPH denotes -
T956 876-879 CC denotes and
T957 880-890 NN denotes blastocyst
T958 897-898 . denotes .
T959 898-1197 sentence denotes In p150CAF-1 mutant 16-cell stage embryos, the altered organization of heterochromatin displays similarities to the structure of heterochromatin in two- to four-cell stage wild-type embryos, suggesting that CAF-1 is required for the maturation of heterochromatin during preimplantation development.
T960 899-901 IN denotes In
T961 986-994 VBZ denotes displays
T962 902-909 NN denotes p150CAF
T963 933-940 NNS denotes embryos
T964 909-910 HYPH denotes -
T965 910-911 CD denotes 1
T966 912-918 NN denotes mutant
T967 919-921 CD denotes 16
T968 922-926 NN denotes cell
T969 921-922 HYPH denotes -
T970 927-932 NN denotes stage
T971 940-942 , denotes ,
T972 942-945 DT denotes the
T973 954-966 NN denotes organization
T974 946-953 JJ denotes altered
T975 967-969 IN denotes of
T976 970-985 NN denotes heterochromatin
T977 995-1007 NNS denotes similarities
T978 1008-1010 IN denotes to
T979 1011-1014 DT denotes the
T980 1015-1024 NN denotes structure
T981 1025-1027 IN denotes of
T982 1028-1043 NN denotes heterochromatin
T983 1044-1046 IN denotes in
T984 1047-1050 CD denotes two
T985 1055-1059 CD denotes four
T986 1050-1051 HYPH denotes -
T987 1052-1054 IN denotes to
T988 1060-1064 NN denotes cell
T989 1059-1060 HYPH denotes -
T990 1065-1070 NN denotes stage
T991 1081-1088 NNS denotes embryos
T992 1071-1075 JJ denotes wild
T993 1076-1080 NN denotes type
T994 1075-1076 HYPH denotes -
T995 1088-1090 , denotes ,
T996 1090-1100 VBG denotes suggesting
T997 1101-1105 IN denotes that
T998 1115-1123 VBN denotes required
T999 1106-1109 NN denotes CAF
T1000 1109-1110 HYPH denotes -
T1001 1110-1111 CD denotes 1
T1002 1112-1114 VBZ denotes is
T1003 1124-1127 IN denotes for
T1004 1128-1131 DT denotes the
T1005 1132-1142 NN denotes maturation
T1006 1143-1145 IN denotes of
T1007 1146-1161 NN denotes heterochromatin
T1008 1162-1168 IN denotes during
T1009 1169-1184 NN denotes preimplantation
T1010 1185-1196 NN denotes development
T1011 1196-1197 . denotes .
T1012 1197-1379 sentence denotes In embryonic stem cells, depletion of p150CAF-1 using RNA interference results in the mislocalization, loss of clustering, and decondensation of pericentric heterochromatin domains.
T1013 1198-1200 IN denotes In
T1014 1269-1276 VBZ denotes results
T1015 1201-1210 JJ denotes embryonic
T1016 1216-1221 NNS denotes cells
T1017 1211-1215 NN denotes stem
T1018 1221-1223 , denotes ,
T1019 1223-1232 NN denotes depletion
T1020 1233-1235 IN denotes of
T1021 1236-1243 NN denotes p150CAF
T1022 1243-1244 HYPH denotes -
T1023 1244-1245 CD denotes 1
T1024 1246-1251 VBG denotes using
T1025 1252-1255 NN denotes RNA
T1026 1256-1268 NN denotes interference
T1027 1277-1279 IN denotes in
T1028 1280-1283 DT denotes the
T1029 1284-1299 NN denotes mislocalization
T1030 1299-1301 , denotes ,
T1031 1301-1305 NN denotes loss
T1032 1306-1308 IN denotes of
T1033 1309-1319 NN denotes clustering
T1034 1319-1321 , denotes ,
T1035 1321-1324 CC denotes and
T1036 1325-1339 NN denotes decondensation
T1037 1340-1342 IN denotes of
T1038 1343-1354 JJ denotes pericentric
T1039 1371-1378 NNS denotes domains
T1040 1355-1370 NN denotes heterochromatin
T1041 1378-1379 . denotes .
T1042 1379-1532 sentence denotes Furthermore, loss of CAF-1 in these cells results in the alteration of epigenetic histone methylation marks at the level of pericentric heterochromatin.
T1043 1380-1391 RB denotes Furthermore
T1044 1422-1429 VBZ denotes results
T1045 1391-1393 , denotes ,
T1046 1393-1397 NN denotes loss
T1047 1398-1400 IN denotes of
T1048 1401-1404 NN denotes CAF
T1049 1404-1405 HYPH denotes -
T1050 1405-1406 CD denotes 1
T1051 1407-1409 IN denotes in
T1052 1410-1415 DT denotes these
T1053 1416-1421 NNS denotes cells
T1054 1430-1432 IN denotes in
T1055 1433-1436 DT denotes the
T1056 1437-1447 NN denotes alteration
T1057 1448-1450 IN denotes of
T1058 1451-1461 JJ denotes epigenetic
T1059 1470-1481 NN denotes methylation
T1060 1462-1469 NN denotes histone
T1061 1482-1487 NNS denotes marks
T1062 1488-1490 IN denotes at
T1063 1491-1494 DT denotes the
T1064 1495-1500 NN denotes level
T1065 1501-1503 IN denotes of
T1066 1504-1515 JJ denotes pericentric
T1067 1516-1531 NN denotes heterochromatin
T1068 1531-1532 . denotes .
T1069 1532-1798 sentence denotes These alterations of heterochromatin are not found in p150CAF-1-depleted mouse embryonic fibroblasts, which are cells that are already lineage committed, suggesting that CAF-1 is specifically required for heterochromatin organization in pluripotent embryonic cells.
T1070 1533-1538 DT denotes These
T1071 1539-1550 NNS denotes alterations
T1072 1578-1583 VBN denotes found
T1073 1551-1553 IN denotes of
T1074 1554-1569 NN denotes heterochromatin
T1075 1570-1573 VBP denotes are
T1076 1574-1577 RB denotes not
T1077 1584-1586 IN denotes in
T1078 1587-1594 NN denotes p150CAF
T1079 1597-1605 VBN denotes depleted
T1080 1594-1595 HYPH denotes -
T1081 1595-1596 CD denotes 1
T1082 1596-1597 HYPH denotes -
T1083 1622-1633 NNS denotes fibroblasts
T1084 1606-1611 NN denotes mouse
T1085 1612-1621 JJ denotes embryonic
T1086 1633-1635 , denotes ,
T1087 1635-1640 WDT denotes which
T1088 1641-1644 VBP denotes are
T1089 1645-1650 NNS denotes cells
T1090 1651-1655 WDT denotes that
T1091 1676-1685 VBN denotes committed
T1092 1656-1659 VBP denotes are
T1093 1660-1667 RB denotes already
T1094 1668-1675 NN denotes lineage
T1095 1685-1687 , denotes ,
T1096 1687-1697 VBG denotes suggesting
T1097 1698-1702 IN denotes that
T1098 1725-1733 VBN denotes required
T1099 1703-1706 NN denotes CAF
T1100 1706-1707 HYPH denotes -
T1101 1707-1708 CD denotes 1
T1102 1709-1711 VBZ denotes is
T1103 1712-1724 RB denotes specifically
T1104 1734-1737 IN denotes for
T1105 1738-1753 NN denotes heterochromatin
T1106 1754-1766 NN denotes organization
T1107 1767-1769 IN denotes in
T1108 1770-1781 JJ denotes pluripotent
T1109 1792-1797 NNS denotes cells
T1110 1782-1791 JJ denotes embryonic
T1111 1797-1798 . denotes .
T1112 1798-1986 sentence denotes Our findings underline the role of the chromatin assembly machinery in controlling the spatial organization and epigenetic marking of the genome in early embryos and embryonic stem cells.
T1113 1799-1802 PRP$ denotes Our
T1114 1803-1811 NNS denotes findings
T1115 1812-1821 VBP denotes underline
T1116 1822-1825 DT denotes the
T1117 1826-1830 NN denotes role
T1118 1831-1833 IN denotes of
T1119 1834-1837 DT denotes the
T1120 1857-1866 NN denotes machinery
T1121 1838-1847 NN denotes chromatin
T1122 1848-1856 NN denotes assembly
T1123 1867-1869 IN denotes in
T1124 1870-1881 VBG denotes controlling
T1125 1882-1885 DT denotes the
T1126 1894-1906 NN denotes organization
T1127 1886-1893 JJ denotes spatial
T1128 1907-1910 CC denotes and
T1129 1911-1921 JJ denotes epigenetic
T1130 1922-1929 NN denotes marking
T1131 1930-1932 IN denotes of
T1132 1933-1936 DT denotes the
T1133 1937-1943 NN denotes genome
T1134 1944-1946 IN denotes in
T1135 1947-1952 JJ denotes early
T1136 1953-1960 NNS denotes embryos
T1137 1961-1964 CC denotes and
T1138 1965-1974 JJ denotes embryonic
T1139 1980-1985 NNS denotes cells
T1140 1975-1979 NN denotes stem
T1141 1985-1986 . denotes .
T2297 3237-3243 IN denotes During
T2298 3291-3300 VBZ denotes undergoes
T2299 3244-3249 NN denotes mouse
T2300 3267-3278 NN denotes development
T2301 3250-3266 NN denotes pre-implantation
T2302 3278-3280 , denotes ,
T2303 3280-3283 DT denotes the
T2304 3284-3290 NN denotes genome
T2305 3301-3302 DT denotes a
T2306 3303-3309 NN denotes series
T2307 3310-3312 IN denotes of
T2308 3313-3318 JJ denotes major
T2309 3330-3337 NNS denotes changes
T2310 3319-3329 JJ denotes epigenetic
T2311 3338-3346 VBN denotes required
T2312 3347-3350 IN denotes for
T2313 3351-3360 JJ denotes embryonic
T2314 3366-3376 NN denotes expression
T2315 3361-3365 NN denotes gene
T2316 3376-3378 , denotes ,
T2317 3378-3381 DT denotes the
T2318 3382-3393 NN denotes maintenance
T2319 3394-3396 IN denotes of
T2320 3397-3408 NN denotes totipotency
T2321 3408-3410 , denotes ,
T2322 3410-3413 CC denotes and
T2323 3414-3417 DT denotes the
T2324 3440-3446 NNS denotes events
T2325 3418-3423 JJ denotes first
T2326 3424-3439 NN denotes differentiation
T2327 3447-3448 -LRB- denotes [
T2328 3450-3451 CD denotes 2
T2329 3448-3449 CD denotes 1
T2330 3449-3450 , denotes ,
T2331 3451-3452 -RRB- denotes ]
T2332 3452-3453 . denotes .
T2333 3453-3624 sentence denotes While many studies have established the importance of DNA methylation in epigenetic reprogramming, recent data point to a crucial role of chromatin in this process [3–5].
T2334 3454-3459 IN denotes While
T2335 3478-3489 VBN denotes established
T2336 3460-3464 JJ denotes many
T2337 3465-3472 NNS denotes studies
T2338 3473-3477 VBP denotes have
T2339 3565-3570 VBP denotes point
T2340 3490-3493 DT denotes the
T2341 3494-3504 NN denotes importance
T2342 3505-3507 IN denotes of
T2343 3508-3511 NN denotes DNA
T2344 3512-3523 NN denotes methylation
T2345 3524-3526 IN denotes in
T2346 3527-3537 JJ denotes epigenetic
T2347 3538-3551 NN denotes reprogramming
T2348 3551-3553 , denotes ,
T2349 3553-3559 JJ denotes recent
T2350 3560-3564 NNS denotes data
T2351 3571-3573 IN denotes to
T2352 3574-3575 DT denotes a
T2353 3584-3588 NN denotes role
T2354 3576-3583 JJ denotes crucial
T2355 3589-3591 IN denotes of
T2356 3592-3601 NN denotes chromatin
T2357 3602-3604 IN denotes in
T2358 3605-3609 DT denotes this
T2359 3610-3617 NN denotes process
T2360 3618-3619 -LRB- denotes [
T2361 3619-3620 CD denotes 3
T2362 3620-3621 SYM denotes
T2363 3621-3622 CD denotes 5
T2364 3622-3623 -RRB- denotes ]
T2365 3623-3624 . denotes .
T2366 3624-3832 sentence denotes Yet we know very little about the role of histone modifying enzymes, chromatin remodeling factors, and histone chaperones during pre-implantation development, or in stem cells derived from early embryos [6].
T2367 3625-3628 RB denotes Yet
T2368 3632-3636 VBP denotes know
T2369 3629-3631 PRP denotes we
T2370 3637-3641 RB denotes very
T2371 3642-3648 JJ denotes little
T2372 3649-3654 IN denotes about
T2373 3655-3658 DT denotes the
T2374 3659-3663 NN denotes role
T2375 3664-3666 IN denotes of
T2376 3667-3674 NN denotes histone
T2377 3675-3684 VBG denotes modifying
T2378 3685-3692 NNS denotes enzymes
T2379 3692-3694 , denotes ,
T2380 3694-3703 NN denotes chromatin
T2381 3704-3714 NN denotes remodeling
T2382 3715-3722 NNS denotes factors
T2383 3722-3724 , denotes ,
T2384 3724-3727 CC denotes and
T2385 3728-3735 NN denotes histone
T2386 3736-3746 NNS denotes chaperones
T2387 3747-3753 IN denotes during
T2388 3754-3770 NN denotes pre-implantation
T2389 3771-3782 NN denotes development
T2390 3782-3784 , denotes ,
T2391 3784-3786 CC denotes or
T2392 3787-3789 IN denotes in
T2393 3790-3794 NN denotes stem
T2394 3795-3800 NNS denotes cells
T2395 3801-3808 VBN denotes derived
T2396 3809-3813 IN denotes from
T2397 3814-3819 JJ denotes early
T2398 3820-3827 NNS denotes embryos
T2399 3828-3829 -LRB- denotes [
T2400 3829-3830 CD denotes 6
T2401 3830-3831 -RRB- denotes ]
T2402 3831-3832 . denotes .
T2403 3832-4078 sentence denotes A subset of identified histone chaperones and chromatin remodeling complexes can collaborate to promote nucleosome assembly in vitro and are therefore in a strategic position to control chromatin assembly and maturation during development [7,8].
T2404 3833-3834 DT denotes A
T2405 3835-3841 NN denotes subset
T2406 3914-3925 VB denotes collaborate
T2407 3842-3844 IN denotes of
T2408 3845-3855 VBN denotes identified
T2409 3864-3874 NNS denotes chaperones
T2410 3856-3863 NN denotes histone
T2411 3875-3878 CC denotes and
T2412 3879-3888 NN denotes chromatin
T2413 3889-3899 NN denotes remodeling
T2414 3900-3909 NNS denotes complexes
T2415 3910-3913 MD denotes can
T2416 3926-3928 TO denotes to
T2417 3929-3936 VB denotes promote
T2418 3937-3947 NN denotes nucleosome
T2419 3948-3956 NN denotes assembly
T2420 3957-3959 FW denotes in
T2421 3960-3965 FW denotes vitro
T2422 3966-3969 CC denotes and
T2423 3970-3973 VBP denotes are
T2424 3974-3983 RB denotes therefore
T2425 3984-3986 IN denotes in
T2426 3987-3988 DT denotes a
T2427 3999-4007 NN denotes position
T2428 3989-3998 JJ denotes strategic
T2429 4008-4010 TO denotes to
T2430 4011-4018 VB denotes control
T2431 4019-4028 NN denotes chromatin
T2432 4029-4037 NN denotes assembly
T2433 4038-4041 CC denotes and
T2434 4042-4052 NN denotes maturation
T2435 4053-4059 IN denotes during
T2436 4060-4071 NN denotes development
T2437 4072-4073 -LRB- denotes [
T2438 4075-4076 CD denotes 8
T2439 4073-4074 CD denotes 7
T2440 4074-4075 , denotes ,
T2441 4076-4077 -RRB- denotes ]
T2442 4077-4078 . denotes .
T2443 4078-4300 sentence denotes Among histone chaperones, chromatin assembly factor 1 (CAF-1) is a three-subunit (p150, p60, and p48) complex which promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair [9,10].
T2444 4079-4084 IN denotes Among
T2445 4141-4143 VBZ denotes is
T2446 4085-4092 NN denotes histone
T2447 4093-4103 NNS denotes chaperones
T2448 4103-4105 , denotes ,
T2449 4105-4114 NN denotes chromatin
T2450 4115-4123 NN denotes assembly
T2451 4124-4130 NN denotes factor
T2452 4131-4132 CD denotes 1
T2453 4133-4134 -LRB- denotes (
T2454 4134-4137 NN denotes CAF
T2455 4137-4138 HYPH denotes -
T2456 4138-4139 CD denotes 1
T2457 4139-4140 -RRB- denotes )
T2458 4144-4145 DT denotes a
T2459 4181-4188 NN denotes complex
T2460 4146-4151 CD denotes three
T2461 4152-4159 NN denotes subunit
T2462 4151-4152 HYPH denotes -
T2463 4160-4161 -LRB- denotes (
T2464 4161-4165 NN denotes p150
T2465 4165-4167 , denotes ,
T2466 4167-4170 NN denotes p60
T2467 4170-4172 , denotes ,
T2468 4172-4175 CC denotes and
T2469 4176-4179 NN denotes p48
T2470 4179-4180 -RRB- denotes )
T2471 4189-4194 WDT denotes which
T2472 4195-4203 VBZ denotes promotes
T2473 4204-4211 NN denotes histone
T2474 4212-4214 NN denotes H3
T2475 4222-4232 NN denotes deposition
T2476 4215-4218 CC denotes and
T2477 4219-4221 NN denotes H4
T2478 4233-4237 IN denotes onto
T2479 4238-4243 RB denotes newly
T2480 4244-4255 VBN denotes synthesized
T2481 4256-4259 NN denotes DNA
T2482 4260-4266 IN denotes during
T2483 4267-4278 NN denotes replication
T2484 4279-4281 CC denotes or
T2485 4282-4285 NN denotes DNA
T2486 4286-4292 NN denotes repair
T2487 4293-4294 -LRB- denotes [
T2488 4296-4298 CD denotes 10
T2489 4294-4295 CD denotes 9
T2490 4295-4296 , denotes ,
T2491 4298-4299 -RRB- denotes ]
T2492 4299-4300 . denotes .
T2493 4300-4552 sentence denotes Specifically, CAF-1 deposits the histone H3 variant H3.1 into chromatin, in a pathway coupled to DNA synthesis, whereas a second histone chaperone, HIRA, is involved in the deposition of the H3.3 variant in a DNA synthesis independent pathway [11,12].
T2494 4301-4313 RB denotes Specifically
T2495 4321-4329 VBZ denotes deposits
T2496 4313-4315 , denotes ,
T2497 4315-4318 NN denotes CAF
T2498 4318-4319 HYPH denotes -
T2499 4319-4320 CD denotes 1
T2500 4330-4333 DT denotes the
T2501 4345-4352 NN denotes variant
T2502 4334-4341 NN denotes histone
T2503 4342-4344 NN denotes H3
T2504 4353-4357 NN denotes H3.1
T2505 4358-4362 IN denotes into
T2506 4363-4372 NN denotes chromatin
T2507 4372-4374 , denotes ,
T2508 4374-4376 IN denotes in
T2509 4377-4378 DT denotes a
T2510 4379-4386 NN denotes pathway
T2511 4387-4394 VBN denotes coupled
T2512 4395-4397 IN denotes to
T2513 4398-4401 NN denotes DNA
T2514 4402-4411 NN denotes synthesis
T2515 4411-4413 , denotes ,
T2516 4413-4420 IN denotes whereas
T2517 4458-4466 VBN denotes involved
T2518 4421-4422 DT denotes a
T2519 4438-4447 NN denotes chaperone
T2520 4423-4429 JJ denotes second
T2521 4430-4437 NN denotes histone
T2522 4447-4449 , denotes ,
T2523 4449-4453 NN denotes HIRA
T2524 4453-4455 , denotes ,
T2525 4455-4457 VBZ denotes is
T2526 4467-4469 IN denotes in
T2527 4470-4473 DT denotes the
T2528 4474-4484 NN denotes deposition
T2529 4485-4487 IN denotes of
T2530 4488-4491 DT denotes the
T2531 4497-4504 NN denotes variant
T2532 4492-4496 NN denotes H3.3
T2533 4505-4507 IN denotes in
T2534 4508-4509 DT denotes a
T2535 4536-4543 NN denotes pathway
T2536 4510-4513 NN denotes DNA
T2537 4514-4523 NN denotes synthesis
T2538 4524-4535 JJ denotes independent
T2539 4544-4545 -LRB- denotes [
T2540 4548-4550 CD denotes 12
T2541 4545-4547 CD denotes 11
T2542 4547-4548 , denotes ,
T2543 4550-4551 -RRB- denotes ]
T2544 4551-4552 . denotes .
T2545 4552-4859 sentence denotes In addition to this specific chromatin assembly activity, CAF-1 interacts with several proteins present in heterochromatin, including heterochromatin protein 1 (HP1) and MBD1, a methyl-CpG binding domain protein that recruits histone deacetylase and repressive histone methyltransferase activities [13–15].
T2546 4553-4555 IN denotes In
T2547 4617-4626 VBZ denotes interacts
T2548 4556-4564 NN denotes addition
T2549 4565-4567 IN denotes to
T2550 4568-4572 DT denotes this
T2551 4601-4609 NN denotes activity
T2552 4573-4581 JJ denotes specific
T2553 4582-4591 NN denotes chromatin
T2554 4592-4600 NN denotes assembly
T2555 4609-4611 , denotes ,
T2556 4611-4614 NN denotes CAF
T2557 4614-4615 HYPH denotes -
T2558 4615-4616 CD denotes 1
T2559 4627-4631 IN denotes with
T2560 4632-4639 JJ denotes several
T2561 4640-4648 NN denotes proteins
T2562 4649-4656 JJ denotes present
T2563 4657-4659 IN denotes in
T2564 4660-4675 NN denotes heterochromatin
T2565 4675-4677 , denotes ,
T2566 4677-4686 VBG denotes including
T2567 4687-4702 NN denotes heterochromatin
T2568 4703-4710 NN denotes protein
T2569 4711-4712 CD denotes 1
T2570 4713-4714 -LRB- denotes (
T2571 4714-4717 NN denotes HP1
T2572 4717-4718 -RRB- denotes )
T2573 4719-4722 CC denotes and
T2574 4723-4727 NN denotes MBD1
T2575 4727-4729 , denotes ,
T2576 4729-4730 DT denotes a
T2577 4757-4764 NN denotes protein
T2578 4731-4737 NN denotes methyl
T2579 4738-4741 NN denotes CpG
T2580 4737-4738 HYPH denotes -
T2581 4742-4749 NN denotes binding
T2582 4750-4756 NN denotes domain
T2583 4765-4769 WDT denotes that
T2584 4770-4778 VBZ denotes recruits
T2585 4779-4786 NN denotes histone
T2586 4787-4798 NN denotes deacetylase
T2587 4840-4850 NNS denotes activities
T2588 4799-4802 CC denotes and
T2589 4803-4813 JJ denotes repressive
T2590 4822-4839 NN denotes methyltransferase
T2591 4814-4821 NN denotes histone
T2592 4851-4852 -LRB- denotes [
T2593 4852-4854 CD denotes 13
T2594 4854-4855 SYM denotes
T2595 4855-4857 CD denotes 15
T2596 4857-4858 -RRB- denotes ]
T2597 4858-4859 . denotes .
T2598 4859-5031 sentence denotes Furthermore, p150CAF-1 is required to ensure a replication-specific pool of HP1 molecules at replication sites in pericentric heterochromatin during mid-late S phase [16].
T2599 4860-4871 RB denotes Furthermore
T2600 4886-4894 VBN denotes required
T2601 4871-4873 , denotes ,
T2602 4873-4880 NN denotes p150CAF
T2603 4880-4881 HYPH denotes -
T2604 4881-4882 CD denotes 1
T2605 4883-4885 VBZ denotes is
T2606 4895-4897 TO denotes to
T2607 4898-4904 VB denotes ensure
T2608 4905-4906 DT denotes a
T2609 4928-4932 NN denotes pool
T2610 4907-4918 NN denotes replication
T2611 4919-4927 JJ denotes specific
T2612 4918-4919 HYPH denotes -
T2613 4933-4935 IN denotes of
T2614 4936-4939 NN denotes HP1
T2615 4940-4949 NNS denotes molecules
T2616 4950-4952 IN denotes at
T2617 4953-4964 NN denotes replication
T2618 4965-4970 NNS denotes sites
T2619 4971-4973 IN denotes in
T2620 4974-4985 JJ denotes pericentric
T2621 4986-5001 NN denotes heterochromatin
T2622 5002-5008 IN denotes during
T2623 5009-5012 JJ denotes mid
T2624 5013-5017 JJ denotes late
T2625 5012-5013 SYM denotes -
T2626 5020-5025 NN denotes phase
T2627 5018-5019 NN denotes S
T2628 5026-5027 -LRB- denotes [
T2629 5027-5029 CD denotes 16
T2630 5029-5030 -RRB- denotes ]
T2631 5030-5031 . denotes .
T2632 5031-5164 sentence denotes Taken together, these data suggest roles for CAF-1 in the formation of heterochromatin and in the heritability of epigenetic traits.
T2633 5032-5037 VBN denotes Taken
T2634 5059-5066 VBP denotes suggest
T2635 5038-5046 RB denotes together
T2636 5046-5048 , denotes ,
T2637 5048-5053 DT denotes these
T2638 5054-5058 NNS denotes data
T2639 5067-5072 NNS denotes roles
T2640 5073-5076 IN denotes for
T2641 5077-5080 NN denotes CAF
T2642 5080-5081 HYPH denotes -
T2643 5081-5082 CD denotes 1
T2644 5083-5085 IN denotes in
T2645 5086-5089 DT denotes the
T2646 5090-5099 NN denotes formation
T2647 5100-5102 IN denotes of
T2648 5103-5118 NN denotes heterochromatin
T2649 5119-5122 CC denotes and
T2650 5123-5125 IN denotes in
T2651 5126-5129 DT denotes the
T2652 5130-5142 NN denotes heritability
T2653 5143-5145 IN denotes of
T2654 5146-5156 JJ denotes epigenetic
T2655 5157-5163 NNS denotes traits
T2656 5163-5164 . denotes .
T2657 5164-5424 sentence denotes While the function of this evolutionary conserved histone chaperone has been studied extensively biochemically, we still lack information concerning its importance during early development in mammals and in pluripotent cells such as embryonic stem (ES) cells.
T2658 5165-5170 IN denotes While
T2659 5242-5249 VBN denotes studied
T2660 5171-5174 DT denotes the
T2661 5175-5183 NN denotes function
T2662 5184-5186 IN denotes of
T2663 5187-5191 DT denotes this
T2664 5223-5232 NN denotes chaperone
T2665 5192-5204 JJ denotes evolutionary
T2666 5205-5214 VBN denotes conserved
T2667 5215-5222 NN denotes histone
T2668 5233-5236 VBZ denotes has
T2669 5237-5241 VBN denotes been
T2670 5286-5290 VBP denotes lack
T2671 5250-5261 RB denotes extensively
T2672 5262-5275 RB denotes biochemically
T2673 5275-5277 , denotes ,
T2674 5277-5279 PRP denotes we
T2675 5280-5285 RB denotes still
T2676 5291-5302 NN denotes information
T2677 5303-5313 VBG denotes concerning
T2678 5314-5317 PRP$ denotes its
T2679 5318-5328 NN denotes importance
T2680 5329-5335 IN denotes during
T2681 5336-5341 JJ denotes early
T2682 5342-5353 NN denotes development
T2683 5354-5356 IN denotes in
T2684 5357-5364 NNS denotes mammals
T2685 5365-5368 CC denotes and
T2686 5369-5371 IN denotes in
T2687 5372-5383 JJ denotes pluripotent
T2688 5384-5389 NNS denotes cells
T2689 5390-5394 JJ denotes such
T2690 5395-5397 IN denotes as
T2691 5398-5407 JJ denotes embryonic
T2692 5408-5412 NN denotes stem
T2693 5418-5423 NNS denotes cells
T2694 5413-5414 -LRB- denotes (
T2695 5414-5416 NN denotes ES
T2696 5416-5417 -RRB- denotes )
T2697 5423-5424 . denotes .
T2698 5424-5582 sentence denotes Here, we have analyzed the importance of CAF-1 during early mouse development by genetic ablation and in ES cells by depletion using RNA interference (RNAi).
T2699 5425-5429 RB denotes Here
T2700 5439-5447 VBN denotes analyzed
T2701 5429-5431 , denotes ,
T2702 5431-5433 PRP denotes we
T2703 5434-5438 VBP denotes have
T2704 5448-5451 DT denotes the
T2705 5452-5462 NN denotes importance
T2706 5463-5465 IN denotes of
T2707 5466-5469 NN denotes CAF
T2708 5469-5470 HYPH denotes -
T2709 5470-5471 CD denotes 1
T2710 5472-5478 IN denotes during
T2711 5479-5484 JJ denotes early
T2712 5491-5502 NN denotes development
T2713 5485-5490 NN denotes mouse
T2714 5503-5505 IN denotes by
T2715 5506-5513 JJ denotes genetic
T2716 5514-5522 NN denotes ablation
T2717 5523-5526 CC denotes and
T2718 5527-5529 IN denotes in
T2719 5530-5532 NN denotes ES
T2720 5533-5538 NNS denotes cells
T2721 5539-5541 IN denotes by
T2722 5542-5551 NN denotes depletion
T2723 5552-5557 VBG denotes using
T2724 5558-5561 NN denotes RNA
T2725 5562-5574 NN denotes interference
T2726 5575-5576 -LRB- denotes (
T2727 5576-5580 NN denotes RNAi
T2728 5580-5581 -RRB- denotes )
T2729 5581-5582 . denotes .
T2730 5582-5665 sentence denotes We show that CAF-1 is essential for viability in early mouse embryos and ES cells.
T2731 5583-5585 PRP denotes We
T2732 5586-5590 VBP denotes show
T2733 5591-5595 IN denotes that
T2734 5602-5604 VBZ denotes is
T2735 5596-5599 NN denotes CAF
T2736 5599-5600 HYPH denotes -
T2737 5600-5601 CD denotes 1
T2738 5605-5614 JJ denotes essential
T2739 5615-5618 IN denotes for
T2740 5619-5628 NN denotes viability
T2741 5629-5631 IN denotes in
T2742 5632-5637 JJ denotes early
T2743 5644-5651 NNS denotes embryos
T2744 5638-5643 NN denotes mouse
T2745 5652-5655 CC denotes and
T2746 5656-5658 NN denotes ES
T2747 5659-5664 NNS denotes cells
T2748 5664-5665 . denotes .
T2749 5665-5819 sentence denotes We provide evidence that CAF-1 is required for the spatial organization and epigenetic marking of heterochromatin domains in pluripotent embryonic cells.
T2750 5666-5668 PRP denotes We
T2751 5669-5676 VBP denotes provide
T2752 5677-5685 NN denotes evidence
T2753 5686-5690 IN denotes that
T2754 5700-5708 VBN denotes required
T2755 5691-5694 NN denotes CAF
T2756 5694-5695 HYPH denotes -
T2757 5695-5696 CD denotes 1
T2758 5697-5699 VBZ denotes is
T2759 5709-5712 IN denotes for
T2760 5713-5716 DT denotes the
T2761 5725-5737 NN denotes organization
T2762 5717-5724 JJ denotes spatial
T2763 5738-5741 CC denotes and
T2764 5742-5752 JJ denotes epigenetic
T2765 5753-5760 NN denotes marking
T2766 5761-5763 IN denotes of
T2767 5764-5779 NN denotes heterochromatin
T2768 5780-5787 NNS denotes domains
T2769 5788-5790 IN denotes in
T2770 5791-5802 JJ denotes pluripotent
T2771 5813-5818 NNS denotes cells
T2772 5803-5812 JJ denotes embryonic
T2773 5818-5819 . denotes .
T7971 5829-5831 PRP denotes We
T7972 5832-5836 VBD denotes used
T7973 5837-5841 NN denotes gene
T7974 5842-5851 NN denotes targeting
T7975 5852-5854 IN denotes in
T7976 5855-5857 NN denotes ES
T7977 5858-5863 NNS denotes cells
T7978 5864-5866 TO denotes to
T7979 5867-5873 VB denotes delete
T7980 5874-5878 NN denotes exon
T7981 5879-5880 CD denotes 3
T7982 5881-5883 IN denotes in
T7983 5884-5887 DT denotes the
T7984 5895-5899 NN denotes gene
T7985 5888-5894 NN denotes Chaf1a
T7986 5899-5901 , denotes ,
T7987 5901-5906 WDT denotes which
T7988 5907-5914 VBZ denotes encodes
T7989 5915-5922 NN denotes p150CAF
T7990 5922-5923 HYPH denotes -
T7991 5923-5924 CD denotes 1
T7992 5925-5926 -LRB- denotes (
T7993 5933-5935 NN denotes 1A
T7994 5926-5932 NN denotes Figure
T7995 5935-5936 -RRB- denotes )
T7996 5936-5937 . denotes .
T7997 5937-6075 sentence denotes Chaf1a +/− mice were born at a Mendelian frequency, were of normal size and weight, displayed no obvious abnormalities, and were fertile.
T7998 5938-5944 NN denotes Chaf1a
T7999 5949-5953 NNS denotes mice
T8000 5945-5946 SYM denotes +
T8001 5946-5947 HYPH denotes /
T8002 5947-5948 SYM denotes
T8003 5959-5963 VBN denotes born
T8004 5954-5958 VBD denotes were
T8005 5964-5966 IN denotes at
T8006 5967-5968 DT denotes a
T8007 5979-5988 NN denotes frequency
T8008 5969-5978 JJ denotes Mendelian
T8009 5988-5990 , denotes ,
T8010 5990-5994 VBD denotes were
T8011 5995-5997 IN denotes of
T8012 5998-6004 JJ denotes normal
T8013 6005-6009 NN denotes size
T8014 6010-6013 CC denotes and
T8015 6014-6020 NN denotes weight
T8016 6020-6022 , denotes ,
T8017 6022-6031 VBD denotes displayed
T8018 6032-6034 DT denotes no
T8019 6043-6056 NNS denotes abnormalities
T8020 6035-6042 JJ denotes obvious
T8021 6056-6058 , denotes ,
T8022 6058-6061 CC denotes and
T8023 6062-6066 VBD denotes were
T8024 6067-6074 JJ denotes fertile
T8025 6074-6075 . denotes .
T8026 6075-6153 sentence denotes Crossing heterozygous mice failed to generate viable newborn Chaf1a −/− mice.
T8027 6076-6084 VBG denotes Crossing
T8028 6103-6109 VBD denotes failed
T8029 6085-6097 JJ denotes heterozygous
T8030 6098-6102 NNS denotes mice
T8031 6110-6112 TO denotes to
T8032 6113-6121 VB denotes generate
T8033 6122-6128 JJ denotes viable
T8034 6148-6152 NNS denotes mice
T8035 6129-6136 JJ denotes newborn
T8036 6137-6143 NN denotes Chaf1a
T8037 6144-6145 SYM denotes
T8038 6145-6146 HYPH denotes /
T8039 6146-6147 SYM denotes
T8040 6152-6153 . denotes .
T8041 6153-6253 sentence denotes Furthermore, no homozygous Chaf1a −/− embryos were detected at any of the post-implantation stages.
T8042 6154-6165 RB denotes Furthermore
T8043 6205-6213 VBN denotes detected
T8044 6165-6167 , denotes ,
T8045 6167-6169 DT denotes no
T8046 6192-6199 NNS denotes embryos
T8047 6170-6180 JJ denotes homozygous
T8048 6181-6187 NN denotes Chaf1a
T8049 6188-6189 SYM denotes
T8050 6189-6190 HYPH denotes /
T8051 6190-6191 SYM denotes
T8052 6200-6204 VBD denotes were
T8053 6214-6216 IN denotes at
T8054 6217-6220 DT denotes any
T8055 6221-6223 IN denotes of
T8056 6224-6227 DT denotes the
T8057 6246-6252 NNS denotes stages
T8058 6228-6245 JJ denotes post-implantation
T8059 6252-6253 . denotes .
T8060 6253-6355 sentence denotes However, we could detect Chaf1a −/− embryos at embryonic day 4 (E4) using a PCR strategy (Figure 1B).
T8061 6254-6261 RB denotes However
T8062 6272-6278 VB denotes detect
T8063 6261-6263 , denotes ,
T8064 6263-6265 PRP denotes we
T8065 6266-6271 MD denotes could
T8066 6279-6285 NN denotes Chaf1a
T8067 6290-6297 NNS denotes embryos
T8068 6286-6287 SYM denotes
T8069 6287-6288 HYPH denotes /
T8070 6288-6289 SYM denotes
T8071 6298-6300 IN denotes at
T8072 6301-6310 JJ denotes embryonic
T8073 6311-6314 NN denotes day
T8074 6315-6316 CD denotes 4
T8075 6317-6318 -LRB- denotes (
T8076 6318-6320 NN denotes E4
T8077 6320-6321 -RRB- denotes )
T8078 6322-6327 VBG denotes using
T8079 6328-6329 DT denotes a
T8080 6334-6342 NN denotes strategy
T8081 6330-6333 NN denotes PCR
T8082 6343-6344 -LRB- denotes (
T8083 6351-6353 NN denotes 1B
T8084 6344-6350 NN denotes Figure
T8085 6353-6354 -RRB- denotes )
T8086 6354-6355 . denotes .
T8087 6355-6536 sentence denotes They represent only 10% of E4 embryos obtained from Chaf1a +/− mice intercrosses, suggesting that more than half of the homozygous mutant embryos had degenerated before this stage.
T8088 6356-6360 PRP denotes They
T8089 6361-6370 VBP denotes represent
T8090 6371-6375 RB denotes only
T8091 6376-6378 CD denotes 10
T8092 6378-6379 NN denotes %
T8093 6380-6382 IN denotes of
T8094 6383-6385 NN denotes E4
T8095 6386-6393 NNS denotes embryos
T8096 6394-6402 VBN denotes obtained
T8097 6403-6407 IN denotes from
T8098 6408-6414 NN denotes Chaf1a
T8099 6424-6436 NNS denotes intercrosses
T8100 6415-6416 SYM denotes +
T8101 6416-6417 HYPH denotes /
T8102 6417-6418 SYM denotes
T8103 6419-6423 NNS denotes mice
T8104 6436-6438 , denotes ,
T8105 6438-6448 VBG denotes suggesting
T8106 6449-6453 IN denotes that
T8107 6506-6517 VBN denotes degenerated
T8108 6454-6458 JJR denotes more
T8109 6464-6468 NN denotes half
T8110 6459-6463 IN denotes than
T8111 6469-6471 IN denotes of
T8112 6472-6475 DT denotes the
T8113 6494-6501 NNS denotes embryos
T8114 6476-6486 JJ denotes homozygous
T8115 6487-6493 NN denotes mutant
T8116 6502-6505 VBD denotes had
T8117 6518-6524 IN denotes before
T8118 6525-6529 DT denotes this
T8119 6530-6535 NN denotes stage
T8120 6535-6536 . denotes .
T8121 6536-6702 sentence denotes Moreover, mutant embryos contained only eight to 16 cells at the E4 stage, instead of 32 cells observed for wild-type or heterozygous blastocysts (Figure 1C and 1D).
T8122 6537-6545 RB denotes Moreover
T8123 6562-6571 VBD denotes contained
T8124 6545-6547 , denotes ,
T8125 6547-6553 NN denotes mutant
T8126 6554-6561 NNS denotes embryos
T8127 6572-6576 RB denotes only
T8128 6586-6588 CD denotes 16
T8129 6577-6582 CD denotes eight
T8130 6583-6585 IN denotes to
T8131 6589-6594 NNS denotes cells
T8132 6595-6597 IN denotes at
T8133 6598-6601 DT denotes the
T8134 6605-6610 NN denotes stage
T8135 6602-6604 NN denotes E4
T8136 6610-6612 , denotes ,
T8137 6612-6619 RB denotes instead
T8138 6620-6622 IN denotes of
T8139 6623-6625 CD denotes 32
T8140 6626-6631 NNS denotes cells
T8141 6632-6640 VBN denotes observed
T8142 6641-6644 IN denotes for
T8143 6645-6649 JJ denotes wild
T8144 6650-6654 NN denotes type
T8145 6649-6650 HYPH denotes -
T8146 6671-6682 NNS denotes blastocysts
T8147 6655-6657 CC denotes or
T8148 6658-6670 JJ denotes heterozygous
T8149 6683-6684 -LRB- denotes (
T8150 6691-6693 NN denotes 1C
T8151 6684-6690 NN denotes Figure
T8152 6694-6697 CC denotes and
T8153 6698-6700 NN denotes 1D
T8154 6700-6701 -RRB- denotes )
T8155 6701-6702 . denotes .
T8156 6702-6833 sentence denotes Further analysis by light microscopy using immunofluorescence (IF) allowed us to compare wild-type and p150CAF-1-depleted embryos.
T8157 6703-6710 JJ denotes Further
T8158 6711-6719 NN denotes analysis
T8159 6770-6777 VBD denotes allowed
T8160 6720-6722 IN denotes by
T8161 6723-6728 NN denotes light
T8162 6729-6739 NN denotes microscopy
T8163 6740-6745 VBG denotes using
T8164 6746-6764 NN denotes immunofluorescence
T8165 6765-6766 -LRB- denotes (
T8166 6766-6768 NN denotes IF
T8167 6768-6769 -RRB- denotes )
T8168 6778-6780 PRP denotes us
T8169 6784-6791 VB denotes compare
T8170 6781-6783 TO denotes to
T8171 6792-6796 JJ denotes wild
T8172 6797-6801 NN denotes type
T8173 6796-6797 HYPH denotes -
T8174 6825-6832 NNS denotes embryos
T8175 6802-6805 CC denotes and
T8176 6806-6813 NN denotes p150CAF
T8177 6816-6824 VBN denotes depleted
T8178 6813-6814 HYPH denotes -
T8179 6814-6815 CD denotes 1
T8180 6815-6816 HYPH denotes -
T8181 6832-6833 . denotes .
T8182 6833-7030 sentence denotes A loss of p150CAF-1 staining could not be detected before the eight-cell stage (unpublished data) suggesting that maternally contributed protein is present in the embryo up to the four-cell stage.
T8183 6834-6835 DT denotes A
T8184 6836-6840 NN denotes loss
T8185 6876-6884 VBN denotes detected
T8186 6841-6843 IN denotes of
T8187 6844-6851 NN denotes p150CAF
T8188 6854-6862 NN denotes staining
T8189 6851-6852 HYPH denotes -
T8190 6852-6853 CD denotes 1
T8191 6863-6868 MD denotes could
T8192 6869-6872 RB denotes not
T8193 6873-6875 VB denotes be
T8194 6885-6891 IN denotes before
T8195 6892-6895 DT denotes the
T8196 6907-6912 NN denotes stage
T8197 6896-6901 CD denotes eight
T8198 6902-6906 NN denotes cell
T8199 6901-6902 HYPH denotes -
T8200 6913-6914 -LRB- denotes (
T8201 6926-6930 NNS denotes data
T8202 6914-6925 JJ denotes unpublished
T8203 6930-6931 -RRB- denotes )
T8204 6932-6942 VBG denotes suggesting
T8205 6943-6947 IN denotes that
T8206 6979-6981 VBZ denotes is
T8207 6948-6958 RB denotes maternally
T8208 6959-6970 VBN denotes contributed
T8209 6971-6978 NN denotes protein
T8210 6982-6989 JJ denotes present
T8211 6990-6992 IN denotes in
T8212 6993-6996 DT denotes the
T8213 6997-7003 NN denotes embryo
T8214 7004-7006 IN denotes up
T8215 7007-7009 IN denotes to
T8216 7010-7013 DT denotes the
T8217 7024-7029 NN denotes stage
T8218 7014-7018 CD denotes four
T8219 7019-7023 NN denotes cell
T8220 7018-7019 HYPH denotes -
T8221 7029-7030 . denotes .
T8222 7030-7162 sentence denotes Thus, depletion of p150CAF-1 protein from this stage allows a maximum of two additional cell divisions before developmental arrest.
T8223 7031-7035 RB denotes Thus
T8224 7084-7090 VBZ denotes allows
T8225 7035-7037 , denotes ,
T8226 7037-7046 NN denotes depletion
T8227 7047-7049 IN denotes of
T8228 7050-7057 NN denotes p150CAF
T8229 7060-7067 NN denotes protein
T8230 7057-7058 HYPH denotes -
T8231 7058-7059 CD denotes 1
T8232 7068-7072 IN denotes from
T8233 7073-7077 DT denotes this
T8234 7078-7083 NN denotes stage
T8235 7091-7092 DT denotes a
T8236 7093-7100 NN denotes maximum
T8237 7101-7103 IN denotes of
T8238 7104-7107 CD denotes two
T8239 7124-7133 NNS denotes divisions
T8240 7108-7118 JJ denotes additional
T8241 7119-7123 NN denotes cell
T8242 7134-7140 IN denotes before
T8243 7141-7154 JJ denotes developmental
T8244 7155-7161 NN denotes arrest
T8245 7161-7162 . denotes .
T8246 7162-9849 sentence denotes Figure 1 Loss of p150CAF-1 Function Leads to Early Developmental Arrest and Alteration of Heterochromatin Organization (A) Generation of Chaf1a +/− mice by homologous recombination in ES cells. (Top) Scheme of the p150CAF1 protein indicating the interacting domains (ID) for HP1 and p60CAF-1, and the acidic domain (AD). (Middle) Structure of the murine Chaf1a gene. Blocks and lines represent exons and introns, respectively. A star indicates the translation initiation site. Below is shown the Chaf1a targeting vector, which includes genomic DNA homology regions (5 HR and 3 HR), the diphtheria toxin (DT), and neomycin selection genes. Recombined (Rec) ES cells and mice were identified by Southern blot using ScaI (S) and the indicated probe. (B) Breeding strategy used for the production of E4 Chaf1a −/− embryos. Genotyping was performed by PCR using the three oligonucleotide primers indicated in (A) (1, 2, and 3). An example of the result of a genotyping experiment is shown. (C) Immunodetection of p150CAF-1 (green) and HP1α (red) in E4 embryos derived from Chaf1a +/− intercrosses. Because Chaf1a +/+ and Chaf1a +/− embryos both stain positively for the presence of p150CAF-1, they are both designated as wild-type. p150CAF-1 expression, which indicates ongoing S phase, can be detected in most cells within the wild-type blastocyst (upper panel). The lower panel shows a 12-cell embryo labeling negatively for p150CAF-1. Only nonspecific background labeling can be observed. In each panel, the right-hand image shows the merge between the HP1α fluorescence and DAPI-stained DNA in blue. Pink color indicates the association of HP1 with DAPI-dense material. The bottom of each panel shows the magnification of a nucleus selected from the above embryo (white square). The arrowhead indicates the typical heterochromatin foci revealed by DAPI and HP1α staining in wild-type embryos. These foci are not visible in Chaf1a −/− embryos. DAPI and HP1α staining are diffuse within the nucleus of p150CAF-1-depleted embryos, with enrichment at the nuclear periphery, revealing abnormal heterochromatin organization. Scale bars represent 10 μm. (E) Wild-type embryos isolated at embryonic day 2 (E2, two cells), E2.5 (four cells), E3 (eight cells), E3.5 (16 cells), and E4 (32 cells) are shown. Heterochromatin was monitored by DAPI staining (upper panel) and HP1 immunolabeling (in red, lower panel). (F) Magnification of a nucleus (DAPI-stained) representative of each stage. The right-hand panel shows the nucleus of an ES cell. Scale bar represents 10 μm. Strikingly, we found that the nuclear organization of heterochromatin appeared abnormal in the nuclei of Chaf1a −/− embryos.
T8247 9725-9735 RB denotes Strikingly
T8248 9740-9745 VBD denotes found
T8249 9735-9737 , denotes ,
T8250 9737-9739 PRP denotes we
T8251 9746-9750 IN denotes that
T8252 9795-9803 VBD denotes appeared
T8253 9751-9754 DT denotes the
T8254 9763-9775 NN denotes organization
T8255 9755-9762 JJ denotes nuclear
T8256 9776-9778 IN denotes of
T8257 9779-9794 NN denotes heterochromatin
T8258 9804-9812 JJ denotes abnormal
T8259 9813-9815 IN denotes in
T8260 9816-9819 DT denotes the
T8261 9820-9826 NNS denotes nuclei
T8262 9827-9829 IN denotes of
T8263 9830-9836 NN denotes Chaf1a
T8264 9841-9848 NNS denotes embryos
T8265 9837-9838 SYM denotes
T8266 9838-9839 HYPH denotes /
T8267 9839-9840 SYM denotes
T8268 9848-9849 . denotes .
T8269 9849-10046 sentence denotes Pericentric heterochromatin, the major component of constitutive heterochromatin, can easily be visualized in interphase nuclei by the fluorochrome DAPI and by immunostaining with HP1α [16,17–19].
T8270 9850-9861 JJ denotes Pericentric
T8271 9862-9877 NN denotes heterochromatin
T8272 9946-9956 VBN denotes visualized
T8273 9877-9879 , denotes ,
T8274 9879-9882 DT denotes the
T8275 9889-9898 NN denotes component
T8276 9883-9888 JJ denotes major
T8277 9899-9901 IN denotes of
T8278 9902-9914 JJ denotes constitutive
T8279 9915-9930 NN denotes heterochromatin
T8280 9930-9932 , denotes ,
T8281 9932-9935 MD denotes can
T8282 9936-9942 RB denotes easily
T8283 9943-9945 VB denotes be
T8284 9957-9959 IN denotes in
T8285 9960-9970 NN denotes interphase
T8286 9971-9977 NNS denotes nuclei
T8287 9978-9980 IN denotes by
T8288 9981-9984 DT denotes the
T8289 9998-10002 NN denotes DAPI
T8290 9985-9997 NN denotes fluorochrome
T8291 10003-10006 CC denotes and
T8292 10007-10009 IN denotes by
T8293 10010-10024 VBG denotes immunostaining
T8294 10025-10029 IN denotes with
T8295 10030-10034 NN denotes HP1α
T8296 10035-10036 -LRB- denotes [
T8297 10036-10038 CD denotes 16
T8298 10038-10039 , denotes ,
T8299 10039-10041 CD denotes 17
T8300 10041-10042 SYM denotes
T8301 10042-10044 CD denotes 19
T8302 10044-10045 -RRB- denotes ]
T8303 10045-10046 . denotes .
T8304 10046-10275 sentence denotes In wild-type blastocysts and in mouse somatic cells, pericentric heterochromatin domains cluster together and form higher-order chromatin structures called chromocenters [20], which are visualized as DAPI-dense foci (Figure 1C).
T8305 10047-10049 IN denotes In
T8306 10136-10143 VBP denotes cluster
T8307 10050-10054 JJ denotes wild
T8308 10055-10059 NN denotes type
T8309 10054-10055 HYPH denotes -
T8310 10060-10071 NNS denotes blastocysts
T8311 10072-10075 CC denotes and
T8312 10076-10078 IN denotes in
T8313 10079-10084 NN denotes mouse
T8314 10093-10098 NNS denotes cells
T8315 10085-10092 JJ denotes somatic
T8316 10098-10100 , denotes ,
T8317 10100-10111 JJ denotes pericentric
T8318 10128-10135 NNS denotes domains
T8319 10112-10127 NN denotes heterochromatin
T8320 10144-10152 RB denotes together
T8321 10153-10156 CC denotes and
T8322 10157-10161 VBP denotes form
T8323 10162-10168 JJR denotes higher
T8324 10169-10174 NN denotes order
T8325 10168-10169 HYPH denotes -
T8326 10185-10195 NNS denotes structures
T8327 10175-10184 NN denotes chromatin
T8328 10196-10202 VBN denotes called
T8329 10203-10216 NNS denotes chromocenters
T8330 10217-10218 -LRB- denotes [
T8331 10218-10220 CD denotes 20
T8332 10220-10221 -RRB- denotes ]
T8333 10221-10223 , denotes ,
T8334 10223-10228 WDT denotes which
T8335 10233-10243 VBN denotes visualized
T8336 10229-10232 VBP denotes are
T8337 10244-10246 IN denotes as
T8338 10247-10251 NN denotes DAPI
T8339 10252-10257 JJ denotes dense
T8340 10251-10252 HYPH denotes -
T8341 10258-10262 NNS denotes foci
T8342 10263-10264 -LRB- denotes (
T8343 10271-10273 NN denotes 1C
T8344 10264-10270 NN denotes Figure
T8345 10273-10274 -RRB- denotes )
T8346 10274-10275 . denotes .
T8347 10275-10345 sentence denotes These structures were not detected in Chaf1a −/− embryos (Figure 1D).
T8348 10276-10281 DT denotes These
T8349 10282-10292 NNS denotes structures
T8350 10302-10310 VBN denotes detected
T8351 10293-10297 VBD denotes were
T8352 10298-10301 RB denotes not
T8353 10311-10313 IN denotes in
T8354 10314-10320 NN denotes Chaf1a
T8355 10325-10332 NNS denotes embryos
T8356 10321-10322 SYM denotes
T8357 10322-10323 HYPH denotes /
T8358 10323-10324 SYM denotes
T8359 10333-10334 -LRB- denotes (
T8360 10341-10343 NN denotes 1D
T8361 10334-10340 NN denotes Figure
T8362 10343-10344 -RRB- denotes )
T8363 10344-10345 . denotes .
T8364 10345-10500 sentence denotes Since chromatin architecture and higher-order structures are important for genome function [21], we decided to characterize this phenotype in more detail.
T8365 10346-10351 IN denotes Since
T8366 10403-10406 VBP denotes are
T8367 10352-10361 NN denotes chromatin
T8368 10362-10374 NN denotes architecture
T8369 10375-10378 CC denotes and
T8370 10379-10385 JJR denotes higher
T8371 10386-10391 NN denotes order
T8372 10385-10386 HYPH denotes -
T8373 10392-10402 NNS denotes structures
T8374 10446-10453 VBD denotes decided
T8375 10407-10416 JJ denotes important
T8376 10417-10420 IN denotes for
T8377 10421-10427 NN denotes genome
T8378 10428-10436 NN denotes function
T8379 10437-10438 -LRB- denotes [
T8380 10438-10440 CD denotes 21
T8381 10440-10441 -RRB- denotes ]
T8382 10441-10443 , denotes ,
T8383 10443-10445 PRP denotes we
T8384 10454-10456 TO denotes to
T8385 10457-10469 VB denotes characterize
T8386 10470-10474 DT denotes this
T8387 10475-10484 NN denotes phenotype
T8388 10485-10487 IN denotes in
T8389 10488-10492 JJR denotes more
T8390 10493-10499 NN denotes detail
T8391 10499-10500 . denotes .
T8392 10500-10617 sentence denotes For this purpose, we examined the status of heterochromatin organization between the two-cell and blastocyst stages.
T8393 10501-10504 IN denotes For
T8394 10522-10530 VBD denotes examined
T8395 10505-10509 DT denotes this
T8396 10510-10517 NN denotes purpose
T8397 10517-10519 , denotes ,
T8398 10519-10521 PRP denotes we
T8399 10531-10534 DT denotes the
T8400 10535-10541 NN denotes status
T8401 10542-10544 IN denotes of
T8402 10545-10560 NN denotes heterochromatin
T8403 10561-10573 NN denotes organization
T8404 10574-10581 IN denotes between
T8405 10582-10585 DT denotes the
T8406 10610-10616 NNS denotes stages
T8407 10586-10589 CD denotes two
T8408 10590-10594 NN denotes cell
T8409 10589-10590 HYPH denotes -
T8410 10595-10598 CC denotes and
T8411 10599-10609 NN denotes blastocyst
T8412 10616-10617 . denotes .
T8413 10617-10776 sentence denotes In two-cell stage wild-type embryos, DAPI staining is diffuse and fibrillar, with regions of higher density around the nucleolar precursor bodies (Figure 1E).
T8414 10618-10620 IN denotes In
T8415 10669-10671 VBZ denotes is
T8416 10621-10624 CD denotes two
T8417 10625-10629 NN denotes cell
T8418 10624-10625 HYPH denotes -
T8419 10630-10635 NN denotes stage
T8420 10646-10653 NNS denotes embryos
T8421 10636-10640 JJ denotes wild
T8422 10641-10645 NN denotes type
T8423 10640-10641 HYPH denotes -
T8424 10653-10655 , denotes ,
T8425 10655-10659 NN denotes DAPI
T8426 10660-10668 NN denotes staining
T8427 10672-10679 JJ denotes diffuse
T8428 10680-10683 CC denotes and
T8429 10684-10693 JJ denotes fibrillar
T8430 10693-10695 , denotes ,
T8431 10695-10699 IN denotes with
T8432 10700-10707 NNS denotes regions
T8433 10708-10710 IN denotes of
T8434 10711-10717 JJR denotes higher
T8435 10718-10725 NN denotes density
T8436 10726-10732 IN denotes around
T8437 10733-10736 DT denotes the
T8438 10757-10763 NNS denotes bodies
T8439 10737-10746 JJ denotes nucleolar
T8440 10747-10756 NN denotes precursor
T8441 10764-10765 -LRB- denotes (
T8442 10772-10774 NN denotes 1E
T8443 10765-10771 NN denotes Figure
T8444 10774-10775 -RRB- denotes )
T8445 10775-10776 . denotes .
T8446 10776-10914 sentence denotes Heterochromatin domains are progressively assembled into DAPI-dense foci between the four-cell and 32-cell blastocyst stages (Figure 1F).
T8447 10777-10792 NN denotes Heterochromatin
T8448 10793-10800 NNS denotes domains
T8449 10819-10828 VBN denotes assembled
T8450 10801-10804 VBP denotes are
T8451 10805-10818 RB denotes progressively
T8452 10829-10833 IN denotes into
T8453 10834-10838 NN denotes DAPI
T8454 10839-10844 JJ denotes dense
T8455 10838-10839 HYPH denotes -
T8456 10845-10849 NNS denotes foci
T8457 10850-10857 IN denotes between
T8458 10858-10861 DT denotes the
T8459 10895-10901 NNS denotes stages
T8460 10862-10866 CD denotes four
T8461 10867-10871 NN denotes cell
T8462 10866-10867 HYPH denotes -
T8463 10872-10875 CC denotes and
T8464 10876-10878 CD denotes 32
T8465 10879-10883 NN denotes cell
T8466 10878-10879 HYPH denotes -
T8467 10884-10894 NN denotes blastocyst
T8468 10902-10903 -LRB- denotes (
T8469 10910-10912 NN denotes 1F
T8470 10903-10909 NN denotes Figure
T8471 10912-10913 -RRB- denotes )
T8472 10913-10914 . denotes .
T8473 10914-11049 sentence denotes Localization of HP1α confirmed that the structures visualized by DAPI staining correspond to constitutive heterochromatin (Figure 1E).
T8474 10915-10927 NN denotes Localization
T8475 10936-10945 VBD denotes confirmed
T8476 10928-10930 IN denotes of
T8477 10931-10935 NN denotes HP1α
T8478 10946-10950 IN denotes that
T8479 10994-11004 VBP denotes correspond
T8480 10951-10954 DT denotes the
T8481 10955-10965 NNS denotes structures
T8482 10966-10976 VBN denotes visualized
T8483 10977-10979 IN denotes by
T8484 10980-10984 NN denotes DAPI
T8485 10985-10993 NN denotes staining
T8486 11005-11007 IN denotes to
T8487 11008-11020 JJ denotes constitutive
T8488 11021-11036 NN denotes heterochromatin
T8489 11037-11038 -LRB- denotes (
T8490 11045-11047 NN denotes 1E
T8491 11038-11044 NN denotes Figure
T8492 11047-11048 -RRB- denotes )
T8493 11048-11049 . denotes .
T8494 11049-11205 sentence denotes Thus, the nuclear organization of heterochromatin is dramatically modified during pre-implantation development, between the two-cell and blastocyst stages.
T8495 11050-11054 RB denotes Thus
T8496 11116-11124 VBN denotes modified
T8497 11054-11056 , denotes ,
T8498 11056-11059 DT denotes the
T8499 11068-11080 NN denotes organization
T8500 11060-11067 JJ denotes nuclear
T8501 11081-11083 IN denotes of
T8502 11084-11099 NN denotes heterochromatin
T8503 11100-11102 VBZ denotes is
T8504 11103-11115 RB denotes dramatically
T8505 11125-11131 IN denotes during
T8506 11132-11148 JJ denotes pre-implantation
T8507 11149-11160 NN denotes development
T8508 11160-11162 , denotes ,
T8509 11162-11169 IN denotes between
T8510 11170-11173 DT denotes the
T8511 11198-11204 NNS denotes stages
T8512 11174-11177 CD denotes two
T8513 11178-11182 NN denotes cell
T8514 11177-11178 HYPH denotes -
T8515 11183-11186 CC denotes and
T8516 11187-11197 NN denotes blastocyst
T8517 11204-11205 . denotes .
T8518 11205-11340 sentence denotes In Chaf1a −/− E4 embryos, which are arrested between the eight- and 16-cell stage, DAPI-dense foci were barely detectable (Figure 1D).
T8519 11206-11208 IN denotes In
T8520 11305-11309 VBD denotes were
T8521 11209-11215 NN denotes Chaf1a
T8522 11223-11230 NNS denotes embryos
T8523 11216-11217 SYM denotes
T8524 11217-11218 HYPH denotes /
T8525 11218-11219 SYM denotes
T8526 11220-11222 NN denotes E4
T8527 11230-11232 , denotes ,
T8528 11232-11237 WDT denotes which
T8529 11242-11250 VBN denotes arrested
T8530 11238-11241 VBP denotes are
T8531 11251-11258 IN denotes between
T8532 11259-11262 DT denotes the
T8533 11282-11287 NN denotes stage
T8534 11263-11268 CD denotes eight
T8535 11277-11281 NN denotes cell
T8536 11268-11269 HYPH denotes -
T8537 11270-11273 CC denotes and
T8539 11276-11277 HYPH denotes -
T8540 11287-11289 , denotes ,
T8541 11289-11293 NN denotes DAPI
T8542 11294-11299 JJ denotes dense
T8543 11293-11294 HYPH denotes -
T8544 11300-11304 NNS denotes foci
T8545 11310-11316 RB denotes barely
T8546 11317-11327 JJ denotes detectable
T8547 11328-11329 -LRB- denotes (
T8548 11336-11338 NN denotes 1D
T8549 11329-11335 NN denotes Figure
T8550 11338-11339 -RRB- denotes )
T8551 11339-11340 . denotes .
T8552 11340-11494 sentence denotes Instead, DAPI staining was diffuse within the nucleus, with regions of higher density around the nucleoli and at the periphery of the nuclei (Figure 1D).
T8553 11341-11348 RB denotes Instead
T8554 11364-11367 VBD denotes was
T8555 11348-11350 , denotes ,
T8556 11350-11354 NN denotes DAPI
T8557 11355-11363 NN denotes staining
T8558 11368-11375 JJ denotes diffuse
T8559 11376-11382 IN denotes within
T8560 11383-11386 DT denotes the
T8561 11387-11394 NN denotes nucleus
T8562 11394-11396 , denotes ,
T8563 11396-11400 IN denotes with
T8564 11401-11408 NNS denotes regions
T8565 11409-11411 IN denotes of
T8566 11412-11418 JJR denotes higher
T8567 11419-11426 NN denotes density
T8568 11427-11433 IN denotes around
T8569 11434-11437 DT denotes the
T8570 11438-11446 NNS denotes nucleoli
T8571 11447-11450 CC denotes and
T8572 11451-11453 IN denotes at
T8573 11454-11457 DT denotes the
T8574 11458-11467 NN denotes periphery
T8575 11468-11470 IN denotes of
T8576 11471-11474 DT denotes the
T8577 11475-11481 NNS denotes nuclei
T8578 11482-11483 -LRB- denotes (
T8579 11490-11492 NN denotes 1D
T8580 11483-11489 NN denotes Figure
T8581 11492-11493 -RRB- denotes )
T8582 11493-11494 . denotes .
T8583 11494-11645 sentence denotes Localization of HP1α showed a diffuse pattern similar to the DAPI, with some enrichment at the nuclear periphery, and around the nucleoli (Figure 1D).
T8584 11495-11507 NN denotes Localization
T8585 11516-11522 VBD denotes showed
T8586 11508-11510 IN denotes of
T8587 11511-11515 NN denotes HP1α
T8588 11523-11524 DT denotes a
T8589 11533-11540 NN denotes pattern
T8590 11525-11532 JJ denotes diffuse
T8591 11541-11548 JJ denotes similar
T8592 11549-11551 IN denotes to
T8593 11552-11555 DT denotes the
T8594 11556-11560 NN denotes DAPI
T8595 11560-11562 , denotes ,
T8596 11562-11566 IN denotes with
T8597 11567-11571 DT denotes some
T8598 11572-11582 NN denotes enrichment
T8599 11583-11585 IN denotes at
T8600 11586-11589 DT denotes the
T8601 11598-11607 NN denotes periphery
T8602 11590-11597 JJ denotes nuclear
T8603 11607-11609 , denotes ,
T8604 11609-11612 CC denotes and
T8605 11613-11619 IN denotes around
T8606 11620-11623 DT denotes the
T8607 11624-11632 NNS denotes nucleoli
T8608 11633-11634 -LRB- denotes (
T8609 11641-11643 NN denotes 1D
T8610 11634-11640 NN denotes Figure
T8611 11643-11644 -RRB- denotes )
T8612 11644-11645 . denotes .
T8613 11645-11843 sentence denotes This abnormal organization of heterochromatin in Chaf1a −/− embryos is reminiscent of the heterochromatin organization found in two- to four-cell stage wild-type embryos (compare Figure 1D and 1F).
T8614 11646-11650 DT denotes This
T8615 11660-11672 NN denotes organization
T8616 11651-11659 JJ denotes abnormal
T8617 11714-11716 VBZ denotes is
T8618 11673-11675 IN denotes of
T8619 11676-11691 NN denotes heterochromatin
T8620 11692-11694 IN denotes in
T8621 11695-11701 NN denotes Chaf1a
T8622 11706-11713 NNS denotes embryos
T8623 11702-11703 SYM denotes
T8624 11703-11704 HYPH denotes /
T8625 11704-11705 SYM denotes
T8626 11717-11728 JJ denotes reminiscent
T8627 11729-11731 IN denotes of
T8628 11732-11735 DT denotes the
T8629 11752-11764 NN denotes organization
T8630 11736-11751 NN denotes heterochromatin
T8631 11765-11770 VBN denotes found
T8632 11771-11773 IN denotes in
T8633 11774-11777 CD denotes two
T8634 11782-11786 CD denotes four
T8635 11777-11778 HYPH denotes -
T8636 11779-11781 IN denotes to
T8637 11787-11791 NN denotes cell
T8638 11786-11787 HYPH denotes -
T8639 11792-11797 NN denotes stage
T8640 11808-11815 NNS denotes embryos
T8641 11798-11802 JJ denotes wild
T8642 11803-11807 NN denotes type
T8643 11802-11803 HYPH denotes -
T8644 11816-11817 -LRB- denotes (
T8645 11817-11824 VB denotes compare
T8646 11825-11831 NN denotes Figure
T8647 11832-11834 NN denotes 1D
T8648 11835-11838 CC denotes and
T8649 11839-11841 NN denotes 1F
T8650 11841-11842 -RRB- denotes )
T8651 11842-11843 . denotes .
T8652 11843-12047 sentence denotes These data evidence a key role for p150CAF-1 during pre-implantation development, and reveal that this protein is required for the proper 3-D organization of heterochromatin within embryonic cell nuclei.
T8653 11844-11849 DT denotes These
T8654 11850-11854 NNS denotes data
T8655 11855-11863 VBP denotes evidence
T8656 11864-11865 DT denotes a
T8657 11870-11874 NN denotes role
T8658 11866-11869 JJ denotes key
T8659 11875-11878 IN denotes for
T8660 11879-11886 NN denotes p150CAF
T8661 11886-11887 HYPH denotes -
T8662 11887-11888 CD denotes 1
T8663 11889-11895 IN denotes during
T8664 11896-11912 JJ denotes pre-implantation
T8665 11913-11924 NN denotes development
T8666 11924-11926 , denotes ,
T8667 11926-11929 CC denotes and
T8668 11930-11936 VBP denotes reveal
T8669 11937-11941 IN denotes that
T8670 11958-11966 VBN denotes required
T8671 11942-11946 DT denotes this
T8672 11947-11954 NN denotes protein
T8673 11955-11957 VBZ denotes is
T8674 11967-11970 IN denotes for
T8675 11971-11974 DT denotes the
T8676 11986-11998 NN denotes organization
T8677 11975-11981 JJ denotes proper
T8678 11982-11983 CD denotes 3
T8679 11984-11985 NN denotes D
T8680 11983-11984 HYPH denotes -
T8681 11999-12001 IN denotes of
T8682 12002-12017 NN denotes heterochromatin
T8683 12018-12024 IN denotes within
T8684 12025-12034 JJ denotes embryonic
T8685 12040-12046 NNS denotes nuclei
T8686 12035-12039 NN denotes cell
T8687 12046-12047 . denotes .
T8688 12047-12196 sentence denotes Next, we wondered whether a similar requirement for CAF-1 could also be observed in ES cells, which are derived from the blastocyst inner cell mass.
T8689 12048-12052 RB denotes Next
T8690 12057-12065 VBD denotes wondered
T8691 12052-12054 , denotes ,
T8692 12054-12056 PRP denotes we
T8693 12066-12073 IN denotes whether
T8694 12120-12128 VBN denotes observed
T8695 12074-12075 DT denotes a
T8696 12084-12095 NN denotes requirement
T8697 12076-12083 JJ denotes similar
T8698 12096-12099 IN denotes for
T8699 12100-12103 NN denotes CAF
T8700 12103-12104 HYPH denotes -
T8701 12104-12105 CD denotes 1
T8702 12106-12111 MD denotes could
T8703 12112-12116 RB denotes also
T8704 12117-12119 VB denotes be
T8705 12129-12131 IN denotes in
T8706 12132-12134 NN denotes ES
T8707 12135-12140 NNS denotes cells
T8708 12140-12142 , denotes ,
T8709 12142-12147 WDT denotes which
T8710 12152-12159 VBN denotes derived
T8711 12148-12151 VBP denotes are
T8712 12160-12164 IN denotes from
T8713 12165-12168 DT denotes the
T8714 12191-12195 NN denotes mass
T8715 12169-12179 NN denotes blastocyst
T8716 12180-12185 JJ denotes inner
T8717 12186-12190 NN denotes cell
T8718 12195-12196 . denotes .
T8719 12196-12372 sentence denotes Given the early developmental arrest observed in Chaf1a −/− embryos, such cells could not be derived directly from null embryos, and we thus used an RNAi strategy (Figure 2A).
T8720 12197-12202 VBN denotes Given
T8721 12290-12297 VBN denotes derived
T8722 12203-12206 DT denotes the
T8723 12227-12233 NN denotes arrest
T8724 12207-12212 JJ denotes early
T8725 12213-12226 JJ denotes developmental
T8726 12234-12242 VBN denotes observed
T8727 12243-12245 IN denotes in
T8728 12246-12252 NN denotes Chaf1a
T8729 12257-12264 NNS denotes embryos
T8730 12253-12254 SYM denotes
T8731 12254-12255 HYPH denotes /
T8732 12255-12256 SYM denotes
T8733 12264-12266 , denotes ,
T8734 12266-12270 JJ denotes such
T8735 12271-12276 NNS denotes cells
T8736 12277-12282 MD denotes could
T8737 12283-12286 RB denotes not
T8738 12287-12289 VB denotes be
T8739 12298-12306 RB denotes directly
T8740 12307-12311 IN denotes from
T8741 12312-12316 JJ denotes null
T8742 12317-12324 NNS denotes embryos
T8743 12324-12326 , denotes ,
T8744 12326-12329 CC denotes and
T8745 12330-12332 PRP denotes we
T8746 12338-12342 VBD denotes used
T8747 12333-12337 RB denotes thus
T8748 12343-12345 DT denotes an
T8749 12351-12359 NN denotes strategy
T8750 12346-12350 NN denotes RNAi
T8751 12360-12361 -LRB- denotes (
T8752 12368-12370 NN denotes 2A
T8753 12361-12367 NN denotes Figure
T8754 12370-12371 -RRB- denotes )
T8755 12371-12372 . denotes .
T8756 12372-12452 sentence denotes p150CAF-1 knockdown in ES cells was quantified by Western blot analysis and IF.
T8757 12373-12380 NN denotes p150CAF
T8758 12383-12392 NN denotes knockdown
T8759 12380-12381 HYPH denotes -
T8760 12381-12382 CD denotes 1
T8761 12409-12419 VBN denotes quantified
T8762 12393-12395 IN denotes in
T8763 12396-12398 NN denotes ES
T8764 12399-12404 NNS denotes cells
T8765 12405-12408 VBD denotes was
T8766 12420-12422 IN denotes by
T8767 12423-12430 NNP denotes Western
T8768 12431-12435 NN denotes blot
T8769 12436-12444 NN denotes analysis
T8770 12445-12448 CC denotes and
T8771 12449-12451 NN denotes IF
T8772 12451-12452 . denotes .
T8773 12452-12465 sentence denotes (Figure S1).
T8774 12453-12454 -LRB- denotes (
T8775 12461-12463 NN denotes S1
T8776 12454-12460 NN denotes Figure
T8777 12463-12464 -RRB- denotes )
T8778 12464-12465 . denotes .
T8779 12465-12569 sentence denotes p150CAF-1 RNAi-depleted ES cells displayed a phenotype very similar to the cells of Chaf1a −/− E4 mice.
T8780 12466-12473 NN denotes p150CAF
T8781 12493-12498 NNS denotes cells
T8782 12473-12474 HYPH denotes -
T8783 12474-12475 CD denotes 1
T8784 12476-12480 NN denotes RNAi
T8785 12481-12489 VBN denotes depleted
T8786 12480-12481 HYPH denotes -
T8787 12490-12492 NN denotes ES
T8788 12499-12508 VBD denotes displayed
T8789 12509-12510 DT denotes a
T8790 12511-12520 NN denotes phenotype
T8791 12521-12525 RB denotes very
T8792 12526-12533 JJ denotes similar
T8793 12534-12536 IN denotes to
T8794 12537-12540 DT denotes the
T8795 12541-12546 NNS denotes cells
T8796 12547-12549 IN denotes of
T8797 12550-12556 NN denotes Chaf1a
T8798 12564-12568 NNS denotes mice
T8799 12557-12558 SYM denotes
T8800 12558-12559 HYPH denotes /
T8801 12559-12560 SYM denotes
T8802 12561-12563 NN denotes E4
T8803 12568-12569 . denotes .
T8804 12569-12712 sentence denotes DAPI-dense foci were lost, and we observed diffuse HP1α and DAPI staining around the nucleoli and at the periphery of the nucleus (Figure 2B).
T8805 12570-12574 NN denotes DAPI
T8806 12575-12580 JJ denotes dense
T8807 12574-12575 HYPH denotes -
T8808 12581-12585 NNS denotes foci
T8809 12591-12595 VBN denotes lost
T8810 12586-12590 VBD denotes were
T8811 12595-12597 , denotes ,
T8812 12597-12600 CC denotes and
T8813 12601-12603 PRP denotes we
T8814 12604-12612 VBD denotes observed
T8815 12613-12620 JJ denotes diffuse
T8816 12635-12643 NN denotes staining
T8817 12621-12625 NN denotes HP1α
T8818 12626-12629 CC denotes and
T8819 12630-12634 NN denotes DAPI
T8820 12644-12650 IN denotes around
T8821 12651-12654 DT denotes the
T8822 12655-12663 NNS denotes nucleoli
T8823 12664-12667 CC denotes and
T8824 12668-12670 IN denotes at
T8825 12671-12674 DT denotes the
T8826 12675-12684 NN denotes periphery
T8827 12685-12687 IN denotes of
T8828 12688-12691 DT denotes the
T8829 12692-12699 NN denotes nucleus
T8830 12700-12701 -LRB- denotes (
T8831 12708-12710 NN denotes 2B
T8832 12701-12707 NN denotes Figure
T8833 12710-12711 -RRB- denotes )
T8834 12711-12712 . denotes .
T8835 12712-12870 sentence denotes This result indicates that p150CAF-1 is essential for nuclear organization of heterochromatin in ES cells in a similar way to early pre-implantation embryos.
T8836 12713-12717 DT denotes This
T8837 12718-12724 NN denotes result
T8838 12725-12734 VBZ denotes indicates
T8839 12735-12739 IN denotes that
T8840 12750-12752 VBZ denotes is
T8841 12740-12747 NN denotes p150CAF
T8842 12747-12748 HYPH denotes -
T8843 12748-12749 CD denotes 1
T8844 12753-12762 JJ denotes essential
T8845 12763-12766 IN denotes for
T8846 12767-12774 JJ denotes nuclear
T8847 12775-12787 NN denotes organization
T8848 12788-12790 IN denotes of
T8849 12791-12806 NN denotes heterochromatin
T8850 12807-12809 IN denotes in
T8851 12810-12812 NN denotes ES
T8852 12813-12818 NNS denotes cells
T8853 12819-12821 IN denotes in
T8854 12822-12823 DT denotes a
T8855 12832-12835 NN denotes way
T8856 12824-12831 JJ denotes similar
T8857 12836-12838 IN denotes to
T8858 12839-12844 JJ denotes early
T8859 12862-12869 NNS denotes embryos
T8860 12845-12861 JJ denotes pre-implantation
T8861 12869-12870 . denotes .
T8862 12870-13043 sentence denotes Surprisingly, we did not observe this severe alteration in heterochromatin organization in primary mouse embryonic fibroblasts (MEFs) following p150CAF-1 depletion by RNAi.
T8863 12871-12883 RB denotes Surprisingly
T8864 12896-12903 VB denotes observe
T8865 12883-12885 , denotes ,
T8866 12885-12887 PRP denotes we
T8867 12888-12891 VBD denotes did
T8868 12892-12895 RB denotes not
T8869 12904-12908 DT denotes this
T8870 12916-12926 NN denotes alteration
T8871 12909-12915 JJ denotes severe
T8872 12927-12929 IN denotes in
T8873 12930-12945 NN denotes heterochromatin
T8874 12946-12958 NN denotes organization
T8875 12959-12961 IN denotes in
T8876 12962-12969 JJ denotes primary
T8877 12986-12997 NNS denotes fibroblasts
T8878 12970-12975 NN denotes mouse
T8879 12976-12985 JJ denotes embryonic
T8880 12998-12999 -LRB- denotes (
T8881 12999-13003 NNS denotes MEFs
T8882 13003-13004 -RRB- denotes )
T8883 13005-13014 VBG denotes following
T8884 13015-13022 NN denotes p150CAF
T8885 13025-13034 NN denotes depletion
T8886 13022-13023 HYPH denotes -
T8887 13023-13024 CD denotes 1
T8888 13035-13037 IN denotes by
T8889 13038-13042 NN denotes RNAi
T8890 13042-13043 . denotes .
T8891 13043-13226 sentence denotes p150CAF-1 depletion in MEFs resulted in a strong inhibition of cell proliferation (unpublished data), but did not alter the clustering of heterochromatin domains (Figures 2C and S2).
T8892 13044-13051 NN denotes p150CAF
T8893 13054-13063 NN denotes depletion
T8894 13051-13052 HYPH denotes -
T8895 13052-13053 CD denotes 1
T8896 13072-13080 VBD denotes resulted
T8897 13064-13066 IN denotes in
T8898 13067-13071 NNS denotes MEFs
T8899 13081-13083 IN denotes in
T8900 13084-13085 DT denotes a
T8901 13093-13103 NN denotes inhibition
T8902 13086-13092 JJ denotes strong
T8903 13104-13106 IN denotes of
T8904 13107-13111 NN denotes cell
T8905 13112-13125 NN denotes proliferation
T8906 13126-13127 -LRB- denotes (
T8907 13139-13143 NNS denotes data
T8908 13127-13138 JJ denotes unpublished
T8909 13143-13144 -RRB- denotes )
T8910 13144-13146 , denotes ,
T8911 13146-13149 CC denotes but
T8912 13150-13153 VBD denotes did
T8913 13158-13163 VB denotes alter
T8914 13154-13157 RB denotes not
T8915 13164-13167 DT denotes the
T8916 13168-13178 NN denotes clustering
T8917 13179-13181 IN denotes of
T8918 13182-13197 NN denotes heterochromatin
T8919 13198-13205 NNS denotes domains
T8920 13206-13207 -LRB- denotes (
T8921 13215-13217 NN denotes 2C
T8922 13207-13214 NNS denotes Figures
T8923 13218-13221 CC denotes and
T8924 13222-13224 NN denotes S2
T8925 13224-13225 -RRB- denotes )
T8926 13225-13226 . denotes .
T8927 13226-13320 sentence denotes Similarly, p150CAF-1 depletion in 3T3 cells did not affect heterochromatin organization [16].
T8928 13227-13236 RB denotes Similarly
T8929 13279-13285 VB denotes affect
T8930 13236-13238 , denotes ,
T8931 13238-13245 NN denotes p150CAF
T8932 13248-13257 NN denotes depletion
T8933 13245-13246 HYPH denotes -
T8934 13246-13247 CD denotes 1
T8935 13258-13260 IN denotes in
T8936 13261-13264 NN denotes 3T3
T8937 13265-13270 NNS denotes cells
T8938 13271-13274 VBD denotes did
T8939 13275-13278 RB denotes not
T8940 13286-13301 NN denotes heterochromatin
T8941 13302-13314 NN denotes organization
T8942 13315-13316 -LRB- denotes [
T8943 13316-13318 CD denotes 16
T8944 13318-13319 -RRB- denotes ]
T8945 13319-13320 . denotes .
T8946 13320-13410 sentence denotes These observations reveal a specific function for CAF-1 in the early embryo and ES cells.
T8947 13321-13326 DT denotes These
T8948 13327-13339 NNS denotes observations
T8949 13340-13346 VBP denotes reveal
T8950 13347-13348 DT denotes a
T8951 13358-13366 NN denotes function
T8952 13349-13357 JJ denotes specific
T8953 13367-13370 IN denotes for
T8954 13371-13374 NN denotes CAF
T8955 13374-13375 HYPH denotes -
T8956 13375-13376 CD denotes 1
T8957 13377-13379 IN denotes in
T8958 13380-13383 DT denotes the
T8959 13390-13396 NN denotes embryo
T8960 13384-13389 JJ denotes early
T8961 13397-13400 CC denotes and
T8962 13401-13403 NN denotes ES
T8963 13404-13409 NNS denotes cells
T8964 13409-13410 . denotes .
T8965 13410-14893 sentence denotes Figure 2 Depletion of p150CAF-1 in ES Cells Results in a Severe Alteration of Heterochromatin Organization (A) Strategy used to deplete p150CAF-1 by RNAi in ES cells. The siRNA expression vector includes a puromycin selection cassette (Puro), the mouse H1 promoter, and the siRNA encoding sequence. ES cells were kept under puromycin selection during 48 h following transfection. (B) Abnormal heterochromatin organization in p150CAF-1-depleted ES cells. Immunodetection of p150CAF-1 (green) and HP1α (red) in ES cells transfected with control (cont) and p150CAF-1 siRNA. siRNA expression results in efficient p150CAF-1 depletion. The right-hand image shows the merge between HP1α fluorescence and DAPI-stained DNA in blue. Scale bar = 10 μm. (C) Heterochromatin organization is not altered in p150CAF-1-depleted MEFs. Immunodetection of p150CAF-1 (green) and HP1α (red) in MEFs transfected with control (cont) or p150CAF-1 siRNA. The right-hand image shows the merge between HP1α fluorescence and DAPI-stained DNA in blue. (D) PML bodies are not altered in p150CAF-1-depleted ES cells. Immunodetection of PML (red) in ES cells transfected with control (cont) or p150CAF-1 siRNA. The right-hand image shows the merge between PML fluorescence and DAPI-stained DNA in blue. We also wondered whether loss of p150CAF-1 in ES cells specifically affects the heterochromatin nuclear subcompartment, or whether it might result in a more global loss of nuclear organization and architecture.
T8966 14683-14685 PRP denotes We
T8967 14691-14699 VBD denotes wondered
T8968 14686-14690 RB denotes also
T8969 14700-14707 IN denotes whether
T8970 14751-14758 VBZ denotes affects
T8971 14708-14712 NN denotes loss
T8972 14713-14715 IN denotes of
T8973 14716-14723 NN denotes p150CAF
T8974 14723-14724 HYPH denotes -
T8975 14724-14725 CD denotes 1
T8976 14726-14728 IN denotes in
T8977 14729-14731 NN denotes ES
T8978 14732-14737 NNS denotes cells
T8979 14738-14750 RB denotes specifically
T8980 14759-14762 DT denotes the
T8981 14787-14801 NN denotes subcompartment
T8982 14763-14778 NN denotes heterochromatin
T8983 14779-14786 JJ denotes nuclear
T8984 14801-14803 , denotes ,
T8985 14803-14805 CC denotes or
T8986 14806-14813 IN denotes whether
T8987 14823-14829 VB denotes result
T8988 14814-14816 PRP denotes it
T8989 14817-14822 MD denotes might
T8990 14830-14832 IN denotes in
T8991 14833-14834 DT denotes a
T8992 14847-14851 NN denotes loss
T8993 14835-14839 RBR denotes more
T8994 14840-14846 JJ denotes global
T8995 14852-14854 IN denotes of
T8996 14855-14862 JJ denotes nuclear
T8997 14863-14875 NN denotes organization
T8998 14876-14879 CC denotes and
T8999 14880-14892 NN denotes architecture
T9000 14892-14893 . denotes .
T9001 14893-15072 sentence denotes We used a specific antibody against the promyelocytic leukemia (PML) protein to study the fate of the PML nuclear bodies, which are well-characterized subnuclear structures [22].
T9002 14894-14896 PRP denotes We
T9003 14897-14901 VBD denotes used
T9004 14902-14903 DT denotes a
T9005 14913-14921 NN denotes antibody
T9006 14904-14912 JJ denotes specific
T9007 14922-14929 IN denotes against
T9008 14930-14933 DT denotes the
T9009 14963-14970 NN denotes protein
T9010 14934-14947 JJ denotes promyelocytic
T9011 14948-14956 NN denotes leukemia
T9012 14957-14958 -LRB- denotes (
T9013 14958-14961 NN denotes PML
T9014 14961-14962 -RRB- denotes )
T9015 14971-14973 TO denotes to
T9016 14974-14979 VB denotes study
T9017 14980-14983 DT denotes the
T9018 14984-14988 NN denotes fate
T9019 14989-14991 IN denotes of
T9020 14992-14995 DT denotes the
T9021 15008-15014 NNS denotes bodies
T9022 14996-14999 NN denotes PML
T9023 15000-15007 JJ denotes nuclear
T9024 15014-15016 , denotes ,
T9025 15016-15021 WDT denotes which
T9026 15022-15025 VBP denotes are
T9027 15026-15030 RB denotes well
T9028 15031-15044 VBN denotes characterized
T9029 15030-15031 HYPH denotes -
T9030 15056-15066 NNS denotes structures
T9031 15045-15055 JJ denotes subnuclear
T9032 15067-15068 -LRB- denotes [
T9033 15068-15070 CD denotes 22
T9034 15070-15071 -RRB- denotes ]
T9035 15071-15072 . denotes .
T9036 15072-15233 sentence denotes We could not detect any significant difference in the distribution and aspect of PML nuclear bodies between control and p150CAF-1-depleted ES cells (Figure 2D).
T9037 15073-15075 PRP denotes We
T9038 15086-15092 VB denotes detect
T9039 15076-15081 MD denotes could
T9040 15082-15085 RB denotes not
T9041 15093-15096 DT denotes any
T9042 15109-15119 NN denotes difference
T9043 15097-15108 JJ denotes significant
T9044 15120-15122 IN denotes in
T9045 15123-15126 DT denotes the
T9046 15127-15139 NN denotes distribution
T9047 15140-15143 CC denotes and
T9048 15144-15150 NN denotes aspect
T9049 15151-15153 IN denotes of
T9050 15154-15157 NN denotes PML
T9051 15166-15172 NNS denotes bodies
T9052 15158-15165 JJ denotes nuclear
T9053 15173-15180 IN denotes between
T9054 15181-15188 NN denotes control
T9055 15215-15220 NNS denotes cells
T9056 15189-15192 CC denotes and
T9057 15193-15200 NN denotes p150CAF
T9058 15203-15211 VBN denotes depleted
T9059 15200-15201 HYPH denotes -
T9060 15201-15202 CD denotes 1
T9061 15202-15203 HYPH denotes -
T9062 15212-15214 NN denotes ES
T9063 15221-15222 -LRB- denotes (
T9064 15229-15231 NN denotes 2D
T9065 15222-15228 NN denotes Figure
T9066 15231-15232 -RRB- denotes )
T9067 15232-15233 . denotes .
T9068 15233-15333 sentence denotes These data show that nuclear architecture is not globally altered following CAF-1 loss-of-function.
T9069 15234-15239 DT denotes These
T9070 15240-15244 NNS denotes data
T9071 15245-15249 VBP denotes show
T9072 15250-15254 IN denotes that
T9073 15292-15299 VBN denotes altered
T9074 15255-15262 JJ denotes nuclear
T9075 15263-15275 NN denotes architecture
T9076 15276-15278 VBZ denotes is
T9077 15279-15282 RB denotes not
T9078 15283-15291 RB denotes globally
T9079 15300-15309 VBG denotes following
T9080 15310-15313 NN denotes CAF
T9081 15313-15314 HYPH denotes -
T9082 15314-15315 CD denotes 1
T9083 15316-15320 NN denotes loss
T9084 15320-15321 HYPH denotes -
T9085 15321-15323 IN denotes of
T9086 15323-15324 HYPH denotes -
T9087 15324-15332 NN denotes function
T9088 15332-15333 . denotes .
T9089 15333-15508 sentence denotes In addition, Western blot analysis revealed that CAF-1 depletion did not result in altered levels of chromatin architectural proteins such as histone H3 and HP1α (Figure S1).
T9090 15334-15336 IN denotes In
T9091 15369-15377 VBD denotes revealed
T9092 15337-15345 NN denotes addition
T9093 15345-15347 , denotes ,
T9094 15347-15354 NNP denotes Western
T9095 15355-15359 NN denotes blot
T9096 15360-15368 NN denotes analysis
T9097 15378-15382 IN denotes that
T9098 15407-15413 VB denotes result
T9099 15383-15386 NN denotes CAF
T9100 15389-15398 NN denotes depletion
T9101 15386-15387 HYPH denotes -
T9102 15387-15388 CD denotes 1
T9103 15399-15402 VBD denotes did
T9104 15403-15406 RB denotes not
T9105 15414-15416 IN denotes in
T9106 15417-15424 VBN denotes altered
T9107 15425-15431 NNS denotes levels
T9108 15432-15434 IN denotes of
T9109 15435-15444 NN denotes chromatin
T9110 15459-15467 NN denotes proteins
T9111 15445-15458 JJ denotes architectural
T9112 15468-15472 JJ denotes such
T9113 15473-15475 IN denotes as
T9114 15476-15483 NN denotes histone
T9115 15484-15486 NN denotes H3
T9116 15487-15490 CC denotes and
T9117 15491-15495 NN denotes HP1α
T9118 15496-15497 -LRB- denotes (
T9119 15504-15506 NN denotes S1
T9120 15497-15503 NN denotes Figure
T9121 15506-15507 -RRB- denotes )
T9122 15507-15508 . denotes .
T9123 15508-15653 sentence denotes Thus, CAF-1 is specifically required in early embryos and in ES cells for the proper organization of the heterochromatin subnuclear compartment.
T9124 15509-15513 RB denotes Thus
T9125 15537-15545 VBN denotes required
T9126 15513-15515 , denotes ,
T9127 15515-15518 NN denotes CAF
T9128 15518-15519 HYPH denotes -
T9129 15519-15520 CD denotes 1
T9130 15521-15523 VBZ denotes is
T9131 15524-15536 RB denotes specifically
T9132 15546-15548 IN denotes in
T9133 15549-15554 JJ denotes early
T9134 15555-15562 NNS denotes embryos
T9135 15563-15566 CC denotes and
T9136 15567-15569 IN denotes in
T9137 15570-15572 NN denotes ES
T9138 15573-15578 NNS denotes cells
T9139 15579-15582 IN denotes for
T9140 15583-15586 DT denotes the
T9141 15594-15606 NN denotes organization
T9142 15587-15593 JJ denotes proper
T9143 15607-15609 IN denotes of
T9144 15610-15613 DT denotes the
T9145 15641-15652 NN denotes compartment
T9146 15614-15629 NN denotes heterochromatin
T9147 15630-15640 JJ denotes subnuclear
T9148 15652-15653 . denotes .
T9149 15653-15779 sentence denotes Previous studies performed in mammalian cell lines showed that CAF-1 activity is required for S phase progression [16,23,24].
T9150 15654-15662 JJ denotes Previous
T9151 15663-15670 NNS denotes studies
T9152 15705-15711 VBD denotes showed
T9153 15671-15680 VBN denotes performed
T9154 15681-15683 IN denotes in
T9155 15684-15693 JJ denotes mammalian
T9156 15699-15704 NNS denotes lines
T9157 15694-15698 NN denotes cell
T9158 15712-15716 IN denotes that
T9159 15735-15743 VBN denotes required
T9160 15717-15720 NN denotes CAF
T9161 15723-15731 NN denotes activity
T9162 15720-15721 HYPH denotes -
T9163 15721-15722 CD denotes 1
T9164 15732-15734 VBZ denotes is
T9165 15744-15747 IN denotes for
T9166 15748-15749 NN denotes S
T9167 15750-15755 NN denotes phase
T9168 15756-15767 NN denotes progression
T9169 15768-15769 -LRB- denotes [
T9170 15775-15777 CD denotes 24
T9171 15769-15771 CD denotes 16
T9172 15771-15772 , denotes ,
T9173 15772-15774 CD denotes 23
T9174 15774-15775 , denotes ,
T9175 15777-15778 -RRB- denotes ]
T9176 15778-15779 . denotes .
T9177 15779-16155 sentence denotes We show here that 3 d after transfection of the RNAi vector, p150CAF-1-depleted cells (identified by a complete absence of CAF-1 IF signal) appear still active for replication, as revealed by incorporation of the thymidine analog bromodeoxyuridine (BrdU) (Figure 3A), the PCNA (proliferating cell nuclear antigen) pattern (Figure 3B), and flow cytometry analysis (Figure 3C).
T9178 15780-15782 PRP denotes We
T9179 15783-15787 VBP denotes show
T9180 15788-15792 RB denotes here
T9181 15793-15797 IN denotes that
T9182 15920-15926 VBP denotes appear
T9183 15798-15799 CD denotes 3
T9184 15800-15801 NN denotes d
T9185 15802-15807 IN denotes after
T9186 15808-15820 NN denotes transfection
T9187 15821-15823 IN denotes of
T9188 15824-15827 DT denotes the
T9189 15833-15839 NN denotes vector
T9190 15828-15832 NN denotes RNAi
T9191 15839-15841 , denotes ,
T9192 15841-15848 NN denotes p150CAF
T9193 15851-15859 VBN denotes depleted
T9194 15848-15849 HYPH denotes -
T9195 15849-15850 CD denotes 1
T9196 15850-15851 HYPH denotes -
T9197 15860-15865 NNS denotes cells
T9198 15866-15867 -LRB- denotes (
T9199 15867-15877 VBN denotes identified
T9200 15878-15880 IN denotes by
T9201 15881-15882 DT denotes a
T9202 15892-15899 NN denotes absence
T9203 15883-15891 JJ denotes complete
T9204 15900-15902 IN denotes of
T9205 15903-15906 NN denotes CAF
T9206 15912-15918 NN denotes signal
T9207 15906-15907 HYPH denotes -
T9208 15907-15908 CD denotes 1
T9209 15909-15911 NN denotes IF
T9210 15918-15919 -RRB- denotes )
T9211 15927-15932 RB denotes still
T9212 15933-15939 JJ denotes active
T9213 15940-15943 IN denotes for
T9214 15944-15955 NN denotes replication
T9215 15955-15957 , denotes ,
T9216 15957-15959 IN denotes as
T9217 15960-15968 VBN denotes revealed
T9218 15969-15971 IN denotes by
T9219 15972-15985 NN denotes incorporation
T9220 15986-15988 IN denotes of
T9221 15989-15992 DT denotes the
T9222 16003-16009 NN denotes analog
T9223 15993-16002 NN denotes thymidine
T9224 16010-16027 NN denotes bromodeoxyuridine
T9225 16028-16029 -LRB- denotes (
T9226 16029-16033 NN denotes BrdU
T9227 16033-16034 -RRB- denotes )
T9228 16035-16036 -LRB- denotes (
T9229 16043-16045 NN denotes 3A
T9230 16036-16042 NN denotes Figure
T9231 16045-16046 -RRB- denotes )
T9232 16046-16048 , denotes ,
T9233 16048-16051 DT denotes the
T9234 16094-16101 NN denotes pattern
T9235 16052-16056 NN denotes PCNA
T9236 16057-16058 -LRB- denotes (
T9237 16058-16071 VBG denotes proliferating
T9238 16085-16092 NN denotes antigen
T9239 16072-16076 NN denotes cell
T9240 16077-16084 JJ denotes nuclear
T9241 16092-16093 -RRB- denotes )
T9242 16102-16103 -LRB- denotes (
T9243 16110-16112 NN denotes 3B
T9244 16103-16109 NN denotes Figure
T9245 16112-16113 -RRB- denotes )
T9246 16113-16115 , denotes ,
T9247 16115-16118 CC denotes and
T9248 16119-16123 NN denotes flow
T9249 16134-16142 NN denotes analysis
T9250 16124-16133 NN denotes cytometry
T9251 16143-16144 -LRB- denotes (
T9252 16151-16153 NN denotes 3C
T9253 16144-16150 NN denotes Figure
T9254 16153-16154 -RRB- denotes )
T9255 16154-16155 . denotes .
T9256 16155-16264 sentence denotes Hence, in these cells, DNA replication persists despite the drastic changes in heterochromatin organization.
T9257 16156-16161 RB denotes Hence
T9258 16195-16203 VBZ denotes persists
T9259 16161-16163 , denotes ,
T9260 16163-16165 IN denotes in
T9261 16166-16171 DT denotes these
T9262 16172-16177 NNS denotes cells
T9263 16177-16179 , denotes ,
T9264 16179-16182 NN denotes DNA
T9265 16183-16194 NN denotes replication
T9266 16204-16211 IN denotes despite
T9267 16212-16215 DT denotes the
T9268 16224-16231 NNS denotes changes
T9269 16216-16223 JJ denotes drastic
T9270 16232-16234 IN denotes in
T9271 16235-16250 NN denotes heterochromatin
T9272 16251-16263 NN denotes organization
T9273 16263-16264 . denotes .
T9274 16264-16411 sentence denotes However, 24 h later, ES cells cease to proliferate and die, revealing that p150CAF-1 is required for an essential cellular process, as in embryos.
T9275 16265-16272 RB denotes However
T9276 16295-16300 VBP denotes cease
T9277 16272-16274 , denotes ,
T9278 16274-16276 CD denotes 24
T9279 16277-16278 NN denotes h
T9280 16279-16284 RB denotes later
T9281 16284-16286 , denotes ,
T9282 16286-16288 NN denotes ES
T9283 16289-16294 NNS denotes cells
T9284 16301-16303 TO denotes to
T9285 16304-16315 VB denotes proliferate
T9286 16316-16319 CC denotes and
T9287 16320-16323 VB denotes die
T9288 16323-16325 , denotes ,
T9289 16325-16334 VBG denotes revealing
T9290 16335-16339 IN denotes that
T9291 16353-16361 VBN denotes required
T9292 16340-16347 NN denotes p150CAF
T9293 16347-16348 HYPH denotes -
T9294 16348-16349 CD denotes 1
T9295 16350-16352 VBZ denotes is
T9296 16362-16365 IN denotes for
T9297 16366-16368 DT denotes an
T9298 16388-16395 NN denotes process
T9299 16369-16378 JJ denotes essential
T9300 16379-16387 JJ denotes cellular
T9301 16395-16397 , denotes ,
T9302 16397-16399 IN denotes as
T9303 16400-16402 IN denotes in
T9304 16403-16410 NNS denotes embryos
T9305 16410-16411 . denotes .
T9306 16411-16623 sentence denotes Altogether, our data demonstrate that loss of p150CAF-1 function in ES cells and early embryos alters first the organization of heterochromatin in the nucleus and, in a subsequent step, cell cycle and viability.
T9307 16412-16422 RB denotes Altogether
T9308 16433-16444 VBP denotes demonstrate
T9309 16422-16424 , denotes ,
T9310 16424-16427 PRP$ denotes our
T9311 16428-16432 NNS denotes data
T9312 16445-16449 IN denotes that
T9313 16507-16513 VBZ denotes alters
T9314 16450-16454 NN denotes loss
T9315 16455-16457 IN denotes of
T9316 16458-16465 NN denotes p150CAF
T9317 16468-16476 NN denotes function
T9318 16465-16466 HYPH denotes -
T9319 16466-16467 CD denotes 1
T9320 16477-16479 IN denotes in
T9321 16480-16482 NN denotes ES
T9322 16483-16488 NNS denotes cells
T9323 16489-16492 CC denotes and
T9324 16493-16498 JJ denotes early
T9325 16499-16506 NNS denotes embryos
T9326 16514-16519 RB denotes first
T9327 16520-16523 DT denotes the
T9328 16524-16536 NN denotes organization
T9329 16537-16539 IN denotes of
T9330 16540-16555 NN denotes heterochromatin
T9331 16556-16558 IN denotes in
T9332 16559-16562 DT denotes the
T9333 16563-16570 NN denotes nucleus
T9334 16571-16574 CC denotes and
T9335 16574-16576 , denotes ,
T9336 16576-16578 IN denotes in
T9337 16603-16608 NN denotes cycle
T9338 16579-16580 DT denotes a
T9339 16592-16596 NN denotes step
T9340 16581-16591 JJ denotes subsequent
T9341 16596-16598 , denotes ,
T9342 16598-16602 NN denotes cell
T9343 16609-16612 CC denotes and
T9344 16613-16622 NN denotes viability
T9345 16622-16623 . denotes .
T9346 16623-18193 sentence denotes Figure 3 p150CAF-1 Depletion and Loss of Heterochromatin Organization Are Compatible with Active DNA Replication in ES Cells (A) ES cells were transfected with p150CAF-1 or control siRNA vectors. After 3 d under puromycin selection, cells were pulse-labeled for 10 min with BrdU and immediately analyzed by IF. No significant difference in BrdU incorporation could be detected between control and p150CAF-1-depleted cells. The right-hand image shows the merge between the p150CAF-1 and BrdU fluorescence. Scale bar = 10 μm. (B) Immunodetection of PCNA (red) revealed no significant difference in the formation of replication foci between control and p150CAF-1-depleted ES cells. Immunodetection of p150CAF-1 is shown in green and the merging of p150CAF-1 and PCNA appears in yellow. (C) Flow cytometry analysis showed a similar cell-cycle profile for control and p150CAF-1-depleted ES cells. Results are presented as the percentage of cells in each phase of the cell cycle (G1, S, G2/M), as defined by BrdU incorporation and DNA content. Data presented are the mean of three independent experiments; error bars indicate the standard deviation. All experiments were performed 3 d after transfection of the siRNA vectors. In order to better characterize the defects in heterochromatin organization, we performed two-color DNA fluorescence in situ hybridization (FISH) experiments to reveal the spatial distribution of pericentric and centric chromosomal regions, which in mouse are mainly composed of large blocks of major and minor satellite repeats, respectively [20].
T9347 17845-17847 IN denotes In
T9348 17925-17934 VBD denotes performed
T9349 17848-17853 NN denotes order
T9350 17854-17856 TO denotes to
T9351 17864-17876 VB denotes characterize
T9352 17857-17863 RBR denotes better
T9353 17877-17880 DT denotes the
T9354 17881-17888 NNS denotes defects
T9355 17889-17891 IN denotes in
T9356 17892-17907 NN denotes heterochromatin
T9357 17908-17920 NN denotes organization
T9358 17920-17922 , denotes ,
T9359 17922-17924 PRP denotes we
T9360 17935-17938 CD denotes two
T9361 17939-17944 NN denotes color
T9362 17938-17939 HYPH denotes -
T9363 17991-18002 NNS denotes experiments
T9364 17945-17948 NN denotes DNA
T9365 17949-17961 NN denotes fluorescence
T9366 17970-17983 NN denotes hybridization
T9367 17962-17964 FW denotes in
T9368 17965-17969 FW denotes situ
T9369 17984-17985 -LRB- denotes (
T9370 17985-17989 NN denotes FISH
T9371 17989-17990 -RRB- denotes )
T9372 18003-18005 TO denotes to
T9373 18006-18012 VB denotes reveal
T9374 18013-18016 DT denotes the
T9375 18025-18037 NN denotes distribution
T9376 18017-18024 JJ denotes spatial
T9377 18038-18040 IN denotes of
T9378 18041-18052 JJ denotes pericentric
T9379 18077-18084 NNS denotes regions
T9380 18053-18056 CC denotes and
T9381 18057-18064 JJ denotes centric
T9382 18065-18076 JJ denotes chromosomal
T9383 18084-18086 , denotes ,
T9384 18086-18091 WDT denotes which
T9385 18112-18120 VBN denotes composed
T9386 18092-18094 IN denotes in
T9387 18095-18100 NN denotes mouse
T9388 18101-18104 VBP denotes are
T9389 18105-18111 RB denotes mainly
T9390 18121-18123 IN denotes of
T9391 18124-18129 JJ denotes large
T9392 18130-18136 NNS denotes blocks
T9393 18137-18139 IN denotes of
T9394 18140-18145 JJ denotes major
T9395 18166-18173 NNS denotes repeats
T9396 18146-18149 CC denotes and
T9397 18150-18155 JJ denotes minor
T9398 18156-18165 NN denotes satellite
T9399 18173-18175 , denotes ,
T9400 18175-18187 RB denotes respectively
T9401 18188-18189 -LRB- denotes [
T9402 18189-18191 CD denotes 20
T9403 18191-18192 -RRB- denotes ]
T9404 18192-18193 . denotes .
T9405 18193-18371 sentence denotes Pericentric domains from different chromosomes form clusters, which are revealed by FISH as large spots that coincide with DAPI-dense foci in the interphase nucleus (Figure 4A).
T9406 18194-18205 JJ denotes Pericentric
T9407 18206-18213 NNS denotes domains
T9408 18241-18245 VBP denotes form
T9409 18214-18218 IN denotes from
T9410 18219-18228 JJ denotes different
T9411 18229-18240 NNS denotes chromosomes
T9412 18246-18254 NNS denotes clusters
T9413 18254-18256 , denotes ,
T9414 18256-18261 WDT denotes which
T9415 18266-18274 VBN denotes revealed
T9416 18262-18265 VBP denotes are
T9417 18275-18277 IN denotes by
T9418 18278-18282 NN denotes FISH
T9419 18283-18285 IN denotes as
T9420 18286-18291 JJ denotes large
T9421 18292-18297 NNS denotes spots
T9422 18298-18302 WDT denotes that
T9423 18303-18311 VBP denotes coincide
T9424 18312-18316 IN denotes with
T9425 18317-18321 NN denotes DAPI
T9426 18322-18327 JJ denotes dense
T9427 18321-18322 HYPH denotes -
T9428 18328-18332 NNS denotes foci
T9429 18333-18335 IN denotes in
T9430 18336-18339 DT denotes the
T9431 18351-18358 NN denotes nucleus
T9432 18340-18350 NN denotes interphase
T9433 18359-18360 -LRB- denotes (
T9434 18367-18369 NN denotes 4A
T9435 18360-18366 NN denotes Figure
T9436 18369-18370 -RRB- denotes )
T9437 18370-18371 . denotes .
T9438 18371-18470 sentence denotes At the periphery of each pericentric domain, centric regions form individual entities (Figure 4A).
T9439 18372-18374 IN denotes At
T9440 18433-18437 VBP denotes form
T9441 18375-18378 DT denotes the
T9442 18379-18388 NN denotes periphery
T9443 18389-18391 IN denotes of
T9444 18392-18396 DT denotes each
T9445 18409-18415 NN denotes domain
T9446 18397-18408 JJ denotes pericentric
T9447 18415-18417 , denotes ,
T9448 18417-18424 JJ denotes centric
T9449 18425-18432 NNS denotes regions
T9450 18438-18448 JJ denotes individual
T9451 18449-18457 NNS denotes entities
T9452 18458-18459 -LRB- denotes (
T9453 18466-18468 NN denotes 4A
T9454 18459-18465 NN denotes Figure
T9455 18468-18469 -RRB- denotes )
T9456 18469-18470 . denotes .
T9457 18470-18639 sentence denotes In p150CAF-1 RNAi-depleted cells, we observed a disruption of pericentric heterochromatin clusters that coincides with the disappearance of DAPI-dense foci (Figure 4B).
T9458 18471-18473 IN denotes In
T9459 18508-18516 VBD denotes observed
T9460 18474-18481 NN denotes p150CAF
T9461 18498-18503 NNS denotes cells
T9462 18481-18482 HYPH denotes -
T9463 18482-18483 CD denotes 1
T9464 18484-18488 NN denotes RNAi
T9465 18489-18497 VBN denotes depleted
T9466 18488-18489 HYPH denotes -
T9467 18503-18505 , denotes ,
T9468 18505-18507 PRP denotes we
T9469 18517-18518 DT denotes a
T9470 18519-18529 NN denotes disruption
T9471 18530-18532 IN denotes of
T9472 18533-18544 JJ denotes pericentric
T9473 18561-18569 NNS denotes clusters
T9474 18545-18560 NN denotes heterochromatin
T9475 18570-18574 WDT denotes that
T9476 18575-18584 VBZ denotes coincides
T9477 18585-18589 IN denotes with
T9478 18590-18593 DT denotes the
T9479 18594-18607 NN denotes disappearance
T9480 18608-18610 IN denotes of
T9481 18611-18615 NN denotes DAPI
T9482 18616-18621 JJ denotes dense
T9483 18615-18616 HYPH denotes -
T9484 18622-18626 NNS denotes foci
T9485 18627-18628 -LRB- denotes (
T9486 18635-18637 NN denotes 4B
T9487 18628-18634 NN denotes Figure
T9488 18637-18638 -RRB- denotes )
T9489 18638-18639 . denotes .
T9490 18639-18827 sentence denotes Individual pericentric domains from single chromosomes are now found either isolated or aggregated in a pattern less dense than the regular clusters observed in control cells (Figure 4B).
T9491 18640-18650 JJ denotes Individual
T9492 18663-18670 NNS denotes domains
T9493 18651-18662 JJ denotes pericentric
T9494 18703-18708 VBN denotes found
T9495 18671-18675 IN denotes from
T9496 18676-18682 JJ denotes single
T9497 18683-18694 NNS denotes chromosomes
T9498 18695-18698 VBP denotes are
T9499 18699-18702 RB denotes now
T9500 18709-18715 CC denotes either
T9501 18716-18724 JJ denotes isolated
T9502 18725-18727 CC denotes or
T9503 18728-18738 JJ denotes aggregated
T9504 18739-18741 IN denotes in
T9505 18742-18743 DT denotes a
T9506 18744-18751 NN denotes pattern
T9507 18752-18756 RBR denotes less
T9508 18757-18762 JJ denotes dense
T9509 18763-18767 IN denotes than
T9510 18768-18771 DT denotes the
T9511 18780-18788 NNS denotes clusters
T9512 18772-18779 JJ denotes regular
T9513 18789-18797 VBN denotes observed
T9514 18798-18800 IN denotes in
T9515 18801-18808 NN denotes control
T9516 18809-18814 NNS denotes cells
T9517 18815-18816 -LRB- denotes (
T9518 18823-18825 NN denotes 4B
T9519 18816-18822 NN denotes Figure
T9520 18825-18826 -RRB- denotes )
T9521 18826-18827 . denotes .
T9522 18827-18981 sentence denotes Such aggregates, which are often found at the nuclear periphery, are also revealed by DAPI staining as a typical signature of p150CAF-1 loss-of-function.
T9523 18828-18832 JJ denotes Such
T9524 18833-18843 NNS denotes aggregates
T9525 18902-18910 VBN denotes revealed
T9526 18843-18845 , denotes ,
T9527 18845-18850 WDT denotes which
T9528 18861-18866 VBN denotes found
T9529 18851-18854 VBP denotes are
T9530 18855-18860 RB denotes often
T9531 18867-18869 IN denotes at
T9532 18870-18873 DT denotes the
T9533 18882-18891 NN denotes periphery
T9534 18874-18881 JJ denotes nuclear
T9535 18891-18893 , denotes ,
T9536 18893-18896 VBP denotes are
T9537 18897-18901 RB denotes also
T9538 18911-18913 IN denotes by
T9539 18914-18918 NN denotes DAPI
T9540 18919-18927 NN denotes staining
T9541 18928-18930 IN denotes as
T9542 18931-18932 DT denotes a
T9543 18941-18950 NN denotes signature
T9544 18933-18940 JJ denotes typical
T9545 18951-18953 IN denotes of
T9546 18954-18961 NN denotes p150CAF
T9547 18961-18962 HYPH denotes -
T9548 18962-18963 CD denotes 1
T9549 18964-18968 NN denotes loss
T9550 18968-18969 HYPH denotes -
T9551 18969-18971 IN denotes of
T9552 18971-18972 HYPH denotes -
T9553 18972-18980 NN denotes function
T9554 18980-18981 . denotes .
T9555 18981-19288 sentence denotes Quantification of fluorescence along a line randomly drawn across the nucleus revealed lower fluorescence intensity and a broader distribution of DAPI and major satellite hybridization signals in p150CAF-1-depleted cells (Figure 4C and 4D), indicating decondensation of pericentric heterochromatin domains.
T9556 18982-18996 NN denotes Quantification
T9557 19060-19068 VBD denotes revealed
T9558 18997-18999 IN denotes of
T9559 19000-19012 NN denotes fluorescence
T9560 19013-19018 IN denotes along
T9561 19019-19020 DT denotes a
T9562 19021-19025 NN denotes line
T9563 19026-19034 RB denotes randomly
T9564 19035-19040 VBN denotes drawn
T9565 19041-19047 IN denotes across
T9566 19048-19051 DT denotes the
T9567 19052-19059 NN denotes nucleus
T9568 19069-19074 JJR denotes lower
T9569 19088-19097 NN denotes intensity
T9570 19075-19087 NN denotes fluorescence
T9571 19098-19101 CC denotes and
T9572 19102-19103 DT denotes a
T9573 19112-19124 NN denotes distribution
T9574 19104-19111 JJR denotes broader
T9575 19125-19127 IN denotes of
T9576 19128-19132 NN denotes DAPI
T9577 19133-19136 CC denotes and
T9578 19137-19142 JJ denotes major
T9579 19167-19174 NNS denotes signals
T9580 19143-19152 NN denotes satellite
T9581 19153-19166 NN denotes hybridization
T9582 19175-19177 IN denotes in
T9583 19178-19185 NN denotes p150CAF
T9584 19188-19196 VBN denotes depleted
T9585 19185-19186 HYPH denotes -
T9586 19186-19187 CD denotes 1
T9587 19187-19188 HYPH denotes -
T9588 19197-19202 NNS denotes cells
T9589 19203-19204 -LRB- denotes (
T9590 19211-19213 NN denotes 4C
T9591 19204-19210 NN denotes Figure
T9592 19214-19217 CC denotes and
T9593 19218-19220 NN denotes 4D
T9594 19220-19221 -RRB- denotes )
T9595 19221-19223 , denotes ,
T9596 19223-19233 VBG denotes indicating
T9597 19234-19248 NN denotes decondensation
T9598 19249-19251 IN denotes of
T9599 19252-19263 JJ denotes pericentric
T9600 19280-19287 NNS denotes domains
T9601 19264-19279 NN denotes heterochromatin
T9602 19287-19288 . denotes .
T9603 19288-19455 sentence denotes In contrast, centric domains showed an intensity and shape similar to control cells, suggesting that they remain unaffected by p150CAF-1 depletion (Figure 4C and 4D).
T9604 19289-19291 IN denotes In
T9605 19318-19324 VBD denotes showed
T9606 19292-19300 NN denotes contrast
T9607 19300-19302 , denotes ,
T9608 19302-19309 JJ denotes centric
T9609 19310-19317 NNS denotes domains
T9610 19325-19327 DT denotes an
T9611 19328-19337 NN denotes intensity
T9612 19338-19341 CC denotes and
T9613 19342-19347 NN denotes shape
T9614 19348-19355 JJ denotes similar
T9615 19356-19358 IN denotes to
T9616 19359-19366 NN denotes control
T9617 19367-19372 NNS denotes cells
T9618 19372-19374 , denotes ,
T9619 19374-19384 VBG denotes suggesting
T9620 19385-19389 IN denotes that
T9621 19395-19401 VBP denotes remain
T9622 19390-19394 PRP denotes they
T9623 19402-19412 JJ denotes unaffected
T9624 19413-19415 IN denotes by
T9625 19416-19423 NN denotes p150CAF
T9626 19426-19435 NN denotes depletion
T9627 19423-19424 HYPH denotes -
T9628 19424-19425 CD denotes 1
T9629 19436-19437 -LRB- denotes (
T9630 19444-19446 NN denotes 4C
T9631 19437-19443 NN denotes Figure
T9632 19447-19450 CC denotes and
T9633 19451-19453 NN denotes 4D
T9634 19453-19454 -RRB- denotes )
T9635 19454-19455 . denotes .
T9636 19455-19599 sentence denotes In conclusion, these results show that p150CAF-1 is required for the proper condensation and clustering of pericentric heterochromatin domains.
T9637 19456-19458 IN denotes In
T9638 19485-19489 VBP denotes show
T9639 19459-19469 NN denotes conclusion
T9640 19469-19471 , denotes ,
T9641 19471-19476 DT denotes these
T9642 19477-19484 NNS denotes results
T9643 19490-19494 IN denotes that
T9644 19508-19516 VBN denotes required
T9645 19495-19502 NN denotes p150CAF
T9646 19502-19503 HYPH denotes -
T9647 19503-19504 CD denotes 1
T9648 19505-19507 VBZ denotes is
T9649 19517-19520 IN denotes for
T9650 19521-19524 DT denotes the
T9651 19532-19544 NN denotes condensation
T9652 19525-19531 JJ denotes proper
T9653 19545-19548 CC denotes and
T9654 19549-19559 NN denotes clustering
T9655 19560-19562 IN denotes of
T9656 19563-19574 JJ denotes pericentric
T9657 19591-19598 NNS denotes domains
T9658 19575-19590 NN denotes heterochromatin
T9659 19598-19599 . denotes .
T9660 19599-21554 sentence denotes Figure 4 Depletion of p150CAF-1 Leads to Loss of Clustering, Altered Localization, and Decondensation of Pericentric Heterochromatin Domains Distribution of pericentric (red) and centric (green) domains was analyzed in the interphase nuclei of mouse ES cells by DNA FISH, using major satellite (pSAT) [47] and minor satellite (pMR150) [48] DNA probes, respectively. (A) In ES cells expressing control (cont) siRNA, pericentric regions from several chromosomes associate in clusters (red). These chromocenters form foci as revealed by DAPI staining (left-hand image), while centric regions (green) remain independent entities at the periphery of these domains. The right-hand image shows the merge between the pericentric and centric FISH signals. (B) The organization of pericentric domains was altered in cells expressing p150CAF-1 siRNA. Instead of forming well-defined chromocenters, pericentric domains were found either isolated or associated in heterogeneous aggregates of various sizes, often at the nuclear periphery. Scale bar = 10 μm. (C) Control ES cells. Fluorescence was quantified along a line randomly drawn across the nucleus in the merged image and data were plotted. One can distinguish clear peaks corresponding to chromocenters (red) and the condensed minor satellites (green). (D) ES cells expressing p150CAF-1 siRNA. p150CAF-1 depletion led to a lower fluorescence intensity and a broader distribution of signals corresponding to DAPI (blue) and major satellite hybridization (red, plot) while the organization of the minor satellites remained unaffected. Insets in the right-hand images show a typical chromocenter in control cells (C) and a disrupted chromocenter in p150CAF-1-depleted cells (D). Given the known role of CAF-1 in the deposition of histone H3.1 and H4 associated with DNA synthesis [11,12], we wondered whether this defect in higher-order chromatin organization could reflect an aberrant nucleosomal organization.
T9661 21322-21327 VBN denotes Given
T9662 21435-21443 VBD denotes wondered
T9663 21328-21331 DT denotes the
T9664 21338-21342 NN denotes role
T9665 21332-21337 VBN denotes known
T9666 21343-21345 IN denotes of
T9667 21346-21349 NN denotes CAF
T9668 21349-21350 HYPH denotes -
T9669 21350-21351 CD denotes 1
T9670 21352-21354 IN denotes in
T9671 21355-21358 DT denotes the
T9672 21359-21369 NN denotes deposition
T9673 21370-21372 IN denotes of
T9674 21373-21380 NN denotes histone
T9675 21381-21385 NN denotes H3.1
T9676 21386-21389 CC denotes and
T9677 21390-21392 NN denotes H4
T9678 21393-21403 VBN denotes associated
T9679 21404-21408 IN denotes with
T9680 21409-21412 NN denotes DNA
T9681 21413-21422 NN denotes synthesis
T9682 21423-21424 -LRB- denotes [
T9683 21427-21429 CD denotes 12
T9684 21424-21426 CD denotes 11
T9685 21426-21427 , denotes ,
T9686 21429-21430 -RRB- denotes ]
T9687 21430-21432 , denotes ,
T9688 21432-21434 PRP denotes we
T9689 21444-21451 IN denotes whether
T9690 21509-21516 VB denotes reflect
T9691 21452-21456 DT denotes this
T9692 21457-21463 NN denotes defect
T9693 21464-21466 IN denotes in
T9694 21467-21473 JJR denotes higher
T9695 21474-21479 NN denotes order
T9696 21473-21474 HYPH denotes -
T9697 21490-21502 NN denotes organization
T9698 21480-21489 NN denotes chromatin
T9699 21503-21508 MD denotes could
T9700 21517-21519 DT denotes an
T9701 21541-21553 NN denotes organization
T9702 21520-21528 JJ denotes aberrant
T9703 21529-21540 JJ denotes nucleosomal
T9704 21553-21554 . denotes .
T9705 21554-21781 sentence denotes Using DNase I and micrococcal nuclease (MNase) assays, we could not observe any significant difference between control and p150CAF-1-depleted ES cells at the level of bulk genome chromatin or at pericentric repeats (Figure 5).
T9706 21555-21560 VBG denotes Using
T9707 21623-21630 VB denotes observe
T9708 21561-21566 NN denotes DNase
T9709 21567-21568 CD denotes I
T9710 21569-21572 CC denotes and
T9711 21573-21584 JJ denotes micrococcal
T9712 21585-21593 NN denotes nuclease
T9713 21602-21608 NNS denotes assays
T9714 21594-21595 -LRB- denotes (
T9715 21595-21600 NN denotes MNase
T9716 21600-21601 -RRB- denotes )
T9717 21608-21610 , denotes ,
T9718 21610-21612 PRP denotes we
T9719 21613-21618 MD denotes could
T9720 21619-21622 RB denotes not
T9721 21631-21634 DT denotes any
T9722 21647-21657 NN denotes difference
T9723 21635-21646 JJ denotes significant
T9724 21658-21665 IN denotes between
T9725 21666-21673 NN denotes control
T9726 21700-21705 NNS denotes cells
T9727 21674-21677 CC denotes and
T9728 21678-21685 NN denotes p150CAF
T9729 21688-21696 VBN denotes depleted
T9730 21685-21686 HYPH denotes -
T9731 21686-21687 CD denotes 1
T9732 21687-21688 HYPH denotes -
T9733 21697-21699 NN denotes ES
T9734 21706-21708 IN denotes at
T9735 21709-21712 DT denotes the
T9736 21713-21718 NN denotes level
T9737 21719-21721 IN denotes of
T9738 21722-21726 NN denotes bulk
T9739 21734-21743 NN denotes chromatin
T9740 21727-21733 NN denotes genome
T9741 21744-21746 CC denotes or
T9742 21747-21749 IN denotes at
T9743 21750-21761 JJ denotes pericentric
T9744 21762-21769 NNS denotes repeats
T9745 21770-21771 -LRB- denotes (
T9746 21771-21777 NN denotes Figure
T9747 21778-21779 CD denotes 5
T9748 21779-21780 -RRB- denotes )
T9749 21780-21781 . denotes .
T9750 21781-21964 sentence denotes In a second series of experiments, we compared the association of histone H3 with chromatin in nuclei isolated from cells transfected with control and p150CAF-1 RNAi plasmid vectors.
T9751 21782-21784 IN denotes In
T9752 21820-21828 VBD denotes compared
T9753 21785-21786 DT denotes a
T9754 21794-21800 NN denotes series
T9755 21787-21793 JJ denotes second
T9756 21801-21803 IN denotes of
T9757 21804-21815 NNS denotes experiments
T9758 21815-21817 , denotes ,
T9759 21817-21819 PRP denotes we
T9760 21829-21832 DT denotes the
T9761 21833-21844 NN denotes association
T9762 21845-21847 IN denotes of
T9763 21848-21855 NN denotes histone
T9764 21856-21858 NN denotes H3
T9765 21859-21863 IN denotes with
T9766 21864-21873 NN denotes chromatin
T9767 21874-21876 IN denotes in
T9768 21877-21883 NNS denotes nuclei
T9769 21884-21892 VBN denotes isolated
T9770 21893-21897 IN denotes from
T9771 21898-21903 NNS denotes cells
T9772 21904-21915 VBN denotes transfected
T9773 21916-21920 IN denotes with
T9774 21921-21928 NN denotes control
T9775 21956-21963 NNS denotes vectors
T9776 21929-21932 CC denotes and
T9777 21933-21940 NN denotes p150CAF
T9778 21940-21941 HYPH denotes -
T9779 21941-21942 CD denotes 1
T9780 21943-21947 NN denotes RNAi
T9781 21948-21955 NN denotes plasmid
T9782 21963-21964 . denotes .
T9783 21964-22070 sentence denotes Nuclei were incubated in buffers with different salt concentrations ranging from 100 mM NaCl to 1 M NaCl.
T9784 21965-21971 NNS denotes Nuclei
T9785 21977-21986 VBN denotes incubated
T9786 21972-21976 VBD denotes were
T9787 21987-21989 IN denotes in
T9788 21990-21997 NNS denotes buffers
T9789 21998-22002 IN denotes with
T9790 22003-22012 JJ denotes different
T9791 22018-22032 NNS denotes concentrations
T9792 22013-22017 NN denotes salt
T9793 22033-22040 VBG denotes ranging
T9794 22041-22045 IN denotes from
T9795 22046-22049 CD denotes 100
T9796 22050-22052 NN denotes mM
T9797 22053-22057 NN denotes NaCl
T9798 22058-22060 IN denotes to
T9799 22061-22062 CD denotes 1
T9800 22063-22064 NN denotes M
T9801 22065-22069 NN denotes NaCl
T9802 22069-22070 . denotes .
T9803 22070-22235 sentence denotes In all conditions, the amount of histone H3 remaining associated with chromatin was indistinguishable in control and p150CAF-1-depleted ES cells (unpublished data).
T9804 22071-22073 IN denotes In
T9805 22151-22154 VBD denotes was
T9806 22074-22077 DT denotes all
T9807 22078-22088 NNS denotes conditions
T9808 22088-22090 , denotes ,
T9809 22090-22093 DT denotes the
T9810 22094-22100 NN denotes amount
T9811 22101-22103 IN denotes of
T9812 22104-22111 NN denotes histone
T9813 22112-22114 NN denotes H3
T9814 22115-22124 VBG denotes remaining
T9815 22125-22135 VBN denotes associated
T9816 22136-22140 IN denotes with
T9817 22141-22150 NN denotes chromatin
T9818 22155-22172 JJ denotes indistinguishable
T9819 22173-22175 IN denotes in
T9820 22176-22183 NN denotes control
T9821 22210-22215 NNS denotes cells
T9822 22184-22187 CC denotes and
T9823 22188-22195 NN denotes p150CAF
T9824 22198-22206 VBN denotes depleted
T9825 22195-22196 HYPH denotes -
T9826 22196-22197 CD denotes 1
T9827 22197-22198 HYPH denotes -
T9828 22207-22209 NN denotes ES
T9829 22216-22217 -LRB- denotes (
T9830 22229-22233 NNS denotes data
T9831 22217-22228 JJ denotes unpublished
T9832 22233-22234 -RRB- denotes )
T9833 22234-22235 . denotes .
T9834 22235-22401 sentence denotes Therefore, the loss of clustering and decondensation of pericentric heterochromatin are unlikely to be the consequence of severe defects in nucleosomal organization.
T9835 22236-22245 RB denotes Therefore
T9836 22320-22323 VBP denotes are
T9837 22245-22247 , denotes ,
T9838 22247-22250 DT denotes the
T9839 22251-22255 NN denotes loss
T9840 22256-22258 IN denotes of
T9841 22259-22269 NN denotes clustering
T9842 22270-22273 CC denotes and
T9843 22274-22288 NN denotes decondensation
T9844 22289-22291 IN denotes of
T9845 22292-22303 JJ denotes pericentric
T9846 22304-22319 NN denotes heterochromatin
T9847 22324-22332 JJ denotes unlikely
T9848 22333-22335 TO denotes to
T9849 22336-22338 VB denotes be
T9850 22339-22342 DT denotes the
T9851 22343-22354 NN denotes consequence
T9852 22355-22357 IN denotes of
T9853 22358-22364 JJ denotes severe
T9854 22365-22372 NNS denotes defects
T9855 22373-22375 IN denotes in
T9856 22376-22387 JJ denotes nucleosomal
T9857 22388-22400 NN denotes organization
T9858 22400-22401 . denotes .
T9859 22401-23073 sentence denotes Figure 5 Nucleosomal Organization Is Not Altered in p150CAF-1-Depleted ES Cells Nuclei were prepared from ES cells transfected with control or p150CAF-1 siRNA vector. Nuclei were digested with increasing amounts of DNase I or MNase. (A) After digestion with the indicated nucleases, total DNA was prepared and run onto an agarose gel which was stained with ethidium bromide to reveal bulk genomic DNA. (B) The DNA was blotted onto a nylon membrane, which was then hybridized with the α-32P-labeled pSAT major satellite repeat probe [47]. Our findings showed that the nuclear localization of HP1α is severely altered in Chaf1a −/− embryos and p150CAF-1-depleted ES cells.
T9860 22941-22944 PRP$ denotes Our
T9861 22945-22953 NNS denotes findings
T9862 22954-22960 VBD denotes showed
T9863 22961-22965 IN denotes that
T9864 23011-23018 VBN denotes altered
T9865 22966-22969 DT denotes the
T9866 22978-22990 NN denotes localization
T9867 22970-22977 JJ denotes nuclear
T9868 22991-22993 IN denotes of
T9869 22994-22998 NN denotes HP1α
T9870 22999-23001 VBZ denotes is
T9871 23002-23010 RB denotes severely
T9872 23019-23021 IN denotes in
T9873 23022-23028 NN denotes Chaf1a
T9874 23033-23040 NNS denotes embryos
T9875 23029-23030 SYM denotes
T9876 23030-23031 HYPH denotes /
T9877 23031-23032 SYM denotes
T9878 23041-23044 CC denotes and
T9879 23045-23052 NN denotes p150CAF
T9880 23055-23063 VBN denotes depleted
T9881 23052-23053 HYPH denotes -
T9882 23053-23054 CD denotes 1
T9883 23054-23055 HYPH denotes -
T9884 23067-23072 NNS denotes cells
T9885 23064-23066 NN denotes ES
T9886 23072-23073 . denotes .
T9887 23073-23194 sentence denotes We therefore examined the status of other epigenetic marks previously shown to characterize pericentric heterochromatin.
T9888 23074-23076 PRP denotes We
T9889 23087-23095 VBD denotes examined
T9890 23077-23086 RB denotes therefore
T9891 23096-23099 DT denotes the
T9892 23100-23106 NN denotes status
T9893 23107-23109 IN denotes of
T9894 23110-23115 JJ denotes other
T9895 23127-23132 NNS denotes marks
T9896 23116-23126 JJ denotes epigenetic
T9897 23133-23143 RB denotes previously
T9898 23144-23149 VBN denotes shown
T9899 23150-23152 TO denotes to
T9900 23153-23165 VB denotes characterize
T9901 23166-23177 JJ denotes pericentric
T9902 23178-23193 NN denotes heterochromatin
T9903 23193-23194 . denotes .
T9904 23194-23355 sentence denotes We first tested DNA CpG methylation [25] at major satellite repeats and found no significant difference between control and p150CAF-1-depleted cells (Figure 6).
T9905 23195-23197 PRP denotes We
T9906 23204-23210 VBD denotes tested
T9907 23198-23203 RB denotes first
T9908 23211-23214 NN denotes DNA
T9909 23219-23230 NN denotes methylation
T9910 23215-23218 NN denotes CpG
T9911 23231-23232 -LRB- denotes [
T9912 23232-23234 CD denotes 25
T9913 23234-23235 -RRB- denotes ]
T9914 23236-23238 IN denotes at
T9915 23239-23244 JJ denotes major
T9916 23255-23262 NNS denotes repeats
T9917 23245-23254 NN denotes satellite
T9918 23263-23266 CC denotes and
T9919 23267-23272 VBD denotes found
T9920 23273-23275 DT denotes no
T9921 23288-23298 NN denotes difference
T9922 23276-23287 JJ denotes significant
T9923 23299-23306 IN denotes between
T9924 23307-23314 NN denotes control
T9925 23338-23343 NNS denotes cells
T9926 23315-23318 CC denotes and
T9927 23319-23326 NN denotes p150CAF
T9928 23329-23337 VBN denotes depleted
T9929 23326-23327 HYPH denotes -
T9930 23327-23328 CD denotes 1
T9931 23328-23329 HYPH denotes -
T9932 23344-23345 -LRB- denotes (
T9933 23345-23351 NN denotes Figure
T9934 23352-23353 CD denotes 6
T9935 23353-23354 -RRB- denotes )
T9936 23354-23355 . denotes .
T9937 23355-23502 sentence denotes As the LTM7 ES cell line that we used in our RNAi experiments is a female (XX) cell line, DNA methylation is globally reduced in these cells [26].
T9938 23356-23358 IN denotes As
T9939 23418-23420 VBZ denotes is
T9940 23359-23362 DT denotes the
T9941 23376-23380 NN denotes line
T9942 23363-23367 NN denotes LTM7
T9943 23368-23370 NN denotes ES
T9944 23371-23375 NN denotes cell
T9945 23381-23385 WDT denotes that
T9946 23389-23393 VBD denotes used
T9947 23386-23388 PRP denotes we
T9948 23394-23396 IN denotes in
T9949 23397-23400 PRP$ denotes our
T9950 23406-23417 NNS denotes experiments
T9951 23401-23405 NN denotes RNAi
T9952 23474-23481 VBN denotes reduced
T9953 23421-23422 DT denotes a
T9954 23440-23444 NN denotes line
T9955 23423-23429 JJ denotes female
T9956 23430-23431 -LRB- denotes (
T9957 23431-23433 NN denotes XX
T9958 23433-23434 -RRB- denotes )
T9959 23435-23439 NN denotes cell
T9960 23444-23446 , denotes ,
T9961 23446-23449 NN denotes DNA
T9962 23450-23461 NN denotes methylation
T9963 23462-23464 VBZ denotes is
T9964 23465-23473 RB denotes globally
T9965 23482-23484 IN denotes in
T9966 23485-23490 DT denotes these
T9967 23491-23496 NNS denotes cells
T9968 23497-23498 -LRB- denotes [
T9969 23498-23500 CD denotes 26
T9970 23500-23501 -RRB- denotes ]
T9971 23501-23502 . denotes .
T9972 23502-23908 sentence denotes To rule out the possibility that hypomethylation of pericentric repeats might contribute to the destabilization of heterochromatin domains in p150CAF-1-depleted ES cells, we tested our RNAi plasmid vector in a XY ES cell line, and confirmed that loss of p150CAF-1 leads to disruption of heterochromatin organization independently of the degree of DNA methylation at pericentric repeats (unpublished data).
T9973 23503-23505 TO denotes To
T9974 23506-23510 VB denotes rule
T9975 23677-23683 VBD denotes tested
T9976 23511-23514 RP denotes out
T9977 23515-23518 DT denotes the
T9978 23519-23530 NN denotes possibility
T9979 23531-23535 IN denotes that
T9980 23581-23591 VB denotes contribute
T9981 23536-23551 NN denotes hypomethylation
T9982 23552-23554 IN denotes of
T9983 23555-23566 JJ denotes pericentric
T9984 23567-23574 NNS denotes repeats
T9985 23575-23580 MD denotes might
T9986 23592-23594 IN denotes to
T9987 23595-23598 DT denotes the
T9988 23599-23614 NN denotes destabilization
T9989 23615-23617 IN denotes of
T9990 23618-23633 NN denotes heterochromatin
T9991 23634-23641 NNS denotes domains
T9992 23642-23644 IN denotes in
T9993 23645-23652 NN denotes p150CAF
T9994 23655-23663 VBN denotes depleted
T9995 23652-23653 HYPH denotes -
T9996 23653-23654 CD denotes 1
T9997 23654-23655 HYPH denotes -
T9998 23667-23672 NNS denotes cells
T9999 23664-23666 NN denotes ES
T10000 23672-23674 , denotes ,
T10001 23674-23676 PRP denotes we
T10002 23684-23687 PRP$ denotes our
T10003 23701-23707 NN denotes vector
T10004 23688-23692 NN denotes RNAi
T10005 23693-23700 NN denotes plasmid
T10006 23708-23710 IN denotes in
T10007 23711-23712 DT denotes a
T10008 23724-23728 NN denotes line
T10009 23713-23715 NN denotes XY
T10010 23716-23718 NN denotes ES
T10011 23719-23723 NN denotes cell
T10012 23728-23730 , denotes ,
T10013 23730-23733 CC denotes and
T10014 23734-23743 VBD denotes confirmed
T10015 23744-23748 IN denotes that
T10016 23767-23772 VBZ denotes leads
T10017 23749-23753 NN denotes loss
T10018 23754-23756 IN denotes of
T10019 23757-23764 NN denotes p150CAF
T10020 23764-23765 HYPH denotes -
T10021 23765-23766 CD denotes 1
T10022 23773-23775 IN denotes to
T10023 23776-23786 NN denotes disruption
T10024 23787-23789 IN denotes of
T10025 23790-23805 NN denotes heterochromatin
T10026 23806-23818 NN denotes organization
T10027 23819-23832 RB denotes independently
T10028 23833-23835 IN denotes of
T10029 23836-23839 DT denotes the
T10030 23840-23846 NN denotes degree
T10031 23847-23849 IN denotes of
T10032 23850-23853 NN denotes DNA
T10033 23854-23865 NN denotes methylation
T10034 23866-23868 IN denotes at
T10035 23869-23880 JJ denotes pericentric
T10036 23881-23888 NNS denotes repeats
T10037 23889-23890 -LRB- denotes (
T10038 23902-23906 NNS denotes data
T10039 23890-23901 JJ denotes unpublished
T10040 23906-23907 -RRB- denotes )
T10041 23907-23908 . denotes .
T10042 23908-24042 sentence denotes We next analyzed specific histone modifications [27] in chromatin immunoprecipitation (ChIP) experiments using native chromatin [28].
T10043 23909-23911 PRP denotes We
T10044 23917-23925 VBD denotes analyzed
T10045 23912-23916 RB denotes next
T10046 23926-23934 JJ denotes specific
T10047 23943-23956 NNS denotes modifications
T10048 23935-23942 NN denotes histone
T10049 23957-23958 -LRB- denotes [
T10050 23958-23960 CD denotes 27
T10051 23960-23961 -RRB- denotes ]
T10052 23962-23964 IN denotes in
T10053 23965-23974 NN denotes chromatin
T10054 23975-23994 NN denotes immunoprecipitation
T10055 24002-24013 NNS denotes experiments
T10056 23995-23996 -LRB- denotes (
T10057 23996-24000 NN denotes ChIP
T10058 24000-24001 -RRB- denotes )
T10059 24014-24019 VBG denotes using
T10060 24020-24026 JJ denotes native
T10061 24027-24036 NN denotes chromatin
T10062 24037-24038 -LRB- denotes [
T10063 24038-24040 CD denotes 28
T10064 24040-24041 -RRB- denotes ]
T10065 24041-24042 . denotes .
T10066 24042-24209 sentence denotes We found that pericentric DNA was immunoprecipitated with a 2-fold lower efficiency with H4K20me3 [29,30] antibodies following p150CAF-1 depletion (Figure 7A and 7B).
T10067 24043-24045 PRP denotes We
T10068 24046-24051 VBD denotes found
T10069 24052-24056 IN denotes that
T10070 24077-24095 VBN denotes immunoprecipitated
T10071 24057-24068 JJ denotes pericentric
T10072 24069-24072 NN denotes DNA
T10073 24073-24076 VBD denotes was
T10074 24096-24100 IN denotes with
T10075 24101-24102 DT denotes a
T10076 24116-24126 NN denotes efficiency
T10077 24103-24104 CD denotes 2
T10078 24110-24115 JJR denotes lower
T10079 24104-24105 HYPH denotes -
T10080 24105-24109 RB denotes fold
T10081 24127-24131 IN denotes with
T10082 24132-24140 NN denotes H4K20me3
T10083 24149-24159 NNS denotes antibodies
T10084 24141-24142 -LRB- denotes [
T10085 24145-24147 CD denotes 30
T10086 24142-24144 CD denotes 29
T10087 24144-24145 , denotes ,
T10088 24147-24148 -RRB- denotes ]
T10089 24160-24169 VBG denotes following
T10090 24170-24177 NN denotes p150CAF
T10091 24180-24189 NN denotes depletion
T10092 24177-24178 HYPH denotes -
T10093 24178-24179 CD denotes 1
T10094 24190-24191 -LRB- denotes (
T10095 24198-24200 NN denotes 7A
T10096 24191-24197 NN denotes Figure
T10097 24201-24204 CC denotes and
T10098 24205-24207 NN denotes 7B
T10099 24207-24208 -RRB- denotes )
T10100 24208-24209 . denotes .
T10101 24209-24406 sentence denotes Immunoprecipitation of minor satellite repeats in the same experiment was less affected (Figure 7B), showing that loss of p150CAF-1 function mainly affects H4K20me3 at pericentric heterochromatin.
T10102 24210-24229 NN denotes Immunoprecipitation
T10103 24289-24297 VBN denotes affected
T10104 24230-24232 IN denotes of
T10105 24233-24238 JJ denotes minor
T10106 24249-24256 NNS denotes repeats
T10107 24239-24248 NN denotes satellite
T10108 24257-24259 IN denotes in
T10109 24260-24263 DT denotes the
T10110 24269-24279 NN denotes experiment
T10111 24264-24268 JJ denotes same
T10112 24280-24283 VBD denotes was
T10113 24284-24288 RBR denotes less
T10114 24298-24299 -LRB- denotes (
T10115 24306-24308 NN denotes 7B
T10116 24299-24305 NN denotes Figure
T10117 24308-24309 -RRB- denotes )
T10118 24309-24311 , denotes ,
T10119 24311-24318 VBG denotes showing
T10120 24319-24323 IN denotes that
T10121 24358-24365 VBZ denotes affects
T10122 24324-24328 NN denotes loss
T10123 24329-24331 IN denotes of
T10124 24332-24339 NN denotes p150CAF
T10125 24342-24350 NN denotes function
T10126 24339-24340 HYPH denotes -
T10127 24340-24341 CD denotes 1
T10128 24351-24357 RB denotes mainly
T10129 24366-24374 NN denotes H4K20me3
T10130 24375-24377 IN denotes at
T10131 24378-24389 JJ denotes pericentric
T10132 24390-24405 NN denotes heterochromatin
T10133 24405-24406 . denotes .
T10134 24406-24625 sentence denotes Moreover, no significant difference in immunoprecipitation efficiency was detected at intracisternal A particle (IAP) elements (Figure 7B), which are noncentromeric repeated DNA elements also enriched in H4K20me3 [31].
T10135 24407-24415 RB denotes Moreover
T10136 24481-24489 VBN denotes detected
T10137 24415-24417 , denotes ,
T10138 24417-24419 DT denotes no
T10139 24432-24442 NN denotes difference
T10140 24420-24431 JJ denotes significant
T10141 24443-24445 IN denotes in
T10142 24446-24465 NN denotes immunoprecipitation
T10143 24466-24476 NN denotes efficiency
T10144 24477-24480 VBD denotes was
T10145 24490-24492 IN denotes at
T10146 24493-24507 JJ denotes intracisternal
T10147 24510-24518 NN denotes particle
T10148 24508-24509 NN denotes A
T10149 24525-24533 NNS denotes elements
T10150 24519-24520 -LRB- denotes (
T10151 24520-24523 NN denotes IAP
T10152 24523-24524 -RRB- denotes )
T10153 24534-24535 -LRB- denotes (
T10154 24542-24544 NN denotes 7B
T10155 24535-24541 NN denotes Figure
T10156 24544-24545 -RRB- denotes )
T10157 24545-24547 , denotes ,
T10158 24547-24552 WDT denotes which
T10159 24553-24556 VBP denotes are
T10160 24557-24571 JJ denotes noncentromeric
T10161 24585-24593 NNS denotes elements
T10162 24572-24580 VBN denotes repeated
T10163 24581-24584 NN denotes DNA
T10164 24594-24598 RB denotes also
T10165 24599-24607 VBN denotes enriched
T10166 24608-24610 IN denotes in
T10167 24611-24619 NN denotes H4K20me3
T10168 24620-24621 -LRB- denotes [
T10169 24621-24623 CD denotes 31
T10170 24623-24624 -RRB- denotes ]
T10171 24624-24625 . denotes .
T10172 24625-24766 sentence denotes This result shows that p150CAF-1 contributes to normal levels of H4K20me3 at pericentric heterochromatin, but not necessarily at other loci.
T10173 24626-24630 DT denotes This
T10174 24631-24637 NN denotes result
T10175 24638-24643 VBZ denotes shows
T10176 24644-24648 IN denotes that
T10177 24659-24670 VBZ denotes contributes
T10178 24649-24656 NN denotes p150CAF
T10179 24656-24657 HYPH denotes -
T10180 24657-24658 CD denotes 1
T10181 24671-24673 IN denotes to
T10182 24674-24680 JJ denotes normal
T10183 24681-24687 NNS denotes levels
T10184 24688-24690 IN denotes of
T10185 24691-24699 NN denotes H4K20me3
T10186 24700-24702 IN denotes at
T10187 24703-24714 JJ denotes pericentric
T10188 24715-24730 NN denotes heterochromatin
T10189 24730-24732 , denotes ,
T10190 24732-24735 CC denotes but
T10191 24736-24739 RB denotes not
T10192 24740-24751 RB denotes necessarily
T10193 24752-24754 IN denotes at
T10194 24755-24760 JJ denotes other
T10195 24761-24765 NNS denotes loci
T10196 24765-24766 . denotes .
T10197 24766-24908 sentence denotes The H3K9me3 mark [32] was also significantly reduced in p150CAF-1-depleted cells, though to a lesser extent than H4K20me3 (Figure 7A and 7B).
T10198 24767-24770 DT denotes The
T10199 24779-24783 NN denotes mark
T10200 24771-24778 NN denotes H3K9me3
T10201 24812-24819 VBN denotes reduced
T10202 24784-24785 -LRB- denotes [
T10203 24785-24787 CD denotes 32
T10204 24787-24788 -RRB- denotes ]
T10205 24789-24792 VBD denotes was
T10206 24793-24797 RB denotes also
T10207 24798-24811 RB denotes significantly
T10208 24820-24822 IN denotes in
T10209 24823-24830 NN denotes p150CAF
T10210 24833-24841 VBN denotes depleted
T10211 24830-24831 HYPH denotes -
T10212 24831-24832 CD denotes 1
T10213 24832-24833 HYPH denotes -
T10214 24842-24847 NNS denotes cells
T10215 24847-24849 , denotes ,
T10216 24849-24855 IN denotes though
T10217 24856-24858 IN denotes to
T10218 24859-24860 DT denotes a
T10219 24868-24874 NN denotes extent
T10220 24861-24867 JJR denotes lesser
T10221 24875-24879 IN denotes than
T10222 24880-24888 NN denotes H4K20me3
T10223 24889-24890 -LRB- denotes (
T10224 24897-24899 NN denotes 7A
T10225 24890-24896 NN denotes Figure
T10226 24900-24903 CC denotes and
T10227 24904-24906 NN denotes 7B
T10228 24906-24907 -RRB- denotes )
T10229 24907-24908 . denotes .
T10230 24908-26806 sentence denotes Figure 6 DNA CpG Methylation at Pericentric Heterochromatin Is Not Altered in p150CAF-1-Depleted ES Cells Total DNA was isolated from cells transfected with a control or the p150CAF-1 siRNA vector and digested with MaeII, whose recognition sequence is present in major satellite repeats. Digested DNA was run onto an agarose gel and analyzed by Southern blotting using the pSAT major satellite probe [47]. Figure 7 Alteration of Epigenetic Marking at Pericentric Heterochromatin in p150CAF-1-Depleted Cells (A) p150CAF-1 depletion leads to reduced H4K20me3 and H3K9me3 at pericentric heterochromatin. Enrichment of histone marks at major satellite repeats was determined by ChIP from control (cont) and p150CAF-1 (p150) siRNA-expressing ES cells. DNA prepared from the input and the antibody-bound fraction were run onto an agarose gel and analyzed by Southern blot with the pSAT major satellite repeat probe [47]. (B) Hybridization signals were quantified using an Instant Imager. After autoradiography, the membrane was stripped and rehybridized with a minor satellite probe [49]. After quantification, the membrane was stripped and rehybridized with an IAP LTR probe [50]. Results are presented as the amount of DNA immunoprecipitated from p150CAF-1-depleted ES cells divided by the DNA obtained from control cells. The figure shows the mean value and standard deviation of three independent ChIP experiments. (C and D) H3K9me3 and H4K20me3 fluorescence patterns are severely altered in p150CAF-1-depleted ES cells. Immunodetection of H3K9me3 (C, green), H4K20me3 (D, green), and HP1α (red) in control and p150CAF-1 siRNA-expressing ES cells. Merging of HP1α with H3K9me3 (C) and H4K20me3 (D) is shown in yellow. Scale bars represent 10 μm. In wild-type cells, most of H4K20me3 and H3K9me3 signals are present at the level of DAPI-dense domains when visualized by IF [29] (Figures 7C and 7D).
T10231 26655-26657 IN denotes In
T10232 26712-26715 VBP denotes are
T10233 26658-26662 JJ denotes wild
T10234 26663-26667 NN denotes type
T10235 26662-26663 HYPH denotes -
T10236 26668-26673 NNS denotes cells
T10237 26673-26675 , denotes ,
T10238 26675-26679 JJS denotes most
T10239 26680-26682 IN denotes of
T10240 26683-26691 NN denotes H4K20me3
T10241 26704-26711 NNS denotes signals
T10242 26692-26695 CC denotes and
T10243 26696-26703 NN denotes H3K9me3
T10244 26716-26723 JJ denotes present
T10245 26724-26726 IN denotes at
T10246 26727-26730 DT denotes the
T10247 26731-26736 NN denotes level
T10248 26737-26739 IN denotes of
T10249 26740-26744 NN denotes DAPI
T10250 26745-26750 JJ denotes dense
T10251 26744-26745 HYPH denotes -
T10252 26751-26758 NNS denotes domains
T10253 26759-26763 WRB denotes when
T10254 26764-26774 VBN denotes visualized
T10255 26775-26777 IN denotes by
T10256 26778-26780 NN denotes IF
T10257 26781-26782 -LRB- denotes [
T10258 26782-26784 CD denotes 29
T10259 26784-26785 -RRB- denotes ]
T10260 26786-26787 -LRB- denotes (
T10261 26795-26797 NN denotes 7C
T10262 26787-26794 NNS denotes Figures
T10263 26798-26801 CC denotes and
T10264 26802-26804 NN denotes 7D
T10265 26804-26805 -RRB- denotes )
T10266 26805-26806 . denotes .
T10267 26806-26924 sentence denotes H3K9me3 was severely perturbed in p150CAF-1-depleted cells, displaying a diffuse pattern similar to HP1α (Figure 7C).
T10268 26807-26814 NN denotes H3K9me3
T10269 26828-26837 VBN denotes perturbed
T10270 26815-26818 VBD denotes was
T10271 26819-26827 RB denotes severely
T10272 26838-26840 IN denotes in
T10273 26841-26848 NN denotes p150CAF
T10274 26851-26859 VBN denotes depleted
T10275 26848-26849 HYPH denotes -
T10276 26849-26850 CD denotes 1
T10277 26850-26851 HYPH denotes -
T10278 26860-26865 NNS denotes cells
T10279 26865-26867 , denotes ,
T10280 26867-26877 VBG denotes displaying
T10281 26878-26879 DT denotes a
T10282 26888-26895 NN denotes pattern
T10283 26880-26887 JJ denotes diffuse
T10284 26896-26903 JJ denotes similar
T10285 26904-26906 IN denotes to
T10286 26907-26911 NN denotes HP1α
T10287 26912-26913 -LRB- denotes (
T10288 26920-26922 NN denotes 7C
T10289 26913-26919 NN denotes Figure
T10290 26922-26923 -RRB- denotes )
T10291 26923-26924 . denotes .
T10292 26924-27092 sentence denotes The H4K20me3 pattern was even more severely altered, showing both a loss of the typical dots revealed in control cells and a reduction in signal intensity (Figure 7D).
T10293 26925-26928 DT denotes The
T10294 26938-26945 NN denotes pattern
T10295 26929-26937 NN denotes H4K20me3
T10296 26969-26976 VBN denotes altered
T10297 26946-26949 VBD denotes was
T10298 26950-26954 RB denotes even
T10299 26955-26959 RBR denotes more
T10300 26960-26968 RB denotes severely
T10301 26976-26978 , denotes ,
T10302 26978-26985 VBG denotes showing
T10303 26986-26990 CC denotes both
T10304 26993-26997 NN denotes loss
T10305 26991-26992 DT denotes a
T10306 26998-27000 IN denotes of
T10307 27001-27004 DT denotes the
T10308 27013-27017 NNS denotes dots
T10309 27005-27012 JJ denotes typical
T10310 27018-27026 VBN denotes revealed
T10311 27027-27029 IN denotes in
T10312 27030-27037 NN denotes control
T10313 27038-27043 NNS denotes cells
T10314 27044-27047 CC denotes and
T10315 27048-27049 DT denotes a
T10316 27050-27059 NN denotes reduction
T10317 27060-27062 IN denotes in
T10318 27063-27069 NN denotes signal
T10319 27070-27079 NN denotes intensity
T10320 27080-27081 -LRB- denotes (
T10321 27088-27090 NN denotes 7D
T10322 27081-27087 NN denotes Figure
T10323 27090-27091 -RRB- denotes )
T10324 27091-27092 . denotes .
T10325 27092-27218 sentence denotes Consistent with our ChIP experiments, residual H4K20me3 epitopes were detected at the level of relocated DAPI-dense material.
T10326 27093-27103 JJ denotes Consistent
T10327 27163-27171 VBN denotes detected
T10328 27104-27108 IN denotes with
T10329 27109-27112 PRP$ denotes our
T10330 27118-27129 NNS denotes experiments
T10331 27113-27117 NN denotes ChIP
T10332 27129-27131 , denotes ,
T10333 27131-27139 JJ denotes residual
T10334 27149-27157 NNS denotes epitopes
T10335 27140-27148 NN denotes H4K20me3
T10336 27158-27162 VBD denotes were
T10337 27172-27174 IN denotes at
T10338 27175-27178 DT denotes the
T10339 27179-27184 NN denotes level
T10340 27185-27187 IN denotes of
T10341 27188-27197 VBN denotes relocated
T10342 27209-27217 NN denotes material
T10343 27198-27202 NN denotes DAPI
T10344 27203-27208 JJ denotes dense
T10345 27202-27203 HYPH denotes -
T10346 27217-27218 . denotes .
T10347 27218-27395 sentence denotes Altogether, our results show that depletion of CAF-1 in ES cells leads to a simultaneous disruption of heterochromatin 3-D organization and an alteration in epigenetic marking.
T10348 27219-27229 RB denotes Altogether
T10349 27243-27247 VBP denotes show
T10350 27229-27231 , denotes ,
T10351 27231-27234 PRP$ denotes our
T10352 27235-27242 NNS denotes results
T10353 27248-27252 IN denotes that
T10354 27284-27289 VBZ denotes leads
T10355 27253-27262 NN denotes depletion
T10356 27263-27265 IN denotes of
T10357 27266-27269 NN denotes CAF
T10358 27269-27270 HYPH denotes -
T10359 27270-27271 CD denotes 1
T10360 27272-27274 IN denotes in
T10361 27275-27277 NN denotes ES
T10362 27278-27283 NNS denotes cells
T10363 27290-27292 IN denotes to
T10364 27293-27294 DT denotes a
T10365 27308-27318 NN denotes disruption
T10366 27295-27307 JJ denotes simultaneous
T10367 27319-27321 IN denotes of
T10368 27322-27337 NN denotes heterochromatin
T10369 27342-27354 NN denotes organization
T10370 27338-27339 CD denotes 3
T10371 27340-27341 NN denotes D
T10372 27339-27340 HYPH denotes -
T10373 27355-27358 CC denotes and
T10374 27359-27361 DT denotes an
T10375 27362-27372 NN denotes alteration
T10376 27373-27375 IN denotes in
T10377 27376-27386 JJ denotes epigenetic
T10378 27387-27394 NN denotes marking
T10379 27394-27395 . denotes .
T13122 27408-27412 RB denotes Here
T13123 27417-27424 VBP denotes provide
T13124 27412-27414 , denotes ,
T13125 27414-27416 PRP denotes we
T13126 27425-27433 NN denotes evidence
T13127 27434-27438 IN denotes that
T13128 27449-27452 VBZ denotes has
T13129 27439-27446 NN denotes p150CAF
T13130 27446-27447 HYPH denotes -
T13131 27447-27448 CD denotes 1
T13132 27453-27454 DT denotes a
T13133 27463-27471 NN denotes function
T13134 27455-27462 JJ denotes crucial
T13135 27472-27478 IN denotes during
T13136 27479-27484 NN denotes mouse
T13137 27491-27504 NN denotes embryogenesis
T13138 27485-27490 JJ denotes early
T13139 27505-27508 CC denotes and
T13140 27509-27511 IN denotes in
T13141 27512-27514 NN denotes ES
T13142 27515-27520 NNS denotes cells
T13143 27520-27521 . denotes .
T13144 27521-27624 sentence denotes Previous studies showed that CAF-1 is essential for the progression of DNA replication in vertebrates.
T13145 27522-27530 JJ denotes Previous
T13146 27531-27538 NNS denotes studies
T13147 27539-27545 VBD denotes showed
T13148 27546-27550 IN denotes that
T13149 27557-27559 VBZ denotes is
T13150 27551-27554 NN denotes CAF
T13151 27554-27555 HYPH denotes -
T13152 27555-27556 CD denotes 1
T13153 27560-27569 JJ denotes essential
T13154 27570-27573 IN denotes for
T13155 27574-27577 DT denotes the
T13156 27578-27589 NN denotes progression
T13157 27590-27592 IN denotes of
T13158 27593-27596 NN denotes DNA
T13159 27597-27608 NN denotes replication
T13160 27609-27611 IN denotes in
T13161 27612-27623 NNS denotes vertebrates
T13162 27623-27624 . denotes .
T13163 27624-27745 sentence denotes In Xenopus laevis, p150CAF-1 function is required for the rapid cell divisions that occur during early development [33].
T13164 27625-27627 IN denotes In
T13165 27666-27674 VBN denotes required
T13166 27628-27635 NNP denotes Xenopus
T13167 27636-27642 NNP denotes laevis
T13168 27642-27644 , denotes ,
T13169 27644-27651 NN denotes p150CAF
T13170 27654-27662 NN denotes function
T13171 27651-27652 HYPH denotes -
T13172 27652-27653 CD denotes 1
T13173 27663-27665 VBZ denotes is
T13174 27675-27678 IN denotes for
T13175 27679-27682 DT denotes the
T13176 27694-27703 NNS denotes divisions
T13177 27683-27688 JJ denotes rapid
T13178 27689-27693 NN denotes cell
T13179 27704-27708 WDT denotes that
T13180 27709-27714 VBP denotes occur
T13181 27715-27721 IN denotes during
T13182 27722-27727 JJ denotes early
T13183 27728-27739 NN denotes development
T13184 27740-27741 -LRB- denotes [
T13185 27741-27743 CD denotes 33
T13186 27743-27744 -RRB- denotes ]
T13187 27744-27745 . denotes .
T13188 27745-27853 sentence denotes Similarly, CAF-1 is essential in mammalian cell lines for the progression of DNA replication [16,23,24,34].
T13189 27746-27755 RB denotes Similarly
T13190 27763-27765 VBZ denotes is
T13191 27755-27757 , denotes ,
T13192 27757-27760 NN denotes CAF
T13193 27760-27761 HYPH denotes -
T13194 27761-27762 CD denotes 1
T13195 27766-27775 JJ denotes essential
T13196 27776-27778 IN denotes in
T13197 27779-27788 JJ denotes mammalian
T13198 27794-27799 NNS denotes lines
T13199 27789-27793 NN denotes cell
T13200 27800-27803 IN denotes for
T13201 27804-27807 DT denotes the
T13202 27808-27819 NN denotes progression
T13203 27820-27822 IN denotes of
T13204 27823-27826 NN denotes DNA
T13205 27827-27838 NN denotes replication
T13206 27839-27840 -LRB- denotes [
T13207 27849-27851 CD denotes 34
T13208 27840-27842 CD denotes 16
T13209 27842-27843 , denotes ,
T13210 27843-27845 CD denotes 23
T13211 27845-27846 , denotes ,
T13212 27846-27848 CD denotes 24
T13213 27848-27849 , denotes ,
T13214 27851-27852 -RRB- denotes ]
T13215 27852-27853 . denotes .
T13216 27853-27987 sentence denotes Our findings reveal a role for CAF-1 in the nuclear organization of heterochromatin domains during early development and in ES cells.
T13217 27854-27857 PRP$ denotes Our
T13218 27858-27866 NNS denotes findings
T13219 27867-27873 VBP denotes reveal
T13220 27874-27875 DT denotes a
T13221 27876-27880 NN denotes role
T13222 27881-27884 IN denotes for
T13223 27885-27888 NN denotes CAF
T13224 27888-27889 HYPH denotes -
T13225 27889-27890 CD denotes 1
T13226 27891-27893 IN denotes in
T13227 27894-27897 DT denotes the
T13228 27906-27918 NN denotes organization
T13229 27898-27905 JJ denotes nuclear
T13230 27919-27921 IN denotes of
T13231 27922-27937 NN denotes heterochromatin
T13232 27938-27945 NNS denotes domains
T13233 27946-27952 IN denotes during
T13234 27953-27958 JJ denotes early
T13235 27959-27970 NN denotes development
T13236 27971-27974 CC denotes and
T13237 27975-27977 IN denotes in
T13238 27978-27980 NN denotes ES
T13239 27981-27986 NNS denotes cells
T13240 27986-27987 . denotes .
T13241 27987-28196 sentence denotes We show that in p150CAF-1-depleted ES cells, while DNA replication initially persists without significant perturbation in nucleosomal organization, severe heterochromatin organization defects can be observed.
T13242 27988-27990 PRP denotes We
T13243 27991-27995 VBP denotes show
T13244 27996-28000 IN denotes that
T13245 28187-28195 VBN denotes observed
T13246 28001-28003 IN denotes in
T13247 28004-28011 NN denotes p150CAF
T13248 28014-28022 VBN denotes depleted
T13249 28011-28012 HYPH denotes -
T13250 28012-28013 CD denotes 1
T13251 28013-28014 HYPH denotes -
T13252 28026-28031 NNS denotes cells
T13253 28023-28025 NN denotes ES
T13254 28031-28033 , denotes ,
T13255 28033-28038 IN denotes while
T13256 28065-28073 VBZ denotes persists
T13257 28039-28042 NN denotes DNA
T13258 28043-28054 NN denotes replication
T13259 28055-28064 RB denotes initially
T13260 28074-28081 IN denotes without
T13261 28082-28093 JJ denotes significant
T13262 28094-28106 NN denotes perturbation
T13263 28107-28109 IN denotes in
T13264 28110-28121 JJ denotes nucleosomal
T13265 28122-28134 NN denotes organization
T13266 28134-28136 , denotes ,
T13267 28136-28142 JJ denotes severe
T13268 28172-28179 NNS denotes defects
T13269 28143-28158 NN denotes heterochromatin
T13270 28159-28171 NN denotes organization
T13271 28180-28183 MD denotes can
T13272 28184-28186 VB denotes be
T13273 28195-28196 . denotes .
T13274 28196-28319 sentence denotes Loss of p150CAF-1 did not affect PML bodies in ES cell nuclei, showing that nuclear architecture is not generally altered.
T13275 28197-28201 NN denotes Loss
T13276 28223-28229 VB denotes affect
T13277 28202-28204 IN denotes of
T13278 28205-28212 NN denotes p150CAF
T13279 28212-28213 HYPH denotes -
T13280 28213-28214 CD denotes 1
T13281 28215-28218 VBD denotes did
T13282 28219-28222 RB denotes not
T13283 28230-28233 NN denotes PML
T13284 28234-28240 NNS denotes bodies
T13285 28241-28243 IN denotes in
T13286 28244-28246 NN denotes ES
T13287 28252-28258 NNS denotes nuclei
T13288 28247-28251 NN denotes cell
T13289 28258-28260 , denotes ,
T13290 28260-28267 VBG denotes showing
T13291 28268-28272 IN denotes that
T13292 28311-28318 VBN denotes altered
T13293 28273-28280 JJ denotes nuclear
T13294 28281-28293 NN denotes architecture
T13295 28294-28296 VBZ denotes is
T13296 28297-28300 RB denotes not
T13297 28301-28310 RB denotes generally
T13298 28318-28319 . denotes .
T13299 28319-28409 sentence denotes Ultimately, p150CAF-1 depletion results in the arrest of ES cell division and cell death.
T13300 28320-28330 RB denotes Ultimately
T13301 28352-28359 VBZ denotes results
T13302 28330-28332 , denotes ,
T13303 28332-28339 NN denotes p150CAF
T13304 28342-28351 NN denotes depletion
T13305 28339-28340 HYPH denotes -
T13306 28340-28341 CD denotes 1
T13307 28360-28362 IN denotes in
T13308 28363-28366 DT denotes the
T13309 28367-28373 NN denotes arrest
T13310 28374-28376 IN denotes of
T13311 28377-28379 NN denotes ES
T13312 28380-28384 NN denotes cell
T13313 28385-28393 NN denotes division
T13314 28394-28397 CC denotes and
T13315 28398-28402 NN denotes cell
T13316 28403-28408 NN denotes death
T13317 28408-28409 . denotes .
T13318 28409-28591 sentence denotes Given the major defects observed in heterochromatin organization, it is tempting to speculate that these defects cause the developmental arrest in the embryos and death in ES cells.
T13319 28410-28415 VBN denotes Given
T13320 28479-28481 VBZ denotes is
T13321 28416-28419 DT denotes the
T13322 28426-28433 NNS denotes defects
T13323 28420-28425 JJ denotes major
T13324 28434-28442 VBN denotes observed
T13325 28443-28445 IN denotes in
T13326 28446-28461 NN denotes heterochromatin
T13327 28462-28474 NN denotes organization
T13328 28474-28476 , denotes ,
T13329 28476-28478 PRP denotes it
T13330 28482-28490 VBG denotes tempting
T13331 28491-28493 TO denotes to
T13332 28494-28503 VB denotes speculate
T13333 28504-28508 IN denotes that
T13334 28523-28528 VBP denotes cause
T13335 28509-28514 DT denotes these
T13336 28515-28522 NNS denotes defects
T13337 28529-28532 DT denotes the
T13338 28547-28553 NN denotes arrest
T13339 28533-28546 JJ denotes developmental
T13340 28554-28556 IN denotes in
T13341 28557-28560 DT denotes the
T13342 28561-28568 NNS denotes embryos
T13343 28569-28572 CC denotes and
T13344 28573-28578 NN denotes death
T13345 28579-28581 IN denotes in
T13346 28582-28584 NN denotes ES
T13347 28585-28590 NNS denotes cells
T13348 28590-28591 . denotes .
T13349 28591-28740 sentence denotes The role of CAF-1 in the nuclear organization of heterochromatin includes spatial localization, condensation, and clustering of pericentric domains.
T13350 28592-28595 DT denotes The
T13351 28596-28600 NN denotes role
T13352 28657-28665 VBZ denotes includes
T13353 28601-28603 IN denotes of
T13354 28604-28607 NN denotes CAF
T13355 28607-28608 HYPH denotes -
T13356 28608-28609 CD denotes 1
T13357 28610-28612 IN denotes in
T13358 28613-28616 DT denotes the
T13359 28625-28637 NN denotes organization
T13360 28617-28624 JJ denotes nuclear
T13361 28638-28640 IN denotes of
T13362 28641-28656 NN denotes heterochromatin
T13363 28666-28673 JJ denotes spatial
T13364 28674-28686 NN denotes localization
T13365 28686-28688 , denotes ,
T13366 28688-28700 NN denotes condensation
T13367 28700-28702 , denotes ,
T13368 28702-28705 CC denotes and
T13369 28706-28716 NN denotes clustering
T13370 28717-28719 IN denotes of
T13371 28720-28731 JJ denotes pericentric
T13372 28732-28739 NNS denotes domains
T13373 28739-28740 . denotes .
T13374 28740-28902 sentence denotes This important function of CAF-1 was not revealed in primary MEFs, 3T3 cells, or human cell lines, suggesting that it is specific of pluripotent embryonic cells.
T13375 28741-28745 DT denotes This
T13376 28756-28764 NN denotes function
T13377 28746-28755 JJ denotes important
T13378 28782-28790 VBN denotes revealed
T13379 28765-28767 IN denotes of
T13380 28768-28771 NN denotes CAF
T13381 28771-28772 HYPH denotes -
T13382 28772-28773 CD denotes 1
T13383 28774-28777 VBD denotes was
T13384 28778-28781 RB denotes not
T13385 28791-28793 IN denotes in
T13386 28794-28801 JJ denotes primary
T13387 28802-28806 NNS denotes MEFs
T13388 28806-28808 , denotes ,
T13389 28808-28811 NN denotes 3T3
T13390 28812-28817 NNS denotes cells
T13391 28817-28819 , denotes ,
T13392 28819-28821 CC denotes or
T13393 28822-28827 JJ denotes human
T13394 28833-28838 NNS denotes lines
T13395 28828-28832 NN denotes cell
T13396 28838-28840 , denotes ,
T13397 28840-28850 VBG denotes suggesting
T13398 28851-28855 IN denotes that
T13399 28859-28861 VBZ denotes is
T13400 28856-28858 PRP denotes it
T13401 28862-28870 JJ denotes specific
T13402 28871-28873 IN denotes of
T13403 28874-28885 JJ denotes pluripotent
T13404 28896-28901 NNS denotes cells
T13405 28886-28895 JJ denotes embryonic
T13406 28901-28902 . denotes .
T13407 28902-29124 sentence denotes Alternatively, early embryos and ES cells, whose genome is more plastic than somatic cells, might represent a particularly sensitive context in which the importance of CAF-1 in heterochromatin organization is exacerbated.
T13408 28903-28916 RB denotes Alternatively
T13409 29001-29010 VB denotes represent
T13410 28916-28918 , denotes ,
T13411 28918-28923 JJ denotes early
T13412 28924-28931 NNS denotes embryos
T13413 28932-28935 CC denotes and
T13414 28936-28938 NN denotes ES
T13415 28939-28944 NNS denotes cells
T13416 28944-28946 , denotes ,
T13417 28946-28951 WP$ denotes whose
T13418 28952-28958 NN denotes genome
T13419 28959-28961 VBZ denotes is
T13420 28962-28966 RBR denotes more
T13421 28967-28974 JJ denotes plastic
T13422 28975-28979 IN denotes than
T13423 28980-28987 JJ denotes somatic
T13424 28988-28993 NNS denotes cells
T13425 28993-28995 , denotes ,
T13426 28995-29000 MD denotes might
T13427 29011-29012 DT denotes a
T13428 29036-29043 NN denotes context
T13429 29013-29025 RB denotes particularly
T13430 29026-29035 JJ denotes sensitive
T13431 29044-29046 IN denotes in
T13432 29112-29123 VBN denotes exacerbated
T13433 29047-29052 WDT denotes which
T13434 29053-29056 DT denotes the
T13435 29057-29067 NN denotes importance
T13436 29068-29070 IN denotes of
T13437 29071-29074 NN denotes CAF
T13438 29074-29075 HYPH denotes -
T13439 29075-29076 CD denotes 1
T13440 29077-29079 IN denotes in
T13441 29080-29095 NN denotes heterochromatin
T13442 29096-29108 NN denotes organization
T13443 29109-29111 VBZ denotes is
T13444 29123-29124 . denotes .
T13445 29124-29240 sentence denotes In ES cells, major architectural chromatin proteins are hyperdynamic and bind relatively loosely to chromatin [35].
T13446 29125-29127 IN denotes In
T13447 29177-29180 VBP denotes are
T13448 29128-29130 NN denotes ES
T13449 29131-29136 NNS denotes cells
T13450 29136-29138 , denotes ,
T13451 29138-29143 JJ denotes major
T13452 29168-29176 NN denotes proteins
T13453 29144-29157 JJ denotes architectural
T13454 29158-29167 NN denotes chromatin
T13455 29181-29193 JJ denotes hyperdynamic
T13456 29194-29197 CC denotes and
T13457 29198-29202 VBP denotes bind
T13458 29203-29213 RB denotes relatively
T13459 29214-29221 RB denotes loosely
T13460 29222-29224 IN denotes to
T13461 29225-29234 NN denotes chromatin
T13462 29235-29236 -LRB- denotes [
T13463 29236-29238 CD denotes 35
T13464 29238-29239 -RRB- denotes ]
T13465 29239-29240 . denotes .
T13466 29240-29359 sentence denotes In this cellular context, our findings show that proper heterochromatin nuclear architecture relies on CAF-1 function.
T13467 29241-29243 IN denotes In
T13468 29280-29284 VBP denotes show
T13469 29244-29248 DT denotes this
T13470 29258-29265 NN denotes context
T13471 29249-29257 JJ denotes cellular
T13472 29265-29267 , denotes ,
T13473 29267-29270 PRP$ denotes our
T13474 29271-29279 NNS denotes findings
T13475 29285-29289 IN denotes that
T13476 29334-29340 VBZ denotes relies
T13477 29290-29296 JJ denotes proper
T13478 29321-29333 NN denotes architecture
T13479 29297-29312 NN denotes heterochromatin
T13480 29313-29320 JJ denotes nuclear
T13481 29341-29343 IN denotes on
T13482 29344-29347 NN denotes CAF
T13483 29350-29358 NN denotes function
T13484 29347-29348 HYPH denotes -
T13485 29348-29349 CD denotes 1
T13486 29358-29359 . denotes .
T13487 29359-29555 sentence denotes In contrast, in undifferentiated cells that are already lineage committed (such as MEFs) genome architecture might be more stable than in ES cells and thus cannot be disrupted by CAF-1 depletion.
T13488 29360-29362 IN denotes In
T13489 29475-29477 VB denotes be
T13490 29363-29371 NN denotes contrast
T13491 29371-29373 , denotes ,
T13492 29373-29375 IN denotes in
T13493 29376-29392 JJ denotes undifferentiated
T13494 29393-29398 NNS denotes cells
T13495 29399-29403 WDT denotes that
T13496 29424-29433 VBN denotes committed
T13497 29404-29407 VBP denotes are
T13498 29408-29415 RB denotes already
T13499 29416-29423 NN denotes lineage
T13500 29434-29435 -LRB- denotes (
T13501 29435-29439 JJ denotes such
T13502 29440-29442 IN denotes as
T13503 29443-29447 NNS denotes MEFs
T13504 29447-29448 -RRB- denotes )
T13505 29449-29455 NN denotes genome
T13506 29456-29468 NN denotes architecture
T13507 29469-29474 MD denotes might
T13508 29478-29482 RBR denotes more
T13509 29483-29489 JJ denotes stable
T13510 29490-29494 IN denotes than
T13511 29495-29497 IN denotes in
T13512 29498-29500 NN denotes ES
T13513 29501-29506 NNS denotes cells
T13514 29507-29510 CC denotes and
T13515 29511-29515 RB denotes thus
T13516 29526-29535 VBN denotes disrupted
T13517 29516-29519 MD denotes can
T13518 29519-29522 RB denotes not
T13519 29523-29525 VB denotes be
T13520 29536-29538 IN denotes by
T13521 29539-29542 NN denotes CAF
T13522 29545-29554 NN denotes depletion
T13523 29542-29543 HYPH denotes -
T13524 29543-29544 CD denotes 1
T13525 29554-29555 . denotes .
T13526 29555-29666 sentence denotes This important function of CAF-1 in pluripotent embryonic cells could be partially conserved during evolution.
T13527 29556-29560 DT denotes This
T13528 29571-29579 NN denotes function
T13529 29561-29570 JJ denotes important
T13530 29639-29648 VBN denotes conserved
T13531 29580-29582 IN denotes of
T13532 29583-29586 NN denotes CAF
T13533 29586-29587 HYPH denotes -
T13534 29587-29588 CD denotes 1
T13535 29589-29591 IN denotes in
T13536 29592-29603 JJ denotes pluripotent
T13537 29614-29619 NNS denotes cells
T13538 29604-29613 JJ denotes embryonic
T13539 29620-29625 MD denotes could
T13540 29626-29628 VB denotes be
T13541 29629-29638 RB denotes partially
T13542 29649-29655 IN denotes during
T13543 29656-29665 NN denotes evolution
T13544 29665-29666 . denotes .
T13545 29666-29829 sentence denotes Indeed, in Arabidopsis thaliana, in which CAF-1 is not essential for viability [36], loss of CAF-1 is associated with a mild alteration in chromocenter size [37].
T13546 29667-29673 RB denotes Indeed
T13547 29769-29779 VBN denotes associated
T13548 29673-29675 , denotes ,
T13549 29675-29677 IN denotes in
T13550 29678-29689 NNP denotes Arabidopsis
T13551 29690-29698 NNP denotes thaliana
T13552 29698-29700 , denotes ,
T13553 29700-29702 IN denotes in
T13554 29715-29717 VBZ denotes is
T13555 29703-29708 WDT denotes which
T13556 29709-29712 NN denotes CAF
T13557 29712-29713 HYPH denotes -
T13558 29713-29714 CD denotes 1
T13559 29718-29721 RB denotes not
T13560 29722-29731 JJ denotes essential
T13561 29732-29735 IN denotes for
T13562 29736-29745 NN denotes viability
T13563 29746-29747 -LRB- denotes [
T13564 29747-29749 CD denotes 36
T13565 29749-29750 -RRB- denotes ]
T13566 29750-29752 , denotes ,
T13567 29752-29756 NN denotes loss
T13568 29757-29759 IN denotes of
T13569 29760-29763 NN denotes CAF
T13570 29763-29764 HYPH denotes -
T13571 29764-29765 CD denotes 1
T13572 29766-29768 VBZ denotes is
T13573 29780-29784 IN denotes with
T13574 29785-29786 DT denotes a
T13575 29792-29802 NN denotes alteration
T13576 29787-29791 JJ denotes mild
T13577 29803-29805 IN denotes in
T13578 29806-29818 NN denotes chromocenter
T13579 29819-29823 NN denotes size
T13580 29824-29825 -LRB- denotes [
T13581 29825-29827 CD denotes 37
T13582 29827-29828 -RRB- denotes ]
T13583 29828-29829 . denotes .
T13584 29829-29957 sentence denotes This phenotype is somehow reminiscent of loss of CAF-1-mediated defects in heterochromatin organization in early mouse embryos.
T13585 29830-29834 DT denotes This
T13586 29835-29844 NN denotes phenotype
T13587 29845-29847 VBZ denotes is
T13588 29848-29855 RB denotes somehow
T13589 29856-29867 JJ denotes reminiscent
T13590 29868-29870 IN denotes of
T13591 29871-29875 NN denotes loss
T13592 29876-29878 IN denotes of
T13593 29879-29882 NN denotes CAF
T13594 29885-29893 VBN denotes mediated
T13595 29882-29883 HYPH denotes -
T13596 29883-29884 CD denotes 1
T13597 29884-29885 HYPH denotes -
T13598 29894-29901 NNS denotes defects
T13599 29902-29904 IN denotes in
T13600 29905-29920 NN denotes heterochromatin
T13601 29921-29933 NN denotes organization
T13602 29934-29936 IN denotes in
T13603 29937-29942 JJ denotes early
T13604 29949-29956 NNS denotes embryos
T13605 29943-29948 NN denotes mouse
T13606 29956-29957 . denotes .
T13607 29957-30155 sentence denotes In mouse ES cells, we show that CAF-1 is also required for regular levels of H4K20me3 at pericentric repeats, but not at IAP elements, which are repeated sequences spread all over the mouse genome.
T13608 29958-29960 IN denotes In
T13609 29980-29984 VBP denotes show
T13610 29961-29966 NN denotes mouse
T13611 29970-29975 NNS denotes cells
T13612 29967-29969 NN denotes ES
T13613 29975-29977 , denotes ,
T13614 29977-29979 PRP denotes we
T13615 29985-29989 IN denotes that
T13616 30004-30012 VBN denotes required
T13617 29990-29993 NN denotes CAF
T13618 29993-29994 HYPH denotes -
T13619 29994-29995 CD denotes 1
T13620 29996-29998 VBZ denotes is
T13621 29999-30003 RB denotes also
T13622 30013-30016 IN denotes for
T13623 30017-30024 JJ denotes regular
T13624 30025-30031 NNS denotes levels
T13625 30032-30034 IN denotes of
T13626 30035-30043 NN denotes H4K20me3
T13627 30044-30046 IN denotes at
T13628 30047-30058 JJ denotes pericentric
T13629 30059-30066 NNS denotes repeats
T13630 30066-30068 , denotes ,
T13631 30068-30071 CC denotes but
T13632 30072-30075 RB denotes not
T13633 30076-30078 IN denotes at
T13634 30079-30082 NN denotes IAP
T13635 30083-30091 NNS denotes elements
T13636 30091-30093 , denotes ,
T13637 30093-30098 WDT denotes which
T13638 30099-30102 VBP denotes are
T13639 30103-30111 VBN denotes repeated
T13640 30112-30121 NNS denotes sequences
T13641 30122-30128 VBN denotes spread
T13642 30129-30132 RB denotes all
T13643 30133-30137 IN denotes over
T13644 30138-30141 DT denotes the
T13645 30148-30154 NN denotes genome
T13646 30142-30147 NN denotes mouse
T13647 30154-30155 . denotes .
T13648 30155-30286 sentence denotes These data suggest that proper nuclear organization and epigenetic marking of pericentric heterochromatin are coupled in ES cells.
T13649 30156-30161 DT denotes These
T13650 30162-30166 NNS denotes data
T13651 30167-30174 VBP denotes suggest
T13652 30175-30179 IN denotes that
T13653 30266-30273 VBN denotes coupled
T13654 30180-30186 JJ denotes proper
T13655 30195-30207 NN denotes organization
T13656 30187-30194 JJ denotes nuclear
T13657 30208-30211 CC denotes and
T13658 30212-30222 JJ denotes epigenetic
T13659 30223-30230 NN denotes marking
T13660 30231-30233 IN denotes of
T13661 30234-30245 JJ denotes pericentric
T13662 30246-30261 NN denotes heterochromatin
T13663 30262-30265 VBP denotes are
T13664 30274-30276 IN denotes in
T13665 30277-30279 NN denotes ES
T13666 30280-30285 NNS denotes cells
T13667 30285-30286 . denotes .
T13668 30286-30412 sentence denotes Alternatively, 3-D organization of heterochromatin and epigenetic marking might represent two independent functions of CAF-1.
T13669 30287-30300 RB denotes Alternatively
T13670 30367-30376 VB denotes represent
T13671 30300-30302 , denotes ,
T13672 30302-30303 CD denotes 3
T13673 30304-30305 NN denotes D
T13674 30303-30304 HYPH denotes -
T13675 30306-30318 NN denotes organization
T13676 30319-30321 IN denotes of
T13677 30322-30337 NN denotes heterochromatin
T13678 30338-30341 CC denotes and
T13679 30342-30352 JJ denotes epigenetic
T13680 30353-30360 NN denotes marking
T13681 30361-30366 MD denotes might
T13682 30377-30380 CD denotes two
T13683 30393-30402 NNS denotes functions
T13684 30381-30392 JJ denotes independent
T13685 30403-30405 IN denotes of
T13686 30406-30409 NN denotes CAF
T13687 30409-30410 HYPH denotes -
T13688 30410-30411 CD denotes 1
T13689 30411-30412 . denotes .
T13690 30412-30588 sentence denotes The variable requirement for CAF-1 across species might reflect the acquisition of new properties affecting the function of histone H3 variants during evolution of eukaryotes.
T13691 30413-30416 DT denotes The
T13692 30426-30437 NN denotes requirement
T13693 30417-30425 JJ denotes variable
T13694 30469-30476 VB denotes reflect
T13695 30438-30441 IN denotes for
T13696 30442-30445 NN denotes CAF
T13697 30445-30446 HYPH denotes -
T13698 30446-30447 CD denotes 1
T13699 30448-30454 IN denotes across
T13700 30455-30462 NNS denotes species
T13701 30463-30468 MD denotes might
T13702 30477-30480 DT denotes the
T13703 30481-30492 NN denotes acquisition
T13704 30493-30495 IN denotes of
T13705 30496-30499 JJ denotes new
T13706 30500-30510 NNS denotes properties
T13707 30511-30520 VBG denotes affecting
T13708 30521-30524 DT denotes the
T13709 30525-30533 NN denotes function
T13710 30534-30536 IN denotes of
T13711 30537-30544 NN denotes histone
T13712 30545-30547 NN denotes H3
T13713 30548-30556 NNS denotes variants
T13714 30557-30563 IN denotes during
T13715 30564-30573 NN denotes evolution
T13716 30574-30576 IN denotes of
T13717 30577-30587 NNS denotes eukaryotes
T13718 30587-30588 . denotes .
T13719 30588-30668 sentence denotes CAF-1 is essential in mammals but dispensable in Saccharomyces cerevisiae [38].
T13720 30589-30592 NN denotes CAF
T13721 30595-30597 VBZ denotes is
T13722 30592-30593 HYPH denotes -
T13723 30593-30594 CD denotes 1
T13724 30598-30607 JJ denotes essential
T13725 30608-30610 IN denotes in
T13726 30611-30618 NNS denotes mammals
T13727 30619-30622 CC denotes but
T13728 30623-30634 JJ denotes dispensable
T13729 30635-30637 IN denotes in
T13730 30638-30651 NNP denotes Saccharomyces
T13731 30652-30662 NNP denotes cerevisiae
T13732 30663-30664 -LRB- denotes [
T13733 30664-30666 CD denotes 38
T13734 30666-30667 -RRB- denotes ]
T13735 30667-30668 . denotes .
T13736 30668-30956 sentence denotes Interestingly, the budding yeast genome does not contain heterochromatin regions equivalent to those of higher eukaryotes, and several hallmark features of heterochromatin such as di- and trimethylation at H3K9, H3K27, and H4K20 are not observed in the silent chromatin of S. cerevisiae.
T13737 30669-30682 RB denotes Interestingly
T13738 30718-30725 VB denotes contain
T13739 30682-30684 , denotes ,
T13740 30684-30687 DT denotes the
T13741 30702-30708 NN denotes genome
T13742 30688-30695 VBG denotes budding
T13743 30696-30701 NN denotes yeast
T13744 30709-30713 VBZ denotes does
T13745 30714-30717 RB denotes not
T13746 30726-30741 NN denotes heterochromatin
T13747 30742-30749 NNS denotes regions
T13748 30750-30760 JJ denotes equivalent
T13749 30761-30763 IN denotes to
T13750 30764-30769 DT denotes those
T13751 30770-30772 IN denotes of
T13752 30773-30779 JJR denotes higher
T13753 30780-30790 NNS denotes eukaryotes
T13754 30790-30792 , denotes ,
T13755 30792-30795 CC denotes and
T13756 30796-30803 JJ denotes several
T13757 30813-30821 NNS denotes features
T13758 30804-30812 NN denotes hallmark
T13759 30906-30914 VBN denotes observed
T13760 30822-30824 IN denotes of
T13761 30825-30840 NN denotes heterochromatin
T13762 30841-30845 JJ denotes such
T13763 30846-30848 IN denotes as
T13764 30849-30851 AFX denotes di
T13765 30857-30871 NN denotes trimethylation
T13766 30851-30852 HYPH denotes -
T13767 30853-30856 CC denotes and
T13768 30872-30874 IN denotes at
T13769 30875-30879 NN denotes H3K9
T13770 30879-30881 , denotes ,
T13771 30881-30886 NN denotes H3K27
T13772 30886-30888 , denotes ,
T13773 30888-30891 CC denotes and
T13774 30892-30897 NN denotes H4K20
T13775 30898-30901 VBP denotes are
T13776 30902-30905 RB denotes not
T13777 30915-30917 IN denotes in
T13778 30918-30921 DT denotes the
T13779 30929-30938 NN denotes chromatin
T13780 30922-30928 JJ denotes silent
T13781 30939-30941 IN denotes of
T13782 30942-30944 NNP denotes S.
T13783 30945-30955 NNP denotes cerevisiae
T13784 30955-30956 . denotes .
T13785 30956-31128 sentence denotes In mammals, H3K9 dimethylation is predominantly associated with H3.1, but not with H3.3, which carries modifications typically found in transcribed chromatin regions [39].
T13786 30957-30959 IN denotes In
T13787 31005-31015 VBN denotes associated
T13788 30960-30967 NNS denotes mammals
T13789 30967-30969 , denotes ,
T13790 30969-30973 NN denotes H3K9
T13791 30974-30987 NN denotes dimethylation
T13792 30988-30990 VBZ denotes is
T13793 30991-31004 RB denotes predominantly
T13794 31016-31020 IN denotes with
T13795 31021-31025 NN denotes H3.1
T13796 31025-31027 , denotes ,
T13797 31027-31030 CC denotes but
T13798 31031-31034 RB denotes not
T13799 31035-31039 IN denotes with
T13800 31040-31044 NN denotes H3.3
T13801 31044-31046 , denotes ,
T13802 31046-31051 WDT denotes which
T13803 31052-31059 VBZ denotes carries
T13804 31060-31073 NNS denotes modifications
T13805 31074-31083 RB denotes typically
T13806 31084-31089 VBN denotes found
T13807 31090-31092 IN denotes in
T13808 31093-31104 VBN denotes transcribed
T13809 31115-31122 NNS denotes regions
T13810 31105-31114 NN denotes chromatin
T13811 31123-31124 -LRB- denotes [
T13812 31124-31126 CD denotes 39
T13813 31126-31127 -RRB- denotes ]
T13814 31127-31128 . denotes .
T13815 31128-31317 sentence denotes Outside of the centromeric H3 variant, S. cerevisiae possesses only H3.3, which is expressed and incorporated into chromatin in a replication-independent fashion in higher eukaryotes [12].
T13816 31129-31136 IN denotes Outside
T13817 31182-31191 VBZ denotes possesses
T13818 31137-31139 IN denotes of
T13819 31140-31143 DT denotes the
T13820 31159-31166 NN denotes variant
T13821 31144-31155 JJ denotes centromeric
T13822 31156-31158 NN denotes H3
T13823 31166-31168 , denotes ,
T13824 31168-31170 NNP denotes S.
T13825 31171-31181 NNP denotes cerevisiae
T13826 31192-31196 RB denotes only
T13827 31197-31201 NN denotes H3.3
T13828 31201-31203 , denotes ,
T13829 31203-31208 WDT denotes which
T13830 31212-31221 VBN denotes expressed
T13831 31209-31211 VBZ denotes is
T13832 31222-31225 CC denotes and
T13833 31226-31238 VBN denotes incorporated
T13834 31239-31243 IN denotes into
T13835 31244-31253 NN denotes chromatin
T13836 31254-31256 IN denotes in
T13837 31257-31258 DT denotes a
T13838 31283-31290 NN denotes fashion
T13839 31259-31270 NN denotes replication
T13840 31271-31282 JJ denotes independent
T13841 31270-31271 HYPH denotes -
T13842 31291-31293 IN denotes in
T13843 31294-31300 JJR denotes higher
T13844 31301-31311 NNS denotes eukaryotes
T13845 31312-31313 -LRB- denotes [
T13846 31313-31315 CD denotes 12
T13847 31315-31316 -RRB- denotes ]
T13848 31316-31317 . denotes .
T13849 31317-31389 sentence denotes These data suggest a specific role for H3.1 in heterochromatin regions.
T13850 31318-31323 DT denotes These
T13851 31324-31328 NNS denotes data
T13852 31329-31336 VBP denotes suggest
T13853 31337-31338 DT denotes a
T13854 31348-31352 NN denotes role
T13855 31339-31347 JJ denotes specific
T13856 31353-31356 IN denotes for
T13857 31357-31361 NN denotes H3.1
T13858 31362-31364 IN denotes in
T13859 31365-31380 NN denotes heterochromatin
T13860 31381-31388 NNS denotes regions
T13861 31388-31389 . denotes .
T13862 31389-31584 sentence denotes We show here that CAF-1, which is a H3.1 replication-dependent loading complex [11], is specifically required for the nuclear organization of pericentric heterochromatin in embryos and ES cells.
T13863 31390-31392 PRP denotes We
T13864 31393-31397 VBP denotes show
T13865 31398-31402 RB denotes here
T13866 31403-31407 IN denotes that
T13867 31491-31499 VBN denotes required
T13868 31408-31411 NN denotes CAF
T13869 31411-31412 HYPH denotes -
T13870 31412-31413 CD denotes 1
T13871 31413-31415 , denotes ,
T13872 31415-31420 WDT denotes which
T13873 31421-31423 VBZ denotes is
T13874 31424-31425 DT denotes a
T13875 31461-31468 NN denotes complex
T13876 31426-31430 NN denotes H3.1
T13877 31431-31442 NN denotes replication
T13878 31443-31452 JJ denotes dependent
T13879 31442-31443 HYPH denotes -
T13880 31453-31460 NN denotes loading
T13881 31469-31470 -LRB- denotes [
T13882 31470-31472 CD denotes 11
T13883 31472-31473 -RRB- denotes ]
T13884 31473-31475 , denotes ,
T13885 31475-31477 VBZ denotes is
T13886 31478-31490 RB denotes specifically
T13887 31500-31503 IN denotes for
T13888 31504-31507 DT denotes the
T13889 31516-31528 NN denotes organization
T13890 31508-31515 JJ denotes nuclear
T13891 31529-31531 IN denotes of
T13892 31532-31543 JJ denotes pericentric
T13893 31544-31559 NN denotes heterochromatin
T13894 31560-31562 IN denotes in
T13895 31563-31570 NNS denotes embryos
T13896 31571-31574 CC denotes and
T13897 31575-31577 NN denotes ES
T13898 31578-31583 NNS denotes cells
T13899 31583-31584 . denotes .
T13900 31584-31771 sentence denotes One possibility would be a scenario in which incorporation of H3.1 into chromatin is required for the proper nuclear organization of constitutive heterochromatin in an embryonic context.
T13901 31585-31588 CD denotes One
T13902 31589-31600 NN denotes possibility
T13903 31607-31609 VB denotes be
T13904 31601-31606 MD denotes would
T13905 31610-31611 DT denotes a
T13906 31612-31620 NN denotes scenario
T13907 31621-31623 IN denotes in
T13908 31670-31678 VBN denotes required
T13909 31624-31629 WDT denotes which
T13910 31630-31643 NN denotes incorporation
T13911 31644-31646 IN denotes of
T13912 31647-31651 NN denotes H3.1
T13913 31652-31656 IN denotes into
T13914 31657-31666 NN denotes chromatin
T13915 31667-31669 VBZ denotes is
T13916 31679-31682 IN denotes for
T13917 31683-31686 DT denotes the
T13918 31702-31714 NN denotes organization
T13919 31687-31693 JJ denotes proper
T13920 31694-31701 JJ denotes nuclear
T13921 31715-31717 IN denotes of
T13922 31718-31730 JJ denotes constitutive
T13923 31731-31746 NN denotes heterochromatin
T13924 31747-31749 IN denotes in
T13925 31750-31752 DT denotes an
T13926 31763-31770 NN denotes context
T13927 31753-31762 JJ denotes embryonic
T13928 31770-31771 . denotes .
T13929 31771-31979 sentence denotes While this has to be addressed experimentally, it is worthwhile to mention an alternate possible mechanism that might explain the disruption of heterochromatin domains in p150CAF-1 null embryos and ES cells.
T13930 31772-31777 IN denotes While
T13931 31783-31786 VBZ denotes has
T13932 31778-31782 DT denotes this
T13933 31822-31824 VBZ denotes is
T13934 31787-31789 TO denotes to
T13935 31793-31802 VBN denotes addressed
T13936 31790-31792 VB denotes be
T13937 31803-31817 RB denotes experimentally
T13938 31817-31819 , denotes ,
T13939 31819-31821 PRP denotes it
T13940 31825-31835 JJ denotes worthwhile
T13941 31836-31838 TO denotes to
T13942 31839-31846 VB denotes mention
T13943 31847-31849 DT denotes an
T13944 31869-31878 NN denotes mechanism
T13945 31850-31859 JJ denotes alternate
T13946 31860-31868 JJ denotes possible
T13947 31879-31883 WDT denotes that
T13948 31890-31897 VB denotes explain
T13949 31884-31889 MD denotes might
T13950 31898-31901 DT denotes the
T13951 31902-31912 NN denotes disruption
T13952 31913-31915 IN denotes of
T13953 31916-31931 NN denotes heterochromatin
T13954 31932-31939 NNS denotes domains
T13955 31940-31942 IN denotes in
T13956 31943-31950 NN denotes p150CAF
T13957 31953-31957 JJ denotes null
T13958 31950-31951 HYPH denotes -
T13959 31951-31952 CD denotes 1
T13960 31958-31965 NNS denotes embryos
T13961 31966-31969 CC denotes and
T13962 31970-31972 NN denotes ES
T13963 31973-31978 NNS denotes cells
T13964 31978-31979 . denotes .
T13965 31979-32120 sentence denotes CAF-1 could be required for the loading, into heterochromatin, of an interacting partner required for the clustering of pericentric domains.
T13966 31980-31983 NN denotes CAF
T13967 31995-32003 VBN denotes required
T13968 31983-31984 HYPH denotes -
T13969 31984-31985 CD denotes 1
T13970 31986-31991 MD denotes could
T13971 31992-31994 VB denotes be
T13972 32004-32007 IN denotes for
T13973 32008-32011 DT denotes the
T13974 32012-32019 NN denotes loading
T13975 32019-32021 , denotes ,
T13976 32021-32025 IN denotes into
T13977 32026-32041 NN denotes heterochromatin
T13978 32041-32043 , denotes ,
T13979 32043-32045 IN denotes of
T13980 32046-32048 DT denotes an
T13981 32061-32068 NN denotes partner
T13982 32049-32060 VBG denotes interacting
T13983 32069-32077 VBN denotes required
T13984 32078-32081 IN denotes for
T13985 32082-32085 DT denotes the
T13986 32086-32096 NN denotes clustering
T13987 32097-32099 IN denotes of
T13988 32100-32111 JJ denotes pericentric
T13989 32112-32119 NNS denotes domains
T13990 32119-32120 . denotes .
T13991 32120-32310 sentence denotes Following one or two rounds of DNA replication in the absence of p150CAF-1, heterochromatin would become deprived of this molecule, which would cause the disruption of its 3-D organization.
T13992 32121-32130 VBG denotes Following
T13993 32219-32225 VB denotes become
T13994 32131-32134 CD denotes one
T13995 32142-32148 NNS denotes rounds
T13996 32135-32137 CC denotes or
T13997 32138-32141 CD denotes two
T13998 32149-32151 IN denotes of
T13999 32152-32155 NN denotes DNA
T14000 32156-32167 NN denotes replication
T14001 32168-32170 IN denotes in
T14002 32171-32174 DT denotes the
T14003 32175-32182 NN denotes absence
T14004 32183-32185 IN denotes of
T14005 32186-32193 NN denotes p150CAF
T14006 32193-32194 HYPH denotes -
T14007 32194-32195 CD denotes 1
T14008 32195-32197 , denotes ,
T14009 32197-32212 NN denotes heterochromatin
T14010 32213-32218 MD denotes would
T14011 32226-32234 JJ denotes deprived
T14012 32235-32237 IN denotes of
T14013 32238-32242 DT denotes this
T14014 32243-32251 NN denotes molecule
T14015 32251-32253 , denotes ,
T14016 32253-32258 WDT denotes which
T14017 32265-32270 VB denotes cause
T14018 32259-32264 MD denotes would
T14019 32271-32274 DT denotes the
T14020 32275-32285 NN denotes disruption
T14021 32286-32288 IN denotes of
T14022 32289-32292 PRP$ denotes its
T14023 32297-32309 NN denotes organization
T14024 32293-32294 CD denotes 3
T14025 32295-32296 NN denotes D
T14026 32294-32295 HYPH denotes -
T14027 32309-32310 . denotes .
T14028 32310-32388 sentence denotes A potential candidate is the HP1 protein, which interacts with CAF-1 [13,16].
T14029 32311-32312 DT denotes A
T14030 32323-32332 NN denotes candidate
T14031 32313-32322 JJ denotes potential
T14032 32333-32335 VBZ denotes is
T14033 32336-32339 DT denotes the
T14034 32344-32351 NN denotes protein
T14035 32340-32343 NN denotes HP1
T14036 32351-32353 , denotes ,
T14037 32353-32358 WDT denotes which
T14038 32359-32368 VBZ denotes interacts
T14039 32369-32373 IN denotes with
T14040 32374-32377 NN denotes CAF
T14041 32377-32378 HYPH denotes -
T14042 32378-32379 CD denotes 1
T14043 32380-32381 -LRB- denotes [
T14044 32384-32386 CD denotes 16
T14045 32381-32383 CD denotes 13
T14046 32383-32384 , denotes ,
T14047 32386-32387 -RRB- denotes ]
T14048 32387-32388 . denotes .
T14049 32388-32585 sentence denotes In agreement with a recent report [40], our analysis of heterochromatin in pre-implantation embryos has revealed drastic changes in nuclear organization between the two-cell and blastocyst stages.
T14050 32389-32391 IN denotes In
T14051 32493-32501 VBN denotes revealed
T14052 32392-32401 NN denotes agreement
T14053 32402-32406 IN denotes with
T14054 32407-32408 DT denotes a
T14055 32416-32422 NN denotes report
T14056 32409-32415 JJ denotes recent
T14057 32423-32424 -LRB- denotes [
T14058 32424-32426 CD denotes 40
T14059 32426-32427 -RRB- denotes ]
T14060 32427-32429 , denotes ,
T14061 32429-32432 PRP$ denotes our
T14062 32433-32441 NN denotes analysis
T14063 32442-32444 IN denotes of
T14064 32445-32460 NN denotes heterochromatin
T14065 32461-32463 IN denotes in
T14066 32464-32480 JJ denotes pre-implantation
T14067 32481-32488 NNS denotes embryos
T14068 32489-32492 VBZ denotes has
T14069 32502-32509 JJ denotes drastic
T14070 32510-32517 NNS denotes changes
T14071 32518-32520 IN denotes in
T14072 32521-32528 JJ denotes nuclear
T14073 32529-32541 NN denotes organization
T14074 32542-32549 IN denotes between
T14075 32550-32553 DT denotes the
T14076 32578-32584 NNS denotes stages
T14077 32554-32557 CD denotes two
T14078 32558-32562 NN denotes cell
T14079 32557-32558 HYPH denotes -
T14080 32563-32566 CC denotes and
T14081 32567-32577 NN denotes blastocyst
T14082 32584-32585 . denotes .
T14083 32585-32778 sentence denotes Cloning experiments in mouse revealed that the nuclear organization of heterochromatin in ES cell nuclei was quickly reverted into the one-cell stage-specific form after nuclear transfer [40].
T14084 32586-32593 NN denotes Cloning
T14085 32594-32605 NNS denotes experiments
T14086 32615-32623 VBD denotes revealed
T14087 32606-32608 IN denotes in
T14088 32609-32614 NN denotes mouse
T14089 32624-32628 IN denotes that
T14090 32703-32711 VBN denotes reverted
T14091 32629-32632 DT denotes the
T14092 32641-32653 NN denotes organization
T14093 32633-32640 JJ denotes nuclear
T14094 32654-32656 IN denotes of
T14095 32657-32672 NN denotes heterochromatin
T14096 32673-32675 IN denotes in
T14097 32676-32678 NN denotes ES
T14098 32684-32690 NNS denotes nuclei
T14099 32679-32683 NN denotes cell
T14100 32691-32694 VBD denotes was
T14101 32695-32702 RB denotes quickly
T14102 32712-32716 IN denotes into
T14103 32717-32720 DT denotes the
T14104 32745-32749 NN denotes form
T14105 32721-32724 CD denotes one
T14106 32725-32729 NN denotes cell
T14107 32724-32725 HYPH denotes -
T14108 32730-32735 NN denotes stage
T14109 32736-32744 JJ denotes specific
T14110 32735-32736 HYPH denotes -
T14111 32750-32755 IN denotes after
T14112 32756-32763 JJ denotes nuclear
T14113 32764-32772 NN denotes transfer
T14114 32773-32774 -LRB- denotes [
T14115 32774-32776 CD denotes 40
T14116 32776-32777 -RRB- denotes ]
T14117 32777-32778 . denotes .
T14118 32778-32916 sentence denotes Hence, remodeling of heterochromatin 3-D organization parallels nuclear reprogramming toward an early embryonic status in cloned embryos.
T14119 32779-32784 RB denotes Hence
T14120 32833-32842 VBZ denotes parallels
T14121 32784-32786 , denotes ,
T14122 32786-32796 NN denotes remodeling
T14123 32797-32799 IN denotes of
T14124 32800-32815 NN denotes heterochromatin
T14125 32820-32832 NN denotes organization
T14126 32816-32817 CD denotes 3
T14127 32818-32819 NN denotes D
T14128 32817-32818 HYPH denotes -
T14129 32843-32850 JJ denotes nuclear
T14130 32851-32864 NN denotes reprogramming
T14131 32865-32871 IN denotes toward
T14132 32872-32874 DT denotes an
T14133 32891-32897 NN denotes status
T14134 32875-32880 JJ denotes early
T14135 32881-32890 JJ denotes embryonic
T14136 32898-32900 IN denotes in
T14137 32901-32907 VBN denotes cloned
T14138 32908-32915 NNS denotes embryos
T14139 32915-32916 . denotes .
T14140 32916-33101 sentence denotes This drastic reorganization of heterochromatin organization is similar to that observed in p150CAF-1-depleted ES cells, and in developmentally arrested 16-cell stage Chaf1a−/− embryos.
T14141 32917-32921 DT denotes This
T14142 32930-32944 NN denotes reorganization
T14143 32922-32929 JJ denotes drastic
T14144 32977-32979 VBZ denotes is
T14145 32945-32947 IN denotes of
T14146 32948-32963 NN denotes heterochromatin
T14147 32964-32976 NN denotes organization
T14148 32980-32987 JJ denotes similar
T14149 32988-32990 IN denotes to
T14150 32991-32995 DT denotes that
T14151 32996-33004 VBN denotes observed
T14152 33005-33007 IN denotes in
T14153 33008-33015 NN denotes p150CAF
T14154 33018-33026 VBN denotes depleted
T14155 33015-33016 HYPH denotes -
T14156 33016-33017 CD denotes 1
T14157 33017-33018 HYPH denotes -
T14158 33030-33035 NNS denotes cells
T14159 33027-33029 NN denotes ES
T14160 33035-33037 , denotes ,
T14161 33037-33040 CC denotes and
T14162 33041-33043 IN denotes in
T14163 33044-33059 RB denotes developmentally
T14164 33060-33068 VBN denotes arrested
T14165 33093-33100 NNS denotes embryos
T14166 33069-33071 CD denotes 16
T14167 33072-33076 NN denotes cell
T14168 33071-33072 HYPH denotes -
T14169 33077-33082 NN denotes stage
T14170 33083-33089 NN denotes Chaf1a
T14171 33089-33090 SYM denotes
T14172 33090-33091 HYPH denotes /
T14173 33091-33092 SYM denotes
T14174 33100-33101 . denotes .
T14175 33101-33241 sentence denotes These data show that CAF-1 is involved in setting up proper heterochromatin architecture during the first cell divisions of embryonic life.
T14176 33102-33107 DT denotes These
T14177 33108-33112 NNS denotes data
T14178 33113-33117 VBP denotes show
T14179 33118-33122 IN denotes that
T14180 33132-33140 VBN denotes involved
T14181 33123-33126 NN denotes CAF
T14182 33126-33127 HYPH denotes -
T14183 33127-33128 CD denotes 1
T14184 33129-33131 VBZ denotes is
T14185 33141-33143 IN denotes in
T14186 33144-33151 VBG denotes setting
T14187 33152-33154 RP denotes up
T14188 33155-33161 JJ denotes proper
T14189 33178-33190 NN denotes architecture
T14190 33162-33177 NN denotes heterochromatin
T14191 33191-33197 IN denotes during
T14192 33198-33201 DT denotes the
T14193 33213-33222 NNS denotes divisions
T14194 33202-33207 JJ denotes first
T14195 33208-33212 NN denotes cell
T14196 33223-33225 IN denotes of
T14197 33226-33235 JJ denotes embryonic
T14198 33236-33240 NN denotes life
T14199 33240-33241 . denotes .
T14200 33241-33449 sentence denotes Given the importance of nuclear organization in the control of gene expression [21,41], this finding suggests that CAF-1 contributes to the coordinated programs of gene expression during early embryogenesis.
T14201 33242-33247 VBN denotes Given
T14202 33343-33351 VBZ denotes suggests
T14203 33248-33251 DT denotes the
T14204 33252-33262 NN denotes importance
T14205 33263-33265 IN denotes of
T14206 33266-33273 JJ denotes nuclear
T14207 33274-33286 NN denotes organization
T14208 33287-33289 IN denotes in
T14209 33290-33293 DT denotes the
T14210 33294-33301 NN denotes control
T14211 33302-33304 IN denotes of
T14212 33305-33309 NN denotes gene
T14213 33310-33320 NN denotes expression
T14214 33321-33322 -LRB- denotes [
T14215 33325-33327 CD denotes 41
T14216 33322-33324 CD denotes 21
T14217 33324-33325 , denotes ,
T14218 33327-33328 -RRB- denotes ]
T14219 33328-33330 , denotes ,
T14220 33330-33334 DT denotes this
T14221 33335-33342 NN denotes finding
T14222 33352-33356 IN denotes that
T14223 33363-33374 VBZ denotes contributes
T14224 33357-33360 NN denotes CAF
T14225 33360-33361 HYPH denotes -
T14226 33361-33362 CD denotes 1
T14227 33375-33377 IN denotes to
T14228 33378-33381 DT denotes the
T14229 33394-33402 NNS denotes programs
T14230 33382-33393 VBN denotes coordinated
T14231 33403-33405 IN denotes of
T14232 33406-33410 NN denotes gene
T14233 33411-33421 NN denotes expression
T14234 33422-33428 IN denotes during
T14235 33429-33434 JJ denotes early
T14236 33435-33448 NN denotes embryogenesis
T14237 33448-33449 . denotes .
T14238 33449-33588 sentence denotes Our findings open new perspectives in the understanding of chromatin dynamics during early development and in pluripotent embryonic cells.
T14239 33450-33453 PRP$ denotes Our
T14240 33454-33462 NNS denotes findings
T14241 33463-33467 VBP denotes open
T14242 33468-33471 JJ denotes new
T14243 33472-33484 NNS denotes perspectives
T14244 33485-33487 IN denotes in
T14245 33488-33491 DT denotes the
T14246 33492-33505 NN denotes understanding
T14247 33506-33508 IN denotes of
T14248 33509-33518 NN denotes chromatin
T14249 33519-33527 NNS denotes dynamics
T14250 33528-33534 IN denotes during
T14251 33535-33540 JJ denotes early
T14252 33541-33552 NN denotes development
T14253 33553-33556 CC denotes and
T14254 33557-33559 IN denotes in
T14255 33560-33571 JJ denotes pluripotent
T14256 33582-33587 NNS denotes cells
T14257 33572-33581 JJ denotes embryonic
T14258 33587-33588 . denotes .
T14259 33588-33751 sentence denotes While most studies focused on the role of DNA methylation and histone modifying enzymes [3], our data point to the importance of the chromatin assembly machinery.
T14260 33589-33594 IN denotes While
T14261 33608-33615 VBD denotes focused
T14262 33595-33599 JJS denotes most
T14263 33600-33607 NNS denotes studies
T14264 33691-33696 VBP denotes point
T14265 33616-33618 IN denotes on
T14266 33619-33622 DT denotes the
T14267 33623-33627 NN denotes role
T14268 33628-33630 IN denotes of
T14269 33631-33634 NN denotes DNA
T14270 33635-33646 NN denotes methylation
T14271 33647-33650 CC denotes and
T14272 33651-33658 NN denotes histone
T14273 33659-33668 VBG denotes modifying
T14274 33669-33676 NNS denotes enzymes
T14275 33677-33678 -LRB- denotes [
T14276 33678-33679 CD denotes 3
T14277 33679-33680 -RRB- denotes ]
T14278 33680-33682 , denotes ,
T14279 33682-33685 PRP$ denotes our
T14280 33686-33690 NNS denotes data
T14281 33697-33699 IN denotes to
T14282 33700-33703 DT denotes the
T14283 33704-33714 NN denotes importance
T14284 33715-33717 IN denotes of
T14285 33718-33721 DT denotes the
T14286 33741-33750 NN denotes machinery
T14287 33722-33731 NN denotes chromatin
T14288 33732-33740 NN denotes assembly
T14289 33750-33751 . denotes .
T14290 33751-33911 sentence denotes We show that in addition to assembling nucleosomes, CAF-1 provides spatial and epigenetic information to heterochromatin domains in early embryos and ES cells.
T14291 33752-33754 PRP denotes We
T14292 33755-33759 VBP denotes show
T14293 33760-33764 IN denotes that
T14294 33810-33818 VBZ denotes provides
T14295 33765-33767 IN denotes in
T14296 33768-33776 NN denotes addition
T14297 33777-33779 IN denotes to
T14298 33780-33790 VBG denotes assembling
T14299 33791-33802 NNS denotes nucleosomes
T14300 33802-33804 , denotes ,
T14301 33804-33807 NN denotes CAF
T14302 33807-33808 HYPH denotes -
T14303 33808-33809 CD denotes 1
T14304 33819-33826 JJ denotes spatial
T14305 33842-33853 NN denotes information
T14306 33827-33830 CC denotes and
T14307 33831-33841 JJ denotes epigenetic
T14308 33854-33856 IN denotes to
T14309 33857-33872 NN denotes heterochromatin
T14310 33873-33880 NNS denotes domains
T14311 33881-33883 IN denotes in
T14312 33884-33889 JJ denotes early
T14313 33890-33897 NNS denotes embryos
T14314 33898-33901 CC denotes and
T14315 33902-33904 NN denotes ES
T14316 33905-33910 NNS denotes cells
T14317 33910-33911 . denotes .
T14828 33936-33946 NN denotes Generation
T14829 33947-33949 IN denotes of
T14830 33950-33956 NN denotes Chaf1a
T14831 33957-33963 NN denotes mutant
T14832 33964-33968 NNS denotes mice
T14833 33969-33972 CC denotes and
T14834 33973-33980 NNS denotes embryos
T14835 33980-33981 . denotes .
T14836 33981-34069 sentence denotes Using PCR, we amplified two genomic fragments (about 3 kb each) flanking Chaf1a exon 3.
T14837 33982-33987 VBG denotes Using
T14838 33996-34005 VBD denotes amplified
T14839 33988-33991 NN denotes PCR
T14840 33991-33993 , denotes ,
T14841 33993-33995 PRP denotes we
T14842 34006-34009 CD denotes two
T14843 34018-34027 NNS denotes fragments
T14844 34010-34017 JJ denotes genomic
T14845 34028-34029 -LRB- denotes (
T14846 34037-34039 NN denotes kb
T14847 34029-34034 IN denotes about
T14848 34035-34036 CD denotes 3
T14849 34040-34044 DT denotes each
T14850 34044-34045 -RRB- denotes )
T14851 34046-34054 VBG denotes flanking
T14852 34055-34061 NN denotes Chaf1a
T14853 34062-34066 NN denotes exon
T14854 34067-34068 CD denotes 3
T14855 34068-34069 . denotes .
T14856 34069-34210 sentence denotes These DNA fragments were assembled by conventional cloning with the neomycin and DT (diphtheria toxin) cassettes, as described in Figure 1A.
T14857 34070-34075 DT denotes These
T14858 34080-34089 NNS denotes fragments
T14859 34076-34079 NN denotes DNA
T14860 34095-34104 VBN denotes assembled
T14861 34090-34094 VBD denotes were
T14862 34105-34107 IN denotes by
T14863 34108-34120 JJ denotes conventional
T14864 34121-34128 NN denotes cloning
T14865 34129-34133 IN denotes with
T14866 34134-34137 DT denotes the
T14867 34173-34182 NNS denotes cassettes
T14868 34138-34146 NN denotes neomycin
T14869 34147-34150 CC denotes and
T14870 34151-34153 NN denotes DT
T14871 34154-34155 -LRB- denotes (
T14872 34155-34165 NN denotes diphtheria
T14873 34166-34171 NN denotes toxin
T14874 34171-34172 -RRB- denotes )
T14875 34182-34184 , denotes ,
T14876 34184-34186 IN denotes as
T14877 34187-34196 VBN denotes described
T14878 34197-34199 IN denotes in
T14879 34200-34206 NN denotes Figure
T14880 34207-34209 NN denotes 1A
T14881 34209-34210 . denotes .
T14882 34210-34272 sentence denotes The construct was transfected in ES cells by electroporation.
T14883 34211-34214 DT denotes The
T14884 34215-34224 NN denotes construct
T14885 34229-34240 VBN denotes transfected
T14886 34225-34228 VBD denotes was
T14887 34241-34243 IN denotes in
T14888 34244-34246 NN denotes ES
T14889 34247-34252 NNS denotes cells
T14890 34253-34255 IN denotes by
T14891 34256-34271 NN denotes electroporation
T14892 34271-34272 . denotes .
T14893 34272-34419 sentence denotes We identified recombinant ES cells carrying the mutant Chaf1a tm1Ger (abbreviated Chaf1a − in the manuscript) allele by Southern blot (Figure 1A).
T14894 34273-34275 PRP denotes We
T14895 34276-34286 VBD denotes identified
T14896 34287-34298 JJ denotes recombinant
T14897 34302-34307 NNS denotes cells
T14898 34299-34301 NN denotes ES
T14899 34308-34316 VBG denotes carrying
T14900 34317-34320 DT denotes the
T14901 34383-34389 NN denotes allele
T14902 34321-34327 NN denotes mutant
T14903 34328-34341 NN denotes Chaf1a tm1Ger
T14904 34342-34343 -LRB- denotes (
T14905 34343-34354 VBN denotes abbreviated
T14906 34355-34361 NN denotes Chaf1a
T14907 34362-34363 SYM denotes
T14908 34364-34366 IN denotes in
T14909 34367-34370 DT denotes the
T14910 34371-34381 NN denotes manuscript
T14911 34381-34382 -RRB- denotes )
T14912 34390-34392 IN denotes by
T14913 34393-34401 NNP denotes Southern
T14914 34402-34406 NN denotes blot
T14915 34407-34408 -LRB- denotes (
T14916 34415-34417 NN denotes 1A
T14917 34408-34414 NN denotes Figure
T14918 34417-34418 -RRB- denotes )
T14919 34418-34419 . denotes .
T14920 34419-34506 sentence denotes We derived Chaf1a +/− mice by injecting recombined ES cells into C57BL/6N blastocysts.
T14921 34420-34422 PRP denotes We
T14922 34423-34430 VBD denotes derived
T14923 34431-34437 NN denotes Chaf1a
T14924 34442-34446 NNS denotes mice
T14925 34438-34439 SYM denotes +
T14926 34439-34440 HYPH denotes /
T14927 34440-34441 SYM denotes
T14928 34447-34449 IN denotes by
T14929 34450-34459 VBG denotes injecting
T14930 34460-34470 VBN denotes recombined
T14931 34474-34479 NNS denotes cells
T14932 34471-34473 NN denotes ES
T14933 34480-34484 IN denotes into
T14934 34485-34490 NN denotes C57BL
T14935 34491-34493 NN denotes 6N
T14936 34490-34491 HYPH denotes /
T14937 34494-34505 NNS denotes blastocysts
T14938 34505-34506 . denotes .
T14939 34506-34609 sentence denotes E4 embryos obtained from the intercross of Chaf1a +/− mice were genotyped by nested-PCR amplification.
T14940 34507-34509 NN denotes E4
T14941 34510-34517 NNS denotes embryos
T14942 34571-34580 VBN denotes genotyped
T14943 34518-34526 VBN denotes obtained
T14944 34527-34531 IN denotes from
T14945 34532-34535 DT denotes the
T14946 34536-34546 NN denotes intercross
T14947 34547-34549 IN denotes of
T14948 34550-34556 NN denotes Chaf1a
T14949 34561-34565 NNS denotes mice
T14950 34557-34558 SYM denotes +
T14951 34558-34559 HYPH denotes /
T14952 34559-34560 SYM denotes
T14953 34566-34570 VBD denotes were
T14954 34581-34583 IN denotes by
T14955 34584-34590 NN denotes nested
T14956 34591-34594 NN denotes PCR
T14957 34590-34591 HYPH denotes -
T14958 34595-34608 NN denotes amplification
T14959 34608-34609 . denotes .
T14960 34609-34760 sentence denotes Embryos were collected in a PCR reaction mix containing oligonucleotide primers 1, 2, and 3 (Figure 1A) that amplify the wild-type and mutant alleles.
T14961 34610-34617 NNS denotes Embryos
T14962 34623-34632 VBN denotes collected
T14963 34618-34622 VBD denotes were
T14964 34633-34635 IN denotes in
T14965 34636-34637 DT denotes a
T14966 34651-34654 NN denotes mix
T14967 34638-34641 NN denotes PCR
T14968 34642-34650 NN denotes reaction
T14969 34655-34665 VBG denotes containing
T14970 34666-34681 NN denotes oligonucleotide
T14971 34690-34691 CD denotes 1
T14972 34682-34689 NNS denotes primers
T14973 34691-34693 , denotes ,
T14974 34693-34694 CD denotes 2
T14975 34694-34696 , denotes ,
T14976 34696-34699 CC denotes and
T14977 34700-34701 CD denotes 3
T14978 34702-34703 -LRB- denotes (
T14979 34710-34712 NN denotes 1A
T14980 34703-34709 NN denotes Figure
T14981 34712-34713 -RRB- denotes )
T14982 34714-34718 WDT denotes that
T14983 34719-34726 VBP denotes amplify
T14984 34727-34730 DT denotes the
T14985 34752-34759 NNS denotes alleles
T14986 34731-34735 JJ denotes wild
T14987 34736-34740 NN denotes type
T14988 34735-34736 HYPH denotes -
T14989 34741-34744 CC denotes and
T14990 34745-34751 NN denotes mutant
T14991 34759-34760 . denotes .
T14992 34760-34911 sentence denotes After 30 cycles of amplification, 1 μl of each PCR reaction was used in a second round of PCR amplification with a new set of oligonucleotide primers.
T14993 34761-34766 IN denotes After
T14994 34825-34829 VBN denotes used
T14995 34767-34769 CD denotes 30
T14996 34770-34776 NNS denotes cycles
T14997 34777-34779 IN denotes of
T14998 34780-34793 NN denotes amplification
T14999 34793-34795 , denotes ,
T15000 34795-34796 CD denotes 1
T15001 34797-34799 NN denotes μl
T15002 34800-34802 IN denotes of
T15003 34803-34807 DT denotes each
T15004 34812-34820 NN denotes reaction
T15005 34808-34811 NN denotes PCR
T15006 34821-34824 VBD denotes was
T15007 34830-34832 IN denotes in
T15008 34833-34834 DT denotes a
T15009 34842-34847 NN denotes round
T15010 34835-34841 JJ denotes second
T15011 34848-34850 IN denotes of
T15012 34851-34854 NN denotes PCR
T15013 34855-34868 NN denotes amplification
T15014 34869-34873 IN denotes with
T15015 34874-34875 DT denotes a
T15016 34880-34883 NN denotes set
T15017 34876-34879 JJ denotes new
T15018 34884-34886 IN denotes of
T15019 34887-34902 NN denotes oligonucleotide
T15020 34903-34910 NNS denotes primers
T15021 34910-34911 . denotes .
T15022 34911-35077 sentence denotes After 30 cycles of amplification, PCR reactions were run onto an agarose gel, which revealed the presence of the wild-type (150 bp) and recombinant (200 bp) alleles.
T15023 34912-34917 IN denotes After
T15024 34965-34968 VBN denotes run
T15025 34918-34920 CD denotes 30
T15026 34921-34927 NNS denotes cycles
T15027 34928-34930 IN denotes of
T15028 34931-34944 NN denotes amplification
T15029 34944-34946 , denotes ,
T15030 34946-34949 NN denotes PCR
T15031 34950-34959 NNS denotes reactions
T15032 34960-34964 VBD denotes were
T15033 34969-34973 IN denotes onto
T15034 34974-34976 DT denotes an
T15035 34985-34988 NN denotes gel
T15036 34977-34984 NN denotes agarose
T15037 34988-34990 , denotes ,
T15038 34990-34995 WDT denotes which
T15039 34996-35004 VBD denotes revealed
T15040 35005-35008 DT denotes the
T15041 35009-35017 NN denotes presence
T15042 35018-35020 IN denotes of
T15043 35021-35024 DT denotes the
T15044 35069-35076 NNS denotes alleles
T15045 35025-35029 JJ denotes wild
T15046 35030-35034 NN denotes type
T15047 35029-35030 HYPH denotes -
T15048 35035-35036 -LRB- denotes (
T15049 35040-35042 NN denotes bp
T15050 35036-35039 CD denotes 150
T15051 35042-35043 -RRB- denotes )
T15052 35044-35047 CC denotes and
T15053 35048-35059 NN denotes recombinant
T15054 35060-35061 -LRB- denotes (
T15055 35065-35067 NN denotes bp
T15056 35061-35064 CD denotes 200
T15057 35067-35068 -RRB- denotes )
T15058 35076-35077 . denotes .
T15693 35079-35086 NN denotes P150CAF
T15694 35089-35098 NN denotes depletion
T15695 35086-35087 HYPH denotes -
T15696 35087-35088 CD denotes 1
T15697 35099-35101 IN denotes by
T15698 35102-35106 NN denotes RNAi
T15699 35106-35107 . denotes .
T15700 35107-35251 sentence denotes The RNAi plasmid vector that we used in this study contains the mouse H1 promoter and a puromycin selection gene (SB and MG, unpublished data).
T15701 35108-35111 DT denotes The
T15702 35125-35131 NN denotes vector
T15703 35112-35116 NN denotes RNAi
T15704 35117-35124 NN denotes plasmid
T15705 35159-35167 VBZ denotes contains
T15706 35132-35136 WDT denotes that
T15707 35140-35144 VBD denotes used
T15708 35137-35139 PRP denotes we
T15709 35145-35147 IN denotes in
T15710 35148-35152 DT denotes this
T15711 35153-35158 NN denotes study
T15712 35168-35171 DT denotes the
T15713 35181-35189 NN denotes promoter
T15714 35172-35177 NN denotes mouse
T15715 35178-35180 NN denotes H1
T15716 35190-35193 CC denotes and
T15717 35194-35195 DT denotes a
T15718 35216-35220 NN denotes gene
T15719 35196-35205 NN denotes puromycin
T15720 35206-35215 NN denotes selection
T15721 35221-35222 -LRB- denotes (
T15722 35245-35249 NNS denotes data
T15723 35222-35224 NN denotes SB
T15724 35225-35228 CC denotes and
T15725 35229-35231 NN denotes MG
T15726 35231-35233 , denotes ,
T15727 35233-35244 JJ denotes unpublished
T15728 35249-35250 -RRB- denotes )
T15729 35250-35251 . denotes .
T15730 35251-35517 sentence denotes We characterized in detail the properties of this new vector using a GFP target gene and FACS: Extinction of target genes in ES cells is highly efficient in 70% of the cells, of intermediate efficiency in 15%, and inefficient in the remaining 15% of cells analysis.
T15731 35252-35254 PRP denotes We
T15732 35255-35268 VBD denotes characterized
T15733 35386-35388 VBZ denotes is
T15734 35269-35271 IN denotes in
T15735 35272-35278 NN denotes detail
T15736 35279-35282 DT denotes the
T15737 35283-35293 NNS denotes properties
T15738 35294-35296 IN denotes of
T15739 35297-35301 DT denotes this
T15740 35306-35312 NN denotes vector
T15741 35302-35305 JJ denotes new
T15742 35313-35318 VBG denotes using
T15743 35319-35320 DT denotes a
T15744 35332-35336 NN denotes gene
T15745 35321-35324 NN denotes GFP
T15746 35325-35331 NN denotes target
T15747 35337-35340 CC denotes and
T15748 35341-35345 NN denotes FACS
T15749 35345-35347 : denotes :
T15750 35347-35357 NN denotes Extinction
T15751 35358-35360 IN denotes of
T15752 35361-35367 NN denotes target
T15753 35368-35373 NNS denotes genes
T15754 35374-35376 IN denotes in
T15755 35377-35379 NN denotes ES
T15756 35380-35385 NNS denotes cells
T15757 35389-35395 RB denotes highly
T15758 35396-35405 JJ denotes efficient
T15759 35406-35408 IN denotes in
T15760 35409-35411 CD denotes 70
T15761 35411-35412 NN denotes %
T15762 35413-35415 IN denotes of
T15763 35416-35419 DT denotes the
T15764 35420-35425 NNS denotes cells
T15765 35425-35427 , denotes ,
T15766 35427-35429 IN denotes of
T15767 35430-35442 JJ denotes intermediate
T15768 35443-35453 NN denotes efficiency
T15769 35454-35456 IN denotes in
T15770 35457-35459 CD denotes 15
T15771 35459-35460 NN denotes %
T15772 35460-35462 , denotes ,
T15773 35462-35465 CC denotes and
T15774 35466-35477 JJ denotes inefficient
T15775 35478-35480 IN denotes in
T15776 35481-35484 DT denotes the
T15777 35497-35498 NN denotes %
T15778 35485-35494 VBG denotes remaining
T15779 35495-35497 CD denotes 15
T15780 35499-35501 IN denotes of
T15781 35502-35507 NNS denotes cells
T15782 35508-35516 NN denotes analysis
T15783 35516-35517 . denotes .
T15784 35517-35615 sentence denotes The sequence of p150CAF-1 siRNA (short interfering RNA) duplex [16] was cloned into this plasmid.
T15785 35518-35521 DT denotes The
T15786 35522-35530 NN denotes sequence
T15787 35590-35596 VBN denotes cloned
T15788 35531-35533 IN denotes of
T15789 35534-35541 NN denotes p150CAF
T15790 35574-35580 NN denotes duplex
T15791 35541-35542 HYPH denotes -
T15792 35542-35543 CD denotes 1
T15793 35544-35549 NN denotes siRNA
T15794 35550-35551 -LRB- denotes (
T15795 35551-35556 JJ denotes short
T15796 35569-35572 NN denotes RNA
T15797 35557-35568 VBG denotes interfering
T15798 35572-35573 -RRB- denotes )
T15799 35581-35582 -LRB- denotes [
T15800 35582-35584 CD denotes 16
T15801 35584-35585 -RRB- denotes ]
T15802 35586-35589 VBD denotes was
T15803 35597-35601 IN denotes into
T15804 35602-35606 DT denotes this
T15805 35607-35614 NN denotes plasmid
T15806 35614-35615 . denotes .
T15807 35615-35686 sentence denotes The control vector expressed a siRNA that targets GFP RNA degradation.
T15808 35616-35619 DT denotes The
T15809 35628-35634 NN denotes vector
T15810 35620-35627 NN denotes control
T15811 35635-35644 VBD denotes expressed
T15812 35645-35646 DT denotes a
T15813 35647-35652 NN denotes siRNA
T15814 35653-35657 WDT denotes that
T15815 35658-35665 VBZ denotes targets
T15816 35666-35669 NN denotes GFP
T15817 35674-35685 NN denotes degradation
T15818 35670-35673 NN denotes RNA
T15819 35685-35686 . denotes .
T15820 35686-35846 sentence denotes ES cells were transfected by electroporation with the RNA plasmid vector, seeded onto gelatin-coated slides, and cultured for 24 h in the absence of selection.
T15821 35687-35689 NN denotes ES
T15822 35690-35695 NNS denotes cells
T15823 35701-35712 VBN denotes transfected
T15824 35696-35700 VBD denotes were
T15825 35713-35715 IN denotes by
T15826 35716-35731 NN denotes electroporation
T15827 35732-35736 IN denotes with
T15828 35737-35740 DT denotes the
T15829 35753-35759 NN denotes vector
T15830 35741-35744 NN denotes RNA
T15831 35745-35752 NN denotes plasmid
T15832 35759-35761 , denotes ,
T15833 35761-35767 VBN denotes seeded
T15834 35768-35772 IN denotes onto
T15835 35773-35780 NN denotes gelatin
T15836 35781-35787 VBN denotes coated
T15837 35780-35781 HYPH denotes -
T15838 35788-35794 NNS denotes slides
T15839 35794-35796 , denotes ,
T15840 35796-35799 CC denotes and
T15841 35800-35808 VBN denotes cultured
T15842 35809-35812 IN denotes for
T15843 35813-35815 CD denotes 24
T15844 35816-35817 NN denotes h
T15845 35818-35820 IN denotes in
T15846 35821-35824 DT denotes the
T15847 35825-35832 NN denotes absence
T15848 35833-35835 IN denotes of
T15849 35836-35845 NN denotes selection
T15850 35845-35846 . denotes .
T15851 35846-35953 sentence denotes Puromycin (2 μg/ml) was added to the culture medium and cells were cultured for an additional 48-h period.
T15852 35847-35856 NN denotes Puromycin
T15853 35871-35876 VBN denotes added
T15854 35857-35858 -LRB- denotes (
T15855 35860-35862 NN denotes μg
T15856 35858-35859 CD denotes 2
T15857 35862-35863 SYM denotes /
T15858 35863-35865 NN denotes ml
T15859 35865-35866 -RRB- denotes )
T15860 35867-35870 VBD denotes was
T15861 35877-35879 IN denotes to
T15862 35880-35883 DT denotes the
T15863 35892-35898 NN denotes medium
T15864 35884-35891 NN denotes culture
T15865 35899-35902 CC denotes and
T15866 35903-35908 NNS denotes cells
T15867 35914-35922 VBN denotes cultured
T15868 35909-35913 VBD denotes were
T15869 35923-35926 IN denotes for
T15870 35927-35929 DT denotes an
T15871 35946-35952 NN denotes period
T15872 35930-35940 JJ denotes additional
T15873 35941-35943 CD denotes 48
T15874 35944-35945 NN denotes h
T15875 35943-35944 HYPH denotes -
T15876 35952-35953 . denotes .
T15877 35953-36078 sentence denotes Using the p150CAF-1 RNAi vector, IF microscopy quantification reveals a complete CAF-1 depletion in most cells (Figure S1B).
T15878 35954-35959 VBG denotes Using
T15879 36016-36023 VBZ denotes reveals
T15880 35960-35963 DT denotes the
T15881 35979-35985 NN denotes vector
T15882 35964-35971 NN denotes p150CAF
T15883 35971-35972 HYPH denotes -
T15884 35972-35973 CD denotes 1
T15885 35974-35978 NN denotes RNAi
T15886 35985-35987 , denotes ,
T15887 35987-35989 NN denotes IF
T15888 35990-36000 NN denotes microscopy
T15889 36001-36015 NN denotes quantification
T15890 36024-36025 DT denotes a
T15891 36041-36050 NN denotes depletion
T15892 36026-36034 JJ denotes complete
T15893 36035-36038 NN denotes CAF
T15894 36038-36039 HYPH denotes -
T15895 36039-36040 CD denotes 1
T15896 36051-36053 IN denotes in
T15897 36054-36058 JJS denotes most
T15898 36059-36064 NNS denotes cells
T15899 36065-36066 -LRB- denotes (
T15900 36073-36076 NN denotes S1B
T15901 36066-36072 NN denotes Figure
T15902 36076-36077 -RRB- denotes )
T15903 36077-36078 . denotes .
T15904 36078-36223 sentence denotes Western blot analysis (Figure S1A) reveals residual p150CAF-1 expression, as expected from the 15% of cells that do not inhibit the target gene.
T15905 36079-36086 NNP denotes Western
T15906 36087-36091 NN denotes blot
T15907 36092-36100 NN denotes analysis
T15908 36114-36121 VBZ denotes reveals
T15909 36101-36102 -LRB- denotes (
T15910 36109-36112 NN denotes S1A
T15911 36102-36108 NN denotes Figure
T15912 36112-36113 -RRB- denotes )
T15913 36122-36130 JJ denotes residual
T15914 36141-36151 NN denotes expression
T15915 36131-36138 NN denotes p150CAF
T15916 36138-36139 HYPH denotes -
T15917 36139-36140 CD denotes 1
T15918 36151-36153 , denotes ,
T15919 36153-36155 IN denotes as
T15920 36156-36164 VBN denotes expected
T15921 36165-36169 IN denotes from
T15922 36170-36173 DT denotes the
T15923 36176-36177 NN denotes %
T15924 36174-36176 CD denotes 15
T15925 36178-36180 IN denotes of
T15926 36181-36186 NNS denotes cells
T15927 36187-36191 WDT denotes that
T15928 36199-36206 VB denotes inhibit
T15929 36192-36194 VBP denotes do
T15930 36195-36198 RB denotes not
T15931 36207-36210 DT denotes the
T15932 36218-36222 NN denotes gene
T15933 36211-36217 NN denotes target
T15934 36222-36223 . denotes .
T15935 36223-36429 sentence denotes MEFs (passage 3, 90% confluence) were transfected during 4 h with the RNAi plasmid vector using Lipofectamine 2000 (Invitrogene, Carlsbad, California, United States) according to manufacturer's conditions.
T15936 36224-36228 NNS denotes MEFs
T15937 36262-36273 VBN denotes transfected
T15938 36229-36230 -LRB- denotes (
T15939 36230-36237 NN denotes passage
T15940 36238-36239 CD denotes 3
T15941 36239-36241 , denotes ,
T15942 36241-36243 CD denotes 90
T15943 36243-36244 NN denotes %
T15944 36245-36255 NN denotes confluence
T15945 36255-36256 -RRB- denotes )
T15946 36257-36261 VBD denotes were
T15947 36274-36280 IN denotes during
T15948 36281-36282 CD denotes 4
T15949 36283-36284 NN denotes h
T15950 36285-36289 IN denotes with
T15951 36290-36293 DT denotes the
T15952 36307-36313 NN denotes vector
T15953 36294-36298 NN denotes RNAi
T15954 36299-36306 NN denotes plasmid
T15955 36314-36319 VBG denotes using
T15956 36320-36333 NNP denotes Lipofectamine
T15957 36334-36338 CD denotes 2000
T15958 36339-36340 -LRB- denotes (
T15959 36340-36351 NNP denotes Invitrogene
T15960 36351-36353 , denotes ,
T15961 36353-36361 NNP denotes Carlsbad
T15962 36361-36363 , denotes ,
T15963 36363-36373 NNP denotes California
T15964 36373-36375 , denotes ,
T15965 36375-36381 NNP denotes United
T15966 36382-36388 NNP denotes States
T15967 36388-36389 -RRB- denotes )
T15968 36390-36399 VBG denotes according
T15969 36400-36402 IN denotes to
T15970 36403-36415 NN denotes manufacturer
T15971 36418-36428 NNS denotes conditions
T15972 36415-36417 POS denotes 's
T15973 36428-36429 . denotes .
T15974 36429-36529 sentence denotes Cells were trypsinized, plated at 1/3 dilution, and cultured for 48 h in the presence of puromycin.
T15975 36430-36435 NNS denotes Cells
T15976 36441-36452 VBN denotes trypsinized
T15977 36436-36440 VBD denotes were
T15978 36452-36454 , denotes ,
T15979 36454-36460 VBN denotes plated
T15980 36461-36463 IN denotes at
T15981 36464-36465 CD denotes 1
T15982 36466-36467 CD denotes 3
T15983 36465-36466 SYM denotes /
T15984 36468-36476 NN denotes dilution
T15985 36476-36478 , denotes ,
T15986 36478-36481 CC denotes and
T15987 36482-36490 VBN denotes cultured
T15988 36491-36494 IN denotes for
T15989 36495-36497 CD denotes 48
T15990 36498-36499 NN denotes h
T15991 36500-36502 IN denotes in
T15992 36503-36506 DT denotes the
T15993 36507-36515 NN denotes presence
T15994 36516-36518 IN denotes of
T15995 36519-36528 NN denotes puromycin
T15996 36528-36529 . denotes .
T16173 36531-36535 NN denotes Cell
T16174 36536-36541 NNS denotes lines
T16175 36541-36542 . denotes .
T16176 36542-36613 sentence denotes AT-1 ES cells [42] (a gift of M. Vernet) were used for gene targeting.
T16177 36543-36545 NN denotes AT
T16178 36551-36556 NNS denotes cells
T16179 36545-36546 HYPH denotes -
T16180 36546-36547 CD denotes 1
T16181 36548-36550 NN denotes ES
T16182 36589-36593 VBN denotes used
T16183 36557-36558 -LRB- denotes [
T16184 36558-36560 CD denotes 42
T16185 36560-36561 -RRB- denotes ]
T16186 36562-36563 -LRB- denotes (
T16187 36565-36569 NN denotes gift
T16188 36563-36564 DT denotes a
T16189 36570-36572 IN denotes of
T16190 36573-36575 NNP denotes M.
T16191 36576-36582 NNP denotes Vernet
T16192 36582-36583 -RRB- denotes )
T16193 36584-36588 VBD denotes were
T16194 36594-36597 IN denotes for
T16195 36598-36602 NN denotes gene
T16196 36603-36612 NN denotes targeting
T16197 36612-36613 . denotes .
T16198 36613-36662 sentence denotes LTM7 ES cells were used in all RNAi experiments.
T16199 36614-36618 NN denotes LTM7
T16200 36622-36627 NNS denotes cells
T16201 36619-36621 NN denotes ES
T16202 36633-36637 VBN denotes used
T16203 36628-36632 VBD denotes were
T16204 36638-36640 IN denotes in
T16205 36641-36644 DT denotes all
T16206 36650-36661 NNS denotes experiments
T16207 36645-36649 NN denotes RNAi
T16208 36661-36662 . denotes .
T16209 36662-36745 sentence denotes We derived this cell line from (C57BL/6 × 129) F1 females bred with C3H/HeJ males.
T16210 36663-36665 PRP denotes We
T16211 36666-36673 VBD denotes derived
T16212 36674-36678 DT denotes this
T16213 36684-36688 NN denotes line
T16214 36679-36683 NN denotes cell
T16215 36689-36693 IN denotes from
T16216 36694-36695 -LRB- denotes (
T16217 36695-36700 NN denotes C57BL
T16218 36713-36720 NNS denotes females
T16219 36700-36701 HYPH denotes /
T16220 36701-36702 CD denotes 6
T16221 36703-36704 SYM denotes ×
T16222 36705-36708 CD denotes 129
T16223 36708-36709 -RRB- denotes )
T16224 36710-36712 NN denotes F1
T16225 36721-36725 VBN denotes bred
T16226 36726-36730 IN denotes with
T16227 36731-36734 NN denotes C3H
T16228 36735-36738 NN denotes HeJ
T16229 36734-36735 HYPH denotes /
T16230 36739-36744 NNS denotes males
T16231 36744-36745 . denotes .
T16232 36745-36805 sentence denotes LTM7 are XX ES cells, competent for germ line transmission.
T16233 36746-36750 NN denotes LTM7
T16234 36751-36754 VBP denotes are
T16235 36755-36757 NN denotes XX
T16236 36761-36766 NNS denotes cells
T16237 36758-36760 NN denotes ES
T16238 36766-36768 , denotes ,
T16239 36768-36777 JJ denotes competent
T16240 36778-36781 IN denotes for
T16241 36782-36786 NN denotes germ
T16242 36787-36791 NN denotes line
T16243 36792-36804 NN denotes transmission
T16244 36804-36805 . denotes .
T16245 36805-36870 sentence denotes Primary MEFs were derived from E13 embryos as described in [43].
T16246 36806-36813 JJ denotes Primary
T16247 36814-36818 NNS denotes MEFs
T16248 36824-36831 VBN denotes derived
T16249 36819-36823 VBD denotes were
T16250 36832-36836 IN denotes from
T16251 36837-36840 NN denotes E13
T16252 36841-36848 NNS denotes embryos
T16253 36849-36851 IN denotes as
T16254 36852-36861 VBN denotes described
T16255 36862-36864 IN denotes in
T16256 36865-36866 -LRB- denotes [
T16257 36866-36868 CD denotes 43
T16258 36868-36869 -RRB- denotes ]
T16259 36869-36870 . denotes .
T16587 36872-36890 NN denotes Immunofluorescence
T16588 36890-36891 . denotes .
T16589 36891-37016 sentence denotes Cells were fixed for 20 min in PBS with 4% paraformaldehyde, and immunodetection was performed as previously described [44].
T16590 36892-36897 NNS denotes Cells
T16591 36903-36908 VBN denotes fixed
T16592 36898-36902 VBD denotes were
T16593 36909-36912 IN denotes for
T16594 36913-36915 CD denotes 20
T16595 36916-36919 NN denotes min
T16596 36920-36922 IN denotes in
T16597 36923-36926 NN denotes PBS
T16598 36927-36931 IN denotes with
T16599 36932-36933 CD denotes 4
T16600 36933-36934 NN denotes %
T16601 36935-36951 NN denotes paraformaldehyde
T16602 36951-36953 , denotes ,
T16603 36953-36956 CC denotes and
T16604 36957-36972 NN denotes immunodetection
T16605 36977-36986 VBN denotes performed
T16606 36973-36976 VBD denotes was
T16607 36987-36989 IN denotes as
T16608 37001-37010 VBN denotes described
T16609 36990-37000 RB denotes previously
T16610 37011-37012 -LRB- denotes [
T16611 37012-37014 CD denotes 44
T16612 37014-37015 -RRB- denotes ]
T16613 37015-37016 . denotes .
T16614 37016-37195 sentence denotes E4 embryos were collected and treated with tyrode acid to remove the zona pellucida, deposited onto microscope slides, and processed for immunostaining as described for ES cells.
T16615 37017-37019 NN denotes E4
T16616 37020-37027 NNS denotes embryos
T16617 37033-37042 VBN denotes collected
T16618 37028-37032 VBD denotes were
T16619 37043-37046 CC denotes and
T16620 37047-37054 VBN denotes treated
T16621 37055-37059 IN denotes with
T16622 37060-37066 NN denotes tyrode
T16623 37067-37071 NN denotes acid
T16624 37072-37074 TO denotes to
T16625 37075-37081 VB denotes remove
T16626 37082-37085 DT denotes the
T16627 37091-37100 NN denotes pellucida
T16628 37086-37090 NN denotes zona
T16629 37100-37102 , denotes ,
T16630 37102-37111 VBN denotes deposited
T16631 37112-37116 IN denotes onto
T16632 37117-37127 NN denotes microscope
T16633 37128-37134 NNS denotes slides
T16634 37134-37136 , denotes ,
T16635 37136-37139 CC denotes and
T16636 37140-37149 VBN denotes processed
T16637 37150-37153 IN denotes for
T16638 37154-37168 NN denotes immunostaining
T16639 37169-37171 IN denotes as
T16640 37172-37181 VBN denotes described
T16641 37182-37185 IN denotes for
T16642 37186-37188 NN denotes ES
T16643 37189-37194 NNS denotes cells
T16644 37194-37195 . denotes .
T16645 37195-37479 sentence denotes Antibodies anti-HP1α (2HP1H5, Euromedex, France), anti-H4K20me3 (Abcam, Cambridge, United Kingdom), anti-BrdU (DakoCytomation, Glostrup, Denmark), anti-PCNA (DakoCytomation), and anti-PML (Upstate Biotechnology, Lake Placid, New York, United States) were all used at 1/1000 dilution.
T16646 37196-37206 NNS denotes Antibodies
T16647 37455-37459 VBN denotes used
T16648 37207-37216 JJ denotes anti-HP1α
T16649 37217-37218 -LRB- denotes (
T16650 37218-37224 NN denotes 2HP1H5
T16651 37224-37226 , denotes ,
T16652 37226-37235 NNP denotes Euromedex
T16653 37235-37237 , denotes ,
T16654 37237-37243 NNP denotes France
T16655 37243-37244 -RRB- denotes )
T16656 37244-37246 , denotes ,
T16657 37246-37259 JJ denotes anti-H4K20me3
T16658 37260-37261 -LRB- denotes (
T16659 37261-37266 NNP denotes Abcam
T16660 37266-37268 , denotes ,
T16661 37268-37277 NNP denotes Cambridge
T16662 37277-37279 , denotes ,
T16663 37279-37285 NNP denotes United
T16664 37286-37293 NNP denotes Kingdom
T16665 37293-37294 -RRB- denotes )
T16666 37294-37296 , denotes ,
T16667 37296-37305 JJ denotes anti-BrdU
T16668 37306-37307 -LRB- denotes (
T16669 37307-37321 NNP denotes DakoCytomation
T16670 37321-37323 , denotes ,
T16671 37323-37331 NNP denotes Glostrup
T16672 37331-37333 , denotes ,
T16673 37333-37340 NNP denotes Denmark
T16674 37340-37341 -RRB- denotes )
T16675 37341-37343 , denotes ,
T16676 37343-37352 JJ denotes anti-PCNA
T16677 37353-37354 -LRB- denotes (
T16678 37354-37368 NNP denotes DakoCytomation
T16679 37368-37369 -RRB- denotes )
T16680 37369-37371 , denotes ,
T16681 37371-37374 CC denotes and
T16682 37375-37383 JJ denotes anti-PML
T16683 37384-37385 -LRB- denotes (
T16684 37393-37406 NNP denotes Biotechnology
T16685 37385-37392 NNP denotes Upstate
T16686 37406-37408 , denotes ,
T16687 37408-37412 NNP denotes Lake
T16688 37413-37419 NNP denotes Placid
T16689 37419-37421 , denotes ,
T16690 37421-37424 NNP denotes New
T16691 37425-37429 NNP denotes York
T16692 37429-37431 , denotes ,
T16693 37431-37437 NNP denotes United
T16694 37438-37444 NNP denotes States
T16695 37444-37445 -RRB- denotes )
T16696 37446-37450 VBD denotes were
T16697 37451-37454 RB denotes all
T16698 37460-37462 IN denotes at
T16699 37463-37464 CD denotes 1
T16700 37470-37478 NN denotes dilution
T16701 37464-37465 SYM denotes /
T16702 37465-37469 CD denotes 1000
T16703 37478-37479 . denotes .
T16704 37479-37600 sentence denotes Antibodies anti-mouse p150CAF1 [16] and anti-H3K9me3 (Upstate Biotechnology) were used at 1/250 and 1/500, respectively.
T16705 37480-37490 NNS denotes Antibodies
T16706 37502-37510 NN denotes p150CAF1
T16707 37491-37501 JJ denotes anti-mouse
T16708 37562-37566 VBN denotes used
T16709 37511-37512 -LRB- denotes [
T16710 37512-37514 CD denotes 16
T16711 37514-37515 -RRB- denotes ]
T16712 37516-37519 CC denotes and
T16713 37520-37532 NN denotes anti-H3K9me3
T16714 37533-37534 -LRB- denotes (
T16715 37542-37555 NNP denotes Biotechnology
T16716 37534-37541 NNP denotes Upstate
T16717 37555-37556 -RRB- denotes )
T16718 37557-37561 VBD denotes were
T16719 37567-37569 IN denotes at
T16720 37570-37571 CD denotes 1
T16721 37571-37572 SYM denotes /
T16722 37572-37575 CD denotes 250
T16723 37576-37579 CC denotes and
T16724 37580-37581 CD denotes 1
T16725 37581-37582 SYM denotes /
T16726 37582-37585 CD denotes 500
T16727 37585-37587 , denotes ,
T16728 37587-37599 RB denotes respectively
T16729 37599-37600 . denotes .
T16730 37600-37702 sentence denotes All secondary antibodies were purchased from Molecular Probes (Sunnyvale, California, United States).
T16731 37601-37604 DT denotes All
T16732 37615-37625 NNS denotes antibodies
T16733 37605-37614 JJ denotes secondary
T16734 37631-37640 VBN denotes purchased
T16735 37626-37630 VBD denotes were
T16736 37641-37645 IN denotes from
T16737 37646-37655 NNP denotes Molecular
T16738 37656-37662 NNP denotes Probes
T16739 37663-37664 -LRB- denotes (
T16740 37664-37673 NNP denotes Sunnyvale
T16741 37673-37675 , denotes ,
T16742 37675-37685 NNP denotes California
T16743 37685-37687 , denotes ,
T16744 37687-37693 NNP denotes United
T16745 37694-37700 NNP denotes States
T16746 37700-37701 -RRB- denotes )
T16747 37701-37702 . denotes .
T16924 37704-37711 NNP denotes Western
T16925 37712-37716 NN denotes blot
T16926 37717-37725 NN denotes analysis
T16927 37725-37726 . denotes .
T16928 37726-37805 sentence denotes Cells were lysed in Laemli buffer and run onto a 4%–12% SDS PAGE gradient gel.
T16929 37727-37732 NNS denotes Cells
T16930 37738-37743 VBN denotes lysed
T16931 37733-37737 VBD denotes were
T16932 37744-37746 IN denotes in
T16933 37747-37753 NNP denotes Laemli
T16934 37754-37760 NN denotes buffer
T16935 37761-37764 CC denotes and
T16936 37765-37768 VBP denotes run
T16937 37769-37773 IN denotes onto
T16938 37774-37775 DT denotes a
T16939 37801-37804 NN denotes gel
T16940 37776-37777 CD denotes 4
T16941 37777-37778 NN denotes %
T16942 37778-37779 SYM denotes
T16943 37781-37782 NN denotes %
T16944 37779-37781 CD denotes 12
T16945 37783-37786 NN denotes SDS
T16946 37787-37791 NN denotes PAGE
T16947 37792-37800 NN denotes gradient
T16948 37804-37805 . denotes .
T16949 37805-37981 sentence denotes We used antibodies against p150CAF-1 ([16]; dilution 1/500), HP1α (2G9, Euromedex; 1/500), Histone H3 (Abcam; 1/500), H3K9me3 (Upstate; 1/500) and β-actin (Upstate; 1/40 000).
T16950 37806-37808 PRP denotes We
T16951 37809-37813 VBD denotes used
T16952 37814-37824 NNS denotes antibodies
T16953 37825-37832 IN denotes against
T16954 37833-37840 NN denotes p150CAF
T16955 37840-37841 HYPH denotes -
T16956 37841-37842 CD denotes 1
T16957 37843-37844 -LRB- denotes (
T16958 37850-37858 NN denotes dilution
T16959 37844-37845 -LRB- denotes [
T16960 37845-37847 CD denotes 16
T16961 37847-37848 -RRB- denotes ]
T16962 37848-37849 : denotes ;
T16963 37859-37860 CD denotes 1
T16964 37860-37861 SYM denotes /
T16965 37861-37864 CD denotes 500
T16966 37864-37865 -RRB- denotes )
T16967 37865-37867 , denotes ,
T16968 37867-37871 NN denotes HP1α
T16969 37872-37873 -LRB- denotes (
T16970 37889-37890 CD denotes 1
T16971 37873-37876 NN denotes 2G9
T16972 37876-37878 , denotes ,
T16973 37878-37887 NNP denotes Euromedex
T16974 37887-37888 : denotes ;
T16975 37890-37891 SYM denotes /
T16976 37891-37894 CD denotes 500
T16977 37894-37895 -RRB- denotes )
T16978 37895-37897 , denotes ,
T16979 37897-37904 NN denotes Histone
T16980 37905-37907 NN denotes H3
T16981 37908-37909 -LRB- denotes (
T16982 37916-37917 CD denotes 1
T16983 37909-37914 NN denotes Abcam
T16984 37914-37915 : denotes ;
T16985 37917-37918 SYM denotes /
T16986 37918-37921 CD denotes 500
T16987 37921-37922 -RRB- denotes )
T16988 37922-37924 , denotes ,
T16989 37924-37931 NN denotes H3K9me3
T16990 37932-37933 -LRB- denotes (
T16991 37942-37943 CD denotes 1
T16992 37933-37940 NNP denotes Upstate
T16993 37940-37941 : denotes ;
T16994 37943-37944 SYM denotes /
T16995 37944-37947 CD denotes 500
T16996 37947-37948 -RRB- denotes )
T16997 37949-37952 CC denotes and
T16998 37953-37954 NN denotes β
T16999 37955-37960 NN denotes actin
T17000 37954-37955 HYPH denotes -
T17001 37961-37962 -LRB- denotes (
T17002 37971-37972 CD denotes 1
T17003 37962-37969 NNP denotes Upstate
T17004 37969-37970 : denotes ;
T17005 37972-37973 SYM denotes /
T17006 37976-37979 CD denotes 000
T17007 37973-37975 CD denotes 40
T17008 37979-37980 -RRB- denotes )
T17009 37980-37981 . denotes .
T17171 37983-37986 NN denotes DNA
T17172 37987-37991 NN denotes FISH
T17173 37991-37992 . denotes .
T17174 37992-38031 sentence denotes Probes were described previously [20].
T17175 37993-37999 NNS denotes Probes
T17176 38005-38014 VBN denotes described
T17177 38000-38004 VBD denotes were
T17178 38015-38025 RB denotes previously
T17179 38026-38027 -LRB- denotes [
T17180 38027-38029 CD denotes 20
T17181 38029-38030 -RRB- denotes ]
T17182 38030-38031 . denotes .
T17183 38031-38193 sentence denotes Biotin-16-dUTP or Digoxigenin-11-dUTP (Roche, Basel, Switzerland) labeled probes were generated by nick translation (Roche) and FISH performed as described [20].
T17184 38032-38038 NN denotes Biotin
T17185 38042-38046 NN denotes dUTP
T17186 38038-38039 HYPH denotes -
T17187 38039-38041 CD denotes 16
T17188 38041-38042 HYPH denotes -
T17189 38098-38105 VBN denotes labeled
T17190 38047-38049 CC denotes or
T17191 38050-38061 NN denotes Digoxigenin
T17192 38065-38069 NN denotes dUTP
T17193 38061-38062 HYPH denotes -
T17194 38062-38064 CD denotes 11
T17195 38064-38065 HYPH denotes -
T17196 38070-38071 -LRB- denotes (
T17197 38071-38076 NNP denotes Roche
T17198 38076-38078 , denotes ,
T17199 38078-38083 NNP denotes Basel
T17200 38083-38085 , denotes ,
T17201 38085-38096 NNP denotes Switzerland
T17202 38096-38097 -RRB- denotes )
T17203 38106-38112 NNS denotes probes
T17204 38118-38127 VBN denotes generated
T17205 38113-38117 VBD denotes were
T17206 38128-38130 IN denotes by
T17207 38131-38135 NN denotes nick
T17208 38136-38147 NN denotes translation
T17209 38148-38149 -LRB- denotes (
T17210 38149-38154 NNP denotes Roche
T17211 38154-38155 -RRB- denotes )
T17212 38156-38159 CC denotes and
T17213 38160-38164 NN denotes FISH
T17214 38165-38174 VBN denotes performed
T17215 38175-38177 IN denotes as
T17216 38178-38187 VBN denotes described
T17217 38188-38189 -LRB- denotes [
T17218 38189-38191 CD denotes 20
T17219 38191-38192 -RRB- denotes ]
T17220 38192-38193 . denotes .
T17221 38193-38387 sentence denotes Image acquisition was performed with the Deltavision RT microscope (100×, 1.4 NA objective), images were deconvoluted, and fluorescence profiles measured along an arbitrary line using SoftWorx.
T17222 38194-38199 NN denotes Image
T17223 38200-38211 NN denotes acquisition
T17224 38216-38225 VBN denotes performed
T17225 38212-38215 VBD denotes was
T17226 38226-38230 IN denotes with
T17227 38231-38234 DT denotes the
T17228 38250-38260 NN denotes microscope
T17229 38235-38246 NNP denotes Deltavision
T17230 38247-38249 NN denotes RT
T17231 38261-38262 -LRB- denotes (
T17232 38275-38284 NN denotes objective
T17233 38262-38265 CD denotes 100
T17234 38265-38266 SYM denotes ×
T17235 38266-38268 , denotes ,
T17236 38268-38271 CD denotes 1.4
T17237 38272-38274 NN denotes NA
T17238 38284-38285 -RRB- denotes )
T17239 38285-38287 , denotes ,
T17240 38287-38293 NNS denotes images
T17241 38299-38311 VBN denotes deconvoluted
T17242 38294-38298 VBD denotes were
T17243 38311-38313 , denotes ,
T17244 38313-38316 CC denotes and
T17245 38317-38329 NN denotes fluorescence
T17246 38330-38338 NNS denotes profiles
T17247 38339-38347 VBN denotes measured
T17248 38348-38353 IN denotes along
T17249 38354-38356 DT denotes an
T17250 38367-38371 NN denotes line
T17251 38357-38366 JJ denotes arbitrary
T17252 38372-38377 VBG denotes using
T17253 38378-38386 NNP denotes SoftWorx
T17254 38386-38387 . denotes .
T17929 38389-38395 NNS denotes Nuclei
T17930 38396-38407 NN denotes preparation
T17931 38407-38409 , denotes ,
T17932 38409-38417 NN denotes nuclease
T17933 38418-38427 NN denotes digestion
T17934 38427-38429 , denotes ,
T17935 38429-38432 CC denotes and
T17936 38433-38444 JJ denotes biochemical
T17937 38445-38453 NN denotes analysis
T17938 38454-38456 IN denotes of
T17939 38457-38466 NN denotes chromatin
T17940 38466-38467 . denotes .
T17941 38467-38673 sentence denotes ES cells were incubated on ice for 10 min in buffer 1 (15 mM Tris-HCl [pH 7.5], 0.3 M sucrose, 60 mM KCl, 15 mM NaCl, 5 mM MgCl2, 0.1 mM EGTA) with 0.15% IGEPAL (Sigma, St. Louis, Missouri, United States).
T17942 38468-38470 NN denotes ES
T17943 38471-38476 NNS denotes cells
T17944 38482-38491 VBN denotes incubated
T17945 38477-38481 VBD denotes were
T17946 38492-38494 IN denotes on
T17947 38495-38498 NN denotes ice
T17948 38499-38502 IN denotes for
T17949 38503-38505 CD denotes 10
T17950 38506-38509 NN denotes min
T17951 38510-38512 IN denotes in
T17952 38513-38519 NN denotes buffer
T17953 38520-38521 CD denotes 1
T17954 38522-38523 -LRB- denotes (
T17955 38534-38537 NN denotes HCl
T17956 38523-38525 CD denotes 15
T17957 38526-38528 NN denotes mM
T17958 38529-38533 NN denotes Tris
T17959 38533-38534 HYPH denotes -
T17960 38538-38539 -LRB- denotes [
T17961 38539-38541 NN denotes pH
T17962 38542-38545 CD denotes 7.5
T17963 38545-38546 -RRB- denotes ]
T17964 38546-38548 , denotes ,
T17965 38548-38551 CD denotes 0.3
T17966 38552-38553 NN denotes M
T17967 38554-38561 NN denotes sucrose
T17968 38561-38563 , denotes ,
T17969 38563-38565 CD denotes 60
T17970 38566-38568 NN denotes mM
T17971 38569-38572 NN denotes KCl
T17972 38572-38574 , denotes ,
T17973 38574-38576 CD denotes 15
T17974 38577-38579 NN denotes mM
T17975 38580-38584 NN denotes NaCl
T17976 38584-38586 , denotes ,
T17977 38586-38587 CD denotes 5
T17978 38588-38590 NN denotes mM
T17979 38591-38596 NN denotes MgCl2
T17980 38596-38598 , denotes ,
T17981 38598-38601 CD denotes 0.1
T17982 38602-38604 NN denotes mM
T17983 38605-38609 NN denotes EGTA
T17984 38609-38610 -RRB- denotes )
T17985 38611-38615 IN denotes with
T17986 38616-38620 CD denotes 0.15
T17987 38620-38621 NN denotes %
T17988 38622-38628 NN denotes IGEPAL
T17989 38629-38630 -LRB- denotes (
T17990 38630-38635 NNP denotes Sigma
T17991 38635-38637 , denotes ,
T17992 38637-38640 NNP denotes St.
T17993 38641-38646 NNP denotes Louis
T17994 38646-38648 , denotes ,
T17995 38648-38656 NNP denotes Missouri
T17996 38656-38658 , denotes ,
T17997 38658-38664 NNP denotes United
T17998 38665-38671 NNP denotes States
T17999 38671-38672 -RRB- denotes )
T18000 38672-38673 . denotes .
T18001 38673-38909 sentence denotes Nuclei were purified by centrifugation (10,000 × g for 30 min, at 4 °C) on sucrose cushions (buffer 1 with 1.2 M sucrose) and resuspended in nuclease buffer (50 mM Tris-HCl [pH 7.5], 20 mM NaCl, 0.32 M sucrose, 4 mM MgCl2, 1 mM CaCl2).
T18002 38674-38680 NNS denotes Nuclei
T18003 38686-38694 VBN denotes purified
T18004 38681-38685 VBD denotes were
T18005 38695-38697 IN denotes by
T18006 38698-38712 NN denotes centrifugation
T18007 38713-38714 -LRB- denotes (
T18008 38723-38724 NN denotes g
T18009 38714-38720 CD denotes 10,000
T18010 38721-38722 SYM denotes ×
T18011 38725-38728 IN denotes for
T18012 38729-38731 CD denotes 30
T18013 38732-38735 NN denotes min
T18014 38735-38737 , denotes ,
T18015 38737-38739 IN denotes at
T18016 38740-38741 CD denotes 4
T18017 38742-38744 NN denotes °C
T18018 38744-38745 -RRB- denotes )
T18019 38746-38748 IN denotes on
T18020 38749-38756 NN denotes sucrose
T18021 38757-38765 NNS denotes cushions
T18022 38766-38767 -LRB- denotes (
T18023 38767-38773 NN denotes buffer
T18024 38774-38775 CD denotes 1
T18025 38776-38780 IN denotes with
T18026 38781-38784 CD denotes 1.2
T18027 38785-38786 NN denotes M
T18028 38787-38794 NN denotes sucrose
T18029 38794-38795 -RRB- denotes )
T18030 38796-38799 CC denotes and
T18031 38800-38811 VBN denotes resuspended
T18032 38812-38814 IN denotes in
T18033 38815-38823 NN denotes nuclease
T18034 38824-38830 NN denotes buffer
T18035 38831-38832 -LRB- denotes (
T18036 38843-38846 NN denotes HCl
T18037 38832-38834 CD denotes 50
T18038 38835-38837 NN denotes mM
T18039 38838-38842 NN denotes Tris
T18040 38842-38843 HYPH denotes -
T18041 38847-38848 -LRB- denotes [
T18042 38848-38850 NN denotes pH
T18043 38851-38854 CD denotes 7.5
T18044 38854-38855 -RRB- denotes ]
T18045 38855-38857 , denotes ,
T18046 38857-38859 CD denotes 20
T18047 38860-38862 NN denotes mM
T18048 38863-38867 NN denotes NaCl
T18049 38867-38869 , denotes ,
T18050 38869-38873 CD denotes 0.32
T18051 38874-38875 NN denotes M
T18052 38876-38883 NN denotes sucrose
T18053 38883-38885 , denotes ,
T18054 38885-38886 CD denotes 4
T18055 38887-38889 NN denotes mM
T18056 38890-38895 NN denotes MgCl2
T18057 38895-38897 , denotes ,
T18058 38897-38898 CD denotes 1
T18059 38899-38901 NN denotes mM
T18060 38902-38907 NN denotes CaCl2
T18061 38907-38908 -RRB- denotes )
T18062 38908-38909 . denotes .
T18063 38909-39024 sentence denotes About 2.106 nuclei were incubated with increasing quantities of MNase (0.04–1.6 units) or DNase I (0.25–16 units).
T18064 38910-38915 IN denotes About
T18065 38916-38921 CD denotes 2.106
T18066 38922-38928 NNS denotes nuclei
T18067 38934-38943 VBN denotes incubated
T18068 38929-38933 VBD denotes were
T18069 38944-38948 IN denotes with
T18070 38949-38959 VBG denotes increasing
T18071 38960-38970 NNS denotes quantities
T18072 38971-38973 IN denotes of
T18073 38974-38979 NN denotes MNase
T18074 38980-38981 -LRB- denotes (
T18075 38990-38995 NNS denotes units
T18076 38981-38985 CD denotes 0.04
T18077 38986-38989 CD denotes 1.6
T18078 38985-38986 SYM denotes
T18079 38995-38996 -RRB- denotes )
T18080 38997-38999 CC denotes or
T18081 39000-39005 NN denotes DNase
T18082 39006-39007 CD denotes I
T18083 39008-39009 -LRB- denotes (
T18084 39017-39022 NNS denotes units
T18085 39009-39013 CD denotes 0.25
T18086 39014-39016 CD denotes 16
T18087 39013-39014 SYM denotes
T18088 39022-39023 -RRB- denotes )
T18089 39023-39024 . denotes .
T18090 39024-39092 sentence denotes Digestion time at 37 °C was 10 min for MNase and 2 min for DNase I.
T18091 39025-39034 NN denotes Digestion
T18092 39035-39039 NN denotes time
T18093 39049-39052 VBD denotes was
T18094 39040-39042 IN denotes at
T18095 39043-39045 CD denotes 37
T18096 39046-39048 NN denotes °C
T18097 39053-39055 CD denotes 10
T18098 39056-39059 NN denotes min
T18099 39060-39063 IN denotes for
T18100 39064-39069 NN denotes MNase
T18101 39070-39073 CC denotes and
T18102 39074-39075 CD denotes 2
T18103 39076-39079 NN denotes min
T18104 39080-39083 IN denotes for
T18105 39084-39089 NN denotes DNase
T18106 39090-39091 CD denotes I
T18107 39091-39092 . denotes .
T18108 39092-39155 sentence denotes Digestions were stopped by adding SDS to 1% and EDTA to 50 mM.
T18109 39093-39103 NNS denotes Digestions
T18110 39109-39116 VBN denotes stopped
T18111 39104-39108 VBD denotes were
T18112 39117-39119 IN denotes by
T18113 39120-39126 VBG denotes adding
T18114 39127-39130 NN denotes SDS
T18115 39131-39133 IN denotes to
T18116 39134-39135 CD denotes 1
T18117 39135-39136 NN denotes %
T18118 39137-39140 CC denotes and
T18119 39141-39145 NN denotes EDTA
T18120 39146-39148 IN denotes to
T18121 39149-39151 CD denotes 50
T18122 39152-39154 NN denotes mM
T18123 39154-39155 . denotes .
T18124 39155-39272 sentence denotes DNAs were prepared by proteinase K digestion followed by phenol-chloroform extraction and isopropanol precipitation.
T18125 39156-39160 NNS denotes DNAs
T18126 39166-39174 VBN denotes prepared
T18127 39161-39165 VBD denotes were
T18128 39175-39177 IN denotes by
T18129 39178-39188 NN denotes proteinase
T18130 39189-39190 NN denotes K
T18131 39191-39200 NN denotes digestion
T18132 39201-39209 VBN denotes followed
T18133 39210-39212 IN denotes by
T18134 39213-39219 NN denotes phenol
T18135 39220-39230 NN denotes chloroform
T18136 39219-39220 HYPH denotes -
T18137 39231-39241 NN denotes extraction
T18138 39242-39245 CC denotes and
T18139 39246-39257 NN denotes isopropanol
T18140 39258-39271 NN denotes precipitation
T18141 39271-39272 . denotes .
T18142 39272-39575 sentence denotes To test the association of histone H3 with chromatin in control and p150-depleted cells, isolated nuclei were incubated on ice for 30 min in buffer 2 (50 mM Hepes [pH7.9], 20% Glycerol, 3 mM MgCl2, 0.1% IGEPAL, 0.5 mM DTT, 0.5 mM PMSF) supplemented with either 0.1 M, 0.3 M, 0.45 M, 0.7 M, or 1 M NaCl.
T18143 39273-39275 TO denotes To
T18144 39276-39280 VB denotes test
T18145 39383-39392 VBN denotes incubated
T18146 39281-39284 DT denotes the
T18147 39285-39296 NN denotes association
T18148 39297-39299 IN denotes of
T18149 39300-39307 NN denotes histone
T18150 39308-39310 NN denotes H3
T18151 39311-39315 IN denotes with
T18152 39316-39325 NN denotes chromatin
T18153 39326-39328 IN denotes in
T18154 39329-39336 NN denotes control
T18155 39355-39360 NNS denotes cells
T18156 39337-39340 CC denotes and
T18157 39341-39345 NN denotes p150
T18158 39346-39354 VBN denotes depleted
T18159 39345-39346 HYPH denotes -
T18160 39360-39362 , denotes ,
T18161 39362-39370 VBN denotes isolated
T18162 39371-39377 NNS denotes nuclei
T18163 39378-39382 VBD denotes were
T18164 39393-39395 IN denotes on
T18165 39396-39399 NN denotes ice
T18166 39400-39403 IN denotes for
T18167 39404-39406 CD denotes 30
T18168 39407-39410 NN denotes min
T18169 39411-39413 IN denotes in
T18170 39414-39420 NN denotes buffer
T18171 39421-39422 CD denotes 2
T18172 39423-39424 -LRB- denotes (
T18173 39430-39435 NN denotes Hepes
T18174 39424-39426 CD denotes 50
T18175 39427-39429 NN denotes mM
T18176 39436-39437 -LRB- denotes [
T18177 39437-39442 NN denotes pH7.9
T18178 39442-39443 -RRB- denotes ]
T18179 39443-39445 , denotes ,
T18180 39445-39447 CD denotes 20
T18181 39447-39448 NN denotes %
T18182 39449-39457 NN denotes Glycerol
T18183 39457-39459 , denotes ,
T18184 39459-39460 CD denotes 3
T18185 39461-39463 NN denotes mM
T18186 39464-39469 NN denotes MgCl2
T18187 39469-39471 , denotes ,
T18188 39471-39474 CD denotes 0.1
T18189 39474-39475 NN denotes %
T18190 39476-39482 NN denotes IGEPAL
T18191 39482-39484 , denotes ,
T18192 39484-39487 CD denotes 0.5
T18193 39488-39490 NN denotes mM
T18194 39491-39494 NN denotes DTT
T18195 39494-39496 , denotes ,
T18196 39496-39499 CD denotes 0.5
T18197 39500-39502 NN denotes mM
T18198 39503-39507 NN denotes PMSF
T18199 39507-39508 -RRB- denotes )
T18200 39509-39521 VBN denotes supplemented
T18201 39522-39526 IN denotes with
T18202 39527-39533 CC denotes either
T18203 39538-39539 NN denotes M
T18204 39534-39537 CD denotes 0.1
T18205 39570-39574 NN denotes NaCl
T18206 39539-39541 , denotes ,
T18207 39541-39544 CD denotes 0.3
T18208 39545-39546 NN denotes M
T18209 39546-39548 , denotes ,
T18210 39548-39552 CD denotes 0.45
T18211 39553-39554 NN denotes M
T18212 39554-39556 , denotes ,
T18213 39556-39559 CD denotes 0.7
T18214 39560-39561 NN denotes M
T18215 39561-39563 , denotes ,
T18216 39563-39565 CC denotes or
T18217 39566-39567 CD denotes 1
T18218 39568-39569 NN denotes M
T18219 39574-39575 . denotes .
T18220 39575-39699 sentence denotes After centrifugation at 15,000 g, pellets and supernants were analyzed by Western blot using a histone H3 antibody (Abcam).
T18221 39576-39581 IN denotes After
T18222 39638-39646 VBN denotes analyzed
T18223 39582-39596 NN denotes centrifugation
T18224 39597-39599 IN denotes at
T18225 39600-39606 CD denotes 15,000
T18226 39607-39608 NN denotes g
T18227 39608-39610 , denotes ,
T18228 39610-39617 NNS denotes pellets
T18229 39618-39621 CC denotes and
T18230 39622-39632 NNS denotes supernants
T18231 39633-39637 VBD denotes were
T18232 39647-39649 IN denotes by
T18233 39650-39657 NNP denotes Western
T18234 39658-39662 NN denotes blot
T18235 39663-39668 VBG denotes using
T18236 39669-39670 DT denotes a
T18237 39682-39690 NN denotes antibody
T18238 39671-39678 NN denotes histone
T18239 39679-39681 NN denotes H3
T18240 39691-39692 -LRB- denotes (
T18241 39692-39697 NNP denotes Abcam
T18242 39697-39698 -RRB- denotes )
T18243 39698-39699 . denotes .
T18631 39701-39705 NN denotes ChIP
T18632 39705-39706 . denotes .
T18633 39706-39800 sentence denotes We prepared native chromatin fragments of two to six nucleosomes in length as described [28].
T18634 39707-39709 PRP denotes We
T18635 39710-39718 VBD denotes prepared
T18636 39719-39725 JJ denotes native
T18637 39736-39745 NNS denotes fragments
T18638 39726-39735 NN denotes chromatin
T18639 39746-39748 IN denotes of
T18640 39749-39752 CD denotes two
T18641 39756-39759 CD denotes six
T18642 39753-39755 IN denotes to
T18643 39760-39771 NNS denotes nucleosomes
T18644 39772-39774 IN denotes in
T18645 39775-39781 NN denotes length
T18646 39782-39784 IN denotes as
T18647 39785-39794 VBN denotes described
T18648 39795-39796 -LRB- denotes [
T18649 39796-39798 CD denotes 28
T18650 39798-39799 -RRB- denotes ]
T18651 39799-39800 . denotes .
T18652 39800-39880 sentence denotes 5 μg of chromatin were incubated overnight with 10 μl of commercial antibodies.
T18653 39801-39802 CD denotes 5
T18654 39803-39805 NN denotes μg
T18655 39824-39833 VBN denotes incubated
T18656 39806-39808 IN denotes of
T18657 39809-39818 NN denotes chromatin
T18658 39819-39823 VBD denotes were
T18659 39834-39843 RB denotes overnight
T18660 39844-39848 IN denotes with
T18661 39849-39851 CD denotes 10
T18662 39852-39854 NN denotes μl
T18663 39855-39857 IN denotes of
T18664 39858-39868 JJ denotes commercial
T18665 39869-39879 NNS denotes antibodies
T18666 39879-39880 . denotes .
T18667 39880-40035 sentence denotes After incubation with protein-G sepharose and three washes, immunoprecipitated DNA was purified, sized onto an agarose gel, and analyzed by Southern blot.
T18668 39881-39886 IN denotes After
T18669 39968-39976 VBN denotes purified
T18670 39887-39897 NN denotes incubation
T18671 39898-39902 IN denotes with
T18672 39903-39910 NN denotes protein
T18673 39911-39912 NN denotes G
T18674 39910-39911 HYPH denotes -
T18675 39913-39922 NN denotes sepharose
T18676 39923-39926 CC denotes and
T18677 39927-39932 CD denotes three
T18678 39933-39939 NNS denotes washes
T18679 39939-39941 , denotes ,
T18680 39941-39959 VBN denotes immunoprecipitated
T18681 39960-39963 NN denotes DNA
T18682 39964-39967 VBD denotes was
T18683 39976-39978 , denotes ,
T18684 39978-39983 VBN denotes sized
T18685 39984-39988 IN denotes onto
T18686 39989-39991 DT denotes an
T18687 40000-40003 NN denotes gel
T18688 39992-39999 NN denotes agarose
T18689 40003-40005 , denotes ,
T18690 40005-40008 CC denotes and
T18691 40009-40017 VBN denotes analyzed
T18692 40018-40020 IN denotes by
T18693 40021-40029 NNP denotes Southern
T18694 40030-40034 NN denotes blot
T18695 40034-40035 . denotes .
T18696 40035-40150 sentence denotes Hybridization signals were quantified using an Instant Imager (PerkinElmer, Wellesley, California, United States).
T18697 40036-40049 NN denotes Hybridization
T18698 40050-40057 NNS denotes signals
T18699 40063-40073 VBN denotes quantified
T18700 40058-40062 VBD denotes were
T18701 40074-40079 VBG denotes using
T18702 40080-40082 DT denotes an
T18703 40091-40097 NNP denotes Imager
T18704 40083-40090 NNP denotes Instant
T18705 40098-40099 -LRB- denotes (
T18706 40099-40110 NNP denotes PerkinElmer
T18707 40110-40112 , denotes ,
T18708 40112-40121 NNP denotes Wellesley
T18709 40121-40123 , denotes ,
T18710 40123-40133 NNP denotes California
T18711 40133-40135 , denotes ,
T18712 40135-40141 NNP denotes United
T18713 40142-40148 NNP denotes States
T18714 40148-40149 -RRB- denotes )
T18715 40149-40150 . denotes .
T18716 40150-40210 sentence denotes Antibodies specific for H4K20me3 were purchased from Abcam.
T18717 40151-40161 NNS denotes Antibodies
T18718 40189-40198 VBN denotes purchased
T18719 40162-40170 JJ denotes specific
T18720 40171-40174 IN denotes for
T18721 40175-40183 NN denotes H4K20me3
T18722 40184-40188 VBD denotes were
T18723 40199-40203 IN denotes from
T18724 40204-40209 NNP denotes Abcam
T18725 40209-40210 . denotes .
T18726 40210-40316 sentence denotes Antibodies for H3K9me3 were purchased from both Abcam and Upstate Biotechnology and gave similar results.
T18727 40211-40221 NNS denotes Antibodies
T18728 40239-40248 VBN denotes purchased
T18729 40222-40225 IN denotes for
T18730 40226-40233 NN denotes H3K9me3
T18731 40234-40238 VBD denotes were
T18732 40249-40253 IN denotes from
T18733 40254-40258 CC denotes both
T18734 40259-40264 NNP denotes Abcam
T18735 40265-40268 CC denotes and
T18736 40269-40276 NNP denotes Upstate
T18737 40277-40290 NNP denotes Biotechnology
T18738 40291-40294 CC denotes and
T18739 40295-40299 VBD denotes gave
T18740 40300-40307 JJ denotes similar
T18741 40308-40315 NNS denotes results
T18742 40315-40316 . denotes .
T18743 40316-40544 sentence denotes For Southern blot analysis, we used a 240-bp EcoRI/BamHI fragment from pSAT (major satellite probe) [45–47] and a 360-bp EcoRI/HindIII fragment from R198, corresponding to three copies of the 120-bp minor satellite repeat [49].
T18744 40317-40320 IN denotes For
T18745 40348-40352 VBD denotes used
T18746 40321-40329 NNP denotes Southern
T18747 40330-40334 NN denotes blot
T18748 40335-40343 NN denotes analysis
T18749 40343-40345 , denotes ,
T18750 40345-40347 PRP denotes we
T18751 40353-40354 DT denotes a
T18752 40374-40382 NN denotes fragment
T18753 40355-40358 CD denotes 240
T18754 40359-40361 NN denotes bp
T18755 40358-40359 HYPH denotes -
T18756 40362-40367 NN denotes EcoRI
T18757 40368-40373 NN denotes BamHI
T18758 40367-40368 HYPH denotes /
T18759 40383-40387 IN denotes from
T18760 40388-40392 NN denotes pSAT
T18761 40393-40394 -LRB- denotes (
T18762 40410-40415 NN denotes probe
T18763 40394-40399 JJ denotes major
T18764 40400-40409 NN denotes satellite
T18765 40415-40416 -RRB- denotes )
T18766 40417-40418 -LRB- denotes [
T18767 40418-40420 CD denotes 45
T18768 40420-40421 SYM denotes
T18769 40421-40423 CD denotes 47
T18770 40423-40424 -RRB- denotes ]
T18771 40425-40428 CC denotes and
T18772 40429-40430 DT denotes a
T18773 40452-40460 NN denotes fragment
T18774 40431-40434 CD denotes 360
T18775 40435-40437 NN denotes bp
T18776 40434-40435 HYPH denotes -
T18777 40438-40443 NN denotes EcoRI
T18778 40444-40451 NN denotes HindIII
T18779 40443-40444 HYPH denotes /
T18780 40461-40465 IN denotes from
T18781 40466-40470 NN denotes R198
T18782 40470-40472 , denotes ,
T18783 40472-40485 VBG denotes corresponding
T18784 40486-40488 IN denotes to
T18785 40489-40494 CD denotes three
T18786 40495-40501 NNS denotes copies
T18787 40502-40504 IN denotes of
T18788 40505-40508 DT denotes the
T18789 40532-40538 NN denotes repeat
T18790 40509-40512 CD denotes 120
T18791 40513-40515 NN denotes bp
T18792 40512-40513 HYPH denotes -
T18793 40516-40521 JJ denotes minor
T18794 40522-40531 NN denotes satellite
T18795 40539-40540 -LRB- denotes [
T18796 40540-40542 CD denotes 49
T18797 40542-40543 -RRB- denotes ]
T18798 40543-40544 . denotes .
T18799 40544-40603 sentence denotes Probes used in FISH experiments were described in [46–48].
T18800 40545-40551 NNS denotes Probes
T18801 40582-40591 VBN denotes described
T18802 40552-40556 VBN denotes used
T18803 40557-40559 IN denotes in
T18804 40560-40564 NN denotes FISH
T18805 40565-40576 NNS denotes experiments
T18806 40577-40581 VBD denotes were
T18807 40592-40594 IN denotes in
T18808 40595-40596 -LRB- denotes [
T18809 40596-40598 CD denotes 46
T18810 40598-40599 SYM denotes
T18811 40599-40601 CD denotes 48
T18812 40601-40602 -RRB- denotes ]
T18813 40602-40603 . denotes .
T18814 40603-40653 sentence denotes The probe for IAP elements was described in [50].
T18815 40604-40607 DT denotes The
T18816 40608-40613 NN denotes probe
T18817 40635-40644 VBN denotes described
T18818 40614-40617 IN denotes for
T18819 40618-40621 NN denotes IAP
T18820 40622-40630 NNS denotes elements
T18821 40631-40634 VBD denotes was
T18822 40645-40647 IN denotes in
T18823 40648-40649 -LRB- denotes [
T18824 40649-40651 CD denotes 50
T18825 40651-40652 -RRB- denotes ]
T18826 40652-40653 . denotes .
T807 0-3 NN denotes CAF
T8538 11274-11276 CD denotes 16
R10 T810 T807 punct -,CAF
R11 T811 T807 nummod 1,CAF
R12 T812 T808 acomp Essential,Is
R13 T813 T812 prep for,Essential
R14 T814 T815 compound Heterochromatin,Organization
R15 T815 T813 pobj Organization,for
R16 T816 T808 prep in,Is
R17 T817 T818 amod Pluripotent,Cells
R18 T818 T816 pobj Cells,in
R19 T819 T818 amod Embryonic,Cells
R20 T822 T823 prep During,are
R21 T824 T825 amod mammalian,development
R22 T825 T822 pobj development,During
R23 T826 T823 punct ", ",are
R24 T827 T828 compound chromatin,dynamics
R25 T828 T823 nsubj dynamics,are
R26 T829 T828 cc and,dynamics
R27 T830 T831 amod epigenetic,marking
R28 T831 T828 conj marking,dynamics
R29 T832 T823 acomp important,are
R30 T833 T832 prep for,important
R31 T834 T835 compound genome,reprogramming
R32 T835 T833 pobj reprogramming,for
R33 T836 T823 punct .,are
R34 T838 T839 amod Recent,data
R35 T839 T840 nsubj data,suggest
R36 T841 T842 det an,role
R37 T842 T840 dobj role,suggest
R38 T843 T842 amod important,role
R39 T844 T842 prep for,role
R40 T845 T846 det the,machinery
R41 T846 T844 pobj machinery,for
R42 T847 T848 compound chromatin,assembly
R43 T848 T846 compound assembly,machinery
R44 T849 T842 prep in,role
R45 T850 T851 det this,process
R46 T851 T849 pobj process,in
R47 T852 T840 punct .,suggest
R48 T854 T855 aux To,analyze
R49 T855 T856 advcl analyze,generated
R50 T857 T858 det the,role
R51 T858 T855 dobj role,analyze
R52 T859 T858 prep of,role
R53 T860 T861 compound chromatin,assembly
R54 T861 T862 compound assembly,factor
R55 T862 T859 pobj factor,of
R56 T863 T862 nummod 1,factor
R57 T864 T862 punct (,factor
R58 T865 T862 appos CAF,factor
R59 T866 T865 punct -,CAF
R60 T867 T865 nummod 1,CAF
R61 T868 T862 punct ),factor
R62 T869 T855 prep during,analyze
R63 T870 T871 compound pre-implantation,development
R64 T871 T869 pobj development,during
R65 T872 T856 punct ", ",generated
R66 T873 T856 nsubj we,generated
R67 T874 T875 det a,line
R68 T875 T856 dobj line,generated
R69 T876 T875 compound mouse,line
R70 T877 T875 acl carrying,line
R71 T878 T879 det a,mutation
R72 T879 T877 dobj mutation,carrying
R73 T880 T879 amod targeted,mutation
R74 T881 T877 prep in,carrying
R75 T882 T883 det the,gene
R76 T883 T881 pobj gene,in
R77 T884 T883 acl encoding,gene
R78 T885 T886 poss its,subunit
R79 T886 T884 dobj subunit,encoding
R80 T887 T886 amod large,subunit
R81 T888 T886 punct ", ",subunit
R82 T889 T886 appos p150CAF,subunit
R83 T890 T889 punct -,p150CAF
R84 T891 T889 nummod 1,p150CAF
R85 T892 T856 punct .,generated
R86 T894 T895 nsubj Loss,leads
R87 T896 T894 prep of,Loss
R88 T897 T896 pobj p150CAF,of
R89 T898 T897 punct -,p150CAF
R90 T899 T897 nummod 1,p150CAF
R91 T900 T894 prep in,Loss
R92 T901 T902 amod homozygous,mutants
R93 T902 T900 pobj mutants,in
R94 T903 T895 prep to,leads
R95 T904 T905 amod developmental,arrest
R96 T905 T903 pobj arrest,to
R97 T906 T905 prep at,arrest
R98 T907 T908 det the,stage
R99 T908 T906 pobj stage,at
R100 T909 T910 nummod 16,cell
R101 T910 T908 compound cell,stage
R102 T911 T910 punct -,cell
R103 T912 T895 punct .,leads
R104 T914 T915 nsubj Absence,results
R105 T916 T914 prep of,Absence
R106 T917 T916 pobj p150CAF,of
R107 T918 T917 punct -,p150CAF
R108 T919 T917 nummod 1,p150CAF
R109 T920 T914 prep in,Absence
R110 T921 T922 det these,embryos
R111 T922 T920 pobj embryos,in
R112 T923 T915 prep in,results
R113 T924 T925 amod severe,alterations
R114 T925 T923 pobj alterations,in
R115 T926 T925 prep in,alterations
R116 T927 T928 det the,organization
R117 T928 T926 pobj organization,in
R118 T929 T928 amod nuclear,organization
R119 T930 T928 prep of,organization
R120 T931 T932 amod constitutive,heterochromatin
R121 T932 T930 pobj heterochromatin,of
R122 T933 T915 punct .,results
R123 T935 T936 nsubj We,provide
R124 T937 T936 dobj evidence,provide
R125 T938 T939 mark that,reorganized
R126 T939 T937 acl reorganized,evidence
R127 T940 T939 prep in,reorganized
R128 T941 T942 amod wild,type
R129 T942 T944 compound type,embryos
R130 T943 T942 punct -,type
R131 T944 T940 pobj embryos,in
R132 T945 T939 punct ", ",reorganized
R133 T946 T947 compound heterochromatin,domains
R134 T947 T939 nsubjpass domains,reorganized
R135 T948 T939 auxpass are,reorganized
R136 T949 T939 advmod extensively,reorganized
R137 T950 T939 prep between,reorganized
R138 T951 T952 det the,stages
R139 T952 T950 pobj stages,between
R140 T953 T954 nummod two,cell
R141 T954 T952 nmod cell,stages
R142 T955 T954 punct -,cell
R143 T956 T954 cc and,cell
R144 T957 T954 conj blastocyst,cell
R145 T958 T936 punct .,provide
R146 T960 T961 prep In,displays
R147 T962 T963 nmod p150CAF,embryos
R148 T963 T960 pobj embryos,In
R149 T964 T962 punct -,p150CAF
R150 T965 T962 nummod 1,p150CAF
R151 T966 T963 nmod mutant,embryos
R152 T967 T968 nummod 16,cell
R153 T968 T970 compound cell,stage
R154 T969 T968 punct -,cell
R155 T970 T963 compound stage,embryos
R156 T971 T961 punct ", ",displays
R157 T972 T973 det the,organization
R158 T973 T961 nsubj organization,displays
R159 T974 T973 amod altered,organization
R160 T975 T973 prep of,organization
R161 T976 T975 pobj heterochromatin,of
R162 T977 T961 dobj similarities,displays
R163 T978 T977 prep to,similarities
R164 T979 T980 det the,structure
R165 T980 T978 pobj structure,to
R166 T981 T980 prep of,structure
R167 T982 T981 pobj heterochromatin,of
R168 T983 T961 prep in,displays
R169 T984 T985 quantmod two,four
R170 T985 T988 nummod four,cell
R171 T986 T985 punct -,four
R172 T987 T985 quantmod to,four
R173 T988 T990 nmod cell,stage
R174 T989 T988 punct -,cell
R175 T990 T991 nmod stage,embryos
R176 T991 T983 pobj embryos,in
R177 T992 T993 amod wild,type
R178 T993 T991 compound type,embryos
R179 T994 T993 punct -,type
R180 T995 T961 punct ", ",displays
R181 T996 T961 advcl suggesting,displays
R182 T997 T998 mark that,required
R183 T998 T996 ccomp required,suggesting
R184 T999 T998 nsubjpass CAF,required
R185 T1000 T999 punct -,CAF
R186 T1001 T999 nummod 1,CAF
R187 T1002 T998 auxpass is,required
R188 T1003 T998 prep for,required
R189 T1004 T1005 det the,maturation
R190 T1005 T1003 pobj maturation,for
R191 T1006 T1005 prep of,maturation
R192 T1007 T1006 pobj heterochromatin,of
R193 T1008 T998 prep during,required
R194 T1009 T1010 compound preimplantation,development
R195 T1010 T1008 pobj development,during
R196 T1011 T961 punct .,displays
R197 T1013 T1014 prep In,results
R198 T1015 T1016 amod embryonic,cells
R199 T1016 T1013 pobj cells,In
R200 T1017 T1016 compound stem,cells
R201 T1018 T1014 punct ", ",results
R202 T1019 T1014 nsubj depletion,results
R203 T1020 T1019 prep of,depletion
R204 T1021 T1020 pobj p150CAF,of
R205 T1022 T1021 punct -,p150CAF
R206 T1023 T1021 nummod 1,p150CAF
R207 T1024 T1019 acl using,depletion
R208 T1025 T1026 compound RNA,interference
R209 T1026 T1024 dobj interference,using
R210 T1027 T1014 prep in,results
R211 T1028 T1029 det the,mislocalization
R212 T1029 T1027 pobj mislocalization,in
R213 T1030 T1029 punct ", ",mislocalization
R214 T1031 T1029 conj loss,mislocalization
R215 T1032 T1031 prep of,loss
R216 T1033 T1032 pobj clustering,of
R217 T1034 T1031 punct ", ",loss
R218 T1035 T1031 cc and,loss
R219 T1036 T1031 conj decondensation,loss
R220 T1037 T1029 prep of,mislocalization
R221 T1038 T1039 amod pericentric,domains
R222 T1039 T1037 pobj domains,of
R223 T1040 T1039 compound heterochromatin,domains
R224 T1041 T1014 punct .,results
R225 T1043 T1044 advmod Furthermore,results
R226 T1045 T1044 punct ", ",results
R227 T1046 T1044 nsubj loss,results
R228 T1047 T1046 prep of,loss
R229 T1048 T1047 pobj CAF,of
R230 T1049 T1048 punct -,CAF
R231 T1050 T1048 nummod 1,CAF
R232 T1051 T1046 prep in,loss
R233 T1052 T1053 det these,cells
R234 T1053 T1051 pobj cells,in
R235 T1054 T1044 prep in,results
R236 T1055 T1056 det the,alteration
R237 T1056 T1054 pobj alteration,in
R238 T1057 T1056 prep of,alteration
R239 T1058 T1059 amod epigenetic,methylation
R240 T1059 T1061 compound methylation,marks
R241 T1060 T1059 compound histone,methylation
R242 T1061 T1057 pobj marks,of
R243 T1062 T1056 prep at,alteration
R244 T1063 T1064 det the,level
R245 T1064 T1062 pobj level,at
R246 T1065 T1064 prep of,level
R247 T1066 T1067 amod pericentric,heterochromatin
R248 T1067 T1065 pobj heterochromatin,of
R249 T1068 T1044 punct .,results
R250 T1070 T1071 det These,alterations
R251 T1071 T1072 nsubjpass alterations,found
R252 T1073 T1071 prep of,alterations
R253 T1074 T1073 pobj heterochromatin,of
R254 T1075 T1072 auxpass are,found
R255 T1076 T1072 neg not,found
R256 T1077 T1072 prep in,found
R257 T1078 T1079 npadvmod p150CAF,depleted
R258 T1079 T1083 amod depleted,fibroblasts
R259 T1080 T1078 punct -,p150CAF
R260 T1081 T1078 nummod 1,p150CAF
R261 T1082 T1079 punct -,depleted
R262 T1083 T1077 pobj fibroblasts,in
R263 T1084 T1083 nmod mouse,fibroblasts
R264 T1085 T1083 amod embryonic,fibroblasts
R265 T1086 T1083 punct ", ",fibroblasts
R266 T1087 T1088 dep which,are
R267 T1088 T1083 relcl are,fibroblasts
R268 T1089 T1088 attr cells,are
R269 T1090 T1091 dep that,committed
R270 T1091 T1089 relcl committed,cells
R271 T1092 T1091 auxpass are,committed
R272 T1093 T1091 advmod already,committed
R273 T1094 T1091 dep lineage,committed
R274 T1095 T1072 punct ", ",found
R275 T1096 T1072 advcl suggesting,found
R276 T1097 T1098 mark that,required
R277 T1098 T1096 ccomp required,suggesting
R278 T1099 T1098 nsubjpass CAF,required
R279 T1100 T1099 punct -,CAF
R280 T1101 T1099 nummod 1,CAF
R281 T1102 T1098 auxpass is,required
R282 T1103 T1098 advmod specifically,required
R283 T1104 T1098 prep for,required
R284 T1105 T1106 compound heterochromatin,organization
R285 T1106 T1104 pobj organization,for
R286 T1107 T1098 prep in,required
R287 T1108 T1109 amod pluripotent,cells
R288 T1109 T1107 pobj cells,in
R289 T1110 T1109 amod embryonic,cells
R290 T1111 T1072 punct .,found
R291 T1113 T1114 poss Our,findings
R292 T1114 T1115 nsubj findings,underline
R293 T1116 T1117 det the,role
R294 T1117 T1115 dobj role,underline
R295 T1118 T1117 prep of,role
R296 T1119 T1120 det the,machinery
R297 T1120 T1118 pobj machinery,of
R298 T1121 T1122 compound chromatin,assembly
R299 T1122 T1120 compound assembly,machinery
R300 T1123 T1117 prep in,role
R301 T1124 T1123 pcomp controlling,in
R302 T1125 T1126 det the,organization
R303 T1126 T1124 dobj organization,controlling
R304 T1127 T1126 amod spatial,organization
R305 T1128 T1126 cc and,organization
R306 T1129 T1130 amod epigenetic,marking
R307 T1130 T1126 conj marking,organization
R308 T1131 T1126 prep of,organization
R309 T1132 T1133 det the,genome
R310 T1133 T1131 pobj genome,of
R311 T1134 T1124 prep in,controlling
R312 T1135 T1136 amod early,embryos
R313 T1136 T1134 pobj embryos,in
R314 T1137 T1136 cc and,embryos
R315 T1138 T1139 amod embryonic,cells
R316 T1139 T1136 conj cells,embryos
R317 T1140 T1139 compound stem,cells
R318 T1141 T1115 punct .,underline
R319 T807 T808 nsubj CAF,Is
R330 T2297 T2298 prep During,undergoes
R331 T2299 T2300 compound mouse,development
R332 T2300 T2297 pobj development,During
R333 T2301 T2300 compound pre-implantation,development
R334 T2302 T2298 punct ", ",undergoes
R335 T2303 T2304 det the,genome
R336 T2304 T2298 nsubj genome,undergoes
R337 T2305 T2306 det a,series
R338 T2306 T2298 dobj series,undergoes
R339 T2307 T2306 prep of,series
R340 T2308 T2309 amod major,changes
R341 T2309 T2307 pobj changes,of
R342 T2310 T2309 amod epigenetic,changes
R343 T2311 T2309 acl required,changes
R344 T2312 T2311 prep for,required
R345 T2313 T2314 amod embryonic,expression
R346 T2314 T2312 pobj expression,for
R347 T2315 T2314 compound gene,expression
R348 T2316 T2314 punct ", ",expression
R349 T2317 T2318 det the,maintenance
R350 T2318 T2314 conj maintenance,expression
R351 T2319 T2318 prep of,maintenance
R352 T2320 T2319 pobj totipotency,of
R353 T2321 T2318 punct ", ",maintenance
R354 T2322 T2318 cc and,maintenance
R355 T2323 T2324 det the,events
R356 T2324 T2318 conj events,maintenance
R357 T2325 T2324 amod first,events
R358 T2326 T2324 compound differentiation,events
R359 T2327 T2328 punct [,2
R360 T2328 T2298 parataxis 2,undergoes
R361 T2329 T2328 nummod 1,2
R362 T2330 T2328 punct ",",2
R363 T2331 T2328 punct ],2
R364 T2332 T2298 punct .,undergoes
R365 T2334 T2335 mark While,established
R366 T2335 T2339 advcl established,point
R367 T2336 T2337 amod many,studies
R368 T2337 T2335 nsubj studies,established
R369 T2338 T2335 aux have,established
R370 T2340 T2341 det the,importance
R371 T2341 T2335 dobj importance,established
R372 T2342 T2341 prep of,importance
R373 T2343 T2344 compound DNA,methylation
R374 T2344 T2342 pobj methylation,of
R375 T2345 T2341 prep in,importance
R376 T2346 T2347 amod epigenetic,reprogramming
R377 T2347 T2345 pobj reprogramming,in
R378 T2348 T2339 punct ", ",point
R379 T2349 T2350 amod recent,data
R380 T2350 T2339 nsubj data,point
R381 T2351 T2339 prep to,point
R382 T2352 T2353 det a,role
R383 T2353 T2351 pobj role,to
R384 T2354 T2353 amod crucial,role
R385 T2355 T2353 prep of,role
R386 T2356 T2355 pobj chromatin,of
R387 T2357 T2353 prep in,role
R388 T2358 T2359 det this,process
R389 T2359 T2357 pobj process,in
R390 T2360 T2361 punct [,3
R391 T2361 T2339 parataxis 3,point
R392 T2362 T2363 punct –,5
R393 T2363 T2361 prep 5,3
R394 T2364 T2361 punct ],3
R395 T2365 T2339 punct .,point
R396 T2367 T2368 advmod Yet,know
R397 T2369 T2368 nsubj we,know
R398 T2370 T2371 advmod very,little
R399 T2371 T2368 dobj little,know
R400 T2372 T2371 prep about,little
R401 T2373 T2374 det the,role
R402 T2374 T2372 pobj role,about
R403 T2375 T2374 prep of,role
R404 T2376 T2377 npadvmod histone,modifying
R405 T2377 T2378 amod modifying,enzymes
R406 T2378 T2375 pobj enzymes,of
R407 T2379 T2378 punct ", ",enzymes
R408 T2380 T2381 compound chromatin,remodeling
R409 T2381 T2382 compound remodeling,factors
R410 T2382 T2378 conj factors,enzymes
R411 T2383 T2382 punct ", ",factors
R412 T2384 T2382 cc and,factors
R413 T2385 T2386 compound histone,chaperones
R414 T2386 T2382 conj chaperones,factors
R415 T2387 T2374 prep during,role
R416 T2388 T2389 compound pre-implantation,development
R417 T2389 T2387 pobj development,during
R418 T2390 T2387 punct ", ",during
R419 T2391 T2387 cc or,during
R420 T2392 T2387 conj in,during
R421 T2393 T2394 compound stem,cells
R422 T2394 T2392 pobj cells,in
R423 T2395 T2394 acl derived,cells
R424 T2396 T2395 prep from,derived
R425 T2397 T2398 amod early,embryos
R426 T2398 T2396 pobj embryos,from
R427 T2399 T2400 punct [,6
R428 T2400 T2368 parataxis 6,know
R429 T2401 T2400 punct ],6
R430 T2402 T2368 punct .,know
R431 T2404 T2405 det A,subset
R432 T2405 T2406 nsubj subset,collaborate
R433 T2407 T2405 prep of,subset
R434 T2408 T2409 amod identified,chaperones
R435 T2409 T2407 pobj chaperones,of
R436 T2410 T2409 compound histone,chaperones
R437 T2411 T2409 cc and,chaperones
R438 T2412 T2413 compound chromatin,remodeling
R439 T2413 T2414 compound remodeling,complexes
R440 T2414 T2409 conj complexes,chaperones
R441 T2415 T2406 aux can,collaborate
R442 T2416 T2417 aux to,promote
R443 T2417 T2406 advcl promote,collaborate
R444 T2418 T2419 compound nucleosome,assembly
R445 T2419 T2417 dobj assembly,promote
R446 T2420 T2421 advmod in,vitro
R447 T2421 T2417 advmod vitro,promote
R448 T2422 T2406 cc and,collaborate
R449 T2423 T2406 conj are,collaborate
R450 T2424 T2423 advmod therefore,are
R451 T2425 T2423 prep in,are
R452 T2426 T2427 det a,position
R453 T2427 T2425 pobj position,in
R454 T2428 T2427 amod strategic,position
R455 T2429 T2430 aux to,control
R456 T2430 T2427 advcl control,position
R457 T2431 T2432 compound chromatin,assembly
R458 T2432 T2430 dobj assembly,control
R459 T2433 T2432 cc and,assembly
R460 T2434 T2432 conj maturation,assembly
R461 T2435 T2430 prep during,control
R462 T2436 T2435 pobj development,during
R463 T2437 T2438 punct [,8
R464 T2438 T2423 parataxis 8,are
R465 T2439 T2438 nummod 7,8
R466 T2440 T2438 punct ",",8
R467 T2441 T2438 punct ],8
R468 T2442 T2406 punct .,collaborate
R469 T2444 T2445 prep Among,is
R470 T2446 T2447 compound histone,chaperones
R471 T2447 T2444 pobj chaperones,Among
R472 T2448 T2445 punct ", ",is
R473 T2449 T2450 compound chromatin,assembly
R474 T2450 T2451 compound assembly,factor
R475 T2451 T2445 nsubj factor,is
R476 T2452 T2451 nummod 1,factor
R477 T2453 T2451 punct (,factor
R478 T2454 T2451 appos CAF,factor
R479 T2455 T2454 punct -,CAF
R480 T2456 T2454 nummod 1,CAF
R481 T2457 T2445 punct ),is
R482 T2458 T2459 det a,complex
R483 T2459 T2445 attr complex,is
R484 T2460 T2461 nummod three,subunit
R485 T2461 T2459 nmod subunit,complex
R486 T2462 T2461 punct -,subunit
R487 T2463 T2464 punct (,p150
R488 T2464 T2461 parataxis p150,subunit
R489 T2465 T2464 punct ", ",p150
R490 T2466 T2464 conj p60,p150
R491 T2467 T2466 punct ", ",p60
R492 T2468 T2466 cc and,p60
R493 T2469 T2466 conj p48,p60
R494 T2470 T2464 punct ),p150
R495 T2471 T2472 dep which,promotes
R496 T2472 T2459 relcl promotes,complex
R497 T2473 T2474 nmod histone,H3
R498 T2474 T2475 nmod H3,deposition
R499 T2475 T2472 dobj deposition,promotes
R500 T2476 T2474 cc and,H3
R501 T2477 T2474 conj H4,H3
R502 T2478 T2475 prep onto,deposition
R503 T2479 T2480 advmod newly,synthesized
R504 T2480 T2481 amod synthesized,DNA
R505 T2481 T2478 pobj DNA,onto
R506 T2482 T2472 prep during,promotes
R507 T2483 T2482 pobj replication,during
R508 T2484 T2483 cc or,replication
R509 T2485 T2486 compound DNA,repair
R510 T2486 T2483 conj repair,replication
R511 T2487 T2488 punct [,10
R512 T2488 T2445 parataxis 10,is
R513 T2489 T2488 nummod 9,10
R514 T2490 T2488 punct ",",10
R515 T2491 T2488 punct ],10
R516 T2492 T2445 punct .,is
R517 T2494 T2495 advmod Specifically,deposits
R518 T2496 T2495 punct ", ",deposits
R519 T2497 T2495 nsubj CAF,deposits
R520 T2498 T2497 punct -,CAF
R521 T2499 T2497 nummod 1,CAF
R522 T2500 T2501 det the,variant
R523 T2501 T2495 dobj variant,deposits
R524 T2502 T2503 compound histone,H3
R525 T2503 T2501 compound H3,variant
R526 T2504 T2501 appos H3.1,variant
R527 T2505 T2495 prep into,deposits
R528 T2506 T2505 pobj chromatin,into
R529 T2507 T2495 punct ", ",deposits
R530 T2508 T2495 prep in,deposits
R531 T2509 T2510 det a,pathway
R532 T2510 T2508 pobj pathway,in
R533 T2511 T2510 acl coupled,pathway
R534 T2512 T2511 prep to,coupled
R535 T2513 T2514 compound DNA,synthesis
R536 T2514 T2512 pobj synthesis,to
R537 T2515 T2495 punct ", ",deposits
R538 T2516 T2517 mark whereas,involved
R539 T2517 T2495 advcl involved,deposits
R540 T2518 T2519 det a,chaperone
R541 T2519 T2517 nsubjpass chaperone,involved
R542 T2520 T2519 amod second,chaperone
R543 T2521 T2519 compound histone,chaperone
R544 T2522 T2519 punct ", ",chaperone
R545 T2523 T2519 appos HIRA,chaperone
R546 T2524 T2517 punct ", ",involved
R547 T2525 T2517 auxpass is,involved
R548 T2526 T2517 prep in,involved
R549 T2527 T2528 det the,deposition
R550 T2528 T2526 pobj deposition,in
R551 T2529 T2528 prep of,deposition
R552 T2530 T2531 det the,variant
R553 T2531 T2529 pobj variant,of
R554 T2532 T2531 compound H3.3,variant
R555 T2533 T2528 prep in,deposition
R556 T2534 T2535 det a,pathway
R557 T2535 T2533 pobj pathway,in
R558 T2536 T2537 nmod DNA,synthesis
R559 T2537 T2535 nmod synthesis,pathway
R560 T2538 T2535 amod independent,pathway
R561 T2539 T2540 punct [,12
R562 T2540 T2495 parataxis 12,deposits
R563 T2541 T2540 nummod 11,12
R564 T2542 T2540 punct ",",12
R565 T2543 T2540 punct ],12
R566 T2544 T2495 punct .,deposits
R567 T2546 T2547 prep In,interacts
R568 T2548 T2546 pobj addition,In
R569 T2549 T2548 prep to,addition
R570 T2550 T2551 det this,activity
R571 T2551 T2549 pobj activity,to
R572 T2552 T2551 amod specific,activity
R573 T2553 T2554 compound chromatin,assembly
R574 T2554 T2551 compound assembly,activity
R575 T2555 T2547 punct ", ",interacts
R576 T2556 T2547 nsubj CAF,interacts
R577 T2557 T2556 punct -,CAF
R578 T2558 T2556 nummod 1,CAF
R579 T2559 T2547 prep with,interacts
R580 T2560 T2561 amod several,proteins
R581 T2561 T2559 pobj proteins,with
R582 T2562 T2561 relcl present,proteins
R583 T2563 T2562 prep in,present
R584 T2564 T2563 pobj heterochromatin,in
R585 T2565 T2561 punct ", ",proteins
R586 T2566 T2561 prep including,proteins
R587 T2567 T2568 compound heterochromatin,protein
R588 T2568 T2566 pobj protein,including
R589 T2569 T2568 nummod 1,protein
R590 T2570 T2568 punct (,protein
R591 T2571 T2568 appos HP1,protein
R592 T2572 T2568 punct ),protein
R593 T2573 T2574 cc and,MBD1
R594 T2574 T2568 appos MBD1,protein
R595 T2575 T2574 punct ", ",MBD1
R596 T2576 T2577 det a,protein
R597 T2577 T2574 appos protein,MBD1
R598 T2578 T2579 compound methyl,CpG
R599 T2579 T2577 compound CpG,protein
R600 T2580 T2579 punct -,CpG
R601 T2581 T2582 compound binding,domain
R602 T2582 T2577 compound domain,protein
R603 T2583 T2584 dep that,recruits
R604 T2584 T2577 relcl recruits,protein
R605 T2585 T2586 nmod histone,deacetylase
R606 T2586 T2587 nmod deacetylase,activities
R607 T2587 T2584 dobj activities,recruits
R608 T2588 T2586 cc and,deacetylase
R609 T2589 T2590 amod repressive,methyltransferase
R610 T2590 T2586 conj methyltransferase,deacetylase
R611 T2591 T2590 compound histone,methyltransferase
R612 T2592 T2593 punct [,13
R613 T2593 T2547 parataxis 13,interacts
R614 T2594 T2595 punct –,15
R615 T2595 T2593 prep 15,13
R616 T2596 T2593 punct ],13
R617 T2597 T2547 punct .,interacts
R618 T2599 T2600 advmod Furthermore,required
R619 T2601 T2600 punct ", ",required
R620 T2602 T2600 nsubjpass p150CAF,required
R621 T2603 T2602 punct -,p150CAF
R622 T2604 T2602 nummod 1,p150CAF
R623 T2605 T2600 auxpass is,required
R624 T2606 T2607 aux to,ensure
R625 T2607 T2600 advcl ensure,required
R626 T2608 T2609 det a,pool
R627 T2609 T2607 dobj pool,ensure
R628 T2610 T2611 npadvmod replication,specific
R629 T2611 T2609 amod specific,pool
R630 T2612 T2611 punct -,specific
R631 T2613 T2609 prep of,pool
R632 T2614 T2615 compound HP1,molecules
R633 T2615 T2613 pobj molecules,of
R634 T2616 T2607 prep at,ensure
R635 T2617 T2618 compound replication,sites
R636 T2618 T2616 pobj sites,at
R637 T2619 T2618 prep in,sites
R638 T2620 T2621 amod pericentric,heterochromatin
R639 T2621 T2619 pobj heterochromatin,in
R640 T2622 T2607 prep during,ensure
R641 T2623 T2624 amod mid,late
R642 T2624 T2626 amod late,phase
R643 T2625 T2624 punct -,late
R644 T2626 T2622 pobj phase,during
R645 T2627 T2626 compound S,phase
R646 T2628 T2629 punct [,16
R647 T2629 T2600 parataxis 16,required
R648 T2630 T2629 punct ],16
R649 T2631 T2600 punct .,required
R650 T2633 T2634 advcl Taken,suggest
R651 T2635 T2633 advmod together,Taken
R652 T2636 T2634 punct ", ",suggest
R653 T2637 T2638 det these,data
R654 T2638 T2634 nsubj data,suggest
R655 T2639 T2634 dobj roles,suggest
R656 T2640 T2639 prep for,roles
R657 T2641 T2640 pobj CAF,for
R658 T2642 T2641 punct -,CAF
R659 T2643 T2641 nummod 1,CAF
R660 T2644 T2639 prep in,roles
R661 T2645 T2646 det the,formation
R662 T2646 T2644 pobj formation,in
R663 T2647 T2646 prep of,formation
R664 T2648 T2647 pobj heterochromatin,of
R665 T2649 T2644 cc and,in
R666 T2650 T2644 conj in,in
R667 T2651 T2652 det the,heritability
R668 T2652 T2650 pobj heritability,in
R669 T2653 T2652 prep of,heritability
R670 T2654 T2655 amod epigenetic,traits
R671 T2655 T2653 pobj traits,of
R672 T2656 T2634 punct .,suggest
R673 T2658 T2659 mark While,studied
R674 T2659 T2670 advcl studied,lack
R675 T2660 T2661 det the,function
R676 T2661 T2659 nsubjpass function,studied
R677 T2662 T2661 prep of,function
R678 T2663 T2664 det this,chaperone
R679 T2664 T2662 pobj chaperone,of
R680 T2665 T2666 amod evolutionary,conserved
R681 T2666 T2664 amod conserved,chaperone
R682 T2667 T2664 compound histone,chaperone
R683 T2668 T2659 aux has,studied
R684 T2669 T2659 auxpass been,studied
R685 T2671 T2659 advmod extensively,studied
R686 T2672 T2659 advmod biochemically,studied
R687 T2673 T2670 punct ", ",lack
R688 T2674 T2670 nsubj we,lack
R689 T2675 T2670 advmod still,lack
R690 T2676 T2670 dobj information,lack
R691 T2677 T2676 prep concerning,information
R692 T2678 T2679 poss its,importance
R693 T2679 T2677 pobj importance,concerning
R694 T2680 T2679 prep during,importance
R695 T2681 T2682 amod early,development
R696 T2682 T2680 pobj development,during
R697 T2683 T2679 prep in,importance
R698 T2684 T2683 pobj mammals,in
R699 T2685 T2683 cc and,in
R700 T2686 T2683 conj in,in
R701 T2687 T2688 amod pluripotent,cells
R702 T2688 T2686 pobj cells,in
R703 T2689 T2690 amod such,as
R704 T2690 T2688 prep as,cells
R705 T2691 T2692 amod embryonic,stem
R706 T2692 T2693 nmod stem,cells
R707 T2693 T2690 pobj cells,as
R708 T2694 T2692 punct (,stem
R709 T2695 T2692 appos ES,stem
R710 T2696 T2693 punct ),cells
R711 T2697 T2670 punct .,lack
R712 T2699 T2700 advmod Here,analyzed
R713 T2701 T2700 punct ", ",analyzed
R714 T2702 T2700 nsubj we,analyzed
R715 T2703 T2700 aux have,analyzed
R716 T2704 T2705 det the,importance
R717 T2705 T2700 dobj importance,analyzed
R718 T2706 T2705 prep of,importance
R719 T2707 T2706 pobj CAF,of
R720 T2708 T2707 punct -,CAF
R721 T2709 T2707 nummod 1,CAF
R722 T2710 T2705 prep during,importance
R723 T2711 T2712 amod early,development
R724 T2712 T2710 pobj development,during
R725 T2713 T2712 compound mouse,development
R726 T2714 T2700 prep by,analyzed
R727 T2715 T2716 amod genetic,ablation
R728 T2716 T2714 pobj ablation,by
R729 T2717 T2700 cc and,analyzed
R730 T2718 T2700 conj in,analyzed
R731 T2719 T2720 compound ES,cells
R732 T2720 T2718 pobj cells,in
R733 T2721 T2718 prep by,in
R734 T2722 T2721 pobj depletion,by
R735 T2723 T2722 acl using,depletion
R736 T2724 T2725 compound RNA,interference
R737 T2725 T2723 dobj interference,using
R738 T2726 T2725 punct (,interference
R739 T2727 T2725 appos RNAi,interference
R740 T2728 T2700 punct ),analyzed
R741 T2729 T2700 punct .,analyzed
R742 T2731 T2732 nsubj We,show
R743 T2733 T2734 mark that,is
R744 T2734 T2732 ccomp is,show
R745 T2735 T2734 nsubj CAF,is
R746 T2736 T2735 punct -,CAF
R747 T2737 T2735 nummod 1,CAF
R748 T2738 T2734 acomp essential,is
R749 T2739 T2738 prep for,essential
R750 T2740 T2739 pobj viability,for
R751 T2741 T2734 prep in,is
R752 T2742 T2743 amod early,embryos
R753 T2743 T2741 pobj embryos,in
R754 T2744 T2743 compound mouse,embryos
R755 T2745 T2743 cc and,embryos
R756 T2746 T2747 compound ES,cells
R757 T2747 T2743 conj cells,embryos
R758 T2748 T2732 punct .,show
R759 T2750 T2751 nsubj We,provide
R760 T2752 T2751 dobj evidence,provide
R761 T2753 T2754 mark that,required
R762 T2754 T2752 acl required,evidence
R763 T2755 T2754 nsubjpass CAF,required
R764 T2756 T2755 punct -,CAF
R765 T2757 T2755 nummod 1,CAF
R766 T2758 T2754 auxpass is,required
R767 T2759 T2754 prep for,required
R768 T2760 T2761 det the,organization
R769 T2761 T2759 pobj organization,for
R770 T2762 T2761 amod spatial,organization
R771 T2763 T2761 cc and,organization
R772 T2764 T2765 amod epigenetic,marking
R773 T2765 T2761 conj marking,organization
R774 T2766 T2761 prep of,organization
R775 T2767 T2768 compound heterochromatin,domains
R776 T2768 T2766 pobj domains,of
R777 T2769 T2768 prep in,domains
R778 T2770 T2771 amod pluripotent,cells
R779 T2771 T2769 pobj cells,in
R780 T2772 T2771 amod embryonic,cells
R781 T2773 T2751 punct .,provide
R795 T7971 T7972 nsubj We,used
R805 T7973 T7974 compound gene,targeting
R806 T7974 T7972 dobj targeting,used
R807 T7975 T7972 prep in,used
R808 T7976 T7977 compound ES,cells
R809 T7977 T7975 pobj cells,in
R810 T7978 T7979 aux to,delete
R811 T8011 T8010 prep of,were
R812 T7979 T7972 advcl delete,used
R813 T8012 T8013 amod normal,size
R814 T8013 T8011 pobj size,of
R815 T8014 T8013 cc and,size
R816 T8015 T8013 conj weight,size
R817 T7980 T7979 dobj exon,delete
R818 T8016 T8010 punct ", ",were
R819 T8017 T8010 conj displayed,were
R820 T8018 T8019 det no,abnormalities
R821 T8019 T8017 dobj abnormalities,displayed
R822 T7981 T7980 nummod 3,exon
R823 T8020 T8019 amod obvious,abnormalities
R824 T7982 T7979 prep in,delete
R825 T8021 T8017 punct ", ",displayed
R826 T8022 T8017 cc and,displayed
R827 T8023 T8017 conj were,displayed
R828 T8024 T8023 acomp fertile,were
R829 T8025 T8003 punct .,born
R830 T7983 T7984 det the,gene
R831 T8027 T8028 csubj Crossing,failed
R832 T8029 T8030 amod heterozygous,mice
R833 T8030 T8027 dobj mice,Crossing
R834 T8031 T8032 aux to,generate
R835 T8032 T8028 xcomp generate,failed
R836 T8033 T8034 amod viable,mice
R837 T8034 T8032 dobj mice,generate
R838 T8035 T8034 amod newborn,mice
R839 T8036 T8034 nmod Chaf1a,mice
R840 T7984 T7982 pobj gene,in
R841 T8037 T8036 punct −,Chaf1a
R842 T8038 T8036 punct /,Chaf1a
R843 T8039 T8036 punct −,Chaf1a
R844 T8040 T8028 punct .,failed
R845 T7985 T7984 compound Chaf1a,gene
R846 T8042 T8043 advmod Furthermore,detected
R847 T7986 T7984 punct ", ",gene
R848 T8044 T8043 punct ", ",detected
R849 T8045 T8046 det no,embryos
R850 T8046 T8043 nsubjpass embryos,detected
R851 T8047 T8046 amod homozygous,embryos
R852 T7987 T7988 dep which,encodes
R853 T8048 T8046 nmod Chaf1a,embryos
R854 T8049 T8048 punct −,Chaf1a
R855 T8050 T8048 punct /,Chaf1a
R856 T7988 T7984 relcl encodes,gene
R857 T8051 T8048 punct −,Chaf1a
R858 T8052 T8043 auxpass were,detected
R859 T8053 T8043 prep at,detected
R860 T7989 T7988 dobj p150CAF,encodes
R861 T8054 T8053 pobj any,at
R862 T8055 T8054 prep of,any
R863 T8056 T8057 det the,stages
R864 T7990 T7989 punct -,p150CAF
R865 T8057 T8055 pobj stages,of
R866 T8058 T8057 amod post-implantation,stages
R867 T8059 T8043 punct .,detected
R868 T7991 T7989 nummod 1,p150CAF
R869 T8061 T8062 advmod However,detect
R870 T7992 T7993 punct (,1A
R871 T8063 T8062 punct ", ",detect
R872 T8064 T8062 nsubj we,detect
R873 T8065 T8062 aux could,detect
R874 T7993 T7972 parataxis 1A,used
R875 T8066 T8067 nmod Chaf1a,embryos
R876 T8067 T8062 dobj embryos,detect
R877 T8068 T8066 punct −,Chaf1a
R878 T7994 T7993 compound Figure,1A
R879 T8069 T8066 punct /,Chaf1a
R880 T8070 T8066 punct −,Chaf1a
R881 T8071 T8062 prep at,detect
R882 T8072 T8073 amod embryonic,day
R883 T8073 T8071 pobj day,at
R884 T8074 T8073 nummod 4,day
R885 T8075 T8073 punct (,day
R886 T7995 T7993 punct ),1A
R887 T8076 T8073 appos E4,day
R888 T7996 T7972 punct .,used
R889 T8077 T8062 punct ),detect
R890 T8078 T8062 advcl using,detect
R891 T7998 T7999 nmod Chaf1a,mice
R892 T8079 T8080 det a,strategy
R893 T8080 T8078 dobj strategy,using
R894 T8081 T8080 compound PCR,strategy
R895 T8082 T8083 punct (,1B
R896 T7999 T8003 nsubjpass mice,born
R897 T8083 T8062 parataxis 1B,detect
R898 T8084 T8083 compound Figure,1B
R899 T8085 T8083 punct ),1B
R900 T8000 T7998 punct +,Chaf1a
R901 T8086 T8062 punct .,detect
R902 T8088 T8089 nsubj They,represent
R903 T8001 T7998 punct /,Chaf1a
R904 T8090 T8091 advmod only,10
R905 T8091 T8092 nummod 10,%
R906 T8002 T7998 punct −,Chaf1a
R907 T8092 T8089 dobj %,represent
R908 T8093 T8092 prep of,%
R909 T8094 T8095 compound E4,embryos
R910 T8004 T8003 auxpass were,born
R911 T8095 T8093 pobj embryos,of
R912 T8096 T8092 acl obtained,%
R913 T8097 T8096 prep from,obtained
R914 T8098 T8099 nmod Chaf1a,intercrosses
R915 T8005 T8003 prep at,born
R916 T8099 T8097 pobj intercrosses,from
R917 T8100 T8098 punct +,Chaf1a
R918 T8101 T8098 punct /,Chaf1a
R919 T8006 T8007 det a,frequency
R920 T8102 T8098 punct −,Chaf1a
R921 T8103 T8099 compound mice,intercrosses
R922 T8104 T8089 punct ", ",represent
R923 T8105 T8089 advcl suggesting,represent
R924 T8007 T8005 pobj frequency,at
R925 T8106 T8107 mark that,degenerated
R926 T8107 T8105 ccomp degenerated,suggesting
R927 T8008 T8007 amod Mendelian,frequency
R928 T8108 T8109 amod more,half
R929 T8109 T8107 nsubj half,degenerated
R930 T8110 T8109 quantmod than,half
R931 T8111 T8109 prep of,half
R932 T8009 T8003 punct ", ",born
R933 T8112 T8113 det the,embryos
R934 T8113 T8111 pobj embryos,of
R935 T8114 T8115 amod homozygous,mutant
R936 T8115 T8113 compound mutant,embryos
R937 T8116 T8107 aux had,degenerated
R938 T8010 T8003 conj were,born
R939 T8223 T8224 advmod Thus,allows
R940 T8117 T8107 prep before,degenerated
R941 T8118 T8119 det this,stage
R942 T8119 T8117 pobj stage,before
R943 T8120 T8089 punct .,represent
R944 T8225 T8224 punct ", ",allows
R945 T8122 T8123 advmod Moreover,contained
R946 T8124 T8123 punct ", ",contained
R947 T8125 T8126 compound mutant,embryos
R948 T8126 T8123 nsubj embryos,contained
R949 T8226 T8224 nsubj depletion,allows
R950 T8127 T8128 advmod only,16
R951 T8128 T8131 nummod 16,cells
R952 T8129 T8128 quantmod eight,16
R953 T8227 T8226 prep of,depletion
R954 T8130 T8128 quantmod to,16
R955 T8131 T8123 dobj cells,contained
R956 T8132 T8123 prep at,contained
R957 T8228 T8229 nmod p150CAF,protein
R958 T8133 T8134 det the,stage
R959 T8134 T8132 pobj stage,at
R960 T8135 T8134 compound E4,stage
R961 T8229 T8227 pobj protein,of
R962 T8136 T8123 punct ", ",contained
R963 T8137 T8138 advmod instead,of
R964 T8138 T8123 prep of,contained
R965 T8230 T8228 punct -,p150CAF
R966 T8139 T8140 nummod 32,cells
R967 T8140 T8138 pobj cells,of
R968 T8141 T8140 acl observed,cells
R969 T8231 T8228 nummod 1,p150CAF
R970 T8142 T8141 prep for,observed
R971 T8143 T8144 amod wild,type
R972 T8144 T8146 nmod type,blastocysts
R973 T8232 T8226 prep from,depletion
R974 T8145 T8144 punct -,type
R975 T8146 T8142 pobj blastocysts,for
R976 T8147 T8144 cc or,type
R977 T8233 T8234 det this,stage
R978 T8148 T8144 conj heterozygous,type
R979 T8234 T8232 pobj stage,from
R980 T8149 T8150 punct (,1C
R981 T8150 T8123 parataxis 1C,contained
R982 T8151 T8150 compound Figure,1C
R983 T8152 T8150 cc and,1C
R984 T8235 T8236 det a,maximum
R985 T8153 T8150 conj 1D,1C
R986 T8154 T8150 punct ),1C
R987 T8155 T8123 punct .,contained
R988 T8157 T8158 amod Further,analysis
R989 T8158 T8159 nsubj analysis,allowed
R990 T8236 T8224 dobj maximum,allows
R991 T8160 T8158 prep by,analysis
R992 T8161 T8162 compound light,microscopy
R993 T8237 T8236 prep of,maximum
R994 T8162 T8160 pobj microscopy,by
R995 T8238 T8239 nummod two,divisions
R996 T8163 T8162 acl using,microscopy
R997 T8164 T8163 dobj immunofluorescence,using
R998 T8239 T8237 pobj divisions,of
R999 T8165 T8166 punct (,IF
R1000 T8166 T8164 parataxis IF,immunofluorescence
R1001 T8167 T8166 punct ),IF
R1002 T8240 T8239 amod additional,divisions
R1003 T8168 T8169 nsubj us,compare
R1004 T8169 T8159 ccomp compare,allowed
R1005 T8170 T8169 aux to,compare
R1006 T8241 T8239 compound cell,divisions
R1007 T8171 T8172 amod wild,type
R1008 T8172 T8174 nmod type,embryos
R1009 T8173 T8172 punct -,type
R1010 T8242 T8224 prep before,allows
R1011 T8174 T8169 dobj embryos,compare
R1012 T8175 T8172 cc and,type
R1013 T8176 T8177 npadvmod p150CAF,depleted
R1014 T8177 T8172 conj depleted,type
R1015 T8243 T8244 amod developmental,arrest
R1016 T8244 T8242 pobj arrest,before
R1017 T8178 T8176 punct -,p150CAF
R1018 T8245 T8224 punct .,allows
R1019 T8179 T8176 nummod 1,p150CAF
R1020 T8180 T8177 punct -,depleted
R1021 T8247 T8248 advmod Strikingly,found
R1022 T8181 T8159 punct .,allowed
R1023 T8183 T8184 det A,loss
R1024 T8184 T8185 nsubjpass loss,detected
R1025 T8249 T8248 punct ", ",found
R1026 T8186 T8184 prep of,loss
R1027 T8187 T8188 nmod p150CAF,staining
R1028 T8188 T8186 pobj staining,of
R1029 T8189 T8187 punct -,p150CAF
R1030 T8250 T8248 nsubj we,found
R1031 T8190 T8187 nummod 1,p150CAF
R1032 T8191 T8185 aux could,detected
R1033 T8251 T8252 mark that,appeared
R1034 T8192 T8185 neg not,detected
R1035 T8193 T8185 auxpass be,detected
R1036 T8194 T8185 prep before,detected
R1037 T8195 T8196 det the,stage
R1038 T8252 T8248 ccomp appeared,found
R1039 T8196 T8194 pobj stage,before
R1040 T8197 T8198 nummod eight,cell
R1041 T8198 T8196 compound cell,stage
R1042 T8199 T8198 punct -,cell
R1043 T8200 T8201 punct (,data
R1044 T8201 T8185 meta data,detected
R1045 T8253 T8254 det the,organization
R1046 T8202 T8201 amod unpublished,data
R1047 T8203 T8201 punct ),data
R1048 T8204 T8185 advcl suggesting,detected
R1049 T8254 T8252 nsubj organization,appeared
R1050 T8205 T8206 mark that,is
R1051 T8206 T8204 ccomp is,suggesting
R1052 T8207 T8208 advmod maternally,contributed
R1053 T8255 T8254 amod nuclear,organization
R1054 T8208 T8209 amod contributed,protein
R1055 T8209 T8206 nsubj protein,is
R1056 T8210 T8206 acomp present,is
R1057 T8256 T8254 prep of,organization
R1058 T8211 T8206 prep in,is
R1059 T8212 T8213 det the,embryo
R1060 T8213 T8211 pobj embryo,in
R1061 T8257 T8256 pobj heterochromatin,of
R1062 T8214 T8206 prep up,is
R1063 T8215 T8214 prep to,up
R1064 T8216 T8217 det the,stage
R1065 T8258 T8252 oprd abnormal,appeared
R1066 T8217 T8215 pobj stage,to
R1067 T8218 T8219 nummod four,cell
R1068 T8219 T8217 compound cell,stage
R1069 T8259 T8252 prep in,appeared
R1070 T8220 T8219 punct -,cell
R1071 T8221 T8185 punct .,detected
R1072 T8260 T8261 det the,nuclei
R1073 T8261 T8259 pobj nuclei,in
R1074 T8262 T8261 prep of,nuclei
R1075 T8328 T8326 acl called,structures
R1076 T8329 T8328 oprd chromocenters,called
R1077 T8263 T8264 nmod Chaf1a,embryos
R1078 T8330 T8331 punct [,20
R1079 T8331 T8328 parataxis 20,called
R1080 T8332 T8331 punct ],20
R1081 T8264 T8262 pobj embryos,of
R1082 T8333 T8326 punct ", ",structures
R1083 T8334 T8335 dep which,visualized
R1084 T8265 T8263 punct −,Chaf1a
R1085 T8335 T8326 relcl visualized,structures
R1086 T8266 T8263 punct /,Chaf1a
R1087 T8336 T8335 auxpass are,visualized
R1088 T8267 T8263 punct −,Chaf1a
R1089 T8337 T8335 prep as,visualized
R1090 T8338 T8339 npadvmod DAPI,dense
R1091 T8339 T8341 amod dense,foci
R1092 T8340 T8339 punct -,dense
R1093 T8341 T8337 pobj foci,as
R1094 T8342 T8343 punct (,1C
R1095 T8268 T8248 punct .,found
R1096 T8343 T8322 parataxis 1C,form
R1097 T8344 T8343 compound Figure,1C
R1098 T8345 T8343 punct ),1C
R1099 T8270 T8271 amod Pericentric,heterochromatin
R1100 T8346 T8306 punct .,cluster
R1101 T8348 T8349 det These,structures
R1102 T8349 T8350 nsubjpass structures,detected
R1103 T8271 T8272 nsubjpass heterochromatin,visualized
R1104 T8351 T8350 auxpass were,detected
R1105 T8352 T8350 neg not,detected
R1106 T8273 T8271 punct ", ",heterochromatin
R1107 T8353 T8350 prep in,detected
R1108 T8354 T8355 nmod Chaf1a,embryos
R1109 T8355 T8353 pobj embryos,in
R1110 T8356 T8354 punct −,Chaf1a
R1111 T8274 T8275 det the,component
R1112 T8357 T8354 punct /,Chaf1a
R1113 T8358 T8354 punct −,Chaf1a
R1114 T8359 T8360 punct (,1D
R1115 T8275 T8271 appos component,heterochromatin
R1116 T8360 T8350 parataxis 1D,detected
R1117 T8361 T8360 compound Figure,1D
R1118 T8362 T8360 punct ),1D
R1119 T8276 T8275 amod major,component
R1120 T8363 T8350 punct .,detected
R1121 T8365 T8366 mark Since,are
R1122 T8277 T8275 prep of,component
R1123 T8366 T8374 advcl are,decided
R1124 T8367 T8368 compound chromatin,architecture
R1125 T8368 T8366 nsubj architecture,are
R1126 T8278 T8279 amod constitutive,heterochromatin
R1127 T8369 T8368 cc and,architecture
R1128 T8370 T8371 amod higher,order
R1129 T8371 T8373 compound order,structures
R1130 T8372 T8371 punct -,order
R1131 T8279 T8277 pobj heterochromatin,of
R1132 T8373 T8368 conj structures,architecture
R1133 T8280 T8272 punct ", ",visualized
R1134 T8375 T8366 acomp important,are
R1135 T8376 T8375 prep for,important
R1136 T8377 T8378 compound genome,function
R1137 T8281 T8272 aux can,visualized
R1138 T8378 T8376 pobj function,for
R1139 T8379 T8380 punct [,21
R1140 T8282 T8272 advmod easily,visualized
R1141 T8380 T8366 parataxis 21,are
R1142 T8381 T8380 punct ],21
R1143 T8382 T8374 punct ", ",decided
R1144 T8383 T8374 nsubj we,decided
R1145 T8384 T8385 aux to,characterize
R1146 T8385 T8374 xcomp characterize,decided
R1147 T8283 T8272 auxpass be,visualized
R1148 T8386 T8387 det this,phenotype
R1149 T8387 T8385 dobj phenotype,characterize
R1150 T8388 T8385 prep in,characterize
R1151 T8284 T8272 prep in,visualized
R1152 T8389 T8390 amod more,detail
R1153 T8390 T8388 pobj detail,in
R1154 T8391 T8374 punct .,decided
R1155 T8285 T8286 compound interphase,nuclei
R1156 T8393 T8394 prep For,examined
R1157 T8286 T8284 pobj nuclei,in
R1158 T8395 T8396 det this,purpose
R1159 T8396 T8393 pobj purpose,For
R1160 T8397 T8394 punct ", ",examined
R1161 T8287 T8272 prep by,visualized
R1162 T8398 T8394 nsubj we,examined
R1163 T8399 T8400 det the,status
R1164 T8400 T8394 dobj status,examined
R1165 T8288 T8289 det the,DAPI
R1166 T8401 T8400 prep of,status
R1167 T8402 T8403 compound heterochromatin,organization
R1168 T8403 T8401 pobj organization,of
R1169 T8289 T8287 pobj DAPI,by
R1170 T8404 T8394 prep between,examined
R1171 T8405 T8406 det the,stages
R1172 T8406 T8404 pobj stages,between
R1173 T8407 T8408 nummod two,cell
R1174 T8290 T8289 compound fluorochrome,DAPI
R1175 T8408 T8406 nmod cell,stages
R1176 T8409 T8408 punct -,cell
R1177 T8410 T8408 cc and,cell
R1178 T8291 T8287 cc and,by
R1179 T8411 T8408 conj blastocyst,cell
R1180 T8412 T8394 punct .,examined
R1181 T8292 T8287 conj by,by
R1182 T8414 T8415 prep In,is
R1183 T8293 T8292 pcomp immunostaining,by
R1184 T8416 T8417 nummod two,cell
R1185 T8417 T8419 nmod cell,stage
R1186 T8294 T8293 prep with,immunostaining
R1187 T8418 T8417 punct -,cell
R1188 T8419 T8420 nmod stage,embryos
R1189 T8420 T8414 pobj embryos,In
R1190 T8295 T8294 pobj HP1α,with
R1191 T8421 T8422 amod wild,type
R1192 T8422 T8420 compound type,embryos
R1193 T8423 T8422 punct -,type
R1194 T8296 T8297 punct [,16
R1195 T8424 T8415 punct ", ",is
R1196 T8425 T8426 compound DAPI,staining
R1197 T8426 T8415 nsubj staining,is
R1198 T8297 T8272 parataxis 16,visualized
R1199 T8427 T8415 acomp diffuse,is
R1200 T8428 T8427 cc and,diffuse
R1201 T8429 T8427 conj fibrillar,diffuse
R1202 T8430 T8415 punct ", ",is
R1203 T8298 T8297 punct ",",16
R1204 T8431 T8415 prep with,is
R1205 T8432 T8431 pobj regions,with
R1206 T8299 T8297 appos 17,16
R1207 T8300 T8301 punct –,19
R1208 T8301 T8299 prep 19,17
R1209 T8302 T8297 punct ],16
R1210 T8433 T8432 prep of,regions
R1211 T8303 T8272 punct .,visualized
R1212 T8434 T8435 amod higher,density
R1213 T8435 T8433 pobj density,of
R1214 T8436 T8432 prep around,regions
R1215 T8305 T8306 prep In,cluster
R1216 T8437 T8438 det the,bodies
R1217 T8438 T8436 pobj bodies,around
R1218 T8439 T8440 amod nucleolar,precursor
R1219 T8307 T8308 amod wild,type
R1220 T8440 T8438 compound precursor,bodies
R1221 T8441 T8442 punct (,1E
R1222 T8442 T8415 parataxis 1E,is
R1223 T8443 T8442 compound Figure,1E
R1224 T8444 T8442 punct ),1E
R1225 T8308 T8310 compound type,blastocysts
R1226 T8445 T8415 punct .,is
R1227 T8447 T8448 compound Heterochromatin,domains
R1228 T8309 T8308 punct -,type
R1229 T8448 T8449 nsubjpass domains,assembled
R1230 T8310 T8305 pobj blastocysts,In
R1231 T8450 T8449 auxpass are,assembled
R1232 T8451 T8449 advmod progressively,assembled
R1233 T8452 T8449 prep into,assembled
R1234 T8311 T8305 cc and,In
R1235 T8453 T8454 npadvmod DAPI,dense
R1236 T8454 T8456 amod dense,foci
R1237 T8455 T8454 punct -,dense
R1238 T8456 T8452 pobj foci,into
R1239 T8312 T8305 conj in,In
R1240 T8457 T8449 prep between,assembled
R1241 T8458 T8459 det the,stages
R1242 T8313 T8314 nmod mouse,cells
R1243 T8459 T8457 pobj stages,between
R1244 T8460 T8461 nummod four,cell
R1245 T8461 T8459 nmod cell,stages
R1246 T8462 T8461 punct -,cell
R1247 T8463 T8461 cc and,cell
R1248 T8464 T8465 nummod 32,cell
R1249 T8314 T8312 pobj cells,in
R1250 T8465 T8461 conj cell,cell
R1251 T8466 T8465 punct -,cell
R1252 T8467 T8459 compound blastocyst,stages
R1253 T8468 T8469 punct (,1F
R1254 T8315 T8314 amod somatic,cells
R1255 T8469 T8449 parataxis 1F,assembled
R1256 T8470 T8469 compound Figure,1F
R1257 T8471 T8469 punct ),1F
R1258 T8472 T8449 punct .,assembled
R1259 T8316 T8306 punct ", ",cluster
R1260 T8474 T8475 nsubj Localization,confirmed
R1261 T8317 T8318 amod pericentric,domains
R1262 T8476 T8474 prep of,Localization
R1263 T8477 T8476 pobj HP1α,of
R1264 T8318 T8306 nsubj domains,cluster
R1265 T8478 T8479 mark that,correspond
R1266 T8479 T8475 ccomp correspond,confirmed
R1267 T8480 T8481 det the,structures
R1268 T8319 T8318 compound heterochromatin,domains
R1269 T8481 T8479 nsubj structures,correspond
R1270 T8482 T8481 acl visualized,structures
R1271 T8483 T8482 prep by,visualized
R1272 T8320 T8306 advmod together,cluster
R1273 T8484 T8485 compound DAPI,staining
R1274 T8485 T8483 pobj staining,by
R1275 T8486 T8479 prep to,correspond
R1276 T8321 T8306 cc and,cluster
R1277 T8487 T8488 amod constitutive,heterochromatin
R1278 T8488 T8486 pobj heterochromatin,to
R1279 T8489 T8490 punct (,1E
R1280 T8322 T8306 conj form,cluster
R1281 T8490 T8475 parataxis 1E,confirmed
R1282 T8491 T8490 compound Figure,1E
R1283 T8492 T8490 punct ),1E
R1284 T8323 T8324 amod higher,order
R1285 T8493 T8475 punct .,confirmed
R1286 T8495 T8496 advmod Thus,modified
R1287 T8324 T8326 compound order,structures
R1288 T8497 T8496 punct ", ",modified
R1289 T8498 T8499 det the,organization
R1290 T8325 T8324 punct -,order
R1291 T8499 T8496 nsubjpass organization,modified
R1292 T8500 T8499 amod nuclear,organization
R1293 T8501 T8499 prep of,organization
R1294 T8326 T8322 dobj structures,form
R1295 T8502 T8501 pobj heterochromatin,of
R1296 T8503 T8496 auxpass is,modified
R1297 T8504 T8496 advmod dramatically,modified
R1298 T8505 T8496 prep during,modified
R1299 T8506 T8507 amod pre-implantation,development
R1300 T8507 T8505 pobj development,during
R1301 T8327 T8326 compound chromatin,structures
R1302 T8508 T8496 punct ", ",modified
R1303 T8509 T8496 prep between,modified
R1304 T8510 T8511 det the,stages
R1305 T8538 T8534 conj 16,eight
R1306 T8511 T8509 pobj stages,between
R1307 T8512 T8513 nummod two,cell
R1308 T8513 T8511 nmod cell,stages
R1309 T8514 T8513 punct -,cell
R1310 T8515 T8513 cc and,cell
R1311 T8539 T8535 punct -,cell
R1312 T8516 T8513 conj blastocyst,cell
R1313 T8517 T8496 punct .,modified
R1314 T8540 T8520 punct ", ",were
R1315 T8519 T8520 prep In,were
R1316 T8521 T8522 nmod Chaf1a,embryos
R1317 T8541 T8542 npadvmod DAPI,dense
R1318 T8522 T8519 pobj embryos,In
R1319 T8523 T8521 punct −,Chaf1a
R1320 T8542 T8544 amod dense,foci
R1321 T8524 T8521 punct /,Chaf1a
R1322 T8525 T8521 punct −,Chaf1a
R1323 T8526 T8522 compound E4,embryos
R1324 T8543 T8542 punct -,dense
R1325 T8527 T8522 punct ", ",embryos
R1326 T8528 T8529 dep which,arrested
R1327 T8529 T8522 relcl arrested,embryos
R1328 T8544 T8520 nsubj foci,were
R1329 T8530 T8529 auxpass are,arrested
R1330 T8531 T8529 prep between,arrested
R1331 T8532 T8533 det the,stage
R1332 T8545 T8546 advmod barely,detectable
R1333 T8533 T8531 pobj stage,between
R1334 T8534 T8535 nummod eight,cell
R1335 T8535 T8533 compound cell,stage
R1336 T8546 T8520 acomp detectable,were
R1337 T8536 T8534 punct -,eight
R1338 T8537 T8534 cc and,eight
R1339 T8547 T8548 punct (,1D
R1340 T8548 T8520 parataxis 1D,were
R1341 T8549 T8548 compound Figure,1D
R1342 T8550 T8548 punct ),1D
R1343 T8643 T8642 punct -,type
R1344 T8551 T8520 punct .,were
R1345 T8644 T8645 punct (,compare
R1346 T8645 T8617 parataxis compare,is
R1347 T8553 T8554 advmod Instead,was
R1348 T8646 T8647 compound Figure,1D
R1349 T8647 T8645 dobj 1D,compare
R1350 T8648 T8647 cc and,1D
R1351 T8649 T8647 conj 1F,1D
R1352 T8650 T8645 punct ),compare
R1353 T8651 T8617 punct .,is
R1354 T8653 T8654 det These,data
R1355 T8654 T8655 nsubj data,evidence
R1356 T8656 T8657 det a,role
R1357 T8657 T8655 dobj role,evidence
R1358 T8555 T8554 punct ", ",was
R1359 T8658 T8657 amod key,role
R1360 T8659 T8657 prep for,role
R1361 T8660 T8659 pobj p150CAF,for
R1362 T8661 T8660 punct -,p150CAF
R1363 T8556 T8557 compound DAPI,staining
R1364 T8662 T8660 nummod 1,p150CAF
R1365 T8663 T8655 prep during,evidence
R1366 T8664 T8665 amod pre-implantation,development
R1367 T8665 T8663 pobj development,during
R1368 T8557 T8554 nsubj staining,was
R1369 T8666 T8655 punct ", ",evidence
R1370 T8667 T8655 cc and,evidence
R1371 T8668 T8655 conj reveal,evidence
R1372 T8558 T8554 acomp diffuse,was
R1373 T8669 T8670 mark that,required
R1374 T8670 T8668 ccomp required,reveal
R1375 T8671 T8672 det this,protein
R1376 T8559 T8554 prep within,was
R1377 T8672 T8670 nsubjpass protein,required
R1378 T8673 T8670 auxpass is,required
R1379 T8674 T8670 prep for,required
R1380 T8675 T8676 det the,organization
R1381 T8560 T8561 det the,nucleus
R1382 T8676 T8674 pobj organization,for
R1383 T8677 T8676 amod proper,organization
R1384 T8678 T8679 nummod 3,D
R1385 T8561 T8559 pobj nucleus,within
R1386 T8679 T8676 compound D,organization
R1387 T8680 T8679 punct -,D
R1388 T8681 T8676 prep of,organization
R1389 T8562 T8554 punct ", ",was
R1390 T8682 T8681 pobj heterochromatin,of
R1391 T8563 T8554 prep with,was
R1392 T8683 T8670 prep within,required
R1393 T8564 T8563 pobj regions,with
R1394 T8684 T8685 amod embryonic,nuclei
R1395 T8685 T8683 pobj nuclei,within
R1396 T8686 T8685 compound cell,nuclei
R1397 T8565 T8564 prep of,regions
R1398 T8687 T8655 punct .,evidence
R1399 T8689 T8690 advmod Next,wondered
R1400 T8566 T8567 amod higher,density
R1401 T8691 T8690 punct ", ",wondered
R1402 T8692 T8690 nsubj we,wondered
R1403 T8693 T8694 mark whether,observed
R1404 T8694 T8690 ccomp observed,wondered
R1405 T8695 T8696 det a,requirement
R1406 T8696 T8694 nsubjpass requirement,observed
R1407 T8567 T8565 pobj density,of
R1408 T8697 T8696 amod similar,requirement
R1409 T8698 T8696 prep for,requirement
R1410 T8568 T8567 prep around,density
R1411 T8699 T8698 pobj CAF,for
R1412 T8700 T8699 punct -,CAF
R1413 T8701 T8699 nummod 1,CAF
R1414 T8702 T8694 aux could,observed
R1415 T8569 T8570 det the,nucleoli
R1416 T8703 T8694 advmod also,observed
R1417 T8704 T8694 auxpass be,observed
R1418 T8705 T8694 prep in,observed
R1419 T8570 T8568 pobj nucleoli,around
R1420 T8706 T8707 compound ES,cells
R1421 T8707 T8705 pobj cells,in
R1422 T8708 T8707 punct ", ",cells
R1423 T8571 T8568 cc and,around
R1424 T8709 T8710 dep which,derived
R1425 T8710 T8707 relcl derived,cells
R1426 T8711 T8710 auxpass are,derived
R1427 T8712 T8710 prep from,derived
R1428 T8572 T8568 conj at,around
R1429 T8713 T8714 det the,mass
R1430 T8714 T8712 pobj mass,from
R1431 T8715 T8714 nmod blastocyst,mass
R1432 T8716 T8717 amod inner,cell
R1433 T8573 T8574 det the,periphery
R1434 T8717 T8714 compound cell,mass
R1435 T8718 T8690 punct .,wondered
R1436 T8574 T8572 pobj periphery,at
R1437 T8720 T8721 prep Given,derived
R1438 T8722 T8723 det the,arrest
R1439 T8575 T8574 prep of,periphery
R1440 T8723 T8720 pobj arrest,Given
R1441 T8724 T8723 amod early,arrest
R1442 T8725 T8723 amod developmental,arrest
R1443 T8576 T8577 det the,nuclei
R1444 T8726 T8723 acl observed,arrest
R1445 T8727 T8726 prep in,observed
R1446 T8728 T8729 nmod Chaf1a,embryos
R1447 T8577 T8575 pobj nuclei,of
R1448 T8729 T8727 pobj embryos,in
R1449 T8730 T8728 punct −,Chaf1a
R1450 T8731 T8728 punct /,Chaf1a
R1451 T8578 T8579 punct (,1D
R1452 T8732 T8728 punct −,Chaf1a
R1453 T8733 T8721 punct ", ",derived
R1454 T8734 T8735 amod such,cells
R1455 T8735 T8721 nsubjpass cells,derived
R1456 T8736 T8721 aux could,derived
R1457 T8737 T8721 neg not,derived
R1458 T8738 T8721 auxpass be,derived
R1459 T8579 T8554 parataxis 1D,was
R1460 T8739 T8721 advmod directly,derived
R1461 T8740 T8721 prep from,derived
R1462 T8741 T8742 amod null,embryos
R1463 T8580 T8579 compound Figure,1D
R1464 T8742 T8740 pobj embryos,from
R1465 T8743 T8721 punct ", ",derived
R1466 T8744 T8721 cc and,derived
R1467 T8581 T8579 punct ),1D
R1468 T8745 T8746 nsubj we,used
R1469 T8746 T8721 conj used,derived
R1470 T8747 T8746 advmod thus,used
R1471 T8748 T8749 det an,strategy
R1472 T8582 T8554 punct .,was
R1473 T8584 T8585 nsubj Localization,showed
R1474 T8586 T8584 prep of,Localization
R1475 T8749 T8746 dobj strategy,used
R1476 T8750 T8749 compound RNAi,strategy
R1477 T8751 T8752 punct (,2A
R1478 T8587 T8586 pobj HP1α,of
R1479 T8752 T8746 parataxis 2A,used
R1480 T8753 T8752 compound Figure,2A
R1481 T8754 T8752 punct ),2A
R1482 T8755 T8721 punct .,derived
R1483 T8588 T8589 det a,pattern
R1484 T8757 T8758 nmod p150CAF,knockdown
R1485 T8758 T8761 nsubjpass knockdown,quantified
R1486 T8589 T8585 dobj pattern,showed
R1487 T8759 T8757 punct -,p150CAF
R1488 T8760 T8757 nummod 1,p150CAF
R1489 T8590 T8589 amod diffuse,pattern
R1490 T8762 T8758 prep in,knockdown
R1491 T8763 T8764 compound ES,cells
R1492 T8764 T8762 pobj cells,in
R1493 T8591 T8589 amod similar,pattern
R1494 T8765 T8761 auxpass was,quantified
R1495 T8766 T8761 prep by,quantified
R1496 T8592 T8591 prep to,similar
R1497 T8767 T8768 compound Western,blot
R1498 T8768 T8769 compound blot,analysis
R1499 T8769 T8766 pobj analysis,by
R1500 T8593 T8594 det the,DAPI
R1501 T8594 T8592 pobj DAPI,to
R1502 T8770 T8769 cc and,analysis
R1503 T8595 T8589 punct ", ",pattern
R1504 T8771 T8769 conj IF,analysis
R1505 T8772 T8761 punct .,quantified
R1506 T8774 T8775 punct (,S1
R1507 T8776 T8775 compound Figure,S1
R1508 T8777 T8775 punct ),S1
R1509 T8596 T8589 prep with,pattern
R1510 T8778 T8775 punct .,S1
R1511 T8780 T8781 nmod p150CAF,cells
R1512 T8597 T8598 det some,enrichment
R1513 T8781 T8788 nsubj cells,displayed
R1514 T8782 T8780 punct -,p150CAF
R1515 T8598 T8596 pobj enrichment,with
R1516 T8783 T8780 nummod 1,p150CAF
R1517 T8784 T8785 npadvmod RNAi,depleted
R1518 T8785 T8781 amod depleted,cells
R1519 T8599 T8598 prep at,enrichment
R1520 T8786 T8785 punct -,depleted
R1521 T8787 T8781 compound ES,cells
R1522 T8600 T8601 det the,periphery
R1523 T8789 T8790 det a,phenotype
R1524 T8790 T8788 dobj phenotype,displayed
R1525 T8791 T8792 advmod very,similar
R1526 T8792 T8790 amod similar,phenotype
R1527 T8601 T8599 pobj periphery,at
R1528 T8793 T8792 prep to,similar
R1529 T8794 T8795 det the,cells
R1530 T8795 T8793 pobj cells,to
R1531 T8602 T8601 amod nuclear,periphery
R1532 T8796 T8795 prep of,cells
R1533 T8797 T8798 nmod Chaf1a,mice
R1534 T8798 T8796 pobj mice,of
R1535 T8799 T8797 punct −,Chaf1a
R1536 T8603 T8599 punct ", ",at
R1537 T8800 T8797 punct /,Chaf1a
R1538 T8801 T8797 punct −,Chaf1a
R1539 T8802 T8798 compound E4,mice
R1540 T8604 T8599 cc and,at
R1541 T8803 T8788 punct .,displayed
R1542 T8805 T8806 npadvmod DAPI,dense
R1543 T8605 T8599 conj around,at
R1544 T8806 T8808 amod dense,foci
R1545 T8807 T8806 punct -,dense
R1546 T8808 T8809 nsubjpass foci,lost
R1547 T8606 T8607 det the,nucleoli
R1548 T8810 T8809 auxpass were,lost
R1549 T8811 T8809 punct ", ",lost
R1550 T8812 T8809 cc and,lost
R1551 T8607 T8605 pobj nucleoli,around
R1552 T8813 T8814 nsubj we,observed
R1553 T8814 T8809 conj observed,lost
R1554 T8815 T8816 amod diffuse,staining
R1555 T8608 T8609 punct (,1D
R1556 T8816 T8814 dobj staining,observed
R1557 T8817 T8816 nmod HP1α,staining
R1558 T8818 T8817 cc and,HP1α
R1559 T8819 T8817 conj DAPI,HP1α
R1560 T8820 T8814 prep around,observed
R1561 T8821 T8822 det the,nucleoli
R1562 T8822 T8820 pobj nucleoli,around
R1563 T8609 T8585 parataxis 1D,showed
R1564 T8823 T8820 cc and,around
R1565 T8824 T8820 conj at,around
R1566 T8610 T8609 compound Figure,1D
R1567 T8825 T8826 det the,periphery
R1568 T8826 T8824 pobj periphery,at
R1569 T8827 T8826 prep of,periphery
R1570 T8828 T8829 det the,nucleus
R1571 T8829 T8827 pobj nucleus,of
R1572 T8611 T8609 punct ),1D
R1573 T8830 T8831 punct (,2B
R1574 T8831 T8814 parataxis 2B,observed
R1575 T8832 T8831 compound Figure,2B
R1576 T8612 T8585 punct .,showed
R1577 T8833 T8831 punct ),2B
R1578 T8834 T8814 punct .,observed
R1579 T8614 T8615 det This,organization
R1580 T8836 T8837 det This,result
R1581 T8837 T8838 nsubj result,indicates
R1582 T8839 T8840 mark that,is
R1583 T8615 T8617 nsubj organization,is
R1584 T8840 T8838 ccomp is,indicates
R1585 T8841 T8840 nsubj p150CAF,is
R1586 T8842 T8841 punct -,p150CAF
R1587 T8616 T8615 amod abnormal,organization
R1588 T8843 T8841 nummod 1,p150CAF
R1589 T8844 T8840 acomp essential,is
R1590 T8845 T8844 prep for,essential
R1591 T8618 T8615 prep of,organization
R1592 T8846 T8847 amod nuclear,organization
R1593 T8847 T8845 pobj organization,for
R1594 T8848 T8847 prep of,organization
R1595 T8849 T8848 pobj heterochromatin,of
R1596 T8619 T8618 pobj heterochromatin,of
R1597 T8850 T8849 prep in,heterochromatin
R1598 T8851 T8852 compound ES,cells
R1599 T8852 T8850 pobj cells,in
R1600 T8620 T8615 prep in,organization
R1601 T8853 T8847 prep in,organization
R1602 T8621 T8622 nmod Chaf1a,embryos
R1603 T8622 T8620 pobj embryos,in
R1604 T8854 T8855 det a,way
R1605 T8623 T8621 punct −,Chaf1a
R1606 T8855 T8853 pobj way,in
R1607 T8856 T8855 amod similar,way
R1608 T8857 T8855 prep to,way
R1609 T8624 T8621 punct /,Chaf1a
R1610 T8858 T8859 amod early,embryos
R1611 T8859 T8857 pobj embryos,to
R1612 T8860 T8859 amod pre-implantation,embryos
R1613 T8861 T8838 punct .,indicates
R1614 T8625 T8621 punct −,Chaf1a
R1615 T8863 T8864 advmod Surprisingly,observe
R1616 T8626 T8617 acomp reminiscent,is
R1617 T8865 T8864 punct ", ",observe
R1618 T8866 T8864 nsubj we,observe
R1619 T8867 T8864 aux did,observe
R1620 T8868 T8864 neg not,observe
R1621 T8627 T8626 prep of,reminiscent
R1622 T8869 T8870 det this,alteration
R1623 T8628 T8629 det the,organization
R1624 T8870 T8864 dobj alteration,observe
R1625 T8871 T8870 amod severe,alteration
R1626 T8872 T8870 prep in,alteration
R1627 T8873 T8874 compound heterochromatin,organization
R1628 T8629 T8627 pobj organization,of
R1629 T8874 T8872 pobj organization,in
R1630 T8875 T8864 prep in,observe
R1631 T8876 T8877 amod primary,fibroblasts
R1632 T8630 T8629 compound heterochromatin,organization
R1633 T8877 T8875 pobj fibroblasts,in
R1634 T8878 T8877 nmod mouse,fibroblasts
R1635 T8879 T8877 amod embryonic,fibroblasts
R1636 T8880 T8877 punct (,fibroblasts
R1637 T8631 T8629 acl found,organization
R1638 T8881 T8877 appos MEFs,fibroblasts
R1639 T8882 T8864 punct ),observe
R1640 T8883 T8864 prep following,observe
R1641 T8632 T8631 prep in,found
R1642 T8884 T8885 nmod p150CAF,depletion
R1643 T8885 T8883 pobj depletion,following
R1644 T8886 T8884 punct -,p150CAF
R1645 T8633 T8634 quantmod two,four
R1646 T8887 T8884 nummod 1,p150CAF
R1647 T8888 T8885 prep by,depletion
R1648 T8889 T8888 pobj RNAi,by
R1649 T8634 T8637 nummod four,cell
R1650 T8890 T8864 punct .,observe
R1651 T8892 T8893 nmod p150CAF,depletion
R1652 T8635 T8634 punct -,four
R1653 T8893 T8896 nsubj depletion,resulted
R1654 T8894 T8892 punct -,p150CAF
R1655 T8895 T8892 nummod 1,p150CAF
R1656 T8636 T8634 quantmod to,four
R1657 T8897 T8893 prep in,depletion
R1658 T8898 T8897 pobj MEFs,in
R1659 T8637 T8639 nmod cell,stage
R1660 T8899 T8896 prep in,resulted
R1661 T8900 T8901 det a,inhibition
R1662 T8901 T8899 pobj inhibition,in
R1663 T8902 T8901 amod strong,inhibition
R1664 T8903 T8901 prep of,inhibition
R1665 T8904 T8905 compound cell,proliferation
R1666 T8905 T8903 pobj proliferation,of
R1667 T8638 T8637 punct -,cell
R1668 T8906 T8907 punct (,data
R1669 T8907 T8896 meta data,resulted
R1670 T8908 T8907 amod unpublished,data
R1671 T8909 T8907 punct ),data
R1672 T8639 T8640 nmod stage,embryos
R1673 T8910 T8896 punct ", ",resulted
R1674 T8911 T8896 cc but,resulted
R1675 T8912 T8913 aux did,alter
R1676 T8913 T8896 conj alter,resulted
R1677 T8640 T8632 pobj embryos,in
R1678 T8914 T8913 neg not,alter
R1679 T8915 T8916 det the,clustering
R1680 T8916 T8913 dobj clustering,alter
R1681 T8641 T8642 amod wild,type
R1682 T8917 T8916 prep of,clustering
R1683 T8918 T8919 compound heterochromatin,domains
R1684 T8919 T8917 pobj domains,of
R1685 T8642 T8640 compound type,embryos
R1686 T8920 T8921 punct (,2C
R1687 T8921 T8913 parataxis 2C,alter
R1688 T8922 T8921 compound Figures,2C
R1689 T8959 T8957 pobj embryo,in
R1690 T8923 T8921 cc and,2C
R1691 T8924 T8921 conj S2,2C
R1692 T8925 T8921 punct ),2C
R1693 T8926 T8896 punct .,resulted
R1694 T8928 T8929 advmod Similarly,affect
R1695 T8960 T8959 amod early,embryo
R1696 T8930 T8929 punct ", ",affect
R1697 T8931 T8932 nmod p150CAF,depletion
R1698 T8961 T8959 cc and,embryo
R1699 T8932 T8929 nsubj depletion,affect
R1700 T8933 T8931 punct -,p150CAF
R1701 T8962 T8963 compound ES,cells
R1702 T8934 T8931 nummod 1,p150CAF
R1703 T8935 T8932 prep in,depletion
R1704 T8936 T8937 compound 3T3,cells
R1705 T8937 T8935 pobj cells,in
R1706 T8963 T8959 conj cells,embryo
R1707 T8938 T8929 aux did,affect
R1708 T8939 T8929 neg not,affect
R1709 T8940 T8941 compound heterochromatin,organization
R1710 T8964 T8949 punct .,reveal
R1711 T8941 T8929 dobj organization,affect
R1712 T8942 T8943 punct [,16
R1713 T8943 T8929 parataxis 16,affect
R1714 T8944 T8943 punct ],16
R1715 T8945 T8929 punct .,affect
R1716 T8966 T8967 nsubj We,wondered
R1717 T8947 T8948 det These,observations
R1718 T8948 T8949 nsubj observations,reveal
R1719 T8950 T8951 det a,function
R1720 T8968 T8967 advmod also,wondered
R1721 T8951 T8949 dobj function,reveal
R1722 T8952 T8951 amod specific,function
R1723 T8953 T8951 prep for,function
R1724 T8954 T8953 pobj CAF,for
R1725 T8955 T8954 punct -,CAF
R1726 T8956 T8954 nummod 1,CAF
R1727 T8969 T8970 mark whether,affects
R1728 T8957 T8951 prep in,function
R1729 T8958 T8959 det the,embryo
R1730 T8970 T8967 advcl affects,wondered
R1731 T8971 T8970 nsubj loss,affects
R1732 T8972 T8971 prep of,loss
R1733 T8973 T8972 pobj p150CAF,of
R1734 T9065 T9064 compound Figure,2D
R1735 T8974 T8973 punct -,p150CAF
R1736 T9066 T9064 punct ),2D
R1737 T9067 T9038 punct .,detect
R1738 T8975 T8973 nummod 1,p150CAF
R1739 T9069 T9070 det These,data
R1740 T9070 T9071 nsubj data,show
R1741 T8976 T8971 prep in,loss
R1742 T9072 T9073 mark that,altered
R1743 T9073 T9071 ccomp altered,show
R1744 T8977 T8978 compound ES,cells
R1745 T9074 T9075 amod nuclear,architecture
R1746 T9075 T9073 nsubjpass architecture,altered
R1747 T9076 T9073 auxpass is,altered
R1748 T8978 T8976 pobj cells,in
R1749 T9077 T9073 neg not,altered
R1750 T9078 T9073 advmod globally,altered
R1751 T8979 T8970 advmod specifically,affects
R1752 T9079 T9073 prep following,altered
R1753 T9080 T9079 pobj CAF,following
R1754 T9081 T9080 punct -,CAF
R1755 T8980 T8981 det the,subcompartment
R1756 T9082 T9080 nummod 1,CAF
R1757 T9083 T9080 appos loss,CAF
R1758 T9084 T9083 punct -,loss
R1759 T8981 T8970 dobj subcompartment,affects
R1760 T9085 T9083 prep of,loss
R1761 T9086 T9085 punct -,of
R1762 T9087 T9085 pobj function,of
R1763 T8982 T8981 nmod heterochromatin,subcompartment
R1764 T9088 T9071 punct .,show
R1765 T9090 T9091 prep In,revealed
R1766 T9092 T9090 pobj addition,In
R1767 T9093 T9091 punct ", ",revealed
R1768 T9094 T9095 compound Western,blot
R1769 T8983 T8981 amod nuclear,subcompartment
R1770 T9095 T9096 compound blot,analysis
R1771 T9096 T9091 nsubj analysis,revealed
R1772 T9097 T9098 mark that,result
R1773 T8984 T8970 punct ", ",affects
R1774 T9098 T9091 ccomp result,revealed
R1775 T9099 T9100 nmod CAF,depletion
R1776 T9100 T9098 nsubj depletion,result
R1777 T8985 T8970 cc or,affects
R1778 T9101 T9099 punct -,CAF
R1779 T9102 T9099 nummod 1,CAF
R1780 T9103 T9098 aux did,result
R1781 T8986 T8987 mark whether,result
R1782 T9104 T9098 neg not,result
R1783 T9105 T9098 prep in,result
R1784 T9106 T9107 amod altered,levels
R1785 T8987 T8970 conj result,affects
R1786 T9107 T9105 pobj levels,in
R1787 T9108 T9107 prep of,levels
R1788 T9109 T9110 nmod chromatin,proteins
R1789 T8988 T8987 nsubj it,result
R1790 T9110 T9108 pobj proteins,of
R1791 T9111 T9110 amod architectural,proteins
R1792 T9112 T9113 amod such,as
R1793 T9113 T9110 prep as,proteins
R1794 T8989 T8987 aux might,result
R1795 T9114 T9115 compound histone,H3
R1796 T9115 T9113 pobj H3,as
R1797 T9116 T9115 cc and,H3
R1798 T8990 T8987 prep in,result
R1799 T9117 T9115 conj HP1α,H3
R1800 T9118 T9119 punct (,S1
R1801 T8991 T8992 det a,loss
R1802 T9119 T9091 parataxis S1,revealed
R1803 T8992 T8990 pobj loss,in
R1804 T9120 T9119 compound Figure,S1
R1805 T9121 T9119 punct ),S1
R1806 T9122 T9091 punct .,revealed
R1807 T8993 T8994 advmod more,global
R1808 T9124 T9125 advmod Thus,required
R1809 T8994 T8992 amod global,loss
R1810 T9126 T9125 punct ", ",required
R1811 T9127 T9125 nsubjpass CAF,required
R1812 T8995 T8992 prep of,loss
R1813 T9128 T9127 punct -,CAF
R1814 T9129 T9127 nummod 1,CAF
R1815 T9130 T9125 auxpass is,required
R1816 T8996 T8997 amod nuclear,organization
R1817 T9131 T9125 advmod specifically,required
R1818 T9132 T9125 prep in,required
R1819 T9133 T9134 amod early,embryos
R1820 T9134 T9132 pobj embryos,in
R1821 T9135 T9132 cc and,in
R1822 T9136 T9132 conj in,in
R1823 T8997 T8995 pobj organization,of
R1824 T9137 T9138 compound ES,cells
R1825 T9138 T9136 pobj cells,in
R1826 T9139 T9125 prep for,required
R1827 T8998 T8997 cc and,organization
R1828 T9140 T9141 det the,organization
R1829 T9141 T9139 pobj organization,for
R1830 T9142 T9141 amod proper,organization
R1831 T8999 T8997 conj architecture,organization
R1832 T9143 T9141 prep of,organization
R1833 T9144 T9145 det the,compartment
R1834 T9145 T9143 pobj compartment,of
R1835 T9000 T8967 punct .,wondered
R1836 T9146 T9145 nmod heterochromatin,compartment
R1837 T9147 T9145 amod subnuclear,compartment
R1838 T9148 T9125 punct .,required
R1839 T9002 T9003 nsubj We,used
R1840 T9150 T9151 amod Previous,studies
R1841 T9151 T9152 nsubj studies,showed
R1842 T9004 T9005 det a,antibody
R1843 T9153 T9151 acl performed,studies
R1844 T9154 T9153 prep in,performed
R1845 T9155 T9156 amod mammalian,lines
R1846 T9156 T9154 pobj lines,in
R1847 T9157 T9156 compound cell,lines
R1848 T9005 T9003 dobj antibody,used
R1849 T9158 T9159 mark that,required
R1850 T9159 T9152 ccomp required,showed
R1851 T9160 T9161 nmod CAF,activity
R1852 T9161 T9159 nsubjpass activity,required
R1853 T9006 T9005 amod specific,antibody
R1854 T9162 T9160 punct -,CAF
R1855 T9163 T9160 nummod 1,CAF
R1856 T9164 T9159 auxpass is,required
R1857 T9007 T9005 prep against,antibody
R1858 T9165 T9159 prep for,required
R1859 T9166 T9167 compound S,phase
R1860 T9008 T9009 det the,protein
R1861 T9167 T9168 compound phase,progression
R1862 T9168 T9165 pobj progression,for
R1863 T9169 T9170 punct [,24
R1864 T9009 T9007 pobj protein,against
R1865 T9170 T9152 parataxis 24,showed
R1866 T9010 T9011 amod promyelocytic,leukemia
R1867 T9011 T9009 nmod leukemia,protein
R1868 T9171 T9170 nummod 16,24
R1869 T9172 T9170 punct ",",24
R1870 T9173 T9170 nummod 23,24
R1871 T9174 T9170 punct ",",24
R1872 T9175 T9170 punct ],24
R1873 T9012 T9011 punct (,leukemia
R1874 T9176 T9152 punct .,showed
R1875 T9178 T9179 nsubj We,show
R1876 T9013 T9011 appos PML,leukemia
R1877 T9180 T9179 advmod here,show
R1878 T9181 T9182 mark that,appear
R1879 T9014 T9009 punct ),protein
R1880 T9015 T9016 aux to,study
R1881 T9182 T9179 ccomp appear,show
R1882 T9183 T9184 nummod 3,d
R1883 T9184 T9185 npadvmod d,after
R1884 T9016 T9003 advcl study,used
R1885 T9185 T9182 prep after,appear
R1886 T9186 T9185 pobj transfection,after
R1887 T9017 T9018 det the,fate
R1888 T9187 T9186 prep of,transfection
R1889 T9188 T9189 det the,vector
R1890 T9189 T9187 pobj vector,of
R1891 T9018 T9016 dobj fate,study
R1892 T9190 T9189 compound RNAi,vector
R1893 T9191 T9182 punct ", ",appear
R1894 T9192 T9193 npadvmod p150CAF,depleted
R1895 T9019 T9018 prep of,fate
R1896 T9193 T9197 amod depleted,cells
R1897 T9194 T9192 punct -,p150CAF
R1898 T9195 T9192 nummod 1,p150CAF
R1899 T9020 T9021 det the,bodies
R1900 T9196 T9193 punct -,depleted
R1901 T9197 T9182 nsubj cells,appear
R1902 T9198 T9197 punct (,cells
R1903 T9021 T9019 pobj bodies,of
R1904 T9199 T9197 acl identified,cells
R1905 T9200 T9199 agent by,identified
R1906 T9201 T9202 det a,absence
R1907 T9022 T9021 nmod PML,bodies
R1908 T9202 T9200 pobj absence,by
R1909 T9203 T9202 amod complete,absence
R1910 T9204 T9202 prep of,absence
R1911 T9023 T9021 amod nuclear,bodies
R1912 T9205 T9206 nmod CAF,signal
R1913 T9206 T9204 pobj signal,of
R1914 T9207 T9205 punct -,CAF
R1915 T9024 T9021 punct ", ",bodies
R1916 T9208 T9205 nummod 1,CAF
R1917 T9209 T9206 compound IF,signal
R1918 T9210 T9197 punct ),cells
R1919 T9025 T9026 dep which,are
R1920 T9211 T9212 advmod still,active
R1921 T9212 T9182 oprd active,appear
R1922 T9213 T9212 prep for,active
R1923 T9214 T9213 pobj replication,for
R1924 T9215 T9182 punct ", ",appear
R1925 T9216 T9217 mark as,revealed
R1926 T9026 T9021 relcl are,bodies
R1927 T9217 T9182 advcl revealed,appear
R1928 T9218 T9217 agent by,revealed
R1929 T9219 T9218 pobj incorporation,by
R1930 T9027 T9028 advmod well,characterized
R1931 T9220 T9219 prep of,incorporation
R1932 T9221 T9222 det the,analog
R1933 T9028 T9030 amod characterized,structures
R1934 T9222 T9220 pobj analog,of
R1935 T9223 T9222 compound thymidine,analog
R1936 T9224 T9222 appos bromodeoxyuridine,analog
R1937 T9225 T9224 punct (,bromodeoxyuridine
R1938 T9029 T9028 punct -,characterized
R1939 T9226 T9224 appos BrdU,bromodeoxyuridine
R1940 T9227 T9219 punct ),incorporation
R1941 T9228 T9229 punct (,3A
R1942 T9030 T9026 attr structures,are
R1943 T9229 T9219 parataxis 3A,incorporation
R1944 T9230 T9229 compound Figure,3A
R1945 T9031 T9030 amod subnuclear,structures
R1946 T9231 T9229 punct ),3A
R1947 T9232 T9219 punct ", ",incorporation
R1948 T9233 T9234 det the,pattern
R1949 T9032 T9033 punct [,22
R1950 T9234 T9219 conj pattern,incorporation
R1951 T9235 T9234 nmod PCNA,pattern
R1952 T9236 T9235 punct (,PCNA
R1953 T9033 T9003 parataxis 22,used
R1954 T9237 T9238 amod proliferating,antigen
R1955 T9238 T9235 appos antigen,PCNA
R1956 T9239 T9238 nmod cell,antigen
R1957 T9034 T9033 punct ],22
R1958 T9240 T9238 amod nuclear,antigen
R1959 T9241 T9234 punct ),pattern
R1960 T9242 T9243 punct (,3B
R1961 T9035 T9003 punct .,used
R1962 T9243 T9234 parataxis 3B,pattern
R1963 T9244 T9243 compound Figure,3B
R1964 T9245 T9243 punct ),3B
R1965 T9246 T9234 punct ", ",pattern
R1966 T9037 T9038 nsubj We,detect
R1967 T9247 T9234 cc and,pattern
R1968 T9248 T9249 compound flow,analysis
R1969 T9249 T9234 conj analysis,pattern
R1970 T9250 T9249 compound cytometry,analysis
R1971 T9039 T9038 aux could,detect
R1972 T9251 T9252 punct (,3C
R1973 T9252 T9249 parataxis 3C,analysis
R1974 T9253 T9252 compound Figure,3C
R1975 T9254 T9252 punct ),3C
R1976 T9255 T9179 punct .,show
R1977 T9257 T9258 advmod Hence,persists
R1978 T9259 T9258 punct ", ",persists
R1979 T9040 T9038 neg not,detect
R1980 T9260 T9258 prep in,persists
R1981 T9261 T9262 det these,cells
R1982 T9262 T9260 pobj cells,in
R1983 T9263 T9258 punct ", ",persists
R1984 T9041 T9042 det any,difference
R1985 T9264 T9265 compound DNA,replication
R1986 T9265 T9258 nsubj replication,persists
R1987 T9266 T9258 prep despite,persists
R1988 T9042 T9038 dobj difference,detect
R1989 T9267 T9268 det the,changes
R1990 T9268 T9266 pobj changes,despite
R1991 T9269 T9268 amod drastic,changes
R1992 T9043 T9042 amod significant,difference
R1993 T9270 T9268 prep in,changes
R1994 T9271 T9272 compound heterochromatin,organization
R1995 T9272 T9270 pobj organization,in
R1996 T9044 T9042 prep in,difference
R1997 T9273 T9258 punct .,persists
R1998 T9275 T9276 advmod However,cease
R1999 T9045 T9046 det the,distribution
R2000 T9046 T9044 pobj distribution,in
R2001 T9047 T9046 cc and,distribution
R2002 T9277 T9276 punct ", ",cease
R2003 T9048 T9046 conj aspect,distribution
R2004 T9278 T9279 nummod 24,h
R2005 T9279 T9280 npadvmod h,later
R2006 T9280 T9276 advmod later,cease
R2007 T9049 T9046 prep of,distribution
R2008 T9281 T9276 punct ", ",cease
R2009 T9282 T9283 compound ES,cells
R2010 T9283 T9276 nsubj cells,cease
R2011 T9284 T9285 aux to,proliferate
R2012 T9050 T9051 nmod PML,bodies
R2013 T9285 T9276 xcomp proliferate,cease
R2014 T9286 T9276 cc and,cease
R2015 T9051 T9049 pobj bodies,of
R2016 T9287 T9276 conj die,cease
R2017 T9288 T9276 punct ", ",cease
R2018 T9289 T9276 advcl revealing,cease
R2019 T9290 T9291 mark that,required
R2020 T9052 T9051 amod nuclear,bodies
R2021 T9053 T9051 prep between,bodies
R2022 T9291 T9289 ccomp required,revealing
R2023 T9292 T9291 nsubjpass p150CAF,required
R2024 T9054 T9055 nmod control,cells
R2025 T9293 T9292 punct -,p150CAF
R2026 T9294 T9292 nummod 1,p150CAF
R2027 T9295 T9291 auxpass is,required
R2028 T9296 T9291 prep for,required
R2029 T9297 T9298 det an,process
R2030 T9298 T9296 pobj process,for
R2031 T9299 T9298 amod essential,process
R2032 T9055 T9053 pobj cells,between
R2033 T9300 T9298 amod cellular,process
R2034 T9301 T9291 punct ", ",required
R2035 T9302 T9291 prep as,required
R2036 T9056 T9054 cc and,control
R2037 T9303 T9302 prep in,as
R2038 T9304 T9303 pobj embryos,in
R2039 T9305 T9276 punct .,cease
R2040 T9057 T9058 npadvmod p150CAF,depleted
R2041 T9307 T9308 advmod Altogether,demonstrate
R2042 T9058 T9054 conj depleted,control
R2043 T9309 T9308 punct ", ",demonstrate
R2044 T9310 T9311 poss our,data
R2045 T9059 T9057 punct -,p150CAF
R2046 T9311 T9308 nsubj data,demonstrate
R2047 T9312 T9313 mark that,alters
R2048 T9313 T9308 ccomp alters,demonstrate
R2049 T9060 T9057 nummod 1,p150CAF
R2050 T9314 T9313 nsubj loss,alters
R2051 T9315 T9314 prep of,loss
R2052 T9316 T9317 nmod p150CAF,function
R2053 T9061 T9058 punct -,depleted
R2054 T9317 T9315 pobj function,of
R2055 T9318 T9316 punct -,p150CAF
R2056 T9319 T9316 nummod 1,p150CAF
R2057 T9062 T9055 compound ES,cells
R2058 T9320 T9314 prep in,loss
R2059 T9321 T9322 compound ES,cells
R2060 T9322 T9320 pobj cells,in
R2061 T9063 T9064 punct (,2D
R2062 T9323 T9322 cc and,cells
R2063 T9324 T9325 amod early,embryos
R2064 T9325 T9322 conj embryos,cells
R2065 T9064 T9038 parataxis 2D,detect
R2066 T9326 T9313 advmod first,alters
R2067 T9327 T9328 det the,organization
R2068 T9328 T9313 dobj organization,alters
R2069 T9382 T9379 amod chromosomal,regions
R2070 T9329 T9328 prep of,organization
R2071 T9330 T9329 pobj heterochromatin,of
R2072 T9331 T9328 prep in,organization
R2073 T9332 T9333 det the,nucleus
R2074 T9333 T9331 pobj nucleus,in
R2075 T9334 T9313 cc and,alters
R2076 T9383 T9379 punct ", ",regions
R2077 T9335 T9313 punct ", ",alters
R2078 T9336 T9337 prep in,cycle
R2079 T9337 T9313 conj cycle,alters
R2080 T9338 T9339 det a,step
R2081 T9339 T9336 pobj step,in
R2082 T9340 T9339 amod subsequent,step
R2083 T9341 T9337 punct ", ",cycle
R2084 T9342 T9337 compound cell,cycle
R2085 T9384 T9385 dep which,composed
R2086 T9343 T9337 cc and,cycle
R2087 T9344 T9337 conj viability,cycle
R2088 T9345 T9308 punct .,demonstrate
R2089 T9385 T9379 relcl composed,regions
R2090 T9347 T9348 prep In,performed
R2091 T9349 T9347 pobj order,In
R2092 T9350 T9351 aux to,characterize
R2093 T9386 T9385 prep in,composed
R2094 T9351 T9349 acl characterize,order
R2095 T9352 T9351 advmod better,characterize
R2096 T9353 T9354 det the,defects
R2097 T9387 T9386 pobj mouse,in
R2098 T9354 T9351 dobj defects,characterize
R2099 T9355 T9354 prep in,defects
R2100 T9388 T9385 auxpass are,composed
R2101 T9389 T9385 advmod mainly,composed
R2102 T9356 T9357 compound heterochromatin,organization
R2103 T9390 T9385 prep of,composed
R2104 T9357 T9355 pobj organization,in
R2105 T9358 T9348 punct ", ",performed
R2106 T9359 T9348 nsubj we,performed
R2107 T9391 T9392 amod large,blocks
R2108 T9360 T9361 nummod two,color
R2109 T9361 T9363 nmod color,experiments
R2110 T9362 T9361 punct -,color
R2111 T9392 T9390 pobj blocks,of
R2112 T9363 T9348 dobj experiments,performed
R2113 T9364 T9363 nmod DNA,experiments
R2114 T9365 T9366 nmod fluorescence,hybridization
R2115 T9393 T9392 prep of,blocks
R2116 T9366 T9363 nmod hybridization,experiments
R2117 T9367 T9368 advmod in,situ
R2118 T9368 T9366 amod situ,hybridization
R2119 T9369 T9366 punct (,hybridization
R2120 T9394 T9395 amod major,repeats
R2121 T9370 T9366 appos FISH,hybridization
R2122 T9371 T9363 punct ),experiments
R2123 T9372 T9373 aux to,reveal
R2124 T9395 T9393 pobj repeats,of
R2125 T9373 T9348 advcl reveal,performed
R2126 T9374 T9375 det the,distribution
R2127 T9396 T9394 cc and,major
R2128 T9375 T9373 dobj distribution,reveal
R2129 T9376 T9375 amod spatial,distribution
R2130 T9377 T9375 prep of,distribution
R2131 T9378 T9379 amod pericentric,regions
R2132 T9397 T9394 conj minor,major
R2133 T9379 T9377 pobj regions,of
R2134 T9380 T9378 cc and,pericentric
R2135 T9381 T9378 conj centric,pericentric
R2136 T9398 T9395 compound satellite,repeats
R2137 T9399 T9385 punct ", ",composed
R2138 T9400 T9385 advmod respectively,composed
R2139 T9401 T9402 punct [,20
R2140 T9488 T9486 punct ),4B
R2141 T9489 T9459 punct .,observed
R2142 T9402 T9348 parataxis 20,performed
R2143 T9491 T9492 amod Individual,domains
R2144 T9403 T9402 punct ],20
R2145 T9492 T9494 nsubjpass domains,found
R2146 T9493 T9492 amod pericentric,domains
R2147 T9404 T9348 punct .,performed
R2148 T9495 T9492 prep from,domains
R2149 T9496 T9497 amod single,chromosomes
R2150 T9497 T9495 pobj chromosomes,from
R2151 T9498 T9494 auxpass are,found
R2152 T9406 T9407 amod Pericentric,domains
R2153 T9499 T9494 advmod now,found
R2154 T9500 T9501 preconj either,isolated
R2155 T9501 T9494 oprd isolated,found
R2156 T9502 T9501 cc or,isolated
R2157 T9407 T9408 nsubj domains,form
R2158 T9503 T9501 conj aggregated,isolated
R2159 T9504 T9501 prep in,isolated
R2160 T9409 T9407 prep from,domains
R2161 T9505 T9506 det a,pattern
R2162 T9506 T9504 pobj pattern,in
R2163 T9507 T9508 advmod less,dense
R2164 T9508 T9506 amod dense,pattern
R2165 T9410 T9411 amod different,chromosomes
R2166 T9509 T9508 prep than,dense
R2167 T9510 T9511 det the,clusters
R2168 T9511 T9509 pobj clusters,than
R2169 T9411 T9409 pobj chromosomes,from
R2170 T9512 T9511 amod regular,clusters
R2171 T9513 T9511 acl observed,clusters
R2172 T9514 T9513 prep in,observed
R2173 T9412 T9408 dobj clusters,form
R2174 T9515 T9516 compound control,cells
R2175 T9516 T9514 pobj cells,in
R2176 T9517 T9518 punct (,4B
R2177 T9413 T9412 punct ", ",clusters
R2178 T9518 T9494 parataxis 4B,found
R2179 T9519 T9518 compound Figure,4B
R2180 T9520 T9518 punct ),4B
R2181 T9521 T9494 punct .,found
R2182 T9523 T9524 amod Such,aggregates
R2183 T9414 T9415 dep which,revealed
R2184 T9524 T9525 nsubjpass aggregates,revealed
R2185 T9526 T9524 punct ", ",aggregates
R2186 T9415 T9412 relcl revealed,clusters
R2187 T9527 T9528 dep which,found
R2188 T9528 T9524 relcl found,aggregates
R2189 T9529 T9528 auxpass are,found
R2190 T9416 T9415 auxpass are,revealed
R2191 T9530 T9528 advmod often,found
R2192 T9531 T9528 prep at,found
R2193 T9532 T9533 det the,periphery
R2194 T9417 T9415 prep by,revealed
R2195 T9533 T9531 pobj periphery,at
R2196 T9534 T9533 amod nuclear,periphery
R2197 T9535 T9525 punct ", ",revealed
R2198 T9418 T9417 pobj FISH,by
R2199 T9536 T9525 auxpass are,revealed
R2200 T9537 T9525 advmod also,revealed
R2201 T9538 T9525 prep by,revealed
R2202 T9419 T9415 prep as,revealed
R2203 T9539 T9540 compound DAPI,staining
R2204 T9540 T9538 pobj staining,by
R2205 T9541 T9525 prep as,revealed
R2206 T9420 T9421 amod large,spots
R2207 T9542 T9543 det a,signature
R2208 T9543 T9541 pobj signature,as
R2209 T9544 T9543 amod typical,signature
R2210 T9421 T9419 pobj spots,as
R2211 T9545 T9543 prep of,signature
R2212 T9546 T9545 pobj p150CAF,of
R2213 T9547 T9546 punct -,p150CAF
R2214 T9422 T9423 dep that,coincide
R2215 T9548 T9546 nummod 1,p150CAF
R2216 T9423 T9421 relcl coincide,spots
R2217 T9549 T9546 appos loss,p150CAF
R2218 T9550 T9549 punct -,loss
R2219 T9424 T9423 prep with,coincide
R2220 T9551 T9549 prep of,loss
R2221 T9552 T9551 punct -,of
R2222 T9425 T9426 npadvmod DAPI,dense
R2223 T9553 T9551 pobj function,of
R2224 T9554 T9525 punct .,revealed
R2225 T9556 T9557 nsubj Quantification,revealed
R2226 T9426 T9428 amod dense,foci
R2227 T9558 T9556 prep of,Quantification
R2228 T9559 T9558 pobj fluorescence,of
R2229 T9427 T9426 punct -,dense
R2230 T9560 T9556 prep along,Quantification
R2231 T9561 T9562 det a,line
R2232 T9428 T9424 pobj foci,with
R2233 T9562 T9560 pobj line,along
R2234 T9563 T9564 advmod randomly,drawn
R2235 T9564 T9562 acl drawn,line
R2236 T9565 T9564 prep across,drawn
R2237 T9566 T9567 det the,nucleus
R2238 T9567 T9565 pobj nucleus,across
R2239 T9568 T9569 amod lower,intensity
R2240 T9429 T9423 prep in,coincide
R2241 T9569 T9557 dobj intensity,revealed
R2242 T9570 T9569 compound fluorescence,intensity
R2243 T9571 T9569 cc and,intensity
R2244 T9430 T9431 det the,nucleus
R2245 T9572 T9573 det a,distribution
R2246 T9573 T9569 conj distribution,intensity
R2247 T9574 T9573 amod broader,distribution
R2248 T9431 T9429 pobj nucleus,in
R2249 T9575 T9573 prep of,distribution
R2250 T9576 T9575 pobj DAPI,of
R2251 T9577 T9576 cc and,DAPI
R2252 T9578 T9579 amod major,signals
R2253 T9432 T9431 compound interphase,nucleus
R2254 T9579 T9576 conj signals,DAPI
R2255 T9580 T9579 compound satellite,signals
R2256 T9433 T9434 punct (,4A
R2257 T9581 T9579 compound hybridization,signals
R2258 T9582 T9557 prep in,revealed
R2259 T9583 T9584 npadvmod p150CAF,depleted
R2260 T9584 T9588 amod depleted,cells
R2261 T9434 T9423 parataxis 4A,coincide
R2262 T9585 T9583 punct -,p150CAF
R2263 T9586 T9583 nummod 1,p150CAF
R2264 T9587 T9584 punct -,depleted
R2265 T9435 T9434 compound Figure,4A
R2266 T9588 T9582 pobj cells,in
R2267 T9589 T9590 punct (,4C
R2268 T9590 T9557 parataxis 4C,revealed
R2269 T9436 T9434 punct ),4A
R2270 T9591 T9590 compound Figure,4C
R2271 T9592 T9590 cc and,4C
R2272 T9593 T9590 conj 4D,4C
R2273 T9437 T9408 punct .,form
R2274 T9439 T9440 prep At,form
R2275 T9594 T9590 punct ),4C
R2276 T9441 T9442 det the,periphery
R2277 T9595 T9557 punct ", ",revealed
R2278 T9596 T9557 advcl indicating,revealed
R2279 T9597 T9596 dobj decondensation,indicating
R2280 T9598 T9597 prep of,decondensation
R2281 T9442 T9439 pobj periphery,At
R2282 T9599 T9600 amod pericentric,domains
R2283 T9600 T9598 pobj domains,of
R2284 T9601 T9600 compound heterochromatin,domains
R2285 T9602 T9557 punct .,revealed
R2286 T9604 T9605 prep In,showed
R2287 T9443 T9442 prep of,periphery
R2288 T9606 T9604 pobj contrast,In
R2289 T9607 T9605 punct ", ",showed
R2290 T9608 T9609 amod centric,domains
R2291 T9444 T9445 det each,domain
R2292 T9609 T9605 nsubj domains,showed
R2293 T9610 T9611 det an,intensity
R2294 T9445 T9443 pobj domain,of
R2295 T9611 T9605 dobj intensity,showed
R2296 T9612 T9611 cc and,intensity
R2297 T9613 T9611 conj shape,intensity
R2298 T9446 T9445 amod pericentric,domain
R2299 T9614 T9611 amod similar,intensity
R2300 T9615 T9614 prep to,similar
R2301 T9616 T9617 compound control,cells
R2302 T9447 T9440 punct ", ",form
R2303 T9617 T9615 pobj cells,to
R2304 T9618 T9605 punct ", ",showed
R2305 T9619 T9605 advcl suggesting,showed
R2306 T9448 T9449 amod centric,regions
R2307 T9620 T9621 mark that,remain
R2308 T9621 T9619 ccomp remain,suggesting
R2309 T9622 T9621 nsubj they,remain
R2310 T9449 T9440 nsubj regions,form
R2311 T9623 T9621 acomp unaffected,remain
R2312 T9624 T9623 prep by,unaffected
R2313 T9625 T9626 nmod p150CAF,depletion
R2314 T9450 T9451 amod individual,entities
R2315 T9626 T9624 pobj depletion,by
R2316 T9627 T9625 punct -,p150CAF
R2317 T9628 T9625 nummod 1,p150CAF
R2318 T9451 T9440 dobj entities,form
R2319 T9629 T9630 punct (,4C
R2320 T9630 T9605 parataxis 4C,showed
R2321 T9631 T9630 compound Figure,4C
R2322 T9452 T9453 punct (,4A
R2323 T9632 T9630 cc and,4C
R2324 T9453 T9440 parataxis 4A,form
R2325 T9633 T9630 conj 4D,4C
R2326 T9634 T9630 punct ),4C
R2327 T9635 T9605 punct .,showed
R2328 T9454 T9453 compound Figure,4A
R2329 T9637 T9638 prep In,show
R2330 T9455 T9453 punct ),4A
R2331 T9639 T9637 pobj conclusion,In
R2332 T9640 T9638 punct ", ",show
R2333 T9641 T9642 det these,results
R2334 T9642 T9638 nsubj results,show
R2335 T9456 T9440 punct .,form
R2336 T9643 T9644 mark that,required
R2337 T9644 T9638 ccomp required,show
R2338 T9645 T9644 nsubjpass p150CAF,required
R2339 T9646 T9645 punct -,p150CAF
R2340 T9647 T9645 nummod 1,p150CAF
R2341 T9458 T9459 prep In,observed
R2342 T9648 T9644 auxpass is,required
R2343 T9649 T9644 prep for,required
R2344 T9650 T9651 det the,condensation
R2345 T9651 T9649 pobj condensation,for
R2346 T9652 T9651 amod proper,condensation
R2347 T9460 T9461 nmod p150CAF,cells
R2348 T9653 T9651 cc and,condensation
R2349 T9654 T9651 conj clustering,condensation
R2350 T9655 T9651 prep of,condensation
R2351 T9656 T9657 amod pericentric,domains
R2352 T9461 T9458 pobj cells,In
R2353 T9657 T9655 pobj domains,of
R2354 T9658 T9657 compound heterochromatin,domains
R2355 T9462 T9460 punct -,p150CAF
R2356 T9659 T9638 punct .,show
R2357 T9661 T9662 prep Given,wondered
R2358 T9463 T9460 nummod 1,p150CAF
R2359 T9663 T9664 det the,role
R2360 T9664 T9661 pobj role,Given
R2361 T9464 T9465 npadvmod RNAi,depleted
R2362 T9665 T9664 amod known,role
R2363 T9666 T9664 prep of,role
R2364 T9667 T9666 pobj CAF,of
R2365 T9465 T9461 amod depleted,cells
R2366 T9668 T9667 punct -,CAF
R2367 T9669 T9667 nummod 1,CAF
R2368 T9670 T9664 prep in,role
R2369 T9466 T9465 punct -,depleted
R2370 T9671 T9672 det the,deposition
R2371 T9672 T9670 pobj deposition,in
R2372 T9673 T9672 prep of,deposition
R2373 T9674 T9675 compound histone,H3.1
R2374 T9467 T9459 punct ", ",observed
R2375 T9675 T9673 pobj H3.1,of
R2376 T9676 T9675 cc and,H3.1
R2377 T9677 T9675 conj H4,H3.1
R2378 T9468 T9459 nsubj we,observed
R2379 T9678 T9675 acl associated,H3.1
R2380 T9679 T9678 prep with,associated
R2381 T9680 T9681 compound DNA,synthesis
R2382 T9469 T9470 det a,disruption
R2383 T9681 T9679 pobj synthesis,with
R2384 T9682 T9683 punct [,12
R2385 T9683 T9664 parataxis 12,role
R2386 T9470 T9459 dobj disruption,observed
R2387 T9684 T9683 nummod 11,12
R2388 T9685 T9683 punct ",",12
R2389 T9686 T9683 punct ],12
R2390 T9687 T9662 punct ", ",wondered
R2391 T9688 T9662 nsubj we,wondered
R2392 T9689 T9690 mark whether,reflect
R2393 T9690 T9662 ccomp reflect,wondered
R2394 T9691 T9692 det this,defect
R2395 T9471 T9470 prep of,disruption
R2396 T9692 T9690 nsubj defect,reflect
R2397 T9693 T9692 prep in,defect
R2398 T9694 T9695 amod higher,order
R2399 T9472 T9473 amod pericentric,clusters
R2400 T9695 T9697 compound order,organization
R2401 T9696 T9695 punct -,order
R2402 T9697 T9693 pobj organization,in
R2403 T9698 T9697 compound chromatin,organization
R2404 T9473 T9471 pobj clusters,of
R2405 T9699 T9690 aux could,reflect
R2406 T9474 T9473 compound heterochromatin,clusters
R2407 T9475 T9476 dep that,coincides
R2408 T9476 T9470 relcl coincides,disruption
R2409 T9477 T9476 prep with,coincides
R2410 T9700 T9701 det an,organization
R2411 T9701 T9690 dobj organization,reflect
R2412 T9478 T9479 det the,disappearance
R2413 T9702 T9701 amod aberrant,organization
R2414 T9703 T9701 amod nucleosomal,organization
R2415 T9704 T9662 punct .,wondered
R2416 T9479 T9477 pobj disappearance,with
R2417 T9706 T9707 advcl Using,observe
R2418 T9480 T9479 prep of,disappearance
R2419 T9708 T9706 dobj DNase,Using
R2420 T9709 T9708 nummod I,DNase
R2421 T9481 T9482 npadvmod DAPI,dense
R2422 T9710 T9708 cc and,DNase
R2423 T9711 T9712 amod micrococcal,nuclease
R2424 T9712 T9713 nmod nuclease,assays
R2425 T9482 T9484 amod dense,foci
R2426 T9713 T9708 conj assays,DNase
R2427 T9714 T9712 punct (,nuclease
R2428 T9715 T9712 appos MNase,nuclease
R2429 T9483 T9482 punct -,dense
R2430 T9716 T9713 punct ),assays
R2431 T9717 T9707 punct ", ",observe
R2432 T9718 T9707 nsubj we,observe
R2433 T9484 T9480 pobj foci,of
R2434 T9719 T9707 aux could,observe
R2435 T9485 T9486 punct (,4B
R2436 T9720 T9707 neg not,observe
R2437 T9486 T9459 parataxis 4B,observed
R2438 T9721 T9722 det any,difference
R2439 T9722 T9707 dobj difference,observe
R2440 T9723 T9722 amod significant,difference
R2441 T9724 T9722 prep between,difference
R2442 T9725 T9726 nmod control,cells
R2443 T9487 T9486 compound Figure,4B
R2444 T9726 T9724 pobj cells,between
R2445 T9727 T9725 cc and,control
R2446 T9728 T9729 npadvmod p150CAF,depleted
R2447 T9729 T9725 conj depleted,control
R2448 T9806 T9807 det all,conditions
R2449 T9730 T9728 punct -,p150CAF
R2450 T9731 T9728 nummod 1,p150CAF
R2451 T9732 T9729 punct -,depleted
R2452 T9733 T9726 compound ES,cells
R2453 T9734 T9707 prep at,observe
R2454 T9735 T9736 det the,level
R2455 T9807 T9804 pobj conditions,In
R2456 T9736 T9734 pobj level,at
R2457 T9737 T9736 prep of,level
R2458 T9738 T9739 compound bulk,chromatin
R2459 T9739 T9737 pobj chromatin,of
R2460 T9808 T9805 punct ", ",was
R2461 T9740 T9739 compound genome,chromatin
R2462 T9741 T9734 cc or,at
R2463 T9809 T9810 det the,amount
R2464 T9742 T9734 conj at,at
R2465 T9810 T9805 nsubj amount,was
R2466 T9743 T9744 amod pericentric,repeats
R2467 T9744 T9742 pobj repeats,at
R2468 T9811 T9810 prep of,amount
R2469 T9745 T9746 punct (,Figure
R2470 T9746 T9707 parataxis Figure,observe
R2471 T9747 T9746 nummod 5,Figure
R2472 T9748 T9746 punct ),Figure
R2473 T9812 T9813 compound histone,H3
R2474 T9749 T9707 punct .,observe
R2475 T9751 T9752 prep In,compared
R2476 T9813 T9811 pobj H3,of
R2477 T9753 T9754 det a,series
R2478 T9814 T9810 acl remaining,amount
R2479 T9754 T9751 pobj series,In
R2480 T9755 T9754 amod second,series
R2481 T9756 T9754 prep of,series
R2482 T9815 T9810 acl associated,amount
R2483 T9757 T9756 pobj experiments,of
R2484 T9758 T9752 punct ", ",compared
R2485 T9759 T9752 nsubj we,compared
R2486 T9816 T9815 prep with,associated
R2487 T9760 T9761 det the,association
R2488 T9761 T9752 dobj association,compared
R2489 T9762 T9761 prep of,association
R2490 T9763 T9764 compound histone,H3
R2491 T9764 T9762 pobj H3,of
R2492 T9817 T9816 pobj chromatin,with
R2493 T9765 T9752 prep with,compared
R2494 T9766 T9765 pobj chromatin,with
R2495 T9767 T9752 prep in,compared
R2496 T9768 T9767 pobj nuclei,in
R2497 T9769 T9768 acl isolated,nuclei
R2498 T9770 T9769 prep from,isolated
R2499 T9771 T9770 pobj cells,from
R2500 T9772 T9771 acl transfected,cells
R2501 T9818 T9805 acomp indistinguishable,was
R2502 T9773 T9772 prep with,transfected
R2503 T9774 T9775 nmod control,vectors
R2504 T9775 T9773 pobj vectors,with
R2505 T9776 T9774 cc and,control
R2506 T9819 T9805 prep in,was
R2507 T9777 T9774 conj p150CAF,control
R2508 T9778 T9777 punct -,p150CAF
R2509 T9779 T9777 nummod 1,p150CAF
R2510 T9820 T9821 nmod control,cells
R2511 T9780 T9775 compound RNAi,vectors
R2512 T9781 T9775 compound plasmid,vectors
R2513 T9782 T9752 punct .,compared
R2514 T9821 T9819 pobj cells,in
R2515 T9784 T9785 nsubjpass Nuclei,incubated
R2516 T9786 T9785 auxpass were,incubated
R2517 T9822 T9820 cc and,control
R2518 T9787 T9785 prep in,incubated
R2519 T9788 T9787 pobj buffers,in
R2520 T9823 T9824 npadvmod p150CAF,depleted
R2521 T9789 T9788 prep with,buffers
R2522 T9790 T9791 amod different,concentrations
R2523 T9791 T9789 pobj concentrations,with
R2524 T9824 T9820 conj depleted,control
R2525 T9792 T9791 compound salt,concentrations
R2526 T9793 T9791 acl ranging,concentrations
R2527 T9794 T9793 prep from,ranging
R2528 T9795 T9796 nummod 100,mM
R2529 T9825 T9823 punct -,p150CAF
R2530 T9796 T9797 compound mM,NaCl
R2531 T9797 T9794 pobj NaCl,from
R2532 T9798 T9794 prep to,from
R2533 T9826 T9823 nummod 1,p150CAF
R2534 T9799 T9800 nummod 1,M
R2535 T9800 T9801 compound M,NaCl
R2536 T9801 T9798 pobj NaCl,to
R2537 T9802 T9785 punct .,incubated
R2538 T9827 T9824 punct -,depleted
R2539 T9804 T9805 prep In,was
R2540 T9828 T9821 compound ES,cells
R2541 T9829 T9830 punct (,data
R2542 T9830 T9805 meta data,was
R2543 T9831 T9830 amod unpublished,data
R2544 T9912 T9909 parataxis 25,methylation
R2545 T9913 T9912 punct ],25
R2546 T9914 T9906 prep at,tested
R2547 T9915 T9916 amod major,repeats
R2548 T9832 T9830 punct ),data
R2549 T9916 T9914 pobj repeats,at
R2550 T9917 T9916 compound satellite,repeats
R2551 T9918 T9906 cc and,tested
R2552 T9919 T9906 conj found,tested
R2553 T9833 T9805 punct .,was
R2554 T9920 T9921 det no,difference
R2555 T9921 T9919 dobj difference,found
R2556 T9922 T9921 amod significant,difference
R2557 T9923 T9921 prep between,difference
R2558 T9835 T9836 advmod Therefore,are
R2559 T9924 T9925 nmod control,cells
R2560 T9925 T9923 pobj cells,between
R2561 T9926 T9924 cc and,control
R2562 T9927 T9928 npadvmod p150CAF,depleted
R2563 T9928 T9924 conj depleted,control
R2564 T9837 T9836 punct ", ",are
R2565 T9929 T9927 punct -,p150CAF
R2566 T9930 T9927 nummod 1,p150CAF
R2567 T9931 T9928 punct -,depleted
R2568 T9932 T9933 punct (,Figure
R2569 T9838 T9839 det the,loss
R2570 T9933 T9919 parataxis Figure,found
R2571 T9934 T9933 nummod 6,Figure
R2572 T9935 T9933 punct ),Figure
R2573 T9839 T9836 nsubj loss,are
R2574 T9936 T9906 punct .,tested
R2575 T9938 T9939 mark As,is
R2576 T9840 T9839 prep of,loss
R2577 T9939 T9952 advcl is,reduced
R2578 T9940 T9941 det the,line
R2579 T9941 T9939 nsubj line,is
R2580 T9841 T9840 pobj clustering,of
R2581 T9942 T9941 compound LTM7,line
R2582 T9943 T9941 compound ES,line
R2583 T9944 T9941 compound cell,line
R2584 T9842 T9839 cc and,loss
R2585 T9945 T9946 dep that,used
R2586 T9946 T9941 relcl used,line
R2587 T9947 T9946 nsubj we,used
R2588 T9948 T9946 prep in,used
R2589 T9843 T9839 conj decondensation,loss
R2590 T9949 T9950 poss our,experiments
R2591 T9950 T9948 pobj experiments,in
R2592 T9951 T9950 compound RNAi,experiments
R2593 T9844 T9843 prep of,decondensation
R2594 T9953 T9954 det a,line
R2595 T9954 T9939 attr line,is
R2596 T9845 T9846 amod pericentric,heterochromatin
R2597 T9955 T9954 amod female,line
R2598 T9956 T9957 punct (,XX
R2599 T9957 T9955 parataxis XX,female
R2600 T9958 T9957 punct ),XX
R2601 T9959 T9954 compound cell,line
R2602 T9960 T9952 punct ", ",reduced
R2603 T9961 T9962 compound DNA,methylation
R2604 T9962 T9952 nsubjpass methylation,reduced
R2605 T9846 T9844 pobj heterochromatin,of
R2606 T9963 T9952 auxpass is,reduced
R2607 T9964 T9952 advmod globally,reduced
R2608 T9965 T9952 prep in,reduced
R2609 T9847 T9836 acomp unlikely,are
R2610 T9966 T9967 det these,cells
R2611 T9967 T9965 pobj cells,in
R2612 T9968 T9969 punct [,26
R2613 T9969 T9952 parataxis 26,reduced
R2614 T9848 T9849 aux to,be
R2615 T9970 T9969 punct ],26
R2616 T9971 T9952 punct .,reduced
R2617 T9849 T9847 xcomp be,unlikely
R2618 T9973 T9974 aux To,rule
R2619 T9974 T9975 advcl rule,tested
R2620 T9976 T9974 prt out,rule
R2621 T9977 T9978 det the,possibility
R2622 T9978 T9974 dobj possibility,rule
R2623 T9979 T9980 mark that,contribute
R2624 T9850 T9851 det the,consequence
R2625 T9851 T9849 attr consequence,be
R2626 T9980 T9978 acl contribute,possibility
R2627 T9981 T9980 nsubj hypomethylation,contribute
R2628 T9982 T9981 prep of,hypomethylation
R2629 T9983 T9984 amod pericentric,repeats
R2630 T9852 T9851 prep of,consequence
R2631 T9984 T9982 pobj repeats,of
R2632 T9985 T9980 aux might,contribute
R2633 T9986 T9980 prep to,contribute
R2634 T9987 T9988 det the,destabilization
R2635 T9853 T9854 amod severe,defects
R2636 T9988 T9986 pobj destabilization,to
R2637 T9989 T9988 prep of,destabilization
R2638 T9990 T9991 compound heterochromatin,domains
R2639 T9854 T9852 pobj defects,of
R2640 T9991 T9989 pobj domains,of
R2641 T9992 T9980 prep in,contribute
R2642 T9993 T9994 npadvmod p150CAF,depleted
R2643 T9994 T9998 amod depleted,cells
R2644 T9995 T9993 punct -,p150CAF
R2645 T9855 T9854 prep in,defects
R2646 T9996 T9993 nummod 1,p150CAF
R2647 T9997 T9994 punct -,depleted
R2648 T9998 T9992 pobj cells,in
R2649 T9999 T9998 compound ES,cells
R2650 T10000 T9975 punct ", ",tested
R2651 T10001 T9975 nsubj we,tested
R2652 T10002 T10003 poss our,vector
R2653 T10003 T9975 dobj vector,tested
R2654 T9856 T9857 amod nucleosomal,organization
R2655 T10004 T10003 compound RNAi,vector
R2656 T10005 T10003 compound plasmid,vector
R2657 T10006 T9975 prep in,tested
R2658 T10007 T10008 det a,line
R2659 T9857 T9855 pobj organization,in
R2660 T10008 T10006 pobj line,in
R2661 T10009 T10008 compound XY,line
R2662 T10010 T10008 compound ES,line
R2663 T9858 T9836 punct .,are
R2664 T10011 T10008 compound cell,line
R2665 T10012 T9975 punct ", ",tested
R2666 T10013 T9975 cc and,tested
R2667 T9860 T9861 poss Our,findings
R2668 T10014 T9975 conj confirmed,tested
R2669 T10015 T10016 mark that,leads
R2670 T10016 T10014 ccomp leads,confirmed
R2671 T9861 T9862 nsubj findings,showed
R2672 T9863 T9864 mark that,altered
R2673 T10017 T10016 nsubj loss,leads
R2674 T10018 T10017 prep of,loss
R2675 T10019 T10018 pobj p150CAF,of
R2676 T9864 T9862 ccomp altered,showed
R2677 T10020 T10019 punct -,p150CAF
R2678 T10021 T10019 nummod 1,p150CAF
R2679 T10022 T10016 prep to,leads
R2680 T10023 T10022 pobj disruption,to
R2681 T9865 T9866 det the,localization
R2682 T10024 T10023 prep of,disruption
R2683 T10025 T10026 compound heterochromatin,organization
R2684 T10026 T10024 pobj organization,of
R2685 T9866 T9864 nsubjpass localization,altered
R2686 T10027 T10016 advmod independently,leads
R2687 T10028 T10027 prep of,independently
R2688 T10029 T10030 det the,degree
R2689 T9867 T9866 amod nuclear,localization
R2690 T10030 T10028 pobj degree,of
R2691 T10031 T10030 prep of,degree
R2692 T10032 T10033 compound DNA,methylation
R2693 T10033 T10031 pobj methylation,of
R2694 T10034 T10030 prep at,degree
R2695 T9868 T9866 prep of,localization
R2696 T10035 T10036 amod pericentric,repeats
R2697 T10036 T10034 pobj repeats,at
R2698 T10037 T10038 punct (,data
R2699 T10038 T10014 meta data,confirmed
R2700 T10039 T10038 amod unpublished,data
R2701 T10040 T10038 punct ),data
R2702 T10041 T9975 punct .,tested
R2703 T10043 T10044 nsubj We,analyzed
R2704 T9869 T9868 pobj HP1α,of
R2705 T10045 T10044 advmod next,analyzed
R2706 T10046 T10047 amod specific,modifications
R2707 T10047 T10044 dobj modifications,analyzed
R2708 T10048 T10047 compound histone,modifications
R2709 T10049 T10050 punct [,27
R2710 T9870 T9864 auxpass is,altered
R2711 T10050 T10047 parataxis 27,modifications
R2712 T10051 T10050 punct ],27
R2713 T10052 T10044 prep in,analyzed
R2714 T9871 T9864 advmod severely,altered
R2715 T10053 T10054 nmod chromatin,immunoprecipitation
R2716 T10054 T10055 nmod immunoprecipitation,experiments
R2717 T10055 T10052 pobj experiments,in
R2718 T9872 T9864 prep in,altered
R2719 T10056 T10054 punct (,immunoprecipitation
R2720 T10057 T10054 appos ChIP,immunoprecipitation
R2721 T10058 T10055 punct ),experiments
R2722 T10059 T10055 acl using,experiments
R2723 T9873 T9874 nmod Chaf1a,embryos
R2724 T10060 T10061 amod native,chromatin
R2725 T10061 T10059 dobj chromatin,using
R2726 T9874 T9872 pobj embryos,in
R2727 T10062 T10063 punct [,28
R2728 T10063 T10044 parataxis 28,analyzed
R2729 T9875 T9873 punct −,Chaf1a
R2730 T10064 T10063 punct ],28
R2731 T9876 T9873 punct /,Chaf1a
R2732 T10065 T10044 punct .,analyzed
R2733 T10067 T10068 nsubj We,found
R2734 T9877 T9873 punct −,Chaf1a
R2735 T10069 T10070 mark that,immunoprecipitated
R2736 T10070 T10068 ccomp immunoprecipitated,found
R2737 T9878 T9874 cc and,embryos
R2738 T10071 T10072 amod pericentric,DNA
R2739 T10072 T10070 nsubjpass DNA,immunoprecipitated
R2740 T10073 T10070 auxpass was,immunoprecipitated
R2741 T10074 T10070 prep with,immunoprecipitated
R2742 T9879 T9880 npadvmod p150CAF,depleted
R2743 T10075 T10076 det a,efficiency
R2744 T10076 T10074 pobj efficiency,with
R2745 T9880 T9884 amod depleted,cells
R2746 T10077 T10078 npadvmod 2,lower
R2747 T10078 T10076 amod lower,efficiency
R2748 T10079 T10077 punct -,2
R2749 T10080 T10077 advmod fold,2
R2750 T9881 T9879 punct -,p150CAF
R2751 T10081 T10070 prep with,immunoprecipitated
R2752 T10082 T10083 nmod H4K20me3,antibodies
R2753 T10083 T10081 pobj antibodies,with
R2754 T10084 T10085 punct [,30
R2755 T10085 T10082 parataxis 30,H4K20me3
R2756 T10086 T10085 nummod 29,30
R2757 T10087 T10085 punct ",",30
R2758 T9882 T9879 nummod 1,p150CAF
R2759 T10088 T10085 punct ],30
R2760 T10089 T10070 prep following,immunoprecipitated
R2761 T10090 T10091 nmod p150CAF,depletion
R2762 T9883 T9880 punct -,depleted
R2763 T10091 T10089 pobj depletion,following
R2764 T10092 T10090 punct -,p150CAF
R2765 T10093 T10090 nummod 1,p150CAF
R2766 T9884 T9874 conj cells,embryos
R2767 T10094 T10095 punct (,7A
R2768 T10095 T10068 parataxis 7A,found
R2769 T10096 T10095 compound Figure,7A
R2770 T10097 T10095 cc and,7A
R2771 T9885 T9884 compound ES,cells
R2772 T10098 T10095 conj 7B,7A
R2773 T10099 T10095 punct ),7A
R2774 T10100 T10068 punct .,found
R2775 T9886 T9862 punct .,showed
R2776 T10102 T10103 nsubjpass Immunoprecipitation,affected
R2777 T10104 T10102 prep of,Immunoprecipitation
R2778 T9888 T9889 nsubj We,examined
R2779 T10105 T10106 amod minor,repeats
R2780 T10106 T10104 pobj repeats,of
R2781 T10107 T10106 compound satellite,repeats
R2782 T10108 T10102 prep in,Immunoprecipitation
R2783 T10109 T10110 det the,experiment
R2784 T9890 T9889 advmod therefore,examined
R2785 T10110 T10108 pobj experiment,in
R2786 T10111 T10110 amod same,experiment
R2787 T10112 T10103 auxpass was,affected
R2788 T10113 T10103 advmod less,affected
R2789 T10114 T10115 punct (,7B
R2790 T9891 T9892 det the,status
R2791 T10115 T10103 parataxis 7B,affected
R2792 T10116 T10115 compound Figure,7B
R2793 T10117 T10115 punct ),7B
R2794 T9892 T9889 dobj status,examined
R2795 T10118 T10103 punct ", ",affected
R2796 T10119 T10103 advcl showing,affected
R2797 T10120 T10121 mark that,affects
R2798 T9893 T9892 prep of,status
R2799 T10121 T10119 ccomp affects,showing
R2800 T9894 T9895 amod other,marks
R2801 T9895 T9893 pobj marks,of
R2802 T9896 T9895 amod epigenetic,marks
R2803 T10122 T10121 nsubj loss,affects
R2804 T10123 T10122 prep of,loss
R2805 T10124 T10125 nmod p150CAF,function
R2806 T10125 T10123 pobj function,of
R2807 T10126 T10124 punct -,p150CAF
R2808 T9897 T9898 advmod previously,shown
R2809 T10127 T10124 nummod 1,p150CAF
R2810 T10128 T10121 advmod mainly,affects
R2811 T10129 T10121 dobj H4K20me3,affects
R2812 T10130 T10129 prep at,H4K20me3
R2813 T9898 T9895 acl shown,marks
R2814 T10131 T10132 amod pericentric,heterochromatin
R2815 T9899 T9900 aux to,characterize
R2816 T10132 T10130 pobj heterochromatin,at
R2817 T9900 T9898 xcomp characterize,shown
R2818 T10133 T10103 punct .,affected
R2819 T9901 T9902 amod pericentric,heterochromatin
R2820 T10135 T10136 advmod Moreover,detected
R2821 T9902 T9900 dobj heterochromatin,characterize
R2822 T10137 T10136 punct ", ",detected
R2823 T10138 T10139 det no,difference
R2824 T9903 T9889 punct .,examined
R2825 T10139 T10136 nsubjpass difference,detected
R2826 T10140 T10139 amod significant,difference
R2827 T10141 T10139 prep in,difference
R2828 T9905 T9906 nsubj We,tested
R2829 T10142 T10143 compound immunoprecipitation,efficiency
R2830 T10143 T10141 pobj efficiency,in
R2831 T10144 T10136 auxpass was,detected
R2832 T10145 T10136 prep at,detected
R2833 T9907 T9906 advmod first,tested
R2834 T10146 T10147 amod intracisternal,particle
R2835 T10147 T10149 nmod particle,elements
R2836 T10148 T10147 nmod A,particle
R2837 T9908 T9909 compound DNA,methylation
R2838 T10149 T10145 pobj elements,at
R2839 T10150 T10147 punct (,particle
R2840 T9909 T9906 dobj methylation,tested
R2841 T10151 T10147 appos IAP,particle
R2842 T10152 T10149 punct ),elements
R2843 T10153 T10154 punct (,7B
R2844 T9910 T9909 compound CpG,methylation
R2845 T10154 T10149 parataxis 7B,elements
R2846 T10155 T10154 compound Figure,7B
R2847 T10156 T10154 punct ),7B
R2848 T9911 T9912 punct [,25
R2849 T10157 T10149 punct ", ",elements
R2850 T10158 T10159 dep which,are
R2851 T10159 T10149 relcl are,elements
R2852 T10227 T10224 conj 7B,7A
R2853 T10160 T10161 amod noncentromeric,elements
R2854 T10161 T10159 attr elements,are
R2855 T10162 T10161 amod repeated,elements
R2856 T10163 T10161 compound DNA,elements
R2857 T10164 T10165 advmod also,enriched
R2858 T10165 T10161 acl enriched,elements
R2859 T10166 T10165 prep in,enriched
R2860 T10167 T10166 pobj H4K20me3,in
R2861 T10168 T10169 punct [,31
R2862 T10228 T10224 punct ),7A
R2863 T10169 T10136 parataxis 31,detected
R2864 T10170 T10169 punct ],31
R2865 T10171 T10136 punct .,detected
R2866 T10229 T10201 punct .,reduced
R2867 T10173 T10174 det This,result
R2868 T10174 T10175 nsubj result,shows
R2869 T10231 T10232 prep In,are
R2870 T10176 T10177 mark that,contributes
R2871 T10177 T10175 ccomp contributes,shows
R2872 T10178 T10177 nsubj p150CAF,contributes
R2873 T10179 T10178 punct -,p150CAF
R2874 T10233 T10234 amod wild,type
R2875 T10180 T10178 nummod 1,p150CAF
R2876 T10181 T10177 prep to,contributes
R2877 T10182 T10183 amod normal,levels
R2878 T10183 T10181 pobj levels,to
R2879 T10234 T10236 compound type,cells
R2880 T10184 T10183 prep of,levels
R2881 T10185 T10184 pobj H4K20me3,of
R2882 T10186 T10177 prep at,contributes
R2883 T10235 T10234 punct -,type
R2884 T10187 T10188 amod pericentric,heterochromatin
R2885 T10188 T10186 pobj heterochromatin,at
R2886 T10189 T10177 punct ", ",contributes
R2887 T10190 T10177 cc but,contributes
R2888 T10236 T10231 pobj cells,In
R2889 T10191 T10192 neg not,necessarily
R2890 T10192 T10177 conj necessarily,contributes
R2891 T10237 T10232 punct ", ",are
R2892 T10193 T10192 prep at,necessarily
R2893 T10194 T10195 amod other,loci
R2894 T10195 T10193 pobj loci,at
R2895 T10238 T10232 nsubj most,are
R2896 T10196 T10175 punct .,shows
R2897 T10198 T10199 det The,mark
R2898 T10199 T10201 nsubjpass mark,reduced
R2899 T10200 T10199 compound H3K9me3,mark
R2900 T10239 T10238 prep of,most
R2901 T10202 T10203 punct [,32
R2902 T10203 T10199 parataxis 32,mark
R2903 T10240 T10241 nmod H4K20me3,signals
R2904 T10204 T10203 punct ],32
R2905 T10205 T10201 auxpass was,reduced
R2906 T10206 T10201 advmod also,reduced
R2907 T10241 T10239 pobj signals,of
R2908 T10207 T10201 advmod significantly,reduced
R2909 T10208 T10201 prep in,reduced
R2910 T10209 T10210 npadvmod p150CAF,depleted
R2911 T10210 T10214 amod depleted,cells
R2912 T10211 T10209 punct -,p150CAF
R2913 T10212 T10209 nummod 1,p150CAF
R2914 T10213 T10210 punct -,depleted
R2915 T10242 T10240 cc and,H4K20me3
R2916 T10214 T10208 pobj cells,in
R2917 T10215 T10201 punct ", ",reduced
R2918 T10216 T10217 mark though,to
R2919 T10217 T10201 advcl to,reduced
R2920 T10243 T10240 conj H3K9me3,H4K20me3
R2921 T10218 T10219 det a,extent
R2922 T10219 T10217 pobj extent,to
R2923 T10220 T10219 amod lesser,extent
R2924 T10244 T10232 acomp present,are
R2925 T10221 T10219 prep than,extent
R2926 T10222 T10221 pobj H4K20me3,than
R2927 T10223 T10224 punct (,7A
R2928 T10245 T10232 prep at,are
R2929 T10224 T10201 parataxis 7A,reduced
R2930 T10225 T10224 compound Figure,7A
R2931 T10226 T10224 cc and,7A
R2932 T10246 T10247 det the,level
R2933 T10247 T10245 pobj level,at
R2934 T10248 T10247 prep of,level
R2935 T10249 T10250 npadvmod DAPI,dense
R2937 T10250 T10252 amod dense,domains
R2939 T10251 T10250 punct -,dense
R2943 T10252 T10248 pobj domains,of
R2946 T10253 T10254 advmod when,visualized
R2950 T10254 T10232 advcl visualized,are
R2955 T10255 T10254 prep by,visualized
R2958 T10256 T10255 pobj IF,by
R2965 T10257 T10258 punct [,29
R2969 T10258 T10254 parataxis 29,visualized
R2972 T10361 T10362 compound ES,cells
R2973 T10362 T10360 pobj cells,in
R2974 T10259 T10258 punct ],29
R2975 T10363 T10354 prep to,leads
R2976 T10364 T10365 det a,disruption
R2977 T10365 T10363 pobj disruption,to
R2978 T10260 T10261 punct (,7C
R2979 T10366 T10365 amod simultaneous,disruption
R2980 T10367 T10365 prep of,disruption
R2981 T10368 T10369 nmod heterochromatin,organization
R2982 T10261 T10232 parataxis 7C,are
R2983 T10369 T10367 pobj organization,of
R2984 T10370 T10371 nummod 3,D
R2985 T10371 T10369 compound D,organization
R2986 T10262 T10261 compound Figures,7C
R2987 T10372 T10371 punct -,D
R2988 T10373 T10365 cc and,disruption
R2989 T10374 T10375 det an,alteration
R2990 T10375 T10365 conj alteration,disruption
R2991 T10263 T10261 cc and,7C
R2992 T10376 T10375 prep in,alteration
R2993 T10377 T10378 amod epigenetic,marking
R2994 T10264 T10261 conj 7D,7C
R2995 T10378 T10376 pobj marking,in
R2996 T10379 T10349 punct .,show
R2997 T10265 T10261 punct ),7C
R2998 T10266 T10232 punct .,are
R2999 T10268 T10269 nsubjpass H3K9me3,perturbed
R3000 T10270 T10269 auxpass was,perturbed
R3001 T10271 T10269 advmod severely,perturbed
R3002 T10272 T10269 prep in,perturbed
R3003 T10273 T10274 npadvmod p150CAF,depleted
R3004 T10274 T10278 amod depleted,cells
R3005 T10275 T10273 punct -,p150CAF
R3006 T10276 T10273 nummod 1,p150CAF
R3007 T10277 T10274 punct -,depleted
R3008 T10278 T10272 pobj cells,in
R3009 T10279 T10269 punct ", ",perturbed
R3010 T10280 T10269 advcl displaying,perturbed
R3011 T10281 T10282 det a,pattern
R3012 T10282 T10280 dobj pattern,displaying
R3013 T10283 T10282 amod diffuse,pattern
R3014 T10284 T10282 amod similar,pattern
R3015 T10285 T10284 prep to,similar
R3016 T10286 T10285 pobj HP1α,to
R3017 T10287 T10288 punct (,7C
R3018 T10288 T10269 parataxis 7C,perturbed
R3019 T10289 T10288 compound Figure,7C
R3020 T10290 T10288 punct ),7C
R3021 T10291 T10269 punct .,perturbed
R3022 T10293 T10294 det The,pattern
R3023 T10294 T10296 nsubjpass pattern,altered
R3024 T10295 T10294 compound H4K20me3,pattern
R3025 T10297 T10296 auxpass was,altered
R3026 T10298 T10299 advmod even,more
R3027 T10299 T10300 advmod more,severely
R3028 T10300 T10296 advmod severely,altered
R3029 T10301 T10296 punct ", ",altered
R3030 T10302 T10296 advcl showing,altered
R3031 T10303 T10304 preconj both,loss
R3032 T10304 T10302 dobj loss,showing
R3033 T10305 T10304 det a,loss
R3034 T10306 T10304 prep of,loss
R3035 T10307 T10308 det the,dots
R3036 T10308 T10306 pobj dots,of
R3037 T10309 T10308 amod typical,dots
R3038 T10310 T10308 acl revealed,dots
R3039 T10311 T10310 prep in,revealed
R3040 T10312 T10313 compound control,cells
R3041 T10313 T10311 pobj cells,in
R3042 T10314 T10304 cc and,loss
R3043 T10315 T10316 det a,reduction
R3044 T10316 T10304 conj reduction,loss
R3045 T10317 T10316 prep in,reduction
R3046 T10318 T10319 compound signal,intensity
R3047 T10319 T10317 pobj intensity,in
R3048 T10320 T10321 punct (,7D
R3049 T10321 T10296 parataxis 7D,altered
R3050 T10322 T10321 compound Figure,7D
R3051 T10323 T10321 punct ),7D
R3052 T10324 T10296 punct .,altered
R3053 T10326 T10327 advcl Consistent,detected
R3054 T10328 T10326 prep with,Consistent
R3055 T10329 T10330 poss our,experiments
R3056 T10330 T10328 pobj experiments,with
R3057 T10331 T10330 compound ChIP,experiments
R3080 T13122 T13123 advmod Here,provide
R3081 T13124 T13123 punct ", ",provide
R3082 T13125 T13123 nsubj we,provide
R3083 T13126 T13123 dobj evidence,provide
R3084 T13127 T13128 mark that,has
R3085 T13128 T13126 acl has,evidence
R3086 T13129 T13128 nsubj p150CAF,has
R3087 T13130 T13129 punct -,p150CAF
R3088 T13131 T13129 nummod 1,p150CAF
R3089 T13132 T13133 det a,function
R3090 T13133 T13128 dobj function,has
R3091 T13134 T13133 amod crucial,function
R3092 T13135 T13128 prep during,has
R3093 T13136 T13137 nmod mouse,embryogenesis
R3094 T13137 T13135 pobj embryogenesis,during
R3095 T13138 T13137 amod early,embryogenesis
R3096 T13139 T13135 cc and,during
R3097 T13140 T13135 conj in,during
R3098 T13141 T13142 compound ES,cells
R3099 T13142 T13140 pobj cells,in
R3100 T13143 T13123 punct .,provide
R3101 T13145 T13146 amod Previous,studies
R3102 T13146 T13147 nsubj studies,showed
R3103 T13148 T13149 mark that,is
R3104 T13149 T13147 ccomp is,showed
R3105 T13150 T13149 nsubj CAF,is
R3106 T13151 T13150 punct -,CAF
R3107 T13152 T13150 nummod 1,CAF
R3108 T13153 T13149 acomp essential,is
R3109 T13154 T13153 prep for,essential
R3110 T13155 T13156 det the,progression
R3111 T13156 T13154 pobj progression,for
R3112 T13157 T13156 prep of,progression
R3113 T13158 T13159 compound DNA,replication
R3114 T13159 T13157 pobj replication,of
R3115 T13160 T13149 prep in,is
R3116 T13161 T13160 pobj vertebrates,in
R3117 T13162 T13147 punct .,showed
R3118 T13164 T13165 prep In,required
R3119 T13166 T13167 compound Xenopus,laevis
R3120 T13167 T13164 pobj laevis,In
R3121 T13168 T13165 punct ", ",required
R3122 T13169 T13170 nmod p150CAF,function
R3123 T13170 T13165 nsubjpass function,required
R3124 T13171 T13169 punct -,p150CAF
R3125 T13172 T13169 nummod 1,p150CAF
R3126 T13173 T13165 auxpass is,required
R3127 T13174 T13165 prep for,required
R3128 T13175 T13176 det the,divisions
R3129 T13176 T13174 pobj divisions,for
R3130 T13177 T13176 amod rapid,divisions
R3131 T13178 T13176 compound cell,divisions
R3132 T13179 T13180 dep that,occur
R3133 T13180 T13176 relcl occur,divisions
R3134 T13181 T13180 prep during,occur
R3135 T13182 T13183 amod early,development
R3136 T13183 T13181 pobj development,during
R3137 T13184 T13185 punct [,33
R3138 T13185 T13165 parataxis 33,required
R3139 T13186 T13185 punct ],33
R3140 T13187 T13165 punct .,required
R3141 T13189 T13190 advmod Similarly,is
R3142 T13191 T13190 punct ", ",is
R3143 T13192 T13190 nsubj CAF,is
R3144 T13193 T13192 punct -,CAF
R3145 T13194 T13192 nummod 1,CAF
R3146 T13195 T13190 acomp essential,is
R3147 T13196 T13190 prep in,is
R3148 T13197 T13198 amod mammalian,lines
R3149 T13198 T13196 pobj lines,in
R3150 T13199 T13198 compound cell,lines
R3151 T13200 T13190 prep for,is
R3152 T13201 T13202 det the,progression
R3153 T13202 T13200 pobj progression,for
R3154 T13203 T13202 prep of,progression
R3155 T13204 T13205 compound DNA,replication
R3156 T13205 T13203 pobj replication,of
R3157 T13206 T13207 punct [,34
R3158 T13207 T13190 parataxis 34,is
R3159 T13208 T13207 nummod 16,34
R3160 T13209 T13207 punct ",",34
R3161 T13210 T13207 nummod 23,34
R3162 T13211 T13207 punct ",",34
R3163 T13212 T13207 nummod 24,34
R3164 T13213 T13207 punct ",",34
R3165 T13214 T13207 punct ],34
R3166 T13215 T13190 punct .,is
R3167 T13217 T13218 poss Our,findings
R3168 T13218 T13219 nsubj findings,reveal
R3169 T13220 T13221 det a,role
R3170 T13221 T13219 dobj role,reveal
R3171 T13222 T13221 prep for,role
R3172 T13223 T13222 pobj CAF,for
R3173 T13224 T13223 punct -,CAF
R3174 T13225 T13223 nummod 1,CAF
R3175 T13226 T13221 prep in,role
R3176 T13227 T13228 det the,organization
R3177 T13228 T13226 pobj organization,in
R3178 T13229 T13228 amod nuclear,organization
R3179 T13230 T13228 prep of,organization
R3180 T13231 T13232 compound heterochromatin,domains
R3181 T13232 T13230 pobj domains,of
R3182 T13233 T13228 prep during,organization
R3183 T13234 T13235 amod early,development
R3184 T13235 T13233 pobj development,during
R3185 T13236 T13233 cc and,during
R3186 T13237 T13233 conj in,during
R3187 T13238 T13239 compound ES,cells
R3188 T13239 T13237 pobj cells,in
R3189 T13240 T13219 punct .,reveal
R3190 T13242 T13243 nsubj We,show
R3191 T13244 T13245 mark that,observed
R3192 T13245 T13243 ccomp observed,show
R3193 T13246 T13245 prep in,observed
R3194 T13247 T13248 npadvmod p150CAF,depleted
R3195 T13248 T13252 amod depleted,cells
R3196 T13249 T13247 punct -,p150CAF
R3197 T13250 T13247 nummod 1,p150CAF
R3198 T13251 T13248 punct -,depleted
R3199 T13252 T13246 pobj cells,in
R3200 T13253 T13252 compound ES,cells
R3201 T13254 T13245 punct ", ",observed
R3202 T13255 T13256 mark while,persists
R3203 T13256 T13245 advcl persists,observed
R3204 T13257 T13258 compound DNA,replication
R3205 T13258 T13256 nsubj replication,persists
R3206 T13259 T13256 advmod initially,persists
R3207 T13260 T13256 prep without,persists
R3208 T13261 T13262 amod significant,perturbation
R3209 T13262 T13260 pobj perturbation,without
R3210 T13263 T13262 prep in,perturbation
R3211 T13264 T13265 amod nucleosomal,organization
R3212 T13265 T13263 pobj organization,in
R3213 T13266 T13245 punct ", ",observed
R3214 T13267 T13268 amod severe,defects
R3215 T13268 T13245 nsubjpass defects,observed
R3216 T13269 T13268 compound heterochromatin,defects
R3217 T13270 T13268 compound organization,defects
R3218 T13271 T13245 aux can,observed
R3219 T13272 T13245 auxpass be,observed
R3220 T13273 T13243 punct .,show
R3221 T13275 T13276 nsubj Loss,affect
R3222 T13277 T13275 prep of,Loss
R3223 T13278 T13277 pobj p150CAF,of
R3224 T13279 T13278 punct -,p150CAF
R3225 T13280 T13278 nummod 1,p150CAF
R3226 T13281 T13276 aux did,affect
R3227 T13282 T13276 neg not,affect
R3228 T13283 T13284 compound PML,bodies
R3229 T13284 T13276 dobj bodies,affect
R3230 T13285 T13276 prep in,affect
R3231 T13286 T13287 compound ES,nuclei
R3232 T13287 T13285 pobj nuclei,in
R3233 T13288 T13287 compound cell,nuclei
R3234 T13289 T13276 punct ", ",affect
R3235 T13290 T13276 advcl showing,affect
R3236 T13291 T13292 mark that,altered
R3237 T13292 T13290 ccomp altered,showing
R3238 T13293 T13294 amod nuclear,architecture
R3239 T13294 T13292 nsubjpass architecture,altered
R3240 T13295 T13292 auxpass is,altered
R3241 T13296 T13292 neg not,altered
R3242 T13297 T13292 advmod generally,altered
R3243 T13298 T13276 punct .,affect
R3244 T13300 T13301 advmod Ultimately,results
R3245 T13302 T13301 punct ", ",results
R3246 T13303 T13304 nmod p150CAF,depletion
R3247 T13304 T13301 nsubj depletion,results
R3248 T13305 T13303 punct -,p150CAF
R3249 T13306 T13303 nummod 1,p150CAF
R3250 T13307 T13301 prep in,results
R3251 T13308 T13309 det the,arrest
R3252 T13309 T13307 pobj arrest,in
R3253 T13310 T13309 prep of,arrest
R3254 T13311 T13312 compound ES,cell
R3255 T13312 T13313 compound cell,division
R3256 T13313 T13310 pobj division,of
R3257 T13314 T13309 cc and,arrest
R3258 T13315 T13316 compound cell,death
R3259 T13316 T13309 conj death,arrest
R3260 T13317 T13301 punct .,results
R3261 T13319 T13320 prep Given,is
R3262 T13321 T13322 det the,defects
R3263 T13322 T13319 pobj defects,Given
R3264 T13323 T13322 amod major,defects
R3265 T13324 T13322 acl observed,defects
R3266 T13325 T13324 prep in,observed
R3267 T13326 T13327 compound heterochromatin,organization
R3268 T13327 T13325 pobj organization,in
R3269 T13328 T13320 punct ", ",is
R3270 T13329 T13320 nsubj it,is
R3271 T13330 T13320 acomp tempting,is
R3272 T13331 T13332 aux to,speculate
R3273 T13332 T13320 xcomp speculate,is
R3274 T13333 T13334 mark that,cause
R3275 T13334 T13332 ccomp cause,speculate
R3276 T13335 T13336 det these,defects
R3277 T13336 T13334 nsubj defects,cause
R3278 T13337 T13338 det the,arrest
R3279 T13338 T13334 dobj arrest,cause
R3280 T13339 T13338 amod developmental,arrest
R3281 T13340 T13338 prep in,arrest
R3282 T13341 T13342 det the,embryos
R3283 T13342 T13340 pobj embryos,in
R3284 T13343 T13338 cc and,arrest
R3285 T13344 T13338 conj death,arrest
R3286 T13345 T13344 prep in,death
R3287 T13346 T13347 compound ES,cells
R3288 T13347 T13345 pobj cells,in
R3289 T13348 T13320 punct .,is
R3290 T13350 T13351 det The,role
R3291 T13351 T13352 nsubj role,includes
R3292 T13353 T13351 prep of,role
R3293 T13354 T13353 pobj CAF,of
R3294 T13355 T13354 punct -,CAF
R3295 T13356 T13354 nummod 1,CAF
R3296 T13357 T13351 prep in,role
R3297 T13358 T13359 det the,organization
R3298 T13359 T13357 pobj organization,in
R3299 T13360 T13359 amod nuclear,organization
R3300 T13361 T13359 prep of,organization
R3301 T13362 T13361 pobj heterochromatin,of
R3302 T13363 T13364 amod spatial,localization
R3303 T13364 T13352 dobj localization,includes
R3304 T13365 T13364 punct ", ",localization
R3305 T13366 T13364 conj condensation,localization
R3306 T13367 T13366 punct ", ",condensation
R3307 T13368 T13366 cc and,condensation
R3308 T13369 T13366 conj clustering,condensation
R3309 T13370 T13369 prep of,clustering
R3310 T13371 T13372 amod pericentric,domains
R3311 T13372 T13370 pobj domains,of
R3312 T13373 T13352 punct .,includes
R3313 T13375 T13376 det This,function
R3314 T13376 T13378 nsubjpass function,revealed
R3315 T13377 T13376 amod important,function
R3316 T13379 T13376 prep of,function
R3317 T13380 T13379 pobj CAF,of
R3318 T13381 T13380 punct -,CAF
R3319 T13382 T13380 nummod 1,CAF
R3320 T13383 T13378 auxpass was,revealed
R3321 T13384 T13378 neg not,revealed
R3322 T13385 T13378 prep in,revealed
R3323 T13386 T13387 amod primary,MEFs
R3324 T13387 T13385 pobj MEFs,in
R3325 T13388 T13387 punct ", ",MEFs
R3326 T13389 T13390 compound 3T3,cells
R3327 T13390 T13387 conj cells,MEFs
R3328 T13391 T13390 punct ", ",cells
R3329 T13392 T13390 cc or,cells
R3330 T13393 T13394 amod human,lines
R3331 T13394 T13390 conj lines,cells
R3332 T13395 T13394 compound cell,lines
R3333 T13396 T13378 punct ", ",revealed
R3334 T13397 T13378 advcl suggesting,revealed
R3335 T13398 T13399 mark that,is
R3336 T13399 T13397 ccomp is,suggesting
R3337 T13400 T13399 nsubj it,is
R3338 T13401 T13399 acomp specific,is
R3339 T13402 T13401 prep of,specific
R3340 T13403 T13404 amod pluripotent,cells
R3341 T13404 T13402 pobj cells,of
R3342 T13405 T13404 amod embryonic,cells
R3343 T13406 T13378 punct .,revealed
R3344 T13408 T13409 advmod Alternatively,represent
R3345 T13410 T13409 punct ", ",represent
R3346 T13411 T13412 amod early,embryos
R3347 T13412 T13409 nsubj embryos,represent
R3348 T13413 T13412 cc and,embryos
R3349 T13414 T13415 compound ES,cells
R3350 T13415 T13412 conj cells,embryos
R3351 T13416 T13412 punct ", ",embryos
R3352 T13417 T13418 poss whose,genome
R3353 T13418 T13419 dep genome,is
R3354 T13419 T13412 relcl is,embryos
R3355 T13420 T13421 advmod more,plastic
R3356 T13421 T13419 acomp plastic,is
R3357 T13422 T13421 prep than,plastic
R3358 T13423 T13424 amod somatic,cells
R3359 T13424 T13422 pobj cells,than
R3360 T13425 T13409 punct ", ",represent
R3361 T13426 T13409 aux might,represent
R3362 T13427 T13428 det a,context
R3363 T13428 T13409 dobj context,represent
R3364 T13429 T13430 advmod particularly,sensitive
R3365 T13430 T13428 amod sensitive,context
R3366 T13431 T13432 prep in,exacerbated
R3367 T13432 T13428 relcl exacerbated,context
R3368 T13433 T13431 pobj which,in
R3369 T13434 T13435 det the,importance
R3370 T13435 T13432 nsubjpass importance,exacerbated
R3371 T13436 T13435 prep of,importance
R3372 T13437 T13436 pobj CAF,of
R3373 T13438 T13437 punct -,CAF
R3374 T13439 T13437 nummod 1,CAF
R3375 T13440 T13435 prep in,importance
R3376 T13441 T13442 compound heterochromatin,organization
R3377 T13442 T13440 pobj organization,in
R3378 T13443 T13432 auxpass is,exacerbated
R3379 T13444 T13409 punct .,represent
R3380 T13446 T13447 prep In,are
R3381 T13448 T13449 compound ES,cells
R3382 T13449 T13446 pobj cells,In
R3383 T13450 T13447 punct ", ",are
R3384 T13451 T13452 amod major,proteins
R3385 T13452 T13447 nsubj proteins,are
R3386 T13453 T13452 amod architectural,proteins
R3387 T13454 T13452 compound chromatin,proteins
R3388 T13455 T13447 acomp hyperdynamic,are
R3389 T13456 T13447 cc and,are
R3390 T13457 T13447 conj bind,are
R3391 T13458 T13459 advmod relatively,loosely
R3392 T13459 T13457 advmod loosely,bind
R3393 T13460 T13457 prep to,bind
R3394 T13461 T13460 pobj chromatin,to
R3395 T13462 T13463 punct [,35
R3396 T13463 T13457 parataxis 35,bind
R3397 T13464 T13463 punct ],35
R3398 T13465 T13447 punct .,are
R3399 T13467 T13468 prep In,show
R3400 T13469 T13470 det this,context
R3401 T13470 T13467 pobj context,In
R3402 T13471 T13470 amod cellular,context
R3403 T13472 T13468 punct ", ",show
R3404 T13473 T13474 poss our,findings
R3405 T13474 T13468 nsubj findings,show
R3406 T13475 T13476 mark that,relies
R3407 T13476 T13468 ccomp relies,show
R3408 T13477 T13478 amod proper,architecture
R3409 T13478 T13476 nsubj architecture,relies
R3410 T13479 T13478 nmod heterochromatin,architecture
R3411 T13480 T13478 amod nuclear,architecture
R3412 T13481 T13476 prep on,relies
R3413 T13482 T13483 nmod CAF,function
R3414 T13483 T13481 pobj function,on
R3415 T13484 T13482 punct -,CAF
R3416 T13485 T13482 nummod 1,CAF
R3417 T13486 T13468 punct .,show
R3418 T13488 T13489 prep In,be
R3419 T13490 T13488 pobj contrast,In
R3420 T13491 T13489 punct ", ",be
R3421 T13492 T13489 prep in,be
R3422 T13493 T13494 amod undifferentiated,cells
R3423 T13494 T13492 pobj cells,in
R3424 T13495 T13496 dep that,committed
R3425 T13496 T13494 relcl committed,cells
R3426 T13497 T13496 auxpass are,committed
R3427 T13498 T13496 advmod already,committed
R3428 T13499 T13496 dep lineage,committed
R3429 T13500 T13494 punct (,cells
R3430 T13501 T13502 amod such,as
R3431 T13502 T13494 prep as,cells
R3432 T13503 T13502 pobj MEFs,as
R3433 T13504 T13489 punct ),be
R3434 T13505 T13506 compound genome,architecture
R3435 T13506 T13489 nsubj architecture,be
R3436 T13507 T13489 aux might,be
R3437 T13508 T13509 advmod more,stable
R3438 T13509 T13489 acomp stable,be
R3439 T13510 T13509 prep than,stable
R3440 T13511 T13510 prep in,than
R3441 T13512 T13513 compound ES,cells
R3442 T13513 T13511 pobj cells,in
R3443 T13514 T13489 cc and,be
R3444 T13515 T13516 advmod thus,disrupted
R3445 T13516 T13489 conj disrupted,be
R3446 T13517 T13516 aux can,disrupted
R3447 T13518 T13516 neg not,disrupted
R3448 T13519 T13516 auxpass be,disrupted
R3449 T13520 T13516 agent by,disrupted
R3450 T13521 T13522 nmod CAF,depletion
R3451 T13522 T13520 pobj depletion,by
R3452 T13523 T13521 punct -,CAF
R3453 T13524 T13521 nummod 1,CAF
R3454 T13525 T13489 punct .,be
R3455 T13527 T13528 det This,function
R3456 T13528 T13530 nsubjpass function,conserved
R3457 T13529 T13528 amod important,function
R3458 T13531 T13528 prep of,function
R3459 T13532 T13531 pobj CAF,of
R3460 T13533 T13532 punct -,CAF
R3461 T13534 T13532 nummod 1,CAF
R3462 T13535 T13528 prep in,function
R3463 T13536 T13537 amod pluripotent,cells
R3464 T13537 T13535 pobj cells,in
R3465 T13538 T13537 amod embryonic,cells
R3466 T13539 T13530 aux could,conserved
R3467 T13540 T13530 auxpass be,conserved
R3468 T13541 T13530 advmod partially,conserved
R3469 T13542 T13530 prep during,conserved
R3470 T13543 T13542 pobj evolution,during
R3471 T13544 T13530 punct .,conserved
R3472 T13546 T13547 advmod Indeed,associated
R3473 T13548 T13547 punct ", ",associated
R3474 T13549 T13547 prep in,associated
R3475 T13550 T13551 compound Arabidopsis,thaliana
R3476 T13551 T13549 pobj thaliana,in
R3477 T13552 T13551 punct ", ",thaliana
R3478 T13553 T13554 prep in,is
R3479 T13554 T13551 relcl is,thaliana
R3480 T13555 T13553 pobj which,in
R3481 T13556 T13554 nsubj CAF,is
R3482 T13557 T13556 punct -,CAF
R3483 T13558 T13556 nummod 1,CAF
R3484 T13559 T13554 neg not,is
R3485 T13560 T13554 acomp essential,is
R3486 T13561 T13560 prep for,essential
R3487 T13562 T13561 pobj viability,for
R3488 T13563 T13564 punct [,36
R3489 T13564 T13554 parataxis 36,is
R3490 T13565 T13564 punct ],36
R3491 T13566 T13547 punct ", ",associated
R3492 T13567 T13547 nsubjpass loss,associated
R3493 T13568 T13567 prep of,loss
R3494 T13569 T13568 pobj CAF,of
R3495 T13570 T13569 punct -,CAF
R3496 T13571 T13569 nummod 1,CAF
R3497 T13572 T13547 auxpass is,associated
R3498 T13573 T13547 prep with,associated
R3499 T13574 T13575 det a,alteration
R3500 T13575 T13573 pobj alteration,with
R3501 T13576 T13575 amod mild,alteration
R3502 T13577 T13575 prep in,alteration
R3503 T13578 T13579 compound chromocenter,size
R3504 T13579 T13577 pobj size,in
R3505 T13580 T13581 punct [,37
R3506 T13581 T13547 parataxis 37,associated
R3507 T13582 T13581 punct ],37
R3508 T13583 T13547 punct .,associated
R3509 T13585 T13586 det This,phenotype
R3510 T13586 T13587 nsubj phenotype,is
R3511 T13588 T13587 advmod somehow,is
R3512 T13589 T13587 acomp reminiscent,is
R3513 T13590 T13589 prep of,reminiscent
R3514 T13591 T13590 pobj loss,of
R3515 T13592 T13591 prep of,loss
R3516 T13593 T13594 npadvmod CAF,mediated
R3517 T13594 T13598 amod mediated,defects
R3518 T13595 T13593 punct -,CAF
R3519 T13596 T13593 nummod 1,CAF
R3520 T13597 T13594 punct -,mediated
R3521 T13598 T13592 pobj defects,of
R3522 T13599 T13598 prep in,defects
R3523 T13600 T13601 compound heterochromatin,organization
R3524 T13601 T13599 pobj organization,in
R3525 T13602 T13591 prep in,loss
R3526 T13603 T13604 amod early,embryos
R3527 T13604 T13602 pobj embryos,in
R3528 T13605 T13604 compound mouse,embryos
R3529 T13606 T13587 punct .,is
R3530 T13608 T13609 prep In,show
R3531 T13610 T13611 compound mouse,cells
R3532 T13611 T13608 pobj cells,In
R3533 T13612 T13611 compound ES,cells
R3534 T13613 T13609 punct ", ",show
R3535 T13614 T13609 nsubj we,show
R3536 T13615 T13616 mark that,required
R3537 T13616 T13609 ccomp required,show
R3538 T13617 T13616 nsubjpass CAF,required
R3539 T13618 T13617 punct -,CAF
R3540 T13619 T13617 nummod 1,CAF
R3541 T13620 T13616 auxpass is,required
R3542 T13621 T13616 advmod also,required
R3543 T13622 T13616 prep for,required
R3544 T13623 T13624 amod regular,levels
R3545 T13624 T13622 pobj levels,for
R3546 T13625 T13624 prep of,levels
R3547 T13626 T13625 pobj H4K20me3,of
R3548 T13627 T13624 prep at,levels
R3549 T13628 T13629 amod pericentric,repeats
R3550 T13629 T13627 pobj repeats,at
R3551 T13630 T13627 punct ", ",at
R3552 T13631 T13627 cc but,at
R3553 T13632 T13631 neg not,but
R3554 T13633 T13627 conj at,at
R3555 T13634 T13635 compound IAP,elements
R3556 T13635 T13633 pobj elements,at
R3557 T13636 T13635 punct ", ",elements
R3558 T13637 T13638 dep which,are
R3559 T13638 T13635 relcl are,elements
R3560 T13639 T13640 amod repeated,sequences
R3561 T13640 T13638 attr sequences,are
R3562 T13641 T13640 acl spread,sequences
R3563 T13642 T13643 advmod all,over
R3564 T13643 T13641 prep over,spread
R3565 T13644 T13645 det the,genome
R3566 T13645 T13643 pobj genome,over
R3567 T13646 T13645 compound mouse,genome
R3568 T13647 T13609 punct .,show
R3569 T13649 T13650 det These,data
R3570 T13650 T13651 nsubj data,suggest
R3571 T13652 T13653 mark that,coupled
R3572 T13653 T13651 ccomp coupled,suggest
R3573 T13654 T13655 amod proper,organization
R3574 T13655 T13653 nsubjpass organization,coupled
R3575 T13656 T13655 amod nuclear,organization
R3576 T13657 T13655 cc and,organization
R3577 T13658 T13659 amod epigenetic,marking
R3578 T13659 T13655 conj marking,organization
R3579 T13660 T13659 prep of,marking
R3580 T13661 T13662 amod pericentric,heterochromatin
R3581 T13662 T13660 pobj heterochromatin,of
R3582 T13663 T13653 auxpass are,coupled
R3583 T13664 T13653 prep in,coupled
R3584 T13665 T13666 compound ES,cells
R3585 T13666 T13664 pobj cells,in
R3586 T13667 T13651 punct .,suggest
R3587 T13669 T13670 advmod Alternatively,represent
R3588 T13671 T13670 punct ", ",represent
R3589 T13672 T13673 nummod 3,D
R3590 T13673 T13675 compound D,organization
R3591 T13674 T13673 punct -,D
R3592 T13675 T13670 nsubj organization,represent
R3593 T13676 T13675 prep of,organization
R3594 T13677 T13676 pobj heterochromatin,of
R3595 T13678 T13677 cc and,heterochromatin
R3596 T13679 T13680 amod epigenetic,marking
R3597 T13680 T13677 conj marking,heterochromatin
R3598 T13681 T13670 aux might,represent
R3599 T13682 T13683 nummod two,functions
R3600 T13683 T13670 dobj functions,represent
R3601 T13684 T13683 amod independent,functions
R3602 T13685 T13683 prep of,functions
R3603 T13686 T13685 pobj CAF,of
R3604 T13687 T13686 punct -,CAF
R3605 T13688 T13686 nummod 1,CAF
R3606 T13689 T13670 punct .,represent
R3607 T13691 T13692 det The,requirement
R3608 T13692 T13694 nsubj requirement,reflect
R3609 T13693 T13692 amod variable,requirement
R3610 T13695 T13692 prep for,requirement
R3611 T13696 T13695 pobj CAF,for
R3612 T13697 T13696 punct -,CAF
R3613 T13698 T13696 nummod 1,CAF
R3614 T13699 T13692 prep across,requirement
R3615 T13700 T13699 pobj species,across
R3616 T13701 T13694 aux might,reflect
R3617 T13702 T13703 det the,acquisition
R3618 T13703 T13694 dobj acquisition,reflect
R3619 T13704 T13703 prep of,acquisition
R3620 T13705 T13706 amod new,properties
R3621 T13706 T13704 pobj properties,of
R3622 T13707 T13706 acl affecting,properties
R3623 T13708 T13709 det the,function
R3624 T13709 T13707 dobj function,affecting
R3625 T13710 T13709 prep of,function
R3626 T13711 T13712 compound histone,H3
R3627 T13712 T13713 compound H3,variants
R3628 T13713 T13710 pobj variants,of
R3629 T13714 T13703 prep during,acquisition
R3630 T13715 T13714 pobj evolution,during
R3631 T13716 T13715 prep of,evolution
R3632 T13717 T13716 pobj eukaryotes,of
R3633 T13718 T13694 punct .,reflect
R3634 T13720 T13721 nsubj CAF,is
R3635 T13722 T13720 punct -,CAF
R3636 T13723 T13720 nummod 1,CAF
R3637 T13724 T13721 acomp essential,is
R3638 T13725 T13721 prep in,is
R3639 T13726 T13725 pobj mammals,in
R3640 T13727 T13721 cc but,is
R3641 T13728 T13721 conj dispensable,is
R3642 T13729 T13728 prep in,dispensable
R3643 T13730 T13731 compound Saccharomyces,cerevisiae
R3644 T13731 T13729 pobj cerevisiae,in
R3645 T13732 T13733 punct [,38
R3646 T13733 T13728 parataxis 38,dispensable
R3647 T13734 T13733 punct ],38
R3648 T13735 T13721 punct .,is
R3649 T13737 T13738 advmod Interestingly,contain
R3650 T13739 T13738 punct ", ",contain
R3651 T13740 T13741 det the,genome
R3652 T13741 T13738 nsubj genome,contain
R3653 T13742 T13741 amod budding,genome
R3654 T13743 T13741 compound yeast,genome
R3655 T13744 T13738 aux does,contain
R3656 T13745 T13738 neg not,contain
R3657 T13746 T13747 compound heterochromatin,regions
R3658 T13747 T13738 dobj regions,contain
R3659 T13748 T13747 amod equivalent,regions
R3660 T13749 T13748 prep to,equivalent
R3661 T13750 T13749 pobj those,to
R3662 T13751 T13750 prep of,those
R3663 T13752 T13753 amod higher,eukaryotes
R3664 T13753 T13751 pobj eukaryotes,of
R3665 T13754 T13738 punct ", ",contain
R3666 T13755 T13738 cc and,contain
R3667 T13756 T13757 amod several,features
R3668 T13757 T13759 nsubjpass features,observed
R3669 T13758 T13757 compound hallmark,features
R3670 T13759 T13738 conj observed,contain
R3671 T13760 T13757 prep of,features
R3672 T13761 T13760 pobj heterochromatin,of
R3673 T13762 T13763 amod such,as
R3674 T13763 T13757 prep as,features
R3675 T13764 T13765 nmod di,trimethylation
R3676 T13765 T13763 pobj trimethylation,as
R3677 T13766 T13765 punct -,trimethylation
R3678 T13767 T13765 cc and,trimethylation
R3679 T13768 T13765 prep at,trimethylation
R3680 T13769 T13768 pobj H3K9,at
R3681 T13770 T13769 punct ", ",H3K9
R3682 T13771 T13769 conj H3K27,H3K9
R3683 T13772 T13771 punct ", ",H3K27
R3684 T13773 T13771 cc and,H3K27
R3685 T13774 T13771 conj H4K20,H3K27
R3686 T13775 T13759 auxpass are,observed
R3687 T13776 T13759 neg not,observed
R3688 T13777 T13759 prep in,observed
R3689 T13778 T13779 det the,chromatin
R3690 T13779 T13777 pobj chromatin,in
R3691 T13780 T13779 amod silent,chromatin
R3692 T13781 T13779 prep of,chromatin
R3693 T13782 T13783 compound S.,cerevisiae
R3694 T13783 T13781 pobj cerevisiae,of
R3695 T13784 T13738 punct .,contain
R3696 T13786 T13787 prep In,associated
R3697 T13788 T13786 pobj mammals,In
R3698 T13789 T13787 punct ", ",associated
R3699 T13790 T13791 compound H3K9,dimethylation
R3700 T13791 T13787 nsubjpass dimethylation,associated
R3701 T13792 T13787 auxpass is,associated
R3702 T13793 T13787 advmod predominantly,associated
R3703 T13794 T13787 prep with,associated
R3704 T13795 T13794 pobj H3.1,with
R3705 T13796 T13794 punct ", ",with
R3706 T13797 T13794 cc but,with
R3707 T13798 T13797 neg not,but
R3708 T13799 T13794 conj with,with
R3709 T13800 T13799 pobj H3.3,with
R3710 T13801 T13800 punct ", ",H3.3
R3711 T13802 T13803 dep which,carries
R3712 T13803 T13800 relcl carries,H3.3
R3713 T13804 T13803 dobj modifications,carries
R3714 T13805 T13806 advmod typically,found
R3715 T13806 T13804 acl found,modifications
R3716 T13807 T13806 prep in,found
R3717 T13808 T13809 amod transcribed,regions
R3718 T13809 T13807 pobj regions,in
R3719 T13810 T13809 compound chromatin,regions
R3720 T13811 T13812 punct [,39
R3721 T13812 T13787 parataxis 39,associated
R3722 T13813 T13812 punct ],39
R3723 T13814 T13787 punct .,associated
R3724 T13816 T13817 prep Outside,possesses
R3725 T13818 T13816 prep of,Outside
R3726 T13819 T13820 det the,variant
R3727 T13820 T13818 pobj variant,of
R3728 T13821 T13820 amod centromeric,variant
R3729 T13822 T13820 compound H3,variant
R3730 T13823 T13817 punct ", ",possesses
R3731 T13824 T13825 compound S.,cerevisiae
R3732 T13825 T13817 nsubj cerevisiae,possesses
R3733 T13826 T13827 advmod only,H3.3
R3734 T13827 T13817 dobj H3.3,possesses
R3735 T13828 T13827 punct ", ",H3.3
R3736 T13829 T13830 dep which,expressed
R3737 T13830 T13827 relcl expressed,H3.3
R3738 T13831 T13830 aux is,expressed
R3739 T13832 T13830 cc and,expressed
R3740 T13833 T13830 conj incorporated,expressed
R3741 T13834 T13833 prep into,incorporated
R3742 T13835 T13834 pobj chromatin,into
R3743 T13836 T13830 prep in,expressed
R3744 T13837 T13838 det a,fashion
R3745 T13838 T13836 pobj fashion,in
R3746 T13839 T13840 npadvmod replication,independent
R3747 T13840 T13838 amod independent,fashion
R3748 T13841 T13840 punct -,independent
R3749 T13842 T13830 prep in,expressed
R3750 T13843 T13844 amod higher,eukaryotes
R3751 T13844 T13842 pobj eukaryotes,in
R3752 T13845 T13846 punct [,12
R3753 T13846 T13817 parataxis 12,possesses
R3754 T13847 T13846 punct ],12
R3755 T13848 T13817 punct .,possesses
R3756 T13850 T13851 det These,data
R3757 T13851 T13852 nsubj data,suggest
R3758 T13853 T13854 det a,role
R3759 T13854 T13852 dobj role,suggest
R3760 T13855 T13854 amod specific,role
R3761 T13856 T13854 prep for,role
R3762 T13857 T13856 pobj H3.1,for
R3763 T13858 T13854 prep in,role
R3764 T13859 T13860 compound heterochromatin,regions
R3765 T13860 T13858 pobj regions,in
R3766 T13861 T13852 punct .,suggest
R3767 T13863 T13864 nsubj We,show
R3768 T13865 T13864 advmod here,show
R3769 T13866 T13867 mark that,required
R3770 T13867 T13864 ccomp required,show
R3771 T13868 T13867 nsubjpass CAF,required
R3772 T13869 T13868 punct -,CAF
R3773 T13870 T13868 nummod 1,CAF
R3774 T13871 T13868 punct ", ",CAF
R3775 T13872 T13873 dep which,is
R3776 T13873 T13868 relcl is,CAF
R3777 T13874 T13875 det a,complex
R3778 T13875 T13873 attr complex,is
R3779 T13876 T13875 nmod H3.1,complex
R3780 T13877 T13878 npadvmod replication,dependent
R3781 T13878 T13875 amod dependent,complex
R3782 T13879 T13878 punct -,dependent
R3783 T13880 T13875 compound loading,complex
R3784 T13881 T13882 punct [,11
R3785 T13882 T13868 parataxis 11,CAF
R3786 T13883 T13882 punct ],11
R3787 T13884 T13867 punct ", ",required
R3788 T13885 T13867 auxpass is,required
R3789 T13886 T13867 advmod specifically,required
R3790 T13887 T13867 prep for,required
R3791 T13888 T13889 det the,organization
R3792 T13889 T13887 pobj organization,for
R3793 T13890 T13889 amod nuclear,organization
R3794 T13891 T13889 prep of,organization
R3795 T13892 T13893 amod pericentric,heterochromatin
R3796 T13893 T13891 pobj heterochromatin,of
R3797 T13894 T13867 prep in,required
R3798 T13895 T13894 pobj embryos,in
R3799 T13896 T13895 cc and,embryos
R3800 T13897 T13898 compound ES,cells
R3801 T13898 T13895 conj cells,embryos
R3802 T13899 T13864 punct .,show
R3803 T13901 T13902 nummod One,possibility
R3804 T13902 T13903 nsubj possibility,be
R3805 T13904 T13903 aux would,be
R3806 T13905 T13906 det a,scenario
R3807 T13906 T13903 attr scenario,be
R3808 T13907 T13908 prep in,required
R3809 T13908 T13906 relcl required,scenario
R3810 T13909 T13907 pobj which,in
R3811 T13910 T13908 nsubjpass incorporation,required
R3812 T13911 T13910 prep of,incorporation
R3813 T13912 T13911 pobj H3.1,of
R3814 T13913 T13910 prep into,incorporation
R3815 T13914 T13913 pobj chromatin,into
R3816 T13915 T13908 auxpass is,required
R3817 T13916 T13908 prep for,required
R3818 T13917 T13918 det the,organization
R3819 T13918 T13916 pobj organization,for
R3820 T13919 T13918 amod proper,organization
R3821 T13920 T13918 amod nuclear,organization
R3822 T13921 T13918 prep of,organization
R3823 T13922 T13923 amod constitutive,heterochromatin
R3824 T13923 T13921 pobj heterochromatin,of
R3825 T13924 T13908 prep in,required
R3826 T13925 T13926 det an,context
R3827 T13926 T13924 pobj context,in
R3828 T13927 T13926 amod embryonic,context
R3829 T13928 T13903 punct .,be
R3830 T13930 T13931 mark While,has
R3831 T13931 T13933 advcl has,is
R3832 T13932 T13931 nsubj this,has
R3833 T13934 T13935 aux to,addressed
R3834 T13935 T13931 xcomp addressed,has
R3835 T13936 T13935 auxpass be,addressed
R3836 T13937 T13935 advmod experimentally,addressed
R3837 T13938 T13933 punct ", ",is
R3838 T13939 T13933 nsubj it,is
R3839 T13940 T13933 acomp worthwhile,is
R3840 T13941 T13942 aux to,mention
R3841 T13942 T13933 xcomp mention,is
R3842 T13943 T13944 det an,mechanism
R3843 T13944 T13942 dobj mechanism,mention
R3844 T13945 T13944 amod alternate,mechanism
R3845 T13946 T13944 amod possible,mechanism
R3846 T13947 T13948 dep that,explain
R3847 T13948 T13944 relcl explain,mechanism
R3848 T13949 T13948 aux might,explain
R3849 T13950 T13951 det the,disruption
R3850 T13951 T13948 dobj disruption,explain
R3851 T13952 T13951 prep of,disruption
R3852 T13953 T13954 compound heterochromatin,domains
R3853 T13954 T13952 pobj domains,of
R3854 T13955 T13951 prep in,disruption
R3855 T13956 T13957 npadvmod p150CAF,null
R3856 T13957 T13960 amod null,embryos
R3857 T13958 T13956 punct -,p150CAF
R3858 T13959 T13956 nummod 1,p150CAF
R3859 T13960 T13955 pobj embryos,in
R3860 T13961 T13960 cc and,embryos
R3861 T13962 T13963 compound ES,cells
R3862 T13963 T13960 conj cells,embryos
R3863 T13964 T13933 punct .,is
R3864 T13966 T13967 nsubjpass CAF,required
R3865 T13968 T13966 punct -,CAF
R3866 T13969 T13966 nummod 1,CAF
R3867 T13970 T13967 aux could,required
R3868 T13971 T13967 auxpass be,required
R3869 T13972 T13967 prep for,required
R3870 T13973 T13974 det the,loading
R3871 T13974 T13972 pobj loading,for
R3872 T13975 T13974 punct ", ",loading
R3873 T13976 T13974 prep into,loading
R3874 T13977 T13976 pobj heterochromatin,into
R3875 T13978 T13974 punct ", ",loading
R3876 T13979 T13974 prep of,loading
R3877 T13980 T13981 det an,partner
R3878 T13981 T13979 pobj partner,of
R3879 T13982 T13981 amod interacting,partner
R3880 T13983 T13981 acl required,partner
R3881 T13984 T13983 prep for,required
R3882 T13985 T13986 det the,clustering
R3883 T13986 T13984 pobj clustering,for
R3884 T13987 T13986 prep of,clustering
R3885 T13988 T13989 amod pericentric,domains
R3886 T13989 T13987 pobj domains,of
R3887 T13990 T13967 punct .,required
R3888 T13992 T13993 prep Following,become
R3889 T13994 T13995 nummod one,rounds
R3890 T13995 T13992 pobj rounds,Following
R3891 T13996 T13994 cc or,one
R3892 T13997 T13994 conj two,one
R3893 T13998 T13995 prep of,rounds
R3894 T13999 T14000 compound DNA,replication
R3895 T14000 T13998 pobj replication,of
R3896 T14001 T14000 prep in,replication
R3897 T14002 T14003 det the,absence
R3898 T14003 T14001 pobj absence,in
R3899 T14004 T14003 prep of,absence
R3900 T14005 T14004 pobj p150CAF,of
R3901 T14006 T14005 punct -,p150CAF
R3902 T14007 T14005 nummod 1,p150CAF
R3903 T14008 T13993 punct ", ",become
R3904 T14009 T13993 nsubj heterochromatin,become
R3905 T14010 T13993 aux would,become
R3906 T14011 T13993 acomp deprived,become
R3907 T14012 T14011 prep of,deprived
R3908 T14013 T14014 det this,molecule
R3909 T14014 T14012 pobj molecule,of
R3910 T14015 T13993 punct ", ",become
R3911 T14016 T14017 dep which,cause
R3912 T14017 T13993 advcl cause,become
R3913 T14018 T14017 aux would,cause
R3914 T14019 T14020 det the,disruption
R3915 T14020 T14017 dobj disruption,cause
R3916 T14021 T14020 prep of,disruption
R3917 T14022 T14023 poss its,organization
R3918 T14023 T14021 pobj organization,of
R3919 T14024 T14025 nummod 3,D
R3920 T14025 T14023 compound D,organization
R3921 T14026 T14025 punct -,D
R3922 T14027 T13993 punct .,become
R3923 T14029 T14030 det A,candidate
R3924 T14030 T14032 nsubj candidate,is
R3925 T14031 T14030 amod potential,candidate
R3926 T14033 T14034 det the,protein
R3927 T14034 T14032 attr protein,is
R3928 T14035 T14034 compound HP1,protein
R3929 T14036 T14034 punct ", ",protein
R3930 T14037 T14038 dep which,interacts
R3931 T14038 T14034 relcl interacts,protein
R3932 T14039 T14038 prep with,interacts
R3933 T14040 T14039 pobj CAF,with
R3934 T14041 T14040 punct -,CAF
R3935 T14042 T14040 nummod 1,CAF
R3936 T14043 T14044 punct [,16
R3937 T14044 T14032 parataxis 16,is
R3938 T14045 T14044 nummod 13,16
R3939 T14046 T14044 punct ",",16
R3940 T14047 T14044 punct ],16
R3941 T14048 T14032 punct .,is
R3942 T14050 T14051 prep In,revealed
R3943 T14052 T14050 pobj agreement,In
R3944 T14053 T14052 prep with,agreement
R3945 T14054 T14055 det a,report
R3946 T14055 T14053 pobj report,with
R3947 T14056 T14055 amod recent,report
R3948 T14057 T14058 punct [,40
R3949 T14058 T14052 parataxis 40,agreement
R3950 T14059 T14058 punct ],40
R3951 T14060 T14051 punct ", ",revealed
R3952 T14061 T14062 poss our,analysis
R3953 T14062 T14051 nsubj analysis,revealed
R3954 T14063 T14062 prep of,analysis
R3955 T14064 T14063 pobj heterochromatin,of
R3956 T14065 T14064 prep in,heterochromatin
R3957 T14066 T14067 amod pre-implantation,embryos
R3958 T14067 T14065 pobj embryos,in
R3959 T14068 T14051 aux has,revealed
R3960 T14069 T14070 amod drastic,changes
R3961 T14070 T14051 dobj changes,revealed
R3962 T14071 T14070 prep in,changes
R3963 T14072 T14073 amod nuclear,organization
R3964 T14073 T14071 pobj organization,in
R3965 T14074 T14070 prep between,changes
R3966 T14075 T14076 det the,stages
R3967 T14076 T14074 pobj stages,between
R3968 T14077 T14078 nummod two,cell
R3969 T14078 T14076 nmod cell,stages
R3970 T14079 T14078 punct -,cell
R3971 T14080 T14078 cc and,cell
R3972 T14081 T14078 conj blastocyst,cell
R3973 T14082 T14051 punct .,revealed
R3974 T14084 T14085 compound Cloning,experiments
R3975 T14085 T14086 nsubj experiments,revealed
R3976 T14087 T14085 prep in,experiments
R3977 T14088 T14087 pobj mouse,in
R3978 T14089 T14090 mark that,reverted
R3979 T14090 T14086 ccomp reverted,revealed
R3980 T14091 T14092 det the,organization
R3981 T14092 T14090 nsubjpass organization,reverted
R3982 T14093 T14092 amod nuclear,organization
R3983 T14094 T14092 prep of,organization
R3984 T14095 T14094 pobj heterochromatin,of
R3985 T14096 T14092 prep in,organization
R3986 T14097 T14098 compound ES,nuclei
R3987 T14098 T14096 pobj nuclei,in
R3988 T14099 T14098 compound cell,nuclei
R3989 T14100 T14090 auxpass was,reverted
R3990 T14101 T14090 advmod quickly,reverted
R3991 T14102 T14090 prep into,reverted
R3992 T14103 T14104 det the,form
R3993 T14104 T14102 pobj form,into
R3994 T14105 T14106 nummod one,cell
R3995 T14106 T14104 nmod cell,form
R3996 T14107 T14106 punct -,cell
R3997 T14108 T14109 npadvmod stage,specific
R3998 T14109 T14104 amod specific,form
R3999 T14110 T14109 punct -,specific
R4000 T14111 T14090 prep after,reverted
R4001 T14112 T14113 amod nuclear,transfer
R4002 T14113 T14111 pobj transfer,after
R4003 T14114 T14115 punct [,40
R4004 T14115 T14086 parataxis 40,revealed
R4005 T14116 T14115 punct ],40
R4006 T14117 T14086 punct .,revealed
R4007 T14119 T14120 advmod Hence,parallels
R4008 T14121 T14120 punct ", ",parallels
R4009 T14122 T14120 nsubj remodeling,parallels
R4010 T14123 T14122 prep of,remodeling
R4011 T14124 T14125 nmod heterochromatin,organization
R4012 T14125 T14123 pobj organization,of
R4013 T14126 T14127 nummod 3,D
R4014 T14127 T14125 compound D,organization
R4015 T14128 T14127 punct -,D
R4016 T14129 T14130 amod nuclear,reprogramming
R4017 T14130 T14120 dobj reprogramming,parallels
R4018 T14131 T14130 prep toward,reprogramming
R4019 T14132 T14133 det an,status
R4020 T14133 T14131 pobj status,toward
R4021 T14134 T14135 amod early,embryonic
R4022 T14135 T14133 amod embryonic,status
R4023 T14136 T14133 prep in,status
R4024 T14137 T14138 amod cloned,embryos
R4025 T14138 T14136 pobj embryos,in
R4026 T14139 T14120 punct .,parallels
R4027 T14141 T14142 det This,reorganization
R4028 T14142 T14144 nsubj reorganization,is
R4029 T14143 T14142 amod drastic,reorganization
R4030 T14145 T14142 prep of,reorganization
R4031 T14146 T14147 compound heterochromatin,organization
R4032 T14147 T14145 pobj organization,of
R4033 T14148 T14144 acomp similar,is
R4034 T14149 T14148 prep to,similar
R4035 T14150 T14149 pobj that,to
R4036 T14151 T14150 acl observed,that
R4037 T14152 T14151 prep in,observed
R4038 T14153 T14154 npadvmod p150CAF,depleted
R4039 T14154 T14158 amod depleted,cells
R4040 T14155 T14153 punct -,p150CAF
R4041 T14156 T14153 nummod 1,p150CAF
R4042 T14157 T14154 punct -,depleted
R4043 T14158 T14152 pobj cells,in
R4044 T14159 T14158 compound ES,cells
R4045 T14160 T14152 punct ", ",in
R4046 T14161 T14152 cc and,in
R4047 T14162 T14152 conj in,in
R4048 T14163 T14164 advmod developmentally,arrested
R4049 T14164 T14165 amod arrested,embryos
R4050 T14165 T14162 pobj embryos,in
R4051 T14166 T14167 nummod 16,cell
R4052 T14167 T14169 nmod cell,stage
R4053 T14168 T14167 punct -,cell
R4054 T14169 T14165 nmod stage,embryos
R4055 T14170 T14165 nmod Chaf1a,embryos
R4056 T14171 T14170 punct −,Chaf1a
R4057 T14172 T14170 punct /,Chaf1a
R4058 T14173 T14170 punct −,Chaf1a
R4059 T14174 T14144 punct .,is
R4060 T14176 T14177 det These,data
R4061 T14177 T14178 nsubj data,show
R4062 T14179 T14180 mark that,involved
R4063 T14180 T14178 ccomp involved,show
R4064 T14181 T14180 nsubjpass CAF,involved
R4065 T14182 T14181 punct -,CAF
R4066 T14183 T14181 nummod 1,CAF
R4067 T14184 T14180 auxpass is,involved
R4068 T14185 T14180 prep in,involved
R4069 T14186 T14185 pcomp setting,in
R4070 T14187 T14186 prt up,setting
R4071 T14188 T14189 amod proper,architecture
R4072 T14189 T14186 dobj architecture,setting
R4073 T14190 T14189 compound heterochromatin,architecture
R4074 T14191 T14186 prep during,setting
R4075 T14192 T14193 det the,divisions
R4076 T14193 T14191 pobj divisions,during
R4077 T14194 T14193 amod first,divisions
R4078 T14195 T14193 compound cell,divisions
R4079 T14196 T14193 prep of,divisions
R4080 T14197 T14198 amod embryonic,life
R4081 T14198 T14196 pobj life,of
R4082 T14199 T14178 punct .,show
R4083 T14201 T14202 prep Given,suggests
R4084 T14203 T14204 det the,importance
R4085 T14204 T14201 pobj importance,Given
R4086 T14205 T14204 prep of,importance
R4087 T14206 T14207 amod nuclear,organization
R4088 T14207 T14205 pobj organization,of
R4089 T14208 T14204 prep in,importance
R4090 T14209 T14210 det the,control
R4091 T14210 T14208 pobj control,in
R4092 T14211 T14210 prep of,control
R4093 T14212 T14213 compound gene,expression
R4094 T14213 T14211 pobj expression,of
R4095 T14214 T14215 punct [,41
R4096 T14215 T14204 parataxis 41,importance
R4097 T14216 T14215 nummod 21,41
R4098 T14217 T14215 punct ",",41
R4099 T14218 T14215 punct ],41
R4100 T14219 T14202 punct ", ",suggests
R4101 T14220 T14221 det this,finding
R4102 T14221 T14202 nsubj finding,suggests
R4103 T14222 T14223 mark that,contributes
R4104 T14223 T14202 ccomp contributes,suggests
R4105 T14224 T14223 nsubj CAF,contributes
R4106 T14225 T14224 punct -,CAF
R4107 T14226 T14224 nummod 1,CAF
R4108 T14227 T14223 prep to,contributes
R4109 T14228 T14229 det the,programs
R4110 T14229 T14227 pobj programs,to
R4111 T14230 T14229 amod coordinated,programs
R4112 T14231 T14229 prep of,programs
R4113 T14232 T14233 compound gene,expression
R4114 T14233 T14231 pobj expression,of
R4115 T14234 T14223 prep during,contributes
R4116 T14235 T14236 amod early,embryogenesis
R4117 T14236 T14234 pobj embryogenesis,during
R4118 T14237 T14202 punct .,suggests
R4119 T14239 T14240 poss Our,findings
R4120 T14240 T14241 nsubj findings,open
R4121 T14242 T14243 amod new,perspectives
R4122 T14243 T14241 dobj perspectives,open
R4123 T14244 T14243 prep in,perspectives
R4124 T14245 T14246 det the,understanding
R4125 T14246 T14244 pobj understanding,in
R4126 T14247 T14246 prep of,understanding
R4127 T14248 T14249 compound chromatin,dynamics
R4128 T14249 T14247 pobj dynamics,of
R4129 T14250 T14241 prep during,open
R4130 T14251 T14252 amod early,development
R4131 T14252 T14250 pobj development,during
R4132 T14253 T14250 cc and,during
R4133 T14254 T14250 conj in,during
R4134 T14255 T14256 amod pluripotent,cells
R4135 T14256 T14254 pobj cells,in
R4136 T14257 T14256 amod embryonic,cells
R4137 T14258 T14241 punct .,open
R4138 T14260 T14261 mark While,focused
R4139 T14261 T14264 advcl focused,point
R4140 T14262 T14263 amod most,studies
R4141 T14263 T14261 nsubj studies,focused
R4142 T14265 T14261 prep on,focused
R4143 T14266 T14267 det the,role
R4144 T14267 T14265 pobj role,on
R4145 T14268 T14267 prep of,role
R4146 T14269 T14270 compound DNA,methylation
R4147 T14270 T14268 pobj methylation,of
R4148 T14271 T14270 cc and,methylation
R4149 T14272 T14273 npadvmod histone,modifying
R4150 T14273 T14274 amod modifying,enzymes
R4151 T14274 T14270 conj enzymes,methylation
R4152 T14275 T14276 punct [,3
R4153 T14276 T14261 parataxis 3,focused
R4154 T14277 T14276 punct ],3
R4155 T14278 T14264 punct ", ",point
R4156 T14279 T14280 poss our,data
R4157 T14280 T14264 nsubj data,point
R4158 T14281 T14264 prep to,point
R4159 T14282 T14283 det the,importance
R4160 T14283 T14281 pobj importance,to
R4161 T14284 T14283 prep of,importance
R4162 T14285 T14286 det the,machinery
R4163 T14286 T14284 pobj machinery,of
R4164 T14287 T14288 compound chromatin,assembly
R4165 T14288 T14286 compound assembly,machinery
R4166 T14289 T14264 punct .,point
R4167 T14291 T14292 nsubj We,show
R4168 T14293 T14294 mark that,provides
R4169 T14294 T14292 ccomp provides,show
R4170 T14295 T14294 prep in,provides
R4171 T14296 T14295 pobj addition,in
R4172 T14297 T14296 prep to,addition
R4173 T14298 T14299 amod assembling,nucleosomes
R4174 T14299 T14297 pobj nucleosomes,to
R4175 T14300 T14294 punct ", ",provides
R4176 T14301 T14294 nsubj CAF,provides
R4177 T14302 T14301 punct -,CAF
R4178 T14303 T14301 nummod 1,CAF
R4179 T14304 T14305 amod spatial,information
R4180 T14305 T14294 dobj information,provides
R4181 T14306 T14304 cc and,spatial
R4182 T14307 T14304 conj epigenetic,spatial
R4183 T14308 T14294 prep to,provides
R4184 T14309 T14310 compound heterochromatin,domains
R4185 T14310 T14308 pobj domains,to
R4186 T14311 T14294 prep in,provides
R4187 T14312 T14313 amod early,embryos
R4188 T14313 T14311 pobj embryos,in
R4189 T14314 T14313 cc and,embryos
R4190 T14315 T14316 compound ES,cells
R4191 T14316 T14313 conj cells,embryos
R4192 T14317 T14292 punct .,show
R4195 T14829 T14828 prep of,Generation
R4196 T14830 T14831 compound Chaf1a,mutant
R4197 T14831 T14829 pobj mutant,of
R4198 T14832 T14831 appos mice,mutant
R4199 T14833 T14832 cc and,mice
R4200 T14834 T14832 conj embryos,mice
R4201 T14835 T14828 punct .,Generation
R4202 T14837 T14838 advcl Using,amplified
R4203 T14839 T14837 dobj PCR,Using
R4204 T14840 T14838 punct ", ",amplified
R4205 T14841 T14838 nsubj we,amplified
R4206 T14842 T14843 nummod two,fragments
R4207 T14843 T14838 dobj fragments,amplified
R4208 T14844 T14843 amod genomic,fragments
R4209 T14845 T14846 punct (,kb
R4210 T14846 T14843 parataxis kb,fragments
R4211 T14847 T14848 quantmod about,3
R4212 T14848 T14846 nummod 3,kb
R4213 T14849 T14846 appos each,kb
R4214 T14850 T14846 punct ),kb
R4215 T14851 T14843 acl flanking,fragments
R4216 T14852 T14853 compound Chaf1a,exon
R4217 T14853 T14851 dobj exon,flanking
R4218 T14854 T14853 nummod 3,exon
R4219 T14855 T14838 punct .,amplified
R4220 T14857 T14858 det These,fragments
R4221 T14858 T14860 nsubjpass fragments,assembled
R4222 T14859 T14858 compound DNA,fragments
R4223 T14861 T14860 auxpass were,assembled
R4224 T14862 T14860 prep by,assembled
R4225 T14863 T14864 amod conventional,cloning
R4226 T14864 T14862 pobj cloning,by
R4227 T14865 T14864 prep with,cloning
R4228 T14866 T14867 det the,cassettes
R4229 T14867 T14865 pobj cassettes,with
R4230 T14868 T14867 nmod neomycin,cassettes
R4231 T14869 T14868 cc and,neomycin
R4232 T14870 T14868 conj DT,neomycin
R4233 T14871 T14870 punct (,DT
R4234 T14872 T14873 compound diphtheria,toxin
R4235 T14873 T14870 appos toxin,DT
R4236 T14874 T14867 punct ),cassettes
R4237 T14875 T14860 punct ", ",assembled
R4238 T14876 T14877 mark as,described
R4239 T14877 T14860 advcl described,assembled
R4240 T14878 T14877 prep in,described
R4241 T14879 T14880 compound Figure,1A
R4242 T14880 T14878 pobj 1A,in
R4243 T14881 T14860 punct .,assembled
R4244 T14883 T14884 det The,construct
R4245 T14884 T14885 nsubjpass construct,transfected
R4246 T14886 T14885 auxpass was,transfected
R4247 T14887 T14885 prep in,transfected
R4248 T14888 T14889 compound ES,cells
R4249 T14889 T14887 pobj cells,in
R4250 T14890 T14885 prep by,transfected
R4251 T14891 T14890 pobj electroporation,by
R4252 T14892 T14885 punct .,transfected
R4253 T14894 T14895 nsubj We,identified
R4254 T14896 T14897 amod recombinant,cells
R4255 T14897 T14895 dobj cells,identified
R4256 T14898 T14897 compound ES,cells
R4257 T14899 T14897 acl carrying,cells
R4258 T14900 T14901 det the,allele
R4259 T14901 T14899 dobj allele,carrying
R4260 T14902 T14901 nmod mutant,allele
R4261 T14903 T14901 nmod Chaf1a tm1Ger,allele
R4262 T14904 T14905 punct (,abbreviated
R4263 T14905 T14903 parataxis abbreviated,Chaf1a tm1Ger
R4264 T14906 T14905 oprd Chaf1a,abbreviated
R4265 T14907 T14906 punct −,Chaf1a
R4266 T14908 T14905 prep in,abbreviated
R4267 T14909 T14910 det the,manuscript
R4268 T14910 T14908 pobj manuscript,in
R4269 T14911 T14905 punct ),abbreviated
R4270 T14912 T14895 prep by,identified
R4271 T14913 T14914 compound Southern,blot
R4272 T14914 T14912 pobj blot,by
R4273 T14915 T14916 punct (,1A
R4274 T14916 T14895 parataxis 1A,identified
R4275 T14917 T14916 compound Figure,1A
R4276 T14918 T14916 punct ),1A
R4277 T14919 T14895 punct .,identified
R4278 T14921 T14922 nsubj We,derived
R4279 T14923 T14924 nmod Chaf1a,mice
R4280 T14924 T14922 dobj mice,derived
R4281 T14925 T14923 punct +,Chaf1a
R4282 T14926 T14923 punct /,Chaf1a
R4283 T14927 T14923 punct −,Chaf1a
R4284 T14928 T14922 prep by,derived
R4285 T14929 T14928 pcomp injecting,by
R4286 T14930 T14931 amod recombined,cells
R4287 T14931 T14929 dobj cells,injecting
R4288 T14932 T14931 compound ES,cells
R4289 T14933 T14929 prep into,injecting
R4290 T14934 T14935 compound C57BL,6N
R4291 T14935 T14937 compound 6N,blastocysts
R4292 T14936 T14935 punct /,6N
R4293 T14937 T14933 pobj blastocysts,into
R4294 T14938 T14922 punct .,derived
R4295 T14940 T14941 compound E4,embryos
R4296 T14941 T14942 nsubjpass embryos,genotyped
R4297 T14943 T14941 acl obtained,embryos
R4298 T14944 T14943 prep from,obtained
R4299 T14945 T14946 det the,intercross
R4300 T14946 T14944 pobj intercross,from
R4301 T14947 T14946 prep of,intercross
R4302 T14948 T14949 nmod Chaf1a,mice
R4303 T14949 T14947 pobj mice,of
R4304 T14950 T14948 punct +,Chaf1a
R4305 T14951 T14948 punct /,Chaf1a
R4306 T14952 T14948 punct −,Chaf1a
R4307 T14953 T14942 auxpass were,genotyped
R4308 T14954 T14942 prep by,genotyped
R4309 T14955 T14956 compound nested,PCR
R4310 T14956 T14958 compound PCR,amplification
R4311 T14957 T14956 punct -,PCR
R4312 T14958 T14954 pobj amplification,by
R4313 T14959 T14942 punct .,genotyped
R4314 T14961 T14962 nsubjpass Embryos,collected
R4315 T14963 T14962 auxpass were,collected
R4316 T14964 T14962 prep in,collected
R4317 T14965 T14966 det a,mix
R4318 T14966 T14964 pobj mix,in
R4319 T14967 T14966 compound PCR,mix
R4320 T14968 T14966 compound reaction,mix
R4321 T14969 T14966 acl containing,mix
R4322 T14970 T14971 nmod oligonucleotide,1
R4323 T14971 T14969 dobj 1,containing
R4324 T14972 T14971 nmod primers,1
R4325 T14973 T14971 punct ", ",1
R4326 T14974 T14971 conj 2,1
R4327 T14975 T14974 punct ", ",2
R4328 T14976 T14974 cc and,2
R4329 T14977 T14974 conj 3,2
R4330 T14978 T14979 punct (,1A
R4331 T14979 T14971 parataxis 1A,1
R4332 T14980 T14979 compound Figure,1A
R4333 T14981 T14979 punct ),1A
R4334 T14982 T14983 dep that,amplify
R4335 T14983 T14971 relcl amplify,1
R4336 T14984 T14985 det the,alleles
R4337 T14985 T14983 dobj alleles,amplify
R4338 T14986 T14987 amod wild,type
R4339 T14987 T14985 nmod type,alleles
R4340 T14988 T14987 punct -,type
R4341 T14989 T14987 cc and,type
R4342 T14990 T14987 conj mutant,type
R4343 T14991 T14962 punct .,collected
R4344 T14993 T14994 prep After,used
R4345 T14995 T14996 nummod 30,cycles
R4346 T14996 T14993 pobj cycles,After
R4347 T14997 T14996 prep of,cycles
R4348 T14998 T14997 pobj amplification,of
R4349 T14999 T14994 punct ", ",used
R4350 T15000 T15001 nummod 1,μl
R4351 T15001 T14994 nsubjpass μl,used
R4352 T15002 T15001 prep of,μl
R4353 T15003 T15004 det each,reaction
R4354 T15004 T15002 pobj reaction,of
R4355 T15005 T15004 compound PCR,reaction
R4356 T15006 T14994 auxpass was,used
R4357 T15007 T14994 prep in,used
R4358 T15008 T15009 det a,round
R4359 T15009 T15007 pobj round,in
R4360 T15010 T15009 amod second,round
R4361 T15011 T15009 prep of,round
R4362 T15012 T15013 compound PCR,amplification
R4363 T15013 T15011 pobj amplification,of
R4364 T15014 T15009 prep with,round
R4365 T15015 T15016 det a,set
R4366 T15016 T15014 pobj set,with
R4367 T15017 T15016 amod new,set
R4368 T15018 T15016 prep of,set
R4369 T15019 T15020 compound oligonucleotide,primers
R4370 T15020 T15018 pobj primers,of
R4371 T15021 T14994 punct .,used
R4372 T15023 T15024 prep After,run
R4373 T15025 T15026 nummod 30,cycles
R4374 T15026 T15023 pobj cycles,After
R4375 T15027 T15026 prep of,cycles
R4376 T15028 T15027 pobj amplification,of
R4377 T15029 T15024 punct ", ",run
R4378 T15030 T15031 compound PCR,reactions
R4379 T15031 T15024 nsubjpass reactions,run
R4380 T15032 T15024 auxpass were,run
R4381 T15033 T15024 prep onto,run
R4382 T15034 T15035 det an,gel
R4383 T15035 T15033 pobj gel,onto
R4384 T15036 T15035 compound agarose,gel
R4385 T15037 T15035 punct ", ",gel
R4386 T15038 T15039 dep which,revealed
R4387 T15039 T15035 relcl revealed,gel
R4388 T15040 T15041 det the,presence
R4389 T15041 T15039 dobj presence,revealed
R4390 T15042 T15041 prep of,presence
R4391 T15043 T15044 det the,alleles
R4392 T15044 T15042 pobj alleles,of
R4393 T15045 T15046 amod wild,type
R4394 T15046 T15044 nmod type,alleles
R4395 T15047 T15046 punct -,type
R4396 T15048 T15049 punct (,bp
R4397 T15049 T15046 parataxis bp,type
R4398 T15050 T15049 nummod 150,bp
R4399 T15051 T15049 punct ),bp
R4400 T15052 T15046 cc and,type
R4401 T15053 T15046 conj recombinant,type
R4402 T15054 T15055 punct (,bp
R4403 T15055 T15053 parataxis bp,recombinant
R4404 T15056 T15055 nummod 200,bp
R4405 T15057 T15055 punct ),bp
R4406 T15058 T15024 punct .,run
R4407 T15693 T15694 nmod P150CAF,depletion
R4408 T15695 T15693 punct -,P150CAF
R4409 T15696 T15693 nummod 1,P150CAF
R4410 T15697 T15694 prep by,depletion
R4411 T15698 T15697 pobj RNAi,by
R4412 T15699 T15694 punct .,depletion
R4413 T15701 T15702 det The,vector
R4414 T15702 T15705 nsubj vector,contains
R4415 T15703 T15702 compound RNAi,vector
R4416 T15704 T15702 compound plasmid,vector
R4417 T15706 T15707 dep that,used
R4418 T15707 T15702 relcl used,vector
R4419 T15708 T15707 nsubj we,used
R4420 T15709 T15707 prep in,used
R4421 T15710 T15711 det this,study
R4422 T15711 T15709 pobj study,in
R4423 T15712 T15713 det the,promoter
R4424 T15713 T15705 dobj promoter,contains
R4425 T15714 T15713 compound mouse,promoter
R4426 T15715 T15713 compound H1,promoter
R4427 T15716 T15713 cc and,promoter
R4428 T15717 T15718 det a,gene
R4429 T15718 T15713 conj gene,promoter
R4430 T15719 T15718 compound puromycin,gene
R4431 T15720 T15718 compound selection,gene
R4432 T15721 T15722 punct (,data
R4433 T15722 T15705 parataxis data,contains
R4434 T15723 T15722 dep SB,data
R4435 T15724 T15723 cc and,SB
R4436 T15725 T15723 conj MG,SB
R4437 T15726 T15722 punct ", ",data
R4438 T15727 T15722 amod unpublished,data
R4439 T15728 T15722 punct ),data
R4440 T15729 T15705 punct .,contains
R4441 T15731 T15732 nsubj We,characterized
R4442 T15732 T15733 ccomp characterized,is
R4443 T15734 T15732 prep in,characterized
R4444 T15735 T15734 pobj detail,in
R4445 T15736 T15737 det the,properties
R4446 T15737 T15732 dobj properties,characterized
R4447 T15738 T15737 prep of,properties
R4448 T15739 T15740 det this,vector
R4449 T15740 T15738 pobj vector,of
R4450 T15741 T15740 amod new,vector
R4451 T15742 T15732 advcl using,characterized
R4452 T15743 T15744 det a,gene
R4453 T15744 T15742 dobj gene,using
R4454 T15745 T15744 compound GFP,gene
R4455 T15746 T15744 compound target,gene
R4456 T15747 T15744 cc and,gene
R4457 T15748 T15744 conj FACS,gene
R4458 T15749 T15733 punct : ,is
R4459 T15750 T15733 nsubj Extinction,is
R4460 T15751 T15750 prep of,Extinction
R4461 T15752 T15753 compound target,genes
R4462 T15753 T15751 pobj genes,of
R4463 T15754 T15750 prep in,Extinction
R4464 T15755 T15756 compound ES,cells
R4465 T15756 T15754 pobj cells,in
R4466 T15757 T15758 advmod highly,efficient
R4467 T15758 T15733 acomp efficient,is
R4468 T15759 T15733 prep in,is
R4469 T15760 T15761 nummod 70,%
R4470 T15761 T15759 pobj %,in
R4471 T15762 T15761 prep of,%
R4472 T15763 T15764 det the,cells
R4473 T15764 T15762 pobj cells,of
R4474 T15765 T15733 punct ", ",is
R4475 T15766 T15733 conj of,is
R4476 T15767 T15768 amod intermediate,efficiency
R4477 T15768 T15766 pobj efficiency,of
R4478 T15769 T15766 prep in,of
R4479 T15770 T15771 nummod 15,%
R4480 T15771 T15769 pobj %,in
R4481 T15772 T15766 punct ", ",of
R4482 T15773 T15766 cc and,of
R4483 T15774 T15766 conj inefficient,of
R4484 T15775 T15774 prep in,inefficient
R4485 T15776 T15777 det the,%
R4486 T15777 T15775 pobj %,in
R4487 T15778 T15777 amod remaining,%
R4488 T15779 T15777 nummod 15,%
R4489 T15780 T15777 prep of,%
R4490 T15781 T15782 compound cells,analysis
R4491 T15782 T15780 pobj analysis,of
R4492 T15783 T15733 punct .,is
R4493 T15785 T15786 det The,sequence
R4494 T15786 T15787 nsubjpass sequence,cloned
R4495 T15788 T15786 prep of,sequence
R4496 T15789 T15790 nmod p150CAF,duplex
R4497 T15790 T15788 pobj duplex,of
R4498 T15791 T15789 punct -,p150CAF
R4499 T15792 T15789 nummod 1,p150CAF
R4500 T15793 T15790 nmod siRNA,duplex
R4501 T15794 T15793 punct (,siRNA
R4502 T15795 T15796 amod short,RNA
R4503 T15796 T15793 appos RNA,siRNA
R4504 T15797 T15796 amod interfering,RNA
R4505 T15798 T15790 punct ),duplex
R4506 T15799 T15800 punct [,16
R4507 T15800 T15786 parataxis 16,sequence
R4508 T15801 T15800 punct ],16
R4509 T15802 T15787 auxpass was,cloned
R4510 T15803 T15787 prep into,cloned
R4511 T15804 T15805 det this,plasmid
R4512 T15805 T15803 pobj plasmid,into
R4513 T15806 T15787 punct .,cloned
R4514 T15808 T15809 det The,vector
R4515 T15809 T15811 nsubj vector,expressed
R4516 T15810 T15809 compound control,vector
R4517 T15812 T15813 det a,siRNA
R4518 T15813 T15811 dobj siRNA,expressed
R4519 T15814 T15815 dep that,targets
R4520 T15815 T15813 relcl targets,siRNA
R4521 T15816 T15817 compound GFP,degradation
R4522 T15817 T15815 dobj degradation,targets
R4523 T15818 T15817 compound RNA,degradation
R4524 T15819 T15811 punct .,expressed
R4525 T15821 T15822 compound ES,cells
R4526 T15822 T15823 nsubjpass cells,transfected
R4527 T15824 T15823 auxpass were,transfected
R4528 T15825 T15823 prep by,transfected
R4529 T15826 T15825 pobj electroporation,by
R4530 T15827 T15823 prep with,transfected
R4531 T15828 T15829 det the,vector
R4532 T15829 T15827 pobj vector,with
R4533 T15830 T15829 compound RNA,vector
R4534 T15831 T15829 compound plasmid,vector
R4535 T15832 T15823 punct ", ",transfected
R4536 T15833 T15823 conj seeded,transfected
R4537 T15834 T15833 prep onto,seeded
R4538 T15835 T15836 npadvmod gelatin,coated
R4539 T15836 T15838 amod coated,slides
R4540 T15837 T15836 punct -,coated
R4541 T15838 T15834 pobj slides,onto
R4542 T15839 T15833 punct ", ",seeded
R4543 T15840 T15833 cc and,seeded
R4544 T15841 T15833 conj cultured,seeded
R4545 T15842 T15841 prep for,cultured
R4546 T15843 T15844 nummod 24,h
R4547 T15844 T15842 pobj h,for
R4548 T15845 T15841 prep in,cultured
R4549 T15846 T15847 det the,absence
R4550 T15847 T15845 pobj absence,in
R4551 T15848 T15847 prep of,absence
R4552 T15849 T15848 pobj selection,of
R4553 T15850 T15823 punct .,transfected
R4554 T15852 T15853 nsubjpass Puromycin,added
R4555 T15854 T15855 punct (,μg
R4556 T15855 T15852 parataxis μg,Puromycin
R4557 T15856 T15855 nummod 2,μg
R4558 T15857 T15858 punct /,ml
R4559 T15858 T15855 prep ml,μg
R4560 T15859 T15855 punct ),μg
R4561 T15860 T15853 auxpass was,added
R4562 T15861 T15853 prep to,added
R4563 T15862 T15863 det the,medium
R4564 T15863 T15861 pobj medium,to
R4565 T15864 T15863 compound culture,medium
R4566 T15865 T15853 cc and,added
R4567 T15866 T15867 nsubjpass cells,cultured
R4568 T15867 T15853 conj cultured,added
R4569 T15868 T15867 auxpass were,cultured
R4570 T15869 T15867 prep for,cultured
R4571 T15870 T15871 det an,period
R4572 T15871 T15869 pobj period,for
R4573 T15872 T15871 amod additional,period
R4574 T15873 T15874 nummod 48,h
R4575 T15874 T15871 compound h,period
R4576 T15875 T15874 punct -,h
R4577 T15876 T15867 punct .,cultured
R4578 T15878 T15879 advcl Using,reveals
R4579 T15880 T15881 det the,vector
R4580 T15881 T15878 dobj vector,Using
R4581 T15882 T15881 nmod p150CAF,vector
R4582 T15883 T15882 punct -,p150CAF
R4583 T15884 T15882 nummod 1,p150CAF
R4584 T15885 T15881 compound RNAi,vector
R4585 T15886 T15879 punct ", ",reveals
R4586 T15887 T15888 compound IF,microscopy
R4587 T15888 T15889 compound microscopy,quantification
R4588 T15889 T15879 nsubj quantification,reveals
R4589 T15890 T15891 det a,depletion
R4590 T15891 T15879 dobj depletion,reveals
R4591 T15892 T15891 amod complete,depletion
R4592 T15893 T15891 nmod CAF,depletion
R4593 T15894 T15893 punct -,CAF
R4594 T15895 T15893 nummod 1,CAF
R4595 T15896 T15879 prep in,reveals
R4596 T15897 T15898 amod most,cells
R4597 T15898 T15896 pobj cells,in
R4598 T15899 T15900 punct (,S1B
R4599 T15900 T15879 parataxis S1B,reveals
R4600 T15901 T15900 compound Figure,S1B
R4601 T15902 T15900 punct ),S1B
R4602 T15903 T15879 punct .,reveals
R4603 T15905 T15906 compound Western,blot
R4604 T15906 T15907 compound blot,analysis
R4605 T15907 T15908 nsubj analysis,reveals
R4606 T15909 T15910 punct (,S1A
R4607 T15910 T15907 parataxis S1A,analysis
R4608 T15911 T15910 compound Figure,S1A
R4609 T15912 T15910 punct ),S1A
R4610 T15913 T15914 amod residual,expression
R4611 T15914 T15908 dobj expression,reveals
R4612 T15915 T15914 nmod p150CAF,expression
R4613 T15916 T15915 punct -,p150CAF
R4614 T15917 T15915 nummod 1,p150CAF
R4615 T15918 T15908 punct ", ",reveals
R4616 T15919 T15920 mark as,expected
R4617 T15920 T15908 advcl expected,reveals
R4618 T15921 T15920 prep from,expected
R4619 T15922 T15923 det the,%
R4620 T15923 T15921 pobj %,from
R4621 T15924 T15923 nummod 15,%
R4622 T15925 T15923 prep of,%
R4623 T15926 T15925 pobj cells,of
R4624 T15927 T15928 dep that,inhibit
R4625 T15928 T15923 relcl inhibit,%
R4626 T15929 T15928 aux do,inhibit
R4627 T15930 T15928 neg not,inhibit
R4628 T15931 T15932 det the,gene
R4629 T15932 T15928 dobj gene,inhibit
R4630 T15933 T15932 compound target,gene
R4631 T15934 T15908 punct .,reveals
R4632 T15936 T15937 nsubjpass MEFs,transfected
R4633 T15938 T15939 punct (,passage
R4634 T15939 T15936 parataxis passage,MEFs
R4635 T15940 T15939 nummod 3,passage
R4636 T15941 T15939 punct ", ",passage
R4637 T15942 T15943 nummod 90,%
R4638 T15943 T15944 compound %,confluence
R4639 T15944 T15939 appos confluence,passage
R4640 T15945 T15939 punct ),passage
R4641 T15946 T15937 auxpass were,transfected
R4642 T15947 T15937 prep during,transfected
R4643 T15948 T15949 nummod 4,h
R4644 T15949 T15947 pobj h,during
R4645 T15950 T15949 prep with,h
R4646 T15951 T15952 det the,vector
R4647 T15952 T15950 pobj vector,with
R4648 T15953 T15952 compound RNAi,vector
R4649 T15954 T15952 compound plasmid,vector
R4650 T15955 T15937 advcl using,transfected
R4651 T15956 T15955 dobj Lipofectamine,using
R4652 T15957 T15956 nummod 2000,Lipofectamine
R4653 T15958 T15959 punct (,Invitrogene
R4654 T15959 T15956 parataxis Invitrogene,Lipofectamine
R4655 T15960 T15959 punct ", ",Invitrogene
R4656 T15961 T15959 npadvmod Carlsbad,Invitrogene
R4657 T15962 T15959 punct ", ",Invitrogene
R4658 T15963 T15959 npadvmod California,Invitrogene
R4659 T15964 T15959 punct ", ",Invitrogene
R4660 T15965 T15966 compound United,States
R4661 T15966 T15959 npadvmod States,Invitrogene
R4662 T15967 T15959 punct ),Invitrogene
R4663 T15968 T15937 prep according,transfected
R4664 T15969 T15968 prep to,according
R4665 T15970 T15971 poss manufacturer,conditions
R4666 T15971 T15969 pobj conditions,to
R4667 T15972 T15970 case 's,manufacturer
R4668 T15973 T15937 punct .,transfected
R4669 T15975 T15976 nsubjpass Cells,trypsinized
R4670 T15977 T15976 auxpass were,trypsinized
R4671 T15978 T15976 punct ", ",trypsinized
R4672 T15979 T15976 conj plated,trypsinized
R4673 T15980 T15979 prep at,plated
R4674 T15981 T15982 quantmod 1,3
R4675 T15982 T15984 nummod 3,dilution
R4676 T15983 T15982 punct /,3
R4677 T15984 T15980 pobj dilution,at
R4678 T15985 T15979 punct ", ",plated
R4679 T15986 T15979 cc and,plated
R4680 T15987 T15979 conj cultured,plated
R4681 T15988 T15987 prep for,cultured
R4682 T15989 T15990 nummod 48,h
R4683 T15990 T15988 pobj h,for
R4684 T15991 T15987 prep in,cultured
R4685 T15992 T15993 det the,presence
R4686 T15993 T15991 pobj presence,in
R4687 T15994 T15993 prep of,presence
R4688 T15995 T15994 pobj puromycin,of
R4689 T15996 T15976 punct .,trypsinized
R4690 T16173 T16174 compound Cell,lines
R4691 T16175 T16174 punct .,lines
R4692 T16177 T16178 nmod AT,cells
R4693 T16178 T16182 nsubjpass cells,used
R4694 T16179 T16177 punct -,AT
R4695 T16180 T16177 nummod 1,AT
R4696 T16181 T16178 compound ES,cells
R4697 T16183 T16184 punct [,42
R4698 T16184 T16178 parataxis 42,cells
R4699 T16185 T16184 punct ],42
R4700 T16186 T16187 punct (,gift
R4701 T16187 T16178 parataxis gift,cells
R4702 T16188 T16187 det a,gift
R4703 T16189 T16187 prep of,gift
R4704 T16190 T16191 compound M.,Vernet
R4705 T16191 T16189 pobj Vernet,of
R4706 T16192 T16187 punct ),gift
R4707 T16193 T16182 auxpass were,used
R4708 T16194 T16182 prep for,used
R4709 T16195 T16196 compound gene,targeting
R4710 T16196 T16194 pobj targeting,for
R4711 T16197 T16182 punct .,used
R4712 T16199 T16200 compound LTM7,cells
R4713 T16200 T16202 nsubjpass cells,used
R4714 T16201 T16200 compound ES,cells
R4715 T16203 T16202 auxpass were,used
R4716 T16204 T16202 prep in,used
R4717 T16205 T16206 det all,experiments
R4718 T16206 T16204 pobj experiments,in
R4719 T16207 T16206 compound RNAi,experiments
R4720 T16208 T16202 punct .,used
R4721 T16210 T16211 nsubj We,derived
R4722 T16212 T16213 det this,line
R4723 T16213 T16211 dobj line,derived
R4724 T16214 T16213 compound cell,line
R4725 T16215 T16211 prep from,derived
R4726 T16216 T16217 punct (,C57BL
R4727 T16217 T16218 nmod C57BL,females
R4728 T16218 T16215 pobj females,from
R4729 T16219 T16217 punct /,C57BL
R4730 T16220 T16217 nummod 6,C57BL
R4731 T16221 T16217 punct ×,C57BL
R4732 T16222 T16217 appos 129,C57BL
R4733 T16223 T16217 punct ),C57BL
R4734 T16224 T16218 compound F1,females
R4735 T16225 T16218 acl bred,females
R4736 T16226 T16225 prep with,bred
R4737 T16227 T16228 compound C3H,HeJ
R4738 T16228 T16230 compound HeJ,males
R4739 T16229 T16228 punct /,HeJ
R4740 T16230 T16226 pobj males,with
R4741 T16231 T16211 punct .,derived
R4742 T16233 T16234 nsubj LTM7,are
R4743 T16235 T16236 compound XX,cells
R4744 T16236 T16234 attr cells,are
R4745 T16237 T16236 compound ES,cells
R4746 T16238 T16236 punct ", ",cells
R4747 T16239 T16236 amod competent,cells
R4748 T16240 T16239 prep for,competent
R4749 T16241 T16242 compound germ,line
R4750 T16242 T16243 compound line,transmission
R4751 T16243 T16240 pobj transmission,for
R4752 T16244 T16234 punct .,are
R4753 T16246 T16247 amod Primary,MEFs
R4754 T16247 T16248 nsubjpass MEFs,derived
R4755 T16249 T16248 auxpass were,derived
R4756 T16250 T16248 prep from,derived
R4757 T16251 T16252 compound E13,embryos
R4758 T16252 T16250 pobj embryos,from
R4759 T16253 T16254 mark as,described
R4760 T16254 T16248 advcl described,derived
R4761 T16255 T16254 prep in,described
R4762 T16256 T16255 punct [,in
R4763 T16257 T16255 pobj 43,in
R4764 T16258 T16248 punct ],derived
R4765 T16259 T16248 punct .,derived
R4766 T16588 T16587 punct .,Immunofluorescence
R4767 T16590 T16591 nsubjpass Cells,fixed
R4768 T16592 T16591 auxpass were,fixed
R4769 T16593 T16591 prep for,fixed
R4770 T16594 T16595 nummod 20,min
R4771 T16595 T16593 pobj min,for
R4772 T16596 T16591 prep in,fixed
R4773 T16597 T16596 pobj PBS,in
R4774 T16598 T16591 prep with,fixed
R4775 T16599 T16600 nummod 4,%
R4776 T16600 T16601 compound %,paraformaldehyde
R4777 T16601 T16598 pobj paraformaldehyde,with
R4778 T16602 T16591 punct ", ",fixed
R4779 T16603 T16591 cc and,fixed
R4780 T16604 T16605 nsubjpass immunodetection,performed
R4781 T16605 T16591 conj performed,fixed
R4782 T16606 T16605 auxpass was,performed
R4783 T16607 T16608 mark as,described
R4784 T16608 T16605 advcl described,performed
R4785 T16609 T16608 advmod previously,described
R4786 T16610 T16611 punct [,44
R4787 T16611 T16605 parataxis 44,performed
R4788 T16612 T16611 punct ],44
R4789 T16613 T16605 punct .,performed
R4790 T16615 T16616 compound E4,embryos
R4791 T16616 T16617 nsubjpass embryos,collected
R4792 T16618 T16617 auxpass were,collected
R4793 T16619 T16617 cc and,collected
R4794 T16620 T16617 conj treated,collected
R4795 T16621 T16620 prep with,treated
R4796 T16622 T16623 compound tyrode,acid
R4797 T16623 T16621 pobj acid,with
R4798 T16624 T16625 aux to,remove
R4799 T16625 T16620 advcl remove,treated
R4800 T16626 T16627 det the,pellucida
R4801 T16627 T16625 dobj pellucida,remove
R4802 T16628 T16627 compound zona,pellucida
R4803 T16629 T16620 punct ", ",treated
R4804 T16630 T16620 conj deposited,treated
R4805 T16631 T16630 prep onto,deposited
R4806 T16632 T16633 compound microscope,slides
R4807 T16633 T16631 pobj slides,onto
R4808 T16634 T16630 punct ", ",deposited
R4809 T16635 T16630 cc and,deposited
R4810 T16636 T16630 conj processed,deposited
R4811 T16637 T16636 prep for,processed
R4812 T16638 T16637 pobj immunostaining,for
R4813 T16639 T16640 mark as,described
R4814 T16640 T16636 advcl described,processed
R4815 T16641 T16640 prep for,described
R4816 T16642 T16643 compound ES,cells
R4817 T16643 T16641 pobj cells,for
R4818 T16644 T16617 punct .,collected
R4819 T16646 T16647 nsubjpass Antibodies,used
R4820 T16648 T16646 appos anti-HP1α,Antibodies
R4821 T16649 T16650 punct (,2HP1H5
R4822 T16650 T16648 parataxis 2HP1H5,anti-HP1α
R4823 T16651 T16650 punct ", ",2HP1H5
R4824 T16652 T16650 npadvmod Euromedex,2HP1H5
R4825 T16653 T16650 punct ", ",2HP1H5
R4826 T16654 T16650 npadvmod France,2HP1H5
R4827 T16655 T16650 punct ),2HP1H5
R4828 T16656 T16648 punct ", ",anti-HP1α
R4829 T16657 T16648 conj anti-H4K20me3,anti-HP1α
R4830 T16658 T16659 punct (,Abcam
R4831 T16659 T16657 parataxis Abcam,anti-H4K20me3
R4832 T16660 T16659 punct ", ",Abcam
R4833 T16661 T16659 npadvmod Cambridge,Abcam
R4834 T16662 T16659 punct ", ",Abcam
R4835 T16663 T16664 compound United,Kingdom
R4836 T16664 T16659 npadvmod Kingdom,Abcam
R4837 T16665 T16659 punct ),Abcam
R4838 T16666 T16657 punct ", ",anti-H4K20me3
R4839 T16667 T16657 conj anti-BrdU,anti-H4K20me3
R4840 T16668 T16669 punct (,DakoCytomation
R4841 T16669 T16667 parataxis DakoCytomation,anti-BrdU
R4842 T16670 T16669 punct ", ",DakoCytomation
R4843 T16671 T16669 npadvmod Glostrup,DakoCytomation
R4844 T16672 T16669 punct ", ",DakoCytomation
R4845 T16673 T16669 npadvmod Denmark,DakoCytomation
R4846 T16674 T16669 punct ),DakoCytomation
R4847 T16675 T16667 punct ", ",anti-BrdU
R4848 T16676 T16667 conj anti-PCNA,anti-BrdU
R4849 T16677 T16678 punct (,DakoCytomation
R4850 T16678 T16676 parataxis DakoCytomation,anti-PCNA
R4851 T16679 T16678 punct ),DakoCytomation
R4852 T16680 T16676 punct ", ",anti-PCNA
R4853 T16681 T16676 cc and,anti-PCNA
R4854 T16682 T16676 conj anti-PML,anti-PCNA
R4855 T16683 T16684 punct (,Biotechnology
R4856 T16684 T16682 parataxis Biotechnology,anti-PML
R4857 T16685 T16684 compound Upstate,Biotechnology
R4858 T16686 T16684 punct ", ",Biotechnology
R4859 T16687 T16688 compound Lake,Placid
R4860 T16688 T16684 npadvmod Placid,Biotechnology
R4861 T16689 T16684 punct ", ",Biotechnology
R4862 T16690 T16691 compound New,York
R4863 T16691 T16684 npadvmod York,Biotechnology
R4864 T16692 T16684 punct ", ",Biotechnology
R4865 T16693 T16694 compound United,States
R4866 T16694 T16684 npadvmod States,Biotechnology
R4867 T16695 T16684 punct ),Biotechnology
R4868 T16696 T16647 auxpass were,used
R4869 T16697 T16647 advmod all,used
R4870 T16698 T16647 prep at,used
R4871 T16699 T16700 nummod 1,dilution
R4872 T16700 T16698 pobj dilution,at
R4873 T16701 T16702 punct /,1000
R4874 T16702 T16699 prep 1000,1
R4875 T16703 T16647 punct .,used
R4876 T16705 T16706 nmod Antibodies,p150CAF1
R4877 T16706 T16708 nsubjpass p150CAF1,used
R4878 T16707 T16706 amod anti-mouse,p150CAF1
R4879 T16709 T16710 punct [,16
R4880 T16710 T16706 parataxis 16,p150CAF1
R4881 T16711 T16710 punct ],16
R4882 T16712 T16706 cc and,p150CAF1
R4883 T16713 T16706 conj anti-H3K9me3,p150CAF1
R4884 T16714 T16715 punct (,Biotechnology
R4885 T16715 T16713 parataxis Biotechnology,anti-H3K9me3
R4886 T16716 T16715 compound Upstate,Biotechnology
R4887 T16717 T16715 punct ),Biotechnology
R4888 T16718 T16708 auxpass were,used
R4889 T16719 T16708 prep at,used
R4890 T16720 T16719 pobj 1,at
R4891 T16721 T16722 punct /,250
R4892 T16722 T16720 prep 250,1
R4893 T16723 T16720 cc and,1
R4894 T16724 T16720 conj 1,1
R4895 T16725 T16726 punct /,500
R4896 T16726 T16724 prep 500,1
R4897 T16727 T16708 punct ", ",used
R4898 T16728 T16708 advmod respectively,used
R4899 T16729 T16708 punct .,used
R4900 T16731 T16732 det All,antibodies
R4901 T16732 T16734 nsubjpass antibodies,purchased
R4902 T16733 T16732 amod secondary,antibodies
R4903 T16735 T16734 auxpass were,purchased
R4904 T16736 T16734 prep from,purchased
R4905 T16737 T16738 compound Molecular,Probes
R4906 T16738 T16736 pobj Probes,from
R4907 T16739 T16740 punct (,Sunnyvale
R4908 T16740 T16738 parataxis Sunnyvale,Probes
R4909 T16741 T16740 punct ", ",Sunnyvale
R4910 T16742 T16740 npadvmod California,Sunnyvale
R4911 T16743 T16740 punct ", ",Sunnyvale
R4912 T16744 T16745 compound United,States
R4913 T16745 T16740 npadvmod States,Sunnyvale
R4914 T16746 T16740 punct ),Sunnyvale
R4915 T16747 T16734 punct .,purchased
R4916 T16924 T16925 compound Western,blot
R4917 T16925 T16926 compound blot,analysis
R4918 T16927 T16926 punct .,analysis
R4919 T16929 T16930 nsubjpass Cells,lysed
R4920 T16931 T16930 auxpass were,lysed
R4921 T16932 T16930 prep in,lysed
R4922 T16933 T16934 compound Laemli,buffer
R4923 T16934 T16932 pobj buffer,in
R4924 T16935 T16930 cc and,lysed
R4925 T16936 T16930 conj run,lysed
R4926 T16937 T16936 prep onto,run
R4927 T16938 T16939 det a,gel
R4928 T16939 T16937 pobj gel,onto
R4929 T16940 T16941 nummod 4,%
R4930 T16941 T16939 nmod %,gel
R4931 T16942 T16943 punct –,%
R4932 T16943 T16941 prep %,%
R4933 T16944 T16943 nummod 12,%
R4934 T16945 T16939 compound SDS,gel
R4935 T16946 T16939 compound PAGE,gel
R4936 T16947 T16939 compound gradient,gel
R4937 T16948 T16930 punct .,lysed
R4938 T16950 T16951 nsubj We,used
R4939 T16952 T16951 dobj antibodies,used
R4940 T16953 T16952 prep against,antibodies
R4941 T16954 T16953 pobj p150CAF,against
R4942 T16955 T16954 punct -,p150CAF
R4943 T16956 T16954 nummod 1,p150CAF
R4944 T16957 T16958 punct (,dilution
R4945 T16958 T16954 parataxis dilution,p150CAF
R4946 T16959 T16958 punct [,dilution
R4947 T16960 T16958 dep 16,dilution
R4948 T16961 T16958 punct ],dilution
R4949 T16962 T16958 punct ;,dilution
R4950 T16963 T16958 npadvmod 1,dilution
R4951 T16964 T16965 punct /,500
R4952 T16965 T16963 prep 500,1
R4953 T16966 T16958 punct ),dilution
R4954 T16967 T16954 punct ", ",p150CAF
R4955 T16968 T16954 conj HP1α,p150CAF
R4956 T16969 T16970 punct (,1
R4957 T16970 T16968 parataxis 1,HP1α
R4958 T16971 T16970 dep 2G9,1
R4959 T16972 T16970 punct ", ",1
R4960 T16973 T16970 dep Euromedex,1
R4961 T16974 T16970 punct ;,1
R4962 T16975 T16976 punct /,500
R4963 T16976 T16970 prep 500,1
R4964 T16977 T16970 punct ),1
R4965 T16978 T16968 punct ", ",HP1α
R4966 T16979 T16980 compound Histone,H3
R4967 T16980 T16968 conj H3,HP1α
R4968 T16981 T16982 punct (,1
R4969 T16982 T16980 parataxis 1,H3
R4970 T16983 T16982 dep Abcam,1
R4971 T16984 T16982 punct ;,1
R4972 T16985 T16986 punct /,500
R4973 T16986 T16982 prep 500,1
R4974 T16987 T16982 punct ),1
R4975 T16988 T16980 punct ", ",H3
R4976 T16989 T16980 conj H3K9me3,H3
R4977 T16990 T16991 punct (,1
R4978 T16991 T16989 parataxis 1,H3K9me3
R4979 T16992 T16991 dep Upstate,1
R4980 T16993 T16991 punct ;,1
R4981 T16994 T16995 punct /,500
R4982 T16995 T16991 prep 500,1
R4983 T16996 T16991 punct ),1
R4984 T16997 T16989 cc and,H3K9me3
R4985 T16998 T16999 compound β,actin
R4986 T16999 T16989 conj actin,H3K9me3
R4987 T17000 T16999 punct -,actin
R4988 T17001 T17002 punct (,1
R4989 T17002 T16999 parataxis 1,actin
R4990 T17003 T17002 dep Upstate,1
R4991 T17004 T17002 punct ;,1
R4992 T17005 T17006 punct /,000
R4993 T17006 T17002 prep 000,1
R4994 T17007 T17006 nummod 40,000
R4995 T17008 T17002 punct ),1
R4996 T17009 T16951 punct .,used
R4997 T17171 T17172 compound DNA,FISH
R4998 T17173 T17172 punct .,FISH
R4999 T17175 T17176 nsubjpass Probes,described
R5000 T17177 T17176 auxpass were,described
R5001 T17178 T17176 advmod previously,described
R5002 T17179 T17180 punct [,20
R5003 T17180 T17176 parataxis 20,described
R5004 T17181 T17180 punct ],20
R5005 T17182 T17176 punct .,described
R5006 T17184 T17185 nmod Biotin,dUTP
R5007 T17185 T17189 npadvmod dUTP,labeled
R5008 T17186 T17185 punct -,dUTP
R5009 T17187 T17185 nummod 16,dUTP
R5010 T17188 T17185 punct -,dUTP
R5011 T17189 T17203 amod labeled,probes
R5012 T17190 T17185 cc or,dUTP
R5013 T17191 T17192 nmod Digoxigenin,dUTP
R5014 T17192 T17185 conj dUTP,dUTP
R5015 T17193 T17192 punct -,dUTP
R5016 T17194 T17192 nummod 11,dUTP
R5017 T17195 T17192 punct -,dUTP
R5018 T17196 T17197 punct (,Roche
R5019 T17197 T17192 parataxis Roche,dUTP
R5020 T17198 T17197 punct ", ",Roche
R5021 T17199 T17197 npadvmod Basel,Roche
R5022 T17200 T17197 punct ", ",Roche
R5023 T17201 T17197 npadvmod Switzerland,Roche
R5024 T17202 T17197 punct ),Roche
R5025 T17203 T17204 nsubjpass probes,generated
R5026 T17205 T17204 auxpass were,generated
R5027 T17206 T17204 prep by,generated
R5028 T17207 T17208 compound nick,translation
R5029 T17208 T17206 pobj translation,by
R5030 T17209 T17210 punct (,Roche
R5031 T17210 T17204 parataxis Roche,generated
R5032 T17211 T17210 punct ),Roche
R5033 T17212 T17204 cc and,generated
R5034 T17213 T17214 nsubj FISH,performed
R5035 T17214 T17204 conj performed,generated
R5036 T17215 T17216 mark as,described
R5037 T17216 T17214 advcl described,performed
R5038 T17217 T17218 punct [,20
R5039 T17218 T17214 parataxis 20,performed
R5040 T17219 T17218 punct ],20
R5041 T17220 T17214 punct .,performed
R5042 T17222 T17223 compound Image,acquisition
R5043 T17223 T17224 nsubjpass acquisition,performed
R5044 T17225 T17224 auxpass was,performed
R5045 T17226 T17224 prep with,performed
R5046 T17227 T17228 det the,microscope
R5047 T17228 T17226 pobj microscope,with
R5048 T17229 T17230 compound Deltavision,RT
R5049 T17230 T17228 compound RT,microscope
R5050 T17231 T17232 punct (,objective
R5051 T17232 T17228 parataxis objective,microscope
R5052 T17233 T17232 dep 100,objective
R5053 T17234 T17233 punct ×,100
R5054 T17235 T17232 punct ", ",objective
R5055 T17236 T17232 nummod 1.4,objective
R5056 T17237 T17232 compound NA,objective
R5057 T17238 T17232 punct ),objective
R5058 T17239 T17224 punct ", ",performed
R5059 T17240 T17241 nsubjpass images,deconvoluted
R5060 T17241 T17224 conj deconvoluted,performed
R5061 T17242 T17241 auxpass were,deconvoluted
R5062 T17243 T17241 punct ", ",deconvoluted
R5063 T17244 T17241 cc and,deconvoluted
R5064 T17245 T17246 compound fluorescence,profiles
R5065 T17246 T17247 nsubj profiles,measured
R5066 T17247 T17241 conj measured,deconvoluted
R5067 T17248 T17247 prep along,measured
R5068 T17249 T17250 det an,line
R5069 T17250 T17248 pobj line,along
R5070 T17251 T17250 amod arbitrary,line
R5071 T17252 T17247 advcl using,measured
R5072 T17253 T17252 dobj SoftWorx,using
R5073 T17254 T17247 punct .,measured
R5074 T17929 T17930 compound Nuclei,preparation
R5075 T17931 T17930 punct ", ",preparation
R5076 T17932 T17933 compound nuclease,digestion
R5077 T17933 T17930 conj digestion,preparation
R5078 T17934 T17933 punct ", ",digestion
R5079 T17935 T17933 cc and,digestion
R5080 T17936 T17937 amod biochemical,analysis
R5081 T17937 T17933 conj analysis,digestion
R5082 T17938 T17937 prep of,analysis
R5083 T17939 T17938 pobj chromatin,of
R5084 T17940 T17937 punct .,analysis
R5085 T17942 T17943 compound ES,cells
R5086 T17943 T17944 nsubjpass cells,incubated
R5087 T17945 T17944 auxpass were,incubated
R5088 T17946 T17944 prep on,incubated
R5089 T17947 T17946 pobj ice,on
R5090 T17948 T17944 prep for,incubated
R5091 T17949 T17950 nummod 10,min
R5092 T17950 T17948 pobj min,for
R5093 T17951 T17944 prep in,incubated
R5094 T17952 T17951 pobj buffer,in
R5095 T17953 T17952 nummod 1,buffer
R5096 T17954 T17955 punct (,HCl
R5097 T17955 T17952 parataxis HCl,buffer
R5098 T17956 T17957 nummod 15,mM
R5099 T17957 T17955 compound mM,HCl
R5100 T17958 T17955 compound Tris,HCl
R5101 T17959 T17955 punct -,HCl
R5102 T17960 T17961 punct [,pH
R5103 T17961 T17955 parataxis pH,HCl
R5104 T17962 T17961 nummod 7.5,pH
R5105 T17963 T17961 punct ],pH
R5106 T17964 T17955 punct ", ",HCl
R5107 T17965 T17966 nummod 0.3,M
R5108 T17966 T17967 compound M,sucrose
R5109 T17967 T17955 appos sucrose,HCl
R5110 T17968 T17955 punct ", ",HCl
R5111 T17969 T17970 nummod 60,mM
R5112 T17970 T17971 compound mM,KCl
R5113 T17971 T17955 appos KCl,HCl
R5114 T17972 T17955 punct ", ",HCl
R5115 T17973 T17974 nummod 15,mM
R5116 T17974 T17975 compound mM,NaCl
R5117 T17975 T17955 appos NaCl,HCl
R5118 T17976 T17955 punct ", ",HCl
R5119 T17977 T17978 nummod 5,mM
R5120 T17978 T17979 compound mM,MgCl2
R5121 T17979 T17955 appos MgCl2,HCl
R5122 T17980 T17955 punct ", ",HCl
R5123 T17981 T17982 nummod 0.1,mM
R5124 T17982 T17983 compound mM,EGTA
R5125 T17983 T17955 appos EGTA,HCl
R5126 T17984 T17955 punct ),HCl
R5127 T17985 T17952 prep with,buffer
R5128 T17986 T17987 nummod 0.15,%
R5129 T17987 T17988 compound %,IGEPAL
R5130 T17988 T17985 pobj IGEPAL,with
R5131 T17989 T17990 punct (,Sigma
R5132 T17990 T17988 parataxis Sigma,IGEPAL
R5133 T17991 T17990 punct ", ",Sigma
R5134 T17992 T17993 compound St.,Louis
R5135 T17993 T17990 npadvmod Louis,Sigma
R5136 T17994 T17990 punct ", ",Sigma
R5137 T17995 T17990 npadvmod Missouri,Sigma
R5138 T17996 T17990 punct ", ",Sigma
R5139 T17997 T17998 compound United,States
R5140 T17998 T17990 npadvmod States,Sigma
R5141 T17999 T17990 punct ),Sigma
R5142 T18000 T17944 punct .,incubated
R5143 T18002 T18003 nsubjpass Nuclei,purified
R5144 T18004 T18003 auxpass were,purified
R5145 T18005 T18003 prep by,purified
R5146 T18006 T18005 pobj centrifugation,by
R5147 T18007 T18008 punct (,g
R5148 T18008 T18006 parataxis g,centrifugation
R5149 T18009 T18008 nummod "10,000",g
R5150 T18010 T18009 punct ×,"10,000"
R5151 T18011 T18008 prep for,g
R5152 T18012 T18013 nummod 30,min
R5153 T18013 T18011 pobj min,for
R5154 T18014 T18008 punct ", ",g
R5155 T18015 T18008 prep at,g
R5156 T18016 T18017 nummod 4,°C
R5157 T18017 T18015 pobj °C,at
R5158 T18018 T18008 punct ),g
R5159 T18019 T18003 prep on,purified
R5160 T18020 T18021 compound sucrose,cushions
R5161 T18021 T18019 pobj cushions,on
R5162 T18022 T18023 punct (,buffer
R5163 T18023 T18021 parataxis buffer,cushions
R5164 T18024 T18023 nummod 1,buffer
R5165 T18025 T18023 prep with,buffer
R5166 T18026 T18027 nummod 1.2,M
R5167 T18027 T18028 compound M,sucrose
R5168 T18028 T18025 pobj sucrose,with
R5169 T18029 T18023 punct ),buffer
R5170 T18030 T18003 cc and,purified
R5171 T18031 T18003 conj resuspended,purified
R5172 T18032 T18031 prep in,resuspended
R5173 T18033 T18034 compound nuclease,buffer
R5174 T18034 T18032 pobj buffer,in
R5175 T18035 T18036 punct (,HCl
R5176 T18036 T18034 parataxis HCl,buffer
R5177 T18037 T18038 nummod 50,mM
R5178 T18038 T18036 compound mM,HCl
R5179 T18039 T18036 compound Tris,HCl
R5180 T18040 T18036 punct -,HCl
R5181 T18041 T18042 punct [,pH
R5182 T18042 T18036 parataxis pH,HCl
R5183 T18043 T18042 nummod 7.5,pH
R5184 T18044 T18042 punct ],pH
R5185 T18045 T18036 punct ", ",HCl
R5186 T18046 T18047 nummod 20,mM
R5187 T18047 T18048 compound mM,NaCl
R5188 T18048 T18036 appos NaCl,HCl
R5189 T18049 T18036 punct ", ",HCl
R5190 T18050 T18051 nummod 0.32,M
R5191 T18051 T18052 compound M,sucrose
R5192 T18052 T18036 appos sucrose,HCl
R5193 T18053 T18036 punct ", ",HCl
R5194 T18054 T18055 nummod 4,mM
R5195 T18055 T18056 compound mM,MgCl2
R5196 T18056 T18036 appos MgCl2,HCl
R5197 T18057 T18036 punct ", ",HCl
R5198 T18058 T18059 nummod 1,mM
R5199 T18059 T18060 compound mM,CaCl2
R5200 T18060 T18036 appos CaCl2,HCl
R5201 T18061 T18036 punct ),HCl
R5202 T18062 T18003 punct .,purified
R5203 T18064 T18065 quantmod About,2.106
R5204 T18065 T18066 nummod 2.106,nuclei
R5205 T18066 T18067 nsubjpass nuclei,incubated
R5206 T18068 T18067 auxpass were,incubated
R5207 T18069 T18067 prep with,incubated
R5208 T18070 T18071 amod increasing,quantities
R5209 T18071 T18069 pobj quantities,with
R5210 T18072 T18071 prep of,quantities
R5211 T18073 T18072 pobj MNase,of
R5212 T18074 T18075 punct (,units
R5213 T18075 T18073 parataxis units,MNase
R5214 T18076 T18077 quantmod 0.04,1.6
R5215 T18077 T18075 nummod 1.6,units
R5216 T18078 T18077 punct –,1.6
R5217 T18079 T18075 punct ),units
R5218 T18080 T18073 cc or,MNase
R5219 T18081 T18073 conj DNase,MNase
R5220 T18082 T18081 nummod I,DNase
R5221 T18083 T18084 punct (,units
R5222 T18084 T18081 parataxis units,DNase
R5223 T18085 T18086 quantmod 0.25,16
R5224 T18086 T18084 nummod 16,units
R5225 T18087 T18086 punct –,16
R5226 T18088 T18084 punct ),units
R5227 T18089 T18067 punct .,incubated
R5228 T18091 T18092 compound Digestion,time
R5229 T18092 T18093 nsubj time,was
R5230 T18094 T18092 prep at,time
R5231 T18095 T18096 nummod 37,°C
R5232 T18096 T18094 pobj °C,at
R5233 T18097 T18098 nummod 10,min
R5234 T18098 T18093 attr min,was
R5235 T18099 T18093 prep for,was
R5236 T18100 T18099 pobj MNase,for
R5237 T18101 T18093 cc and,was
R5238 T18102 T18103 nummod 2,min
R5239 T18103 T18093 conj min,was
R5240 T18104 T18103 prep for,min
R5241 T18105 T18104 pobj DNase,for
R5242 T18106 T18105 nummod I,DNase
R5243 T18107 T18093 punct .,was
R5244 T18109 T18110 nsubjpass Digestions,stopped
R5245 T18111 T18110 auxpass were,stopped
R5246 T18112 T18110 prep by,stopped
R5247 T18113 T18112 pcomp adding,by
R5248 T18114 T18113 dobj SDS,adding
R5249 T18115 T18113 prep to,adding
R5250 T18116 T18117 nummod 1,%
R5251 T18117 T18115 pobj %,to
R5252 T18118 T18113 cc and,adding
R5253 T18119 T18113 conj EDTA,adding
R5254 T18120 T18119 prep to,EDTA
R5255 T18121 T18122 nummod 50,mM
R5256 T18122 T18120 pobj mM,to
R5257 T18123 T18110 punct .,stopped
R5258 T18125 T18126 nsubjpass DNAs,prepared
R5259 T18127 T18126 auxpass were,prepared
R5260 T18128 T18126 prep by,prepared
R5261 T18129 T18130 compound proteinase,K
R5262 T18130 T18131 compound K,digestion
R5263 T18131 T18128 pobj digestion,by
R5264 T18132 T18131 acl followed,digestion
R5265 T18133 T18132 agent by,followed
R5266 T18134 T18135 compound phenol,chloroform
R5267 T18135 T18137 compound chloroform,extraction
R5268 T18136 T18135 punct -,chloroform
R5269 T18137 T18133 pobj extraction,by
R5270 T18138 T18137 cc and,extraction
R5271 T18139 T18140 compound isopropanol,precipitation
R5272 T18140 T18137 conj precipitation,extraction
R5273 T18141 T18126 punct .,prepared
R5274 T18143 T18144 aux To,test
R5275 T18144 T18145 advcl test,incubated
R5276 T18146 T18147 det the,association
R5277 T18147 T18144 dobj association,test
R5278 T18148 T18147 prep of,association
R5279 T18149 T18150 compound histone,H3
R5280 T18150 T18148 pobj H3,of
R5281 T18151 T18147 prep with,association
R5282 T18152 T18151 pobj chromatin,with
R5283 T18153 T18144 prep in,test
R5284 T18154 T18155 nmod control,cells
R5285 T18155 T18153 pobj cells,in
R5286 T18156 T18154 cc and,control
R5287 T18157 T18158 npadvmod p150,depleted
R5288 T18158 T18154 conj depleted,control
R5289 T18159 T18158 punct -,depleted
R5290 T18160 T18145 punct ", ",incubated
R5291 T18161 T18162 amod isolated,nuclei
R5292 T18162 T18145 nsubjpass nuclei,incubated
R5293 T18163 T18145 auxpass were,incubated
R5294 T18164 T18145 prep on,incubated
R5295 T18165 T18164 pobj ice,on
R5296 T18166 T18145 prep for,incubated
R5297 T18167 T18168 nummod 30,min
R5298 T18168 T18166 pobj min,for
R5299 T18169 T18145 prep in,incubated
R5300 T18170 T18169 pobj buffer,in
R5301 T18171 T18170 nummod 2,buffer
R5302 T18172 T18173 punct (,Hepes
R5303 T18173 T18170 parataxis Hepes,buffer
R5304 T18174 T18175 nummod 50,mM
R5305 T18175 T18173 compound mM,Hepes
R5306 T18176 T18177 punct [,pH7.9
R5307 T18177 T18173 parataxis pH7.9,Hepes
R5308 T18178 T18177 punct ],pH7.9
R5309 T18179 T18173 punct ", ",Hepes
R5310 T18180 T18181 nummod 20,%
R5311 T18181 T18182 compound %,Glycerol
R5312 T18182 T18173 appos Glycerol,Hepes
R5313 T18183 T18173 punct ", ",Hepes
R5314 T18184 T18185 nummod 3,mM
R5315 T18185 T18186 compound mM,MgCl2
R5316 T18186 T18173 appos MgCl2,Hepes
R5317 T18187 T18173 punct ", ",Hepes
R5318 T18188 T18189 nummod 0.1,%
R5319 T18189 T18190 compound %,IGEPAL
R5320 T18190 T18173 appos IGEPAL,Hepes
R5321 T18191 T18173 punct ", ",Hepes
R5322 T18192 T18193 nummod 0.5,mM
R5323 T18193 T18194 compound mM,DTT
R5324 T18194 T18173 appos DTT,Hepes
R5325 T18195 T18173 punct ", ",Hepes
R5326 T18196 T18197 nummod 0.5,mM
R5327 T18197 T18198 compound mM,PMSF
R5328 T18198 T18173 appos PMSF,Hepes
R5329 T18199 T18173 punct ),Hepes
R5330 T18200 T18170 acl supplemented,buffer
R5331 T18201 T18200 prep with,supplemented
R5332 T18202 T18203 preconj either,M
R5333 T18203 T18205 nmod M,NaCl
R5334 T18204 T18203 nummod 0.1,M
R5335 T18205 T18201 pobj NaCl,with
R5336 T18206 T18203 punct ", ",M
R5337 T18207 T18208 nummod 0.3,M
R5338 T18208 T18203 conj M,M
R5339 T18209 T18208 punct ", ",M
R5340 T18210 T18211 nummod 0.45,M
R5341 T18211 T18208 conj M,M
R5342 T18212 T18211 punct ", ",M
R5343 T18213 T18214 nummod 0.7,M
R5344 T18214 T18211 conj M,M
R5345 T18215 T18214 punct ", ",M
R5346 T18216 T18214 cc or,M
R5347 T18217 T18218 nummod 1,M
R5348 T18218 T18214 conj M,M
R5349 T18219 T18145 punct .,incubated
R5350 T18221 T18222 prep After,analyzed
R5351 T18223 T18221 pobj centrifugation,After
R5352 T18224 T18223 prep at,centrifugation
R5353 T18225 T18226 nummod "15,000",g
R5354 T18226 T18224 pobj g,at
R5355 T18227 T18222 punct ", ",analyzed
R5356 T18228 T18222 nsubjpass pellets,analyzed
R5357 T18229 T18228 cc and,pellets
R5358 T18230 T18228 conj supernants,pellets
R5359 T18231 T18222 auxpass were,analyzed
R5360 T18232 T18222 prep by,analyzed
R5361 T18233 T18234 compound Western,blot
R5362 T18234 T18232 pobj blot,by
R5363 T18235 T18222 advcl using,analyzed
R5364 T18236 T18237 det a,antibody
R5365 T18237 T18235 dobj antibody,using
R5366 T18238 T18239 compound histone,H3
R5367 T18239 T18237 compound H3,antibody
R5368 T18240 T18241 punct (,Abcam
R5369 T18241 T18237 parataxis Abcam,antibody
R5370 T18242 T18241 punct ),Abcam
R5371 T18243 T18222 punct .,analyzed
R5372 T18632 T18631 punct .,ChIP
R5373 T18634 T18635 nsubj We,prepared
R5374 T18636 T18637 amod native,fragments
R5375 T18637 T18635 dobj fragments,prepared
R5376 T18638 T18637 compound chromatin,fragments
R5377 T18639 T18637 prep of,fragments
R5378 T18640 T18641 quantmod two,six
R5379 T18641 T18643 nummod six,nucleosomes
R5380 T18642 T18641 quantmod to,six
R5381 T18643 T18639 pobj nucleosomes,of
R5382 T18644 T18643 prep in,nucleosomes
R5383 T18645 T18644 pobj length,in
R5384 T18646 T18647 mark as,described
R5385 T18647 T18635 advcl described,prepared
R5386 T18648 T18649 punct [,28
R5387 T18649 T18635 parataxis 28,prepared
R5388 T18650 T18649 punct ],28
R5389 T18651 T18635 punct .,prepared
R5390 T18653 T18654 nummod 5,μg
R5391 T18654 T18655 nsubjpass μg,incubated
R5392 T18656 T18654 prep of,μg
R5393 T18657 T18656 pobj chromatin,of
R5394 T18658 T18655 auxpass were,incubated
R5395 T18659 T18655 advmod overnight,incubated
R5396 T18660 T18655 prep with,incubated
R5397 T18661 T18662 nummod 10,μl
R5398 T18662 T18660 pobj μl,with
R5399 T18663 T18662 prep of,μl
R5400 T18664 T18665 amod commercial,antibodies
R5401 T18665 T18663 pobj antibodies,of
R5402 T18666 T18655 punct .,incubated
R5403 T18668 T18669 prep After,purified
R5404 T18670 T18668 pobj incubation,After
R5405 T18671 T18670 prep with,incubation
R5406 T18672 T18673 compound protein,G
R5407 T18673 T18675 compound G,sepharose
R5408 T18674 T18673 punct -,G
R5409 T18675 T18671 pobj sepharose,with
R5410 T18676 T18670 cc and,incubation
R5411 T18677 T18678 nummod three,washes
R5412 T18678 T18670 conj washes,incubation
R5413 T18679 T18669 punct ", ",purified
R5414 T18680 T18681 amod immunoprecipitated,DNA
R5415 T18681 T18669 nsubjpass DNA,purified
R5416 T18682 T18669 auxpass was,purified
R5417 T18683 T18669 punct ", ",purified
R5418 T18684 T18669 conj sized,purified
R5419 T18685 T18684 prep onto,sized
R5420 T18686 T18687 det an,gel
R5421 T18687 T18685 pobj gel,onto
R5422 T18688 T18687 compound agarose,gel
R5423 T18689 T18684 punct ", ",sized
R5424 T18690 T18684 cc and,sized
R5425 T18691 T18684 conj analyzed,sized
R5426 T18692 T18691 prep by,analyzed
R5427 T18693 T18694 compound Southern,blot
R5428 T18694 T18692 pobj blot,by
R5429 T18695 T18669 punct .,purified
R5430 T18697 T18698 compound Hybridization,signals
R5431 T18698 T18699 nsubjpass signals,quantified
R5432 T18700 T18699 auxpass were,quantified
R5433 T18701 T18699 advcl using,quantified
R5434 T18702 T18703 det an,Imager
R5435 T18703 T18701 dobj Imager,using
R5436 T18704 T18703 compound Instant,Imager
R5437 T18705 T18706 punct (,PerkinElmer
R5438 T18706 T18703 parataxis PerkinElmer,Imager
R5439 T18707 T18706 punct ", ",PerkinElmer
R5440 T18708 T18706 npadvmod Wellesley,PerkinElmer
R5441 T18709 T18706 punct ", ",PerkinElmer
R5442 T18710 T18706 npadvmod California,PerkinElmer
R5443 T18711 T18706 punct ", ",PerkinElmer
R5444 T18712 T18713 compound United,States
R5445 T18713 T18706 npadvmod States,PerkinElmer
R5446 T18714 T18706 punct ),PerkinElmer
R5447 T18715 T18699 punct .,quantified
R5448 T18717 T18718 nsubjpass Antibodies,purchased
R5449 T18719 T18717 amod specific,Antibodies
R5450 T18720 T18717 prep for,Antibodies
R5451 T18721 T18720 pobj H4K20me3,for
R5452 T18722 T18718 auxpass were,purchased
R5453 T18723 T18718 prep from,purchased
R5454 T18724 T18723 pobj Abcam,from
R5455 T18725 T18718 punct .,purchased
R5456 T18727 T18728 nsubjpass Antibodies,purchased
R5457 T18729 T18727 prep for,Antibodies
R5458 T18730 T18729 pobj H3K9me3,for
R5459 T18731 T18728 auxpass were,purchased
R5460 T18732 T18728 prep from,purchased
R5461 T18733 T18734 preconj both,Abcam
R5462 T18734 T18732 pobj Abcam,from
R5463 T18735 T18734 cc and,Abcam
R5464 T18736 T18737 compound Upstate,Biotechnology
R5465 T18737 T18734 conj Biotechnology,Abcam
R5466 T18738 T18728 cc and,purchased
R5467 T18739 T18728 conj gave,purchased
R5468 T18740 T18741 amod similar,results
R5469 T18741 T18739 dobj results,gave
R5470 T18742 T18728 punct .,purchased
R5471 T18744 T18745 prep For,used
R5472 T18746 T18747 compound Southern,blot
R5473 T18747 T18748 compound blot,analysis
R5474 T18748 T18744 pobj analysis,For
R5475 T18749 T18745 punct ", ",used
R5476 T18750 T18745 nsubj we,used
R5477 T18751 T18752 det a,fragment
R5478 T18752 T18745 dobj fragment,used
R5479 T18753 T18754 nummod 240,bp
R5480 T18754 T18752 compound bp,fragment
R5481 T18755 T18754 punct -,bp
R5482 T18756 T18757 compound EcoRI,BamHI
R5483 T18757 T18752 compound BamHI,fragment
R5484 T18758 T18757 punct /,BamHI
R5485 T18759 T18752 prep from,fragment
R5486 T18760 T18759 pobj pSAT,from
R5487 T18761 T18762 punct (,probe
R5488 T18762 T18760 parataxis probe,pSAT
R5489 T18763 T18762 amod major,probe
R5490 T18764 T18762 compound satellite,probe
R5491 T18765 T18762 punct ),probe
R5492 T18766 T18767 punct [,45
R5493 T18767 T18752 parataxis 45,fragment
R5494 T18768 T18769 punct –,47
R5495 T18769 T18767 prep 47,45
R5496 T18770 T18767 punct ],45
R5497 T18771 T18752 cc and,fragment
R5498 T18772 T18773 det a,fragment
R5499 T18773 T18752 conj fragment,fragment
R5500 T18774 T18775 nummod 360,bp
R5501 T18775 T18773 compound bp,fragment
R5502 T18776 T18775 punct -,bp
R5503 T18777 T18778 compound EcoRI,HindIII
R5504 T18778 T18773 compound HindIII,fragment
R5505 T18779 T18778 punct /,HindIII
R5506 T18780 T18773 prep from,fragment
R5507 T18781 T18780 pobj R198,from
R5508 T18782 T18773 punct ", ",fragment
R5509 T18783 T18773 acl corresponding,fragment
R5510 T18784 T18783 prep to,corresponding
R5511 T18785 T18786 nummod three,copies
R5512 T18786 T18784 pobj copies,to
R5513 T18787 T18786 prep of,copies
R5514 T18788 T18789 det the,repeat
R5515 T18789 T18787 pobj repeat,of
R5516 T18790 T18791 nummod 120,bp
R5517 T18791 T18789 nmod bp,repeat
R5518 T18792 T18791 punct -,bp
R5519 T18793 T18794 amod minor,satellite
R5520 T18794 T18789 compound satellite,repeat
R5521 T18795 T18796 punct [,49
R5522 T18796 T18783 parataxis 49,corresponding
R5523 T18797 T18796 punct ],49
R5524 T18798 T18745 punct .,used
R5525 T18800 T18801 nsubjpass Probes,described
R5526 T18802 T18800 acl used,Probes
R5527 T18803 T18802 prep in,used
R5528 T18804 T18805 compound FISH,experiments
R5529 T18805 T18803 pobj experiments,in
R5530 T18806 T18801 auxpass were,described
R5531 T18807 T18801 prep in,described
R5532 T18808 T18807 punct [,in
R5533 T18809 T18807 pobj 46,in
R5534 T18810 T18811 punct –,48
R5535 T18811 T18809 prep 48,46
R5536 T18812 T18801 punct ],described
R5537 T18813 T18801 punct .,described
R5538 T18815 T18816 det The,probe
R5539 T18816 T18817 nsubjpass probe,described
R5540 T18818 T18816 prep for,probe
R5541 T18819 T18820 compound IAP,elements
R5542 T18820 T18818 pobj elements,for
R5543 T18821 T18817 auxpass was,described
R5544 T18822 T18817 prep in,described
R5545 T18823 T18822 punct [,in
R5546 T18824 T18822 pobj 50,in
R5547 T18825 T18817 punct ],described
R5548 T18826 T18817 punct .,described
R2936 T10332 T10327 punct ", ",detected
R2938 T10333 T10334 amod residual,epitopes
R2940 T10334 T10327 nsubjpass epitopes,detected
R2941 T10335 T10334 compound H4K20me3,epitopes
R2942 T10336 T10327 auxpass were,detected
R2944 T10337 T10327 prep at,detected
R2945 T10338 T10339 det the,level
R2947 T10339 T10337 pobj level,at
R2948 T10340 T10339 prep of,level
R2949 T10341 T10342 amod relocated,material
R2951 T10342 T10340 pobj material,of
R2952 T10343 T10344 npadvmod DAPI,dense
R2953 T10344 T10342 amod dense,material
R2954 T10345 T10344 punct -,dense
R2956 T10346 T10327 punct .,detected
R2957 T10348 T10349 advmod Altogether,show
R2959 T10350 T10349 punct ", ",show
R2960 T10351 T10352 poss our,results
R2961 T10352 T10349 nsubj results,show
R2962 T10353 T10354 mark that,leads
R2963 T10354 T10349 ccomp leads,show
R2964 T10355 T10354 nsubj depletion,leads
R2966 T10356 T10355 prep of,depletion
R2967 T10357 T10356 pobj CAF,of
R2968 T10358 T10357 punct -,CAF
R2970 T10359 T10357 nummod 1,CAF
R2971 T10360 T10355 prep in,depletion

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T712 0-5 GO:0033186 denotes CAF-1
T713 23-38 GO:0000792 denotes Heterochromatin
T714 55-66 _FRAGMENT denotes Pluripotent
T715 77-82 CL:0002248 denotes Cells
T716 67-76 UBERON:0000922 denotes Embryonic
T717 67-82 CL:0002321 denotes Embryonic Cells
T718 77-82 CL_GO_EXT:cell denotes Cells
T719 136-145 NCBITaxon:40674 denotes mammalian
T720 159-168 GO:0000785 denotes chromatin
T721 182-200 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic marking
T722 193-200 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marking
T723 219-225 SO_EXT:0001026 denotes genome
T724 287-296 GO:0000785 denotes chromatin
T725 287-305 GO:0031497 denotes chromatin assembly
T726 356-374 GO:0031497 denotes chromatin assembly
T727 356-383 GO:0033186 denotes chromatin assembly factor 1
T728 385-390 GO:0033186 denotes CAF-1
T729 403-415 GO:0007566 denotes implantation
T730 444-449 NCBITaxon:10088 denotes mouse
T731 475-483 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T732 491-495 SO_EXT:0000704 denotes gene
T733 496-504 SO_EXT:sequence_coding_function denotes encoding
T734 524-533 PR_EXT:000005402 denotes p150CAF-1
T735 543-552 PR_EXT:000005402 denotes p150CAF-1
T736 567-574 SO_EXT:sequence_altered_entity denotes mutants
T737 615-619 CL_GO_EXT:cell denotes cell
T738 638-647 PR_EXT:000005402 denotes p150CAF-1
T739 657-664 UBERON:0000922 denotes embryos
T740 702-709 GO:0005634 denotes nuclear
T741 739-754 GO:0000792 denotes heterochromatin
T742 784-793 SO_EXT:wild_type_entity_or_quality denotes wild-type
T743 794-801 UBERON:0000922 denotes embryos
T744 803-818 GO:0000792 denotes heterochromatin
T745 867-875 _FRAGMENT denotes two-cell
T746 891-897 UBERON:0007232 denotes stages
T747 871-875 CL_GO_EXT:cell denotes cell
T748 880-890 UBERON:0000358 denotes blastocyst
T749 902-911 PR_EXT:000005402 denotes p150CAF-1
T750 912-918 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T751 922-926 CL_GO_EXT:cell denotes cell
T752 933-940 UBERON:0000922 denotes embryos
T753 970-985 GO:0000792 denotes heterochromatin
T754 1028-1043 GO:0000792 denotes heterochromatin
T755 1047-1051 _FRAGMENT denotes two-
T756 1060-1070 UBERON:0007232 denotes cell stage
T757 1055-1070 UBERON:0007233 denotes four-cell stage
T758 1060-1064 CL_GO_EXT:cell denotes cell
T759 1071-1080 SO_EXT:wild_type_entity_or_quality denotes wild-type
T760 1081-1088 UBERON:0000922 denotes embryos
T761 1106-1111 GO:0033186 denotes CAF-1
T762 1132-1142 GO_PATO_EXT:biological_maturation denotes maturation
T763 1146-1161 GO:0000792 denotes heterochromatin
T764 1172-1184 GO:0007566 denotes implantation
T765 1201-1210 UBERON:0000922 denotes embryonic
T766 1201-1221 CL:0002322 denotes embryonic stem cells
T767 1216-1221 CL_GO_EXT:cell denotes cells
T768 1236-1245 PR_EXT:000005402 denotes p150CAF-1
T769 1252-1255 CHEBI_SO_EXT:RNA denotes RNA
T770 1252-1268 GO:0016246 denotes RNA interference
T771 1287-1299 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T772 1343-1370 GO:0005721 denotes pericentric heterochromatin
T773 1401-1406 GO:0033186 denotes CAF-1
T774 1416-1421 CL_GO_EXT:cell denotes cells
T775 1451-1461 _FRAGMENT denotes epigenetic
T776 1482-1487 SO_EXT:epigenetic_modification_entity denotes marks
T777 1462-1469 PR_EXT:000043452 denotes histone
T778 1462-1469 CHEBI:15358 denotes histone
T779 1462-1481 GO:0016571 denotes histone methylation
T780 1470-1481 GO_MOP_EXT:methylation denotes methylation
T781 1482-1487 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marks
T782 1504-1531 GO:0005721 denotes pericentric heterochromatin
T783 1539-1550 SO_EXT:sequence_alteration_entity_or_process denotes alterations
T784 1554-1569 GO:0000792 denotes heterochromatin
T785 1587-1596 PR_EXT:000005402 denotes p150CAF-1
T786 1606-1611 NCBITaxon:10088 denotes mouse
T787 1612-1621 UBERON:0000922 denotes embryonic
T788 1622-1633 CL:0000057 denotes fibroblasts
T789 1645-1650 CL_GO_EXT:cell denotes cells
T790 1703-1708 GO:0033186 denotes CAF-1
T791 1738-1753 GO:0000792 denotes heterochromatin
T792 1770-1781 _FRAGMENT denotes pluripotent
T793 1792-1797 CL:0002248 denotes cells
T794 1782-1791 UBERON:0000922 denotes embryonic
T795 1782-1797 CL:0002321 denotes embryonic cells
T796 1792-1797 CL_GO_EXT:cell denotes cells
T797 1838-1847 GO:0000785 denotes chromatin
T798 1838-1856 GO:0031497 denotes chromatin assembly
T799 1870-1881 GO:0065007 denotes controlling
T800 1911-1929 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic marking
T801 1922-1929 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marking
T802 1937-1943 SO_EXT:0001026 denotes genome
T803 1947-1960 UBERON:0019248 denotes early embryos
T804 1965-1974 UBERON:0000922 denotes embryonic
T805 1965-1985 CL:0002322 denotes embryonic stem cells
T806 1980-1985 CL_GO_EXT:cell denotes cells
T2162 3244-3249 NCBITaxon:10088 denotes mouse
T2163 3254-3266 GO:0007566 denotes implantation
T2164 3284-3290 SO_EXT:0001026 denotes genome
T2165 3319-3337 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic changes
T2166 3351-3360 UBERON:0000922 denotes embryonic
T2167 3361-3365 SO_EXT:0000704 denotes gene
T2168 3361-3376 GO:0010467 denotes gene expression
T2169 3424-3439 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T2170 3508-3511 CHEBI_SO_EXT:DNA denotes DNA
T2171 3508-3523 GO:0006306 denotes DNA methylation
T2172 3512-3523 GO_MOP_EXT:methylation denotes methylation
T2173 3527-3537 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic
T2174 3592-3601 GO:0000785 denotes chromatin
T2175 3667-3674 PR_EXT:000043452 denotes histone
T2176 3667-3674 CHEBI:15358 denotes histone
T2177 3667-3684 GO:0016570 denotes histone modifying
T2178 3675-3684 SO_EXT:sequence_alteration_process denotes modifying
T2179 3685-3692 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T2180 3694-3703 GO:0000785 denotes chromatin
T2181 3694-3714 GO:0006338 denotes chromatin remodeling
T2182 3728-3735 PR_EXT:000043452 denotes histone
T2183 3728-3735 CHEBI:15358 denotes histone
T2184 3758-3770 GO:0007566 denotes implantation
T2185 3790-3800 CL:0000034 denotes stem cells
T2186 3795-3800 CL_GO_EXT:cell denotes cells
T2187 3814-3827 UBERON:0019248 denotes early embryos
T2188 3856-3863 PR_EXT:000043452 denotes histone
T2189 3856-3863 CHEBI:15358 denotes histone
T2190 3879-3888 GO:0000785 denotes chromatin
T2191 3879-3899 GO:0006338 denotes chromatin remodeling
T2192 3900-3909 GO:0032991 denotes complexes
T2193 3937-3947 GO:0000786 denotes nucleosome
T2194 3937-3956 GO:0006334 denotes nucleosome assembly
T2195 4011-4018 GO:0065007 denotes control
T2196 4019-4028 GO:0000785 denotes chromatin
T2197 4019-4037 GO:0031497 denotes chromatin assembly
T2198 4042-4052 GO_PATO_EXT:biological_maturation denotes maturation
T2199 4085-4092 PR_EXT:000043452 denotes histone
T2200 4085-4092 CHEBI:15358 denotes histone
T2201 4105-4123 GO:0031497 denotes chromatin assembly
T2202 4105-4132 GO:0033186 denotes chromatin assembly factor 1
T2203 4134-4139 GO:0033186 denotes CAF-1
T2204 4161-4165 PR_EXT:000005402 denotes p150
T2205 4167-4170 PR_EXT:000005403 denotes p60
T2206 4176-4179 PR_EXT:000013776 denotes p48
T2207 4181-4188 GO:0032991 denotes complex
T2208 4204-4211 CHEBI:15358 denotes histone
T2209 4204-4214 PR_EXT:000027594 denotes histone H3
T2210 4204-4211 _FRAGMENT denotes histone
T2211 4219-4221 PR_EXT:000008603 denotes H4
T2212 4256-4259 CHEBI_SO_EXT:DNA denotes DNA
T2213 4267-4278 GO:0006260 denotes replication
T2214 4282-4285 CHEBI_SO_EXT:DNA denotes DNA
T2215 4282-4292 GO:0006281 denotes DNA repair
T2216 4315-4320 GO:0033186 denotes CAF-1
T2217 4334-4341 CHEBI:15358 denotes histone
T2218 4334-4344 PR_EXT:000027594 denotes histone H3
T2219 4345-4352 SO_EXT:sequence_variant_or_variation denotes variant
T2220 4363-4372 GO:0000785 denotes chromatin
T2221 4398-4401 CHEBI_SO_EXT:DNA denotes DNA
T2222 4398-4411 GO:0071897 denotes DNA synthesis
T2223 4430-4437 PR_EXT:000043452 denotes histone
T2224 4430-4437 CHEBI:15358 denotes histone
T2225 4449-4453 PR_EXT:000008570 denotes HIRA
T2226 4492-4496 PR_EXT:000008425 denotes H3.3
T2227 4497-4504 SO_EXT:sequence_variant_entity denotes variant
T2228 4510-4513 CHEBI_SO_EXT:DNA denotes DNA
T2229 4510-4523 GO:0071897 denotes DNA synthesis
T2230 4582-4591 GO:0000785 denotes chromatin
T2231 4582-4600 GO:0031497 denotes chromatin assembly
T2232 4611-4616 GO:0033186 denotes CAF-1
T2233 4640-4648 CHEBI_PR_EXT:protein denotes proteins
T2234 4660-4675 GO:0000792 denotes heterochromatin
T2235 4687-4702 GO:0000792 denotes heterochromatin
T2236 4687-4712 PR_EXT:P05205 denotes heterochromatin protein 1
T2237 4703-4710 CHEBI_PR_EXT:protein denotes protein
T2238 4714-4717 PR_EXT:P05205 denotes HP1
T2239 4723-4727 PR_EXT:000010214 denotes MBD1
T2240 4742-4749 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T2241 4750-4756 SO_EXT:0000417 denotes domain
T2242 4757-4764 CHEBI_PR_EXT:protein denotes protein
T2243 4770-4778 GO_EXT:biological_recruitment denotes recruits
T2244 4779-4786 PR_EXT:000043452 denotes histone
T2245 4779-4786 CHEBI:15358 denotes histone
T2246 4779-4798 GO_EXT:0004407 denotes histone deacetylase
T2247 4814-4821 PR_EXT:000043452 denotes histone
T2248 4814-4821 CHEBI:15358 denotes histone
T2249 4814-4839 GO_EXT:0042054 denotes histone methyltransferase
T2250 4873-4882 PR_EXT:000005402 denotes p150CAF-1
T2251 4907-4918 GO:0006260 denotes replication
T2252 4936-4939 PR_EXT:P05205 denotes HP1
T2253 4940-4949 CHEBI:36357 denotes molecules
T2254 4953-4964 GO:0006260 denotes replication
T2255 4953-4970 SO_EXT:0000296 denotes replication sites
T2256 4974-5001 GO:0005721 denotes pericentric heterochromatin
T2257 5018-5025 GO:0051320 denotes S phase
T2258 5077-5082 GO:0033186 denotes CAF-1
T2259 5090-5118 GO:0031507 denotes formation of heterochromatin
T2260 5103-5118 GO:0000792 denotes heterochromatin
T2261 5146-5156 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic
T2262 5192-5214 SO_EXT:biological_conservation_process_or_quality denotes evolutionary conserved
T2263 5215-5222 PR_EXT:000043452 denotes histone
T2264 5215-5222 CHEBI:15358 denotes histone
T2265 5262-5275 CHEBI_EXT:biochemical denotes biochemically
T2266 5357-5364 NCBITaxon:40674 denotes mammals
T2267 5372-5389 CL:0002248 denotes pluripotent cells
T2268 5384-5389 CL_GO_EXT:cell denotes cells
T2269 5398-5407 UBERON:0000922 denotes embryonic
T2270 5398-5412 _FRAGMENT denotes embryonic stem
T2271 5418-5423 CL:0002322 denotes cells
T2272 5414-5416 _FRAGMENT denotes ES
T2273 5418-5423 CL_GO_EXT:cell denotes cells
T2274 5466-5471 GO:0033186 denotes CAF-1
T2275 5485-5490 NCBITaxon:10088 denotes mouse
T2276 5506-5513 SO_EXT:0000704 denotes genetic
T2277 5530-5538 CL:0002322 denotes ES cells
T2278 5533-5538 CL_GO_EXT:cell denotes cells
T2279 5558-5561 CHEBI_SO_EXT:RNA denotes RNA
T2280 5558-5574 GO:0016246 denotes RNA interference
T2281 5576-5580 GO:0016246 denotes RNAi
T2282 5596-5601 GO:0033186 denotes CAF-1
T2283 5632-5637 _FRAGMENT denotes early
T2284 5644-5651 UBERON:0019248 denotes embryos
T2285 5638-5643 NCBITaxon:10088 denotes mouse
T2286 5656-5664 CL:0002322 denotes ES cells
T2287 5659-5664 CL_GO_EXT:cell denotes cells
T2288 5691-5696 GO:0033186 denotes CAF-1
T2289 5742-5760 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic marking
T2290 5753-5760 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marking
T2291 5764-5779 GO:0000792 denotes heterochromatin
T2292 5791-5802 _FRAGMENT denotes pluripotent
T2293 5813-5818 CL:0002248 denotes cells
T2294 5803-5812 UBERON:0000922 denotes embryonic
T2295 5803-5818 CL:0002321 denotes embryonic cells
T2296 5813-5818 CL_GO_EXT:cell denotes cells
T7538 5837-5841 SO_EXT:0000704 denotes gene
T7539 5855-5863 CL:0002322 denotes ES cells
T7540 5858-5863 CL_GO_EXT:cell denotes cells
T7541 5867-5873 SO_EXT:sequence_deletion_process denotes delete
T7542 5874-5878 SO_EXT:0000147 denotes exon
T7543 5888-5894 PR_EXT:000005402 denotes Chaf1a
T7544 5895-5899 SO_EXT:0000704 denotes gene
T7545 5907-5914 SO_EXT:sequence_coding_function denotes encodes
T7546 5915-5924 PR_EXT:000005402 denotes p150CAF-1
T7547 5938-5944 PR_EXT:000005402 denotes Chaf1a
T7548 5945-5946 SO_EXT:normal_or_wild_type_or_present denotes +
T7549 5947-5948 SO_EXT:sequence_nullness_or_absence denotes
T7550 5949-5953 NCBITaxon:10088 denotes mice
T7551 5959-5963 GO:0007567 denotes born
T7552 6098-6102 NCBITaxon:10088 denotes mice
T7553 6129-6136 PATO_UBERON_EXT:neonate_or_newborn denotes newborn
T7554 6137-6143 PR_EXT:000005402 denotes Chaf1a
T7555 6144-6145 SO_EXT:sequence_nullness_or_absence denotes
T7556 6146-6147 SO_EXT:sequence_nullness_or_absence denotes
T7557 6148-6152 NCBITaxon:10088 denotes mice
T7558 6181-6187 PR_EXT:000005402 denotes Chaf1a
T7559 6188-6189 SO_EXT:sequence_nullness_or_absence denotes
T7560 6190-6191 SO_EXT:sequence_nullness_or_absence denotes
T7561 6192-6199 UBERON:0000922 denotes embryos
T7562 6233-6245 GO:0007566 denotes implantation
T7563 6279-6285 PR_EXT:000005402 denotes Chaf1a
T7564 6286-6287 SO_EXT:sequence_nullness_or_absence denotes
T7565 6288-6289 SO_EXT:sequence_nullness_or_absence denotes
T7566 6290-6297 UBERON:0000922 denotes embryos
T7567 6301-6310 UBERON:0000922 denotes embryonic
T7568 6386-6393 UBERON:0000922 denotes embryos
T7569 6408-6414 PR_EXT:000005402 denotes Chaf1a
T7570 6415-6416 SO_EXT:normal_or_wild_type_or_present denotes +
T7571 6417-6418 SO_EXT:sequence_nullness_or_absence denotes
T7572 6419-6423 NCBITaxon:10088 denotes mice
T7573 6487-6493 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T7574 6494-6501 UBERON:0000922 denotes embryos
T7575 6547-6553 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T7576 6554-6561 UBERON:0000922 denotes embryos
T7577 6589-6594 CL_GO_EXT:cell denotes cells
T7578 6626-6631 CL_GO_EXT:cell denotes cells
T7579 6645-6654 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7580 6671-6682 UBERON:0000358 denotes blastocysts
T7581 6792-6801 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7582 6806-6815 PR_EXT:000005402 denotes p150CAF-1
T7583 6825-6832 UBERON:0000922 denotes embryos
T7584 6844-6853 PR_EXT:000005402 denotes p150CAF-1
T7585 6896-6912 UBERON:0007236 denotes eight-cell stage
T7586 6902-6906 CL_GO_EXT:cell denotes cell
T7587 6971-6978 CHEBI_PR_EXT:protein denotes protein
T7588 6997-7003 UBERON:0000922 denotes embryo
T7589 7014-7029 UBERON:0007233 denotes four-cell stage
T7590 7019-7023 CL_GO_EXT:cell denotes cell
T7591 7050-7059 PR_EXT:000005402 denotes p150CAF-1
T7592 7060-7067 CHEBI_PR_EXT:protein denotes protein
T7593 7119-7123 CL_GO_EXT:cell denotes cell
T7594 7119-7133 GO:0051301 denotes cell divisions
T7595 9755-9762 GO:0005634 denotes nuclear
T7596 9779-9794 GO:0000792 denotes heterochromatin
T7597 9820-9826 GO:0005634 denotes nuclei
T7598 9830-9836 PR_EXT:000005402 denotes Chaf1a
T7599 9837-9838 SO_EXT:sequence_nullness_or_absence denotes
T7600 9839-9840 SO_EXT:sequence_nullness_or_absence denotes
T7601 9841-9848 UBERON:0000922 denotes embryos
T7602 9850-9877 GO:0005721 denotes Pericentric heterochromatin
T7603 9915-9930 GO:0000792 denotes heterochromatin
T7604 9960-9970 GO:0051325 denotes interphase
T7605 9971-9977 GO:0005634 denotes nuclei
T7606 9985-9997 CHEBI_EXT:51217 denotes fluorochrome
T7607 9998-10002 CHEBI:51231 denotes DAPI
T7608 10030-10034 PR_EXT:000005086 denotes HP1α
T7609 10050-10059 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7610 10060-10071 UBERON:0000358 denotes blastocysts
T7611 10079-10084 NCBITaxon:10088 denotes mouse
T7613 10093-10098 CL_GO_EXT:cell denotes cells
T7614 10100-10127 GO:0005721 denotes pericentric heterochromatin
T7615 10175-10184 GO:0000785 denotes chromatin
T7616 10203-10216 GO:0010369 denotes chromocenters
T7617 10247-10251 CHEBI:51231 denotes DAPI
T7618 10314-10320 PR_EXT:000005402 denotes Chaf1a
T7619 10321-10322 SO_EXT:sequence_nullness_or_absence denotes
T7620 10323-10324 SO_EXT:sequence_nullness_or_absence denotes
T7621 10325-10332 UBERON:0000922 denotes embryos
T7622 10352-10361 GO:0000785 denotes chromatin
T7623 10421-10427 SO_EXT:0001026 denotes genome
T7624 10545-10560 GO:0000792 denotes heterochromatin
T7625 10586-10594 _FRAGMENT denotes two-cell
T7626 10610-10616 UBERON:0007232 denotes stages
T7627 10590-10594 CL_GO_EXT:cell denotes cell
T7628 10599-10609 UBERON:0000358 denotes blastocyst
T7629 10621-10635 UBERON:0007232 denotes two-cell stage
T7630 10625-10629 CL_GO_EXT:cell denotes cell
T7631 10636-10645 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7632 10646-10653 UBERON:0000922 denotes embryos
T7633 10655-10659 CHEBI:51231 denotes DAPI
T7634 10737-10763 GO:0005731 denotes nucleolar precursor bodies
T7635 10777-10792 GO:0000792 denotes Heterochromatin
T7636 10834-10838 CHEBI:51231 denotes DAPI
T7637 10862-10871 _FRAGMENT denotes four-cell
T7638 10895-10901 UBERON:0007233 denotes stages
T7639 10867-10871 CL_GO_EXT:cell denotes cell
T7640 10879-10883 CL_GO_EXT:cell denotes cell
T7641 10884-10894 UBERON:0000358 denotes blastocyst
T7642 10931-10935 PR_EXT:000005086 denotes HP1α
T7643 10980-10984 CHEBI:51231 denotes DAPI
T7644 11021-11036 GO:0000792 denotes heterochromatin
T7645 11060-11067 GO:0005634 denotes nuclear
T7646 11084-11099 GO:0000792 denotes heterochromatin
T7647 11136-11148 GO:0007566 denotes implantation
T7648 11174-11182 _FRAGMENT denotes two-cell
T7649 11198-11204 UBERON:0007232 denotes stages
T7650 11178-11182 CL_GO_EXT:cell denotes cell
T7651 11187-11197 UBERON:0000358 denotes blastocyst
T7652 11209-11215 PR_EXT:000005402 denotes Chaf1a
T7653 11216-11217 SO_EXT:sequence_nullness_or_absence denotes
T7654 11218-11219 SO_EXT:sequence_nullness_or_absence denotes
T7655 11223-11230 UBERON:0000922 denotes embryos
T7656 11263-11269 _FRAGMENT denotes eight-
T7657 11277-11287 UBERON:0007236 denotes cell stage
T7658 11277-11281 CL_GO_EXT:cell denotes cell
T7659 11289-11293 CHEBI:51231 denotes DAPI
T7660 11350-11354 CHEBI:51231 denotes DAPI
T7661 11387-11394 GO:0005634 denotes nucleus
T7662 11438-11446 GO:0005730 denotes nucleoli
T7663 11458-11470 _FRAGMENT denotes periphery of
T7664 11475-11481 GO:0034399 denotes nuclei
T7665 11495-11507 GO_PATO_EXT:biological_localization_process_or_quality denotes Localization
T7666 11511-11515 PR_EXT:000005086 denotes HP1α
T7667 11556-11560 CHEBI:51231 denotes DAPI
T7668 11590-11607 GO:0034399 denotes nuclear periphery
T7669 11624-11632 GO:0005730 denotes nucleoli
T7670 11676-11691 GO:0000792 denotes heterochromatin
T7671 11695-11701 PR_EXT:000005402 denotes Chaf1a
T7672 11702-11703 SO_EXT:sequence_nullness_or_absence denotes
T7673 11704-11705 SO_EXT:sequence_nullness_or_absence denotes
T7674 11706-11713 UBERON:0000922 denotes embryos
T7675 11736-11751 GO:0000792 denotes heterochromatin
T7676 11774-11778 _FRAGMENT denotes two-
T7677 11787-11797 UBERON:0007232 denotes cell stage
T7678 11782-11797 UBERON:0007233 denotes four-cell stage
T7679 11787-11791 CL_GO_EXT:cell denotes cell
T7680 11798-11807 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7681 11808-11815 UBERON:0000922 denotes embryos
T7682 11879-11888 PR_EXT:000005402 denotes p150CAF-1
T7683 11900-11912 GO:0007566 denotes implantation
T7684 11947-11954 CHEBI_PR_EXT:protein denotes protein
T7685 12002-12024 _FRAGMENT denotes heterochromatin within
T7686 12040-12046 GO:0005720 denotes nuclei
T7687 12025-12034 UBERON:0000922 denotes embryonic
T7688 12025-12039 CL:0002321 denotes embryonic cell
T7689 12035-12046 GO:0005634 denotes cell nuclei
T7690 12100-12105 GO:0033186 denotes CAF-1
T7691 12132-12140 CL:0002322 denotes ES cells
T7692 12135-12140 CL_GO_EXT:cell denotes cells
T7693 12169-12179 UBERON:0000358 denotes blastocyst
T7694 12180-12195 UBERON:0000087 denotes inner cell mass
T7695 12186-12190 CL_GO_EXT:cell denotes cell
T7696 12246-12252 PR_EXT:000005402 denotes Chaf1a
T7697 12253-12254 SO_EXT:sequence_nullness_or_absence denotes
T7698 12255-12256 SO_EXT:sequence_nullness_or_absence denotes
T7699 12257-12264 UBERON:0000922 denotes embryos
T7700 12271-12276 CL_GO_EXT:cell denotes cells
T7701 12312-12316 SO_EXT:sequence_nullness denotes null
T7702 12317-12324 UBERON:0000922 denotes embryos
T7703 12346-12350 GO:0016246 denotes RNAi
T7704 12373-12382 PR_EXT:000005402 denotes p150CAF-1
T7705 12396-12404 CL:0002322 denotes ES cells
T7706 12399-12404 CL_GO_EXT:cell denotes cells
T7707 12466-12475 PR_EXT:000005402 denotes p150CAF-1
T7708 12476-12480 GO:0016246 denotes RNAi
T7709 12490-12498 CL:0002322 denotes ES cells
T7710 12493-12498 CL_GO_EXT:cell denotes cells
T7711 12541-12546 CL_GO_EXT:cell denotes cells
T7712 12550-12556 PR_EXT:000005402 denotes Chaf1a
T7713 12557-12558 SO_EXT:sequence_nullness_or_absence denotes
T7714 12559-12560 SO_EXT:sequence_nullness_or_absence denotes
T7715 12564-12568 NCBITaxon:10088 denotes mice
T7716 12570-12574 CHEBI:51231 denotes DAPI
T7717 12621-12625 PR_EXT:000005086 denotes HP1α
T7718 12630-12634 CHEBI:51231 denotes DAPI
T7719 12655-12663 GO:0005730 denotes nucleoli
T7720 12675-12687 _FRAGMENT denotes periphery of
T7721 12692-12699 GO:0034399 denotes nucleus
T7722 12740-12749 PR_EXT:000005402 denotes p150CAF-1
T7723 12767-12774 GO:0005634 denotes nuclear
T7724 12791-12806 GO:0000792 denotes heterochromatin
T7725 12810-12818 CL:0002322 denotes ES cells
T7726 12813-12818 CL_GO_EXT:cell denotes cells
T7727 12849-12861 GO:0007566 denotes implantation
T7728 12862-12869 UBERON:0000922 denotes embryos
T7729 12930-12945 GO:0000792 denotes heterochromatin
T7730 12970-12975 NCBITaxon:10088 denotes mouse
T7731 12976-12985 UBERON:0000922 denotes embryonic
T7732 12986-12997 CL:0000057 denotes fibroblasts
T7733 13015-13024 PR_EXT:000005402 denotes p150CAF-1
T7734 13038-13042 GO:0016246 denotes RNAi
T7735 13044-13053 PR_EXT:000005402 denotes p150CAF-1
T7736 13107-13111 CL_GO_EXT:cell denotes cell
T7737 13107-13125 GO:0008283 denotes cell proliferation
T7738 13182-13197 GO:0000792 denotes heterochromatin
T7739 13238-13247 PR_EXT:000005402 denotes p150CAF-1
T7740 13265-13270 CL_GO_EXT:cell denotes cells
T7741 13286-13301 GO:0000792 denotes heterochromatin
T7742 13371-13376 GO:0033186 denotes CAF-1
T7743 13384-13396 UBERON:0019248 denotes early embryo
T7744 13401-13409 CL:0002322 denotes ES cells
T7745 13404-13409 CL_GO_EXT:cell denotes cells
T7746 14716-14725 PR_EXT:000005402 denotes p150CAF-1
T7747 14729-14737 CL:0002322 denotes ES cells
T7748 14732-14737 CL_GO_EXT:cell denotes cells
T7749 14763-14778 GO:0000792 denotes heterochromatin
T7750 14779-14786 GO:0005634 denotes nuclear
T7751 14855-14862 GO:0005634 denotes nuclear
T7752 14913-14921 GO:0042571 denotes antibody
T7753 14934-14947 CL:0000836 denotes promyelocytic
T7754 14934-14956 PR_EXT:000026474 denotes promyelocytic leukemia
T7755 14958-14961 PR_EXT:000026474 denotes PML
T7756 14963-14970 CHEBI_PR_EXT:protein denotes protein
T7757 14996-14999 PR_EXT:000026474 denotes PML
T7758 14996-15014 GO:0016605 denotes PML nuclear bodies
T7759 15048-15055 GO:0005634 denotes nuclear
T7760 15154-15157 PR_EXT:000026474 denotes PML
T7761 15154-15172 GO:0016605 denotes PML nuclear bodies
T7762 15193-15202 PR_EXT:000005402 denotes p150CAF-1
T7763 15212-15220 CL:0002322 denotes ES cells
T7764 15215-15220 CL_GO_EXT:cell denotes cells
T7765 15255-15262 GO:0005634 denotes nuclear
T7766 15310-15315 GO:0033186 denotes CAF-1
T7767 15383-15388 GO:0033186 denotes CAF-1
T7768 15435-15444 GO:0000785 denotes chromatin
T7769 15459-15467 CHEBI_PR_EXT:protein denotes proteins
T7770 15476-15483 CHEBI:15358 denotes histone
T7771 15476-15486 PR_EXT:000027594 denotes histone H3
T7772 15491-15495 PR_EXT:000005086 denotes HP1α
T7773 15515-15520 GO:0033186 denotes CAF-1
T7774 15549-15562 UBERON:0019248 denotes early embryos
T7775 15570-15578 CL:0002322 denotes ES cells
T7776 15573-15578 CL_GO_EXT:cell denotes cells
T7777 15614-15629 GO:0000792 denotes heterochromatin
T7778 15633-15640 GO:0005634 denotes nuclear
T7779 15684-15693 NCBITaxon:40674 denotes mammalian
T7780 15694-15698 CL_GO_EXT:cell denotes cell
T7781 15717-15722 GO:0033186 denotes CAF-1
T7782 15748-15755 GO:0051320 denotes S phase
T7783 15808-15820 GO:0009294 denotes transfection
T7784 15828-15832 GO:0016246 denotes RNAi
T7785 15833-15839 SO_EXT:0000440 denotes vector
T7786 15841-15850 PR_EXT:000005402 denotes p150CAF-1
T7787 15860-15865 CL_GO_EXT:cell denotes cells
T7788 15903-15908 GO:0033186 denotes CAF-1
T7789 15944-15955 GO:0006260 denotes replication
T7790 15993-16002 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymidine
T7791 16010-16027 CHEBI:472552 denotes bromodeoxyuridine
T7792 16029-16033 CHEBI:472552 denotes BrdU
T7793 16052-16056 PR_EXT:000012421 denotes PCNA
T7794 16058-16071 GO:0008283 denotes proliferating
T7795 16058-16092 PR_EXT:000012421 denotes proliferating cell nuclear antigen
T7796 16072-16076 CL_GO_EXT:cell denotes cell
T7797 16085-16092 CHEBI_EXT:59132 denotes antigen
T7798 16172-16177 CL_GO_EXT:cell denotes cells
T7799 16179-16182 CHEBI_SO_EXT:DNA denotes DNA
T7800 16179-16194 GO:0006260 denotes DNA replication
T7801 16235-16250 GO:0000792 denotes heterochromatin
T7802 16286-16294 CL:0002322 denotes ES cells
T7803 16289-16294 CL_GO_EXT:cell denotes cells
T7804 16304-16315 GO:0008283 denotes proliferate
T7805 16320-16323 GO:0016265 denotes die
T7806 16340-16349 PR_EXT:000005402 denotes p150CAF-1
T7807 16379-16387 CL_GO_EXT:cell denotes cellular
T7808 16379-16395 GO:0009987 denotes cellular process
T7809 16403-16410 UBERON:0000922 denotes embryos
T7810 16458-16467 PR_EXT:000005402 denotes p150CAF-1
T7811 16480-16488 CL:0002322 denotes ES cells
T7812 16483-16488 CL_GO_EXT:cell denotes cells
T7813 16493-16506 UBERON:0019248 denotes early embryos
T7814 16540-16558 _FRAGMENT denotes heterochromatin in
T7815 16563-16570 GO:0005720 denotes nucleus
T7816 16598-16602 CL_GO_EXT:cell denotes cell
T7817 16598-16608 GO:0007049 denotes cell cycle
T7818 17892-17907 GO:0000792 denotes heterochromatin
T7819 17945-17948 CHEBI_SO_EXT:DNA denotes DNA
T7820 17970-17983 GO:0097617 denotes hybridization
T7821 18057-18084 GO_SO_EXT:centromere_or_centromeric_region_or_centromeric_orientation denotes centric chromosomal regions
T7822 18095-18100 NCBITaxon:10088 denotes mouse
T7823 18156-18173 SO_EXT:satellite_unit_or_region denotes satellite repeats
T7824 18206-18218 _FRAGMENT denotes domains from
T7825 18229-18240 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomes
T7826 18317-18321 CHEBI:51231 denotes DAPI
T7827 18340-18350 GO:0051325 denotes interphase
T7828 18351-18358 GO:0005634 denotes nucleus
T7829 18474-18483 PR_EXT:000005402 denotes p150CAF-1
T7830 18484-18488 GO:0016246 denotes RNAi
T7831 18498-18503 CL_GO_EXT:cell denotes cells
T7832 18533-18560 GO:0005721 denotes pericentric heterochromatin
T7833 18611-18615 CHEBI:51231 denotes DAPI
T7834 18663-18675 _FRAGMENT denotes domains from
T7835 18683-18694 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomes
T7836 18809-18814 CL_GO_EXT:cell denotes cells
T7837 18874-18891 GO:0034399 denotes nuclear periphery
T7838 18914-18918 CHEBI:51231 denotes DAPI
T7839 18954-18963 PR_EXT:000005402 denotes p150CAF-1
T7840 19052-19059 GO:0005634 denotes nucleus
T7841 19128-19132 CHEBI:51231 denotes DAPI
T7842 19143-19152 SO_EXT:satellite_unit_or_region denotes satellite
T7843 19153-19166 GO:0097617 denotes hybridization
T7844 19178-19187 PR_EXT:000005402 denotes p150CAF-1
T7845 19197-19202 CL_GO_EXT:cell denotes cells
T7846 19252-19279 GO:0005721 denotes pericentric heterochromatin
T7847 19367-19372 CL_GO_EXT:cell denotes cells
T7848 19416-19425 PR_EXT:000005402 denotes p150CAF-1
T7849 19495-19504 PR_EXT:000005402 denotes p150CAF-1
T7850 19563-19590 GO:0005721 denotes pericentric heterochromatin
T7851 21346-21351 GO:0033186 denotes CAF-1
T7852 21373-21380 CHEBI:15358 denotes histone
T7853 21373-21380 _FRAGMENT denotes histone
T7854 21390-21392 PR_EXT:000008603 denotes H4
T7855 21409-21412 CHEBI_SO_EXT:DNA denotes DNA
T7856 21409-21422 GO:0071897 denotes DNA synthesis
T7857 21480-21489 GO:0000785 denotes chromatin
T7858 21529-21540 GO:0000786 denotes nucleosomal
T7859 21561-21568 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T7860 21585-21593 GO_EXT:0004518 denotes nuclease
T7861 21678-21687 PR_EXT:000005402 denotes p150CAF-1
T7862 21697-21705 CL:0002322 denotes ES cells
T7863 21700-21705 CL_GO_EXT:cell denotes cells
T7864 21727-21733 SO_EXT:0001026 denotes genome
T7865 21734-21743 GO:0000785 denotes chromatin
T7866 21762-21769 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7867 21848-21855 CHEBI:15358 denotes histone
T7868 21848-21858 PR_EXT:000027594 denotes histone H3
T7869 21864-21883 GO:0000790 denotes chromatin in nuclei
T7870 21898-21903 CL_GO_EXT:cell denotes cells
T7871 21904-21915 GO:0009294 denotes transfected
T7872 21933-21942 PR_EXT:000005402 denotes p150CAF-1
T7873 21943-21947 GO:0016246 denotes RNAi
T7874 21948-21963 SO_EXT:0000755 denotes plasmid vectors
T7875 21965-21971 GO:0005634 denotes Nuclei
T7876 21990-21997 CHEBI_CHMO_EXT:buffer_solution denotes buffers
T7877 22013-22017 CHEBI:24866 denotes salt
T7878 22053-22057 CHEBI:26710 denotes NaCl
T7879 22065-22069 CHEBI:26710 denotes NaCl
T7880 22104-22111 CHEBI:15358 denotes histone
T7881 22104-22114 PR_EXT:000027594 denotes histone H3
T7882 22141-22150 GO:0000785 denotes chromatin
T7883 22188-22197 PR_EXT:000005402 denotes p150CAF-1
T7884 22207-22215 CL:0002322 denotes ES cells
T7885 22210-22215 CL_GO_EXT:cell denotes cells
T7886 22292-22319 GO:0005721 denotes pericentric heterochromatin
T7887 22376-22387 GO:0000786 denotes nucleosomal
T7888 22970-22977 GO:0005634 denotes nuclear
T7889 22978-22990 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T7890 22994-22998 PR_EXT:000005086 denotes HP1α
T7891 23022-23028 PR_EXT:000005402 denotes Chaf1a
T7892 23029-23030 SO_EXT:sequence_nullness_or_absence denotes
T7893 23031-23032 SO_EXT:sequence_nullness_or_absence denotes
T7894 23033-23040 UBERON:0000922 denotes embryos
T7895 23045-23054 PR_EXT:000005402 denotes p150CAF-1
T7896 23064-23072 CL:0002322 denotes ES cells
T7897 23067-23072 CL_GO_EXT:cell denotes cells
T7898 23116-23132 SO_EXT:epigenetic_modification_entity denotes epigenetic marks
T7899 23127-23132 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marks
T7900 23166-23193 GO:0005721 denotes pericentric heterochromatin
T7901 23211-23214 CHEBI_SO_EXT:DNA denotes DNA
T7902 23211-23230 GO:0010424 denotes DNA CpG methylation
T7903 23219-23230 GO_MOP_EXT:methylation denotes methylation
T7904 23245-23262 SO_EXT:satellite_unit_or_region denotes satellite repeats
T7905 23319-23328 PR_EXT:000005402 denotes p150CAF-1
T7906 23338-23343 CL_GO_EXT:cell denotes cells
T7907 23368-23375 CL:0002322 denotes ES cell
T7908 23371-23375 CL_GO_EXT:cell denotes cell
T7909 23401-23405 GO:0016246 denotes RNAi
T7910 23423-23429 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes female
T7911 23435-23439 CL_GO_EXT:cell denotes cell
T7912 23446-23449 CHEBI_SO_EXT:DNA denotes DNA
T7913 23446-23461 GO:0006306 denotes DNA methylation
T7914 23450-23461 GO_MOP_EXT:methylation denotes methylation
T7915 23491-23496 CL_GO_EXT:cell denotes cells
T7916 23540-23551 GO_MOP_EXT:methylation denotes methylation
T7917 23567-23574 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7918 23618-23633 GO:0000792 denotes heterochromatin
T7919 23645-23654 PR_EXT:000005402 denotes p150CAF-1
T7920 23664-23672 CL:0002322 denotes ES cells
T7921 23667-23672 CL_GO_EXT:cell denotes cells
T7922 23688-23692 GO:0016246 denotes RNAi
T7923 23693-23707 SO_EXT:0000755 denotes plasmid vector
T7924 23716-23723 CL:0002322 denotes ES cell
T7925 23719-23723 CL_GO_EXT:cell denotes cell
T7926 23757-23766 PR_EXT:000005402 denotes p150CAF-1
T7927 23790-23805 GO:0000792 denotes heterochromatin
T7928 23850-23853 CHEBI_SO_EXT:DNA denotes DNA
T7929 23850-23865 GO:0006306 denotes DNA methylation
T7930 23854-23865 GO_MOP_EXT:methylation denotes methylation
T7931 23881-23888 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7932 23935-23942 PR_EXT:000043452 denotes histone
T7933 23935-23942 CHEBI:15358 denotes histone
T7934 23935-23956 GO:0016570 denotes histone modifications
T7935 23943-23956 SO_EXT:sequence_alteration_entity_or_process denotes modifications
T7936 23965-23974 GO:0000785 denotes chromatin
T7937 24027-24036 GO:0000785 denotes chromatin
T7938 24069-24072 CHEBI_SO_EXT:DNA denotes DNA
T7939 24149-24159 GO:0042571 denotes antibodies
T7940 24170-24179 PR_EXT:000005402 denotes p150CAF-1
T7941 24239-24256 SO_EXT:satellite_unit_or_region denotes satellite repeats
T7942 24332-24341 PR_EXT:000005402 denotes p150CAF-1
T7943 24378-24405 GO:0005721 denotes pericentric heterochromatin
T7944 24560-24571 GO_SO_EXT:centromere_or_centromeric_region_or_centromeric_orientation denotes centromeric
T7945 24572-24580 SO_EXT:sequence_repeat_unit_or_region denotes repeated
T7946 24581-24584 CHEBI_SO_EXT:DNA denotes DNA
T7947 24649-24658 PR_EXT:000005402 denotes p150CAF-1
T7948 24703-24730 GO:0005721 denotes pericentric heterochromatin
T7949 24771-24778 SO_EXT:0001707 denotes H3K9me3
T7950 24779-24783 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes mark
T7951 24823-24832 PR_EXT:000005402 denotes p150CAF-1
T7952 24842-24847 CL_GO_EXT:cell denotes cells
T7953 26658-26667 SO_EXT:wild_type_entity_or_quality denotes wild-type
T7954 26668-26673 CL_GO_EXT:cell denotes cells
T7955 26696-26703 SO_EXT:0001707 denotes H3K9me3
T7956 26740-26744 CHEBI:51231 denotes DAPI
T7957 26807-26814 SO_EXT:0001707 denotes H3K9me3
T7958 26841-26850 PR_EXT:000005402 denotes p150CAF-1
T7959 26860-26865 CL_GO_EXT:cell denotes cells
T7960 26907-26911 PR_EXT:000005086 denotes HP1α
T7961 27038-27043 CL_GO_EXT:cell denotes cells
T7962 27149-27157 CHEBI_SO_EXT:epitope denotes epitopes
T7963 27188-27197 GO_EXT:biological_movement_or_translocation_process denotes relocated
T7964 27198-27202 CHEBI:51231 denotes DAPI
T7965 27266-27271 GO:0033186 denotes CAF-1
T7966 27275-27283 CL:0002322 denotes ES cells
T7967 27278-27283 CL_GO_EXT:cell denotes cells
T7968 27322-27337 GO:0000792 denotes heterochromatin
T7969 27376-27394 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic marking
T7970 27387-27394 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marking
T12865 27439-27448 PR_EXT:000005402 denotes p150CAF-1
T12866 27479-27484 NCBITaxon:10088 denotes mouse
T12867 27491-27504 GO:0009790 denotes embryogenesis
T12868 27512-27520 CL:0002322 denotes ES cells
T12869 27515-27520 CL_GO_EXT:cell denotes cells
T12870 27551-27556 GO:0033186 denotes CAF-1
T12871 27593-27596 CHEBI_SO_EXT:DNA denotes DNA
T12872 27593-27608 GO:0006260 denotes DNA replication
T12873 27612-27623 NCBITaxon:7742 denotes vertebrates
T12874 27628-27642 NCBITaxon:8355 denotes Xenopus laevis
T12875 27644-27653 PR_EXT:000005402 denotes p150CAF-1
T12876 27689-27693 CL_GO_EXT:cell denotes cell
T12877 27689-27703 GO:0051301 denotes cell divisions
T12878 27757-27762 GO:0033186 denotes CAF-1
T12879 27779-27788 NCBITaxon:40674 denotes mammalian
T12880 27789-27793 CL_GO_EXT:cell denotes cell
T12881 27823-27826 CHEBI_SO_EXT:DNA denotes DNA
T12882 27823-27838 GO:0006260 denotes DNA replication
T12883 27885-27890 GO:0033186 denotes CAF-1
T12884 27898-27905 GO:0005634 denotes nuclear
T12885 27922-27937 GO:0000792 denotes heterochromatin
T12886 27978-27986 CL:0002322 denotes ES cells
T12887 27981-27986 CL_GO_EXT:cell denotes cells
T12888 28004-28013 PR_EXT:000005402 denotes p150CAF-1
T12889 28023-28031 CL:0002322 denotes ES cells
T12890 28026-28031 CL_GO_EXT:cell denotes cells
T12891 28039-28042 CHEBI_SO_EXT:DNA denotes DNA
T12892 28039-28054 GO:0006260 denotes DNA replication
T12893 28110-28121 GO:0000786 denotes nucleosomal
T12894 28143-28158 GO:0000792 denotes heterochromatin
T12895 28205-28214 PR_EXT:000005402 denotes p150CAF-1
T12896 28230-28233 PR_EXT:000026474 denotes PML
T12897 28230-28240 GO:0016605 denotes PML bodies
T12898 28244-28251 CL:0002322 denotes ES cell
T12899 28247-28258 GO:0005634 denotes cell nuclei
T12900 28273-28280 GO:0005634 denotes nuclear
T12901 28332-28341 PR_EXT:000005402 denotes p150CAF-1
T12902 28377-28384 CL:0002322 denotes ES cell
T12903 28380-28384 CL_GO_EXT:cell denotes cell
T12904 28380-28393 GO:0051301 denotes cell division
T12905 28398-28402 CL_GO_EXT:cell denotes cell
T12906 28398-28408 GO:0008219 denotes cell death
T12907 28446-28461 GO:0000792 denotes heterochromatin
T12908 28561-28568 UBERON:0000922 denotes embryos
T12909 28573-28578 GO:0016265 denotes death
T12910 28582-28590 CL:0002322 denotes ES cells
T12911 28585-28590 CL_GO_EXT:cell denotes cells
T12912 28604-28609 GO:0033186 denotes CAF-1
T12913 28617-28624 GO:0005634 denotes nuclear
T12914 28641-28656 GO:0000792 denotes heterochromatin
T12915 28674-28686 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T12916 28768-28773 GO:0033186 denotes CAF-1
T12917 28812-28817 CL_GO_EXT:cell denotes cells
T12918 28822-28827 NCBITaxon:9606 denotes human
T12919 28828-28832 CL_GO_EXT:cell denotes cell
T12920 28874-28885 _FRAGMENT denotes pluripotent
T12921 28896-28901 CL:0002248 denotes cells
T12922 28886-28895 UBERON:0000922 denotes embryonic
T12923 28886-28901 CL:0002321 denotes embryonic cells
T12924 28896-28901 CL_GO_EXT:cell denotes cells
T12925 28918-28931 UBERON:0019248 denotes early embryos
T12926 28936-28944 CL:0002322 denotes ES cells
T12927 28939-28944 CL_GO_EXT:cell denotes cells
T12928 28952-28958 SO_EXT:0001026 denotes genome
T12929 28980-28993 CL:0002371 denotes somatic cells
T12930 28988-28993 CL_GO_EXT:cell denotes cells
T12931 29071-29076 GO:0033186 denotes CAF-1
T12932 29080-29095 GO:0000792 denotes heterochromatin
T12933 29128-29136 CL:0002322 denotes ES cells
T12934 29131-29136 CL_GO_EXT:cell denotes cells
T12935 29158-29167 GO:0000785 denotes chromatin
T12936 29168-29176 CHEBI_PR_EXT:protein denotes proteins
T12937 29198-29202 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T12938 29225-29234 GO:0000785 denotes chromatin
T12939 29249-29257 CL_GO_EXT:cell denotes cellular
T12940 29297-29312 GO:0000792 denotes heterochromatin
T12941 29313-29320 GO:0005634 denotes nuclear
T12942 29344-29349 GO:0033186 denotes CAF-1
T12943 29378-29392 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T12944 29393-29398 CL_GO_EXT:cell denotes cells
T12945 29449-29455 SO_EXT:0001026 denotes genome
T12946 29498-29506 CL:0002322 denotes ES cells
T12947 29501-29506 CL_GO_EXT:cell denotes cells
T12948 29539-29544 GO:0033186 denotes CAF-1
T12949 29583-29588 GO:0033186 denotes CAF-1
T12950 29592-29603 _FRAGMENT denotes pluripotent
T12951 29614-29619 CL:0002248 denotes cells
T12952 29604-29613 UBERON:0000922 denotes embryonic
T12953 29604-29619 CL:0002321 denotes embryonic cells
T12954 29614-29619 CL_GO_EXT:cell denotes cells
T12955 29639-29648 SO_EXT:biological_conservation_process_or_quality denotes conserved
T12956 29678-29698 NCBITaxon:3702 denotes Arabidopsis thaliana
T12957 29709-29714 GO:0033186 denotes CAF-1
T12958 29760-29765 GO:0033186 denotes CAF-1
T12959 29806-29818 GO:0010369 denotes chromocenter
T12960 29879-29884 GO:0033186 denotes CAF-1
T12961 29905-29920 GO:0000792 denotes heterochromatin
T12962 29937-29942 _FRAGMENT denotes early
T12963 29949-29956 UBERON:0019248 denotes embryos
T12964 29943-29948 NCBITaxon:10088 denotes mouse
T12965 29961-29966 NCBITaxon:10088 denotes mouse
T12966 29967-29975 CL:0002322 denotes ES cells
T12967 29970-29975 CL_GO_EXT:cell denotes cells
T12968 29990-29995 GO:0033186 denotes CAF-1
T12969 30059-30066 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T12970 30103-30111 SO_EXT:sequence_repeat_unit_or_region denotes repeated
T12971 30112-30121 SO_EXT:biological_sequence denotes sequences
T12972 30142-30147 NCBITaxon:10088 denotes mouse
T12973 30148-30154 SO_EXT:0001026 denotes genome
T12974 30187-30194 GO:0005634 denotes nuclear
T12975 30212-30230 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic marking
T12976 30223-30230 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marking
T12977 30234-30261 GO:0005721 denotes pericentric heterochromatin
T12978 30277-30285 CL:0002322 denotes ES cells
T12979 30280-30285 CL_GO_EXT:cell denotes cells
T12980 30322-30337 GO:0000792 denotes heterochromatin
T12981 30342-30360 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic marking
T12982 30353-30360 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marking
T12983 30406-30411 GO:0033186 denotes CAF-1
T12984 30442-30447 GO:0033186 denotes CAF-1
T12985 30455-30462 NCBITaxon:species denotes species
T12986 30537-30544 CHEBI:15358 denotes histone
T12987 30537-30547 PR_EXT:000027594 denotes histone H3
T12988 30548-30556 SO_EXT:sequence_variant_entity denotes variants
T12989 30577-30587 NCBITaxon:2759 denotes eukaryotes
T12990 30589-30594 GO:0033186 denotes CAF-1
T12991 30611-30618 NCBITaxon:40674 denotes mammals
T12992 30638-30662 NCBITaxon:4932 denotes Saccharomyces cerevisiae
T12993 30688-30695 GO:0007114 denotes budding
T12994 30688-30701 NCBITaxon:4892 denotes budding yeast
T12995 30702-30708 SO_EXT:0001026 denotes genome
T12996 30726-30741 GO:0000792 denotes heterochromatin
T12997 30780-30790 NCBITaxon:2759 denotes eukaryotes
T12998 30825-30840 GO:0000792 denotes heterochromatin
T12999 30849-30852 _FRAGMENT denotes di-
T13000 30860-30879 GO:0036123 denotes methylation at H3K9
T13001 30860-30874 _FRAGMENT denotes methylation at
T13002 30892-30897 GO:0034772 denotes H4K20
T13003 30857-30879 GO:0036124 denotes trimethylation at H3K9
T13004 30857-30874 _FRAGMENT denotes trimethylation at
T13005 30881-30886 GO:0070734 denotes H3K27
T13006 30892-30897 GO:0034773 denotes H4K20
T13007 30860-30871 GO_MOP_EXT:methylation denotes methylation
T13008 30922-30938 GO:0035328 denotes silent chromatin
T13009 30942-30955 NCBITaxon:4932 denotes S. cerevisiae
T13010 30960-30967 NCBITaxon:40674 denotes mammals
T13011 30969-30987 GO:0036123 denotes H3K9 dimethylation
T13012 30976-30987 GO_MOP_EXT:methylation denotes methylation
T13013 31040-31044 PR_EXT:000008425 denotes H3.3
T13014 31060-31073 SO_EXT:sequence_alteration_entity_or_process denotes modifications
T13015 31093-31104 GO_EXT:transcription denotes transcribed
T13016 31105-31114 GO:0000785 denotes chromatin
T13017 33635-33646 GO_MOP_EXT:methylation denotes methylation
T13018 31144-31155 GO_SO_EXT:centromere_or_centromeric_region_or_centromeric_orientation denotes centromeric
T13019 31156-31158 PR_EXT:000027594 denotes H3
T13020 31159-31166 SO_EXT:sequence_variant_entity denotes variant
T13021 31168-31181 NCBITaxon:4932 denotes S. cerevisiae
T13022 31197-31201 PR_EXT:000008425 denotes H3.3
T13023 31212-31221 GO:0010467 denotes expressed
T13024 31244-31253 GO:0000785 denotes chromatin
T13025 31259-31270 GO:0006260 denotes replication
T13026 31301-31311 NCBITaxon:2759 denotes eukaryotes
T13027 31365-31380 GO:0000792 denotes heterochromatin
T13028 31408-31413 GO:0033186 denotes CAF-1
T13029 31431-31442 GO:0006260 denotes replication
T13030 31461-31468 GO:0032991 denotes complex
T13031 31508-31515 GO:0005634 denotes nuclear
T13032 31532-31559 GO:0005721 denotes pericentric heterochromatin
T13033 31563-31570 UBERON:0000922 denotes embryos
T13034 31575-31583 CL:0002322 denotes ES cells
T13035 31578-31583 CL_GO_EXT:cell denotes cells
T13036 31657-31666 GO:0000785 denotes chromatin
T13037 31694-31701 GO:0005634 denotes nuclear
T13038 31731-31746 GO:0000792 denotes heterochromatin
T13039 31753-31762 UBERON:0000922 denotes embryonic
T13040 31916-31931 GO:0000792 denotes heterochromatin
T13041 31943-31952 PR_EXT:000005402 denotes p150CAF-1
T13042 31953-31957 SO_EXT:sequence_nullness denotes null
T13043 31958-31965 UBERON:0000922 denotes embryos
T13044 31970-31978 CL:0002322 denotes ES cells
T13045 31973-31978 CL_GO_EXT:cell denotes cells
T13046 31980-31985 GO:0033186 denotes CAF-1
T13047 32026-32041 GO:0000792 denotes heterochromatin
T13048 32152-32155 CHEBI_SO_EXT:DNA denotes DNA
T13049 32152-32167 GO:0006260 denotes DNA replication
T13050 32186-32195 PR_EXT:000005402 denotes p150CAF-1
T13051 32197-32212 GO:0000792 denotes heterochromatin
T13052 32243-32251 CHEBI:36357 denotes molecule
T13053 32344-32351 CHEBI_PR_EXT:protein denotes protein
T13054 32374-32379 GO:0033186 denotes CAF-1
T13055 32445-32460 GO:0000792 denotes heterochromatin
T13056 32468-32480 GO:0007566 denotes implantation
T13057 32481-32488 UBERON:0000922 denotes embryos
T13058 32521-32528 GO:0005634 denotes nuclear
T13059 32554-32562 _FRAGMENT denotes two-cell
T13060 32578-32584 UBERON:0007232 denotes stages
T13061 32558-32562 CL_GO_EXT:cell denotes cell
T13062 32567-32577 UBERON:0000358 denotes blastocyst
T13063 32586-32593 SO_EXT:sequence_cloning_process denotes Cloning
T13064 32609-32614 NCBITaxon:10088 denotes mouse
T13065 32633-32640 GO:0005634 denotes nuclear
T13066 32657-32675 _FRAGMENT denotes heterochromatin in
T13067 32684-32690 GO:0005720 denotes nuclei
T13068 32676-32683 CL:0002322 denotes ES cell
T13069 32679-32690 GO:0005634 denotes cell nuclei
T13070 32721-32735 UBERON:0000106 denotes one-cell stage
T13071 32725-32729 CL_GO_EXT:cell denotes cell
T13072 32756-32763 GO:0005634 denotes nuclear
T13073 32764-32772 GO_EXT:biological_movement_or_translocation_process denotes transfer
T13074 32800-32815 GO:0000792 denotes heterochromatin
T13075 32843-32850 GO:0005634 denotes nuclear
T13076 32875-32890 UBERON:0019248 denotes early embryonic
T13077 32901-32907 SO_EXT:sequence_cloning_process denotes cloned
T13078 32908-32915 UBERON:0000922 denotes embryos
T13079 32948-32963 GO:0000792 denotes heterochromatin
T13080 33008-33017 PR_EXT:000005402 denotes p150CAF-1
T13081 33027-33035 CL:0002322 denotes ES cells
T13082 33030-33035 CL_GO_EXT:cell denotes cells
T13083 33072-33076 CL_GO_EXT:cell denotes cell
T13084 33083-33089 PR_EXT:000005402 denotes Chaf1a
T13085 33089-33090 SO_EXT:sequence_nullness_or_absence denotes
T13086 33091-33092 SO_EXT:sequence_nullness_or_absence denotes
T13087 33093-33100 UBERON:0000922 denotes embryos
T13088 33123-33128 GO:0033186 denotes CAF-1
T13089 33162-33177 GO:0000792 denotes heterochromatin
T13090 33208-33212 CL_GO_EXT:cell denotes cell
T13091 33208-33222 GO:0051301 denotes cell divisions
T13092 33226-33240 UBERON_EXT:embryonic_stage_or_stage_part denotes embryonic life
T13093 33266-33273 GO:0005634 denotes nuclear
T13094 33294-33320 GO:0010468 denotes control of gene expression
T13095 33305-33309 SO_EXT:0000704 denotes gene
T13096 33357-33362 GO:0033186 denotes CAF-1
T13097 33406-33410 SO_EXT:0000704 denotes gene
T13098 33406-33421 GO:0010467 denotes gene expression
T13099 33435-33448 GO:0009790 denotes embryogenesis
T13100 33509-33518 GO:0000785 denotes chromatin
T13101 33560-33571 _FRAGMENT denotes pluripotent
T13102 33582-33587 CL:0002248 denotes cells
T13103 33572-33581 UBERON:0000922 denotes embryonic
T13104 33572-33587 CL:0002321 denotes embryonic cells
T13105 33582-33587 CL_GO_EXT:cell denotes cells
T13106 33631-33634 CHEBI_SO_EXT:DNA denotes DNA
T13107 33631-33646 GO:0006306 denotes DNA methylation
T13108 33651-33658 PR_EXT:000043452 denotes histone
T13109 33651-33658 CHEBI:15358 denotes histone
T13110 33651-33668 GO:0016570 denotes histone modifying
T13111 33659-33668 SO_EXT:sequence_alteration_process denotes modifying
T13112 33669-33676 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T13113 33722-33731 GO:0000785 denotes chromatin
T13114 33722-33740 GO:0031497 denotes chromatin assembly
T13115 33791-33802 GO:0000786 denotes nucleosomes
T13116 33804-33809 GO:0033186 denotes CAF-1
T13117 33831-33841 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic
T13118 33857-33872 GO:0000792 denotes heterochromatin
T13119 33884-33897 UBERON:0019248 denotes early embryos
T13120 33902-33910 CL:0002322 denotes ES cells
T13121 33905-33910 CL_GO_EXT:cell denotes cells
T14773 33936-33949 _FRAGMENT denotes Generation of
T14774 33973-33980 GO:0009790 denotes embryos
T14775 33950-33956 PR_EXT:000005402 denotes Chaf1a
T14776 33957-33963 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T14777 33964-33968 NCBITaxon:10088 denotes mice
T14778 33973-33980 UBERON:0000922 denotes embryos
T14779 34010-34017 SO_EXT:0001026 denotes genomic
T14780 34038-34039 CHEBI_SO_EXT:base denotes b
T14781 34046-34054 SO:0000357 denotes flanking
T14782 34055-34061 PR_EXT:000005402 denotes Chaf1a
T14783 34062-34066 SO_EXT:0000147 denotes exon
T14784 34076-34079 CHEBI_SO_EXT:DNA denotes DNA
T14785 34121-34128 SO_EXT:sequence_cloning_process denotes cloning
T14786 34138-34146 CHEBI:7507 denotes neomycin
T14787 34166-34171 CHEBI_EXT:27026 denotes toxin
T14788 34173-34182 SO_EXT:0005853 denotes cassettes
T14789 34215-34224 SO_EXT:engineered_biological_sequence denotes construct
T14790 34229-34240 GO:0009294 denotes transfected
T14791 34244-34252 CL:0002322 denotes ES cells
T14792 34247-34252 CL_GO_EXT:cell denotes cells
T14793 34287-34298 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T14794 34299-34307 CL:0002322 denotes ES cells
T14795 34302-34307 CL_GO_EXT:cell denotes cells
T14796 34321-34327 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T14797 34328-34334 PR_EXT:000005402 denotes Chaf1a
T14798 34355-34361 PR_EXT:000005402 denotes Chaf1a
T14799 34383-34389 SO_EXT:0001023 denotes allele
T14800 34431-34437 PR_EXT:000005402 denotes Chaf1a
T14801 34438-34439 SO_EXT:normal_or_wild_type_or_present denotes +
T14802 34440-34441 SO_EXT:sequence_nullness_or_absence denotes
T14803 34442-34446 NCBITaxon:10088 denotes mice
T14804 34460-34470 GO_SO_EXT:sequence_rearrangement_process denotes recombined
T14805 34471-34479 CL:0002322 denotes ES cells
T14806 34474-34479 CL_GO_EXT:cell denotes cells
T14807 34494-34505 UBERON:0000358 denotes blastocysts
T14808 34510-34517 UBERON:0000922 denotes embryos
T14809 34550-34556 PR_EXT:000005402 denotes Chaf1a
T14810 34557-34558 SO_EXT:normal_or_wild_type_or_present denotes +
T14811 34559-34560 SO_EXT:sequence_nullness_or_absence denotes
T14812 34561-34565 NCBITaxon:10088 denotes mice
T14813 34610-34617 UBERON:0000922 denotes Embryos
T14814 34651-34654 CHEBI:60004 denotes mix
T14815 34666-34681 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T14816 34682-34689 SO_EXT:0000112 denotes primers
T14817 34731-34740 SO_EXT:wild_type_entity_or_quality denotes wild-type
T14818 34745-34751 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T14819 34752-34759 SO_EXT:0001023 denotes alleles
T14820 34887-34902 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T14821 34903-34910 SO_EXT:0000112 denotes primers
T14822 34977-34984 CHEBI:2511 denotes agarose
T14823 35025-35034 SO_EXT:wild_type_entity_or_quality denotes wild-type
T14824 35040-35042 SO_EXT:0000028 denotes bp
T14825 35048-35059 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T14826 35065-35067 SO_EXT:0000028 denotes bp
T14827 35069-35076 SO_EXT:0001023 denotes alleles
T15643 35079-35088 PR_EXT:000005402 denotes P150CAF-1
T15644 35102-35106 GO:0016246 denotes RNAi
T15645 35112-35116 GO:0016246 denotes RNAi
T15646 35117-35131 SO_EXT:0000755 denotes plasmid vector
T15647 35172-35177 NCBITaxon:10088 denotes mouse
T15648 35181-35189 SO_EXT:0000167 denotes promoter
T15649 35196-35205 CHEBI:17939 denotes puromycin
T15650 35216-35220 SO_EXT:0000704 denotes gene
T15651 35306-35312 SO_EXT:0000440 denotes vector
T15652 35332-35336 SO_EXT:0000704 denotes gene
T15653 35368-35373 SO_EXT:0000704 denotes genes
T15654 35377-35385 CL:0002322 denotes ES cells
T15655 35380-35385 CL_GO_EXT:cell denotes cells
T15656 35420-35425 CL_GO_EXT:cell denotes cells
T15657 35502-35507 CL_GO_EXT:cell denotes cells
T15658 35522-35530 SO_EXT:biological_sequence denotes sequence
T15659 35534-35543 PR_EXT:000005402 denotes p150CAF-1
T15660 35544-35549 SO_EXT:0000646 denotes siRNA
T15661 35551-35572 SO_EXT:0000646 denotes short interfering RNA
T15662 35569-35572 CHEBI_SO_EXT:RNA denotes RNA
T15663 35590-35596 SO_EXT:sequence_cloning_process denotes cloned
T15664 35607-35614 SO_EXT:0000155 denotes plasmid
T15665 35628-35634 SO_EXT:0000440 denotes vector
T15666 35635-35644 GO:0010467 denotes expressed
T15667 35647-35652 SO_EXT:0000646 denotes siRNA
T15668 35670-35673 CHEBI_SO_EXT:RNA denotes RNA
T15669 35670-35685 GO:0006401 denotes RNA degradation
T15670 35687-35695 CL:0002322 denotes ES cells
T15671 35690-35695 CL_GO_EXT:cell denotes cells
T15672 35701-35712 GO:0009294 denotes transfected
T15673 35741-35744 CHEBI_SO_EXT:RNA denotes RNA
T15674 35745-35759 SO_EXT:0000755 denotes plasmid vector
T15675 35773-35780 CHEBI:5291 denotes gelatin
T15676 35847-35856 CHEBI:17939 denotes Puromycin
T15677 35903-35908 CL_GO_EXT:cell denotes cells
T15678 35964-35973 PR_EXT:000005402 denotes p150CAF-1
T15679 35974-35978 GO:0016246 denotes RNAi
T15680 35979-35985 SO_EXT:0000440 denotes vector
T15681 36035-36040 GO:0033186 denotes CAF-1
T15682 36059-36064 CL_GO_EXT:cell denotes cells
T15683 36131-36140 PR_EXT:000005402 denotes p150CAF-1
T15684 36141-36151 GO:0010467 denotes expression
T15685 36181-36186 CL_GO_EXT:cell denotes cells
T15686 36218-36222 SO_EXT:0000704 denotes gene
T15687 36262-36273 GO:0009294 denotes transfected
T15688 36294-36298 GO:0016246 denotes RNAi
T15689 36299-36313 SO_EXT:0000755 denotes plasmid vector
T15690 36430-36435 CL_GO_EXT:cell denotes Cells
T15691 36441-36452 GO_EXT:trypsinization denotes trypsinized
T15692 36519-36528 CHEBI:17939 denotes puromycin
T16159 36531-36535 CL_GO_EXT:cell denotes Cell
T16160 36548-36556 CL:0002322 denotes ES cells
T16161 36551-36556 CL_GO_EXT:cell denotes cells
T16162 36598-36602 SO_EXT:0000704 denotes gene
T16163 36619-36627 CL:0002322 denotes ES cells
T16164 36622-36627 CL_GO_EXT:cell denotes cells
T16165 36645-36649 GO:0016246 denotes RNAi
T16166 36679-36683 CL_GO_EXT:cell denotes cell
T16167 36713-36720 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T16168 36721-36725 GO_EXT:breeding denotes bred
T16169 36739-36744 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T16170 36758-36766 CL:0002322 denotes ES cells
T16171 36761-36766 CL_GO_EXT:cell denotes cells
T16172 36841-36848 UBERON:0000922 denotes embryos
T16568 36892-36897 CL_GO_EXT:cell denotes Cells
T16569 36935-36951 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T16570 37020-37027 UBERON:0000922 denotes embryos
T16571 37067-37071 CHEBI_EXT:37527 denotes acid
T16572 37086-37100 UBERON:0000086 denotes zona pellucida
T16573 37186-37194 CL:0002322 denotes ES cells
T16574 37189-37194 CL_GO_EXT:cell denotes cells
T16575 37196-37206 GO:0042571 denotes Antibodies
T16576 37212-37216 PR_EXT:000005086 denotes HP1α
T16577 37301-37305 CHEBI:472552 denotes BrdU
T16578 37348-37352 PR_EXT:000012421 denotes PCNA
T16579 37380-37383 PR_EXT:000026474 denotes PML
T16580 37480-37490 GO:0042571 denotes Antibodies
T16581 37496-37501 NCBITaxon:10088 denotes mouse
T16582 37502-37510 PR_EXT:000005402 denotes p150CAF1
T16583 37525-37532 SO_EXT:0001707 denotes H3K9me3
T16584 37615-37625 GO:0042571 denotes antibodies
T16585 37646-37655 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T16586 37656-37662 CHEBI_SO_EXT:molecular_probe denotes Probes
T16913 37727-37732 CL_GO_EXT:cell denotes Cells
T16914 37738-37743 GO:0019835 denotes lysed
T16915 37754-37760 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T16916 37783-37786 CHEBI:8984 denotes SDS
T16917 37814-37824 GO:0042571 denotes antibodies
T16918 37833-37842 PR_EXT:000005402 denotes p150CAF-1
T16919 37867-37871 PR_EXT:000005086 denotes HP1α
T16920 37897-37904 CHEBI:15358 denotes Histone
T16921 37897-37907 PR_EXT:000027594 denotes Histone H3
T16922 37924-37931 SO_EXT:0001707 denotes H3K9me3
T16923 37953-37960 PR_EXT:000003676 denotes β-actin
T17162 37983-37986 CHEBI_SO_EXT:DNA denotes DNA
T17163 37993-37999 CHEBI_SO_EXT:molecular_probe denotes Probes
T17164 38032-38038 CHEBI:15956 denotes Biotin
T17165 38042-38046 CHEBI_EXT:dUTP denotes dUTP
T17166 38050-38061 CHEBI:42098 denotes Digoxigenin
T17167 38065-38069 CHEBI_EXT:dUTP denotes dUTP
T17168 38098-38105 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T17169 38106-38112 CHEBI_SO_EXT:molecular_probe denotes probes
T17170 38136-38147 GO:0006412 denotes translation
T17877 38389-38395 GO:0005634 denotes Nuclei
T17878 38409-38417 GO_EXT:0004518 denotes nuclease
T17879 38433-38444 CHEBI_EXT:biochemical denotes biochemical
T17880 38457-38466 GO:0000785 denotes chromatin
T17881 38468-38476 CL:0002322 denotes ES cells
T17882 38471-38476 CL_GO_EXT:cell denotes cells
T17883 38513-38519 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T17884 38529-38533 CHEBI:9754 denotes Tris
T17885 38534-38537 CHEBI:17883 denotes HCl
T17886 38554-38561 CHEBI:17992 denotes sucrose
T17887 38569-38572 CHEBI:32588 denotes KCl
T17888 38580-38584 CHEBI:26710 denotes NaCl
T17889 38591-38596 CHEBI:6636 denotes MgCl2
T17890 38605-38609 CHEBI_EXT:EGTA denotes EGTA
T17891 38674-38680 GO:0005634 denotes Nuclei
T17892 38749-38756 CHEBI:17992 denotes sucrose
T17893 38767-38773 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T17894 38787-38794 CHEBI:17992 denotes sucrose
T17895 38815-38823 GO_EXT:0004518 denotes nuclease
T17896 38824-38830 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T17897 38838-38842 CHEBI:9754 denotes Tris
T17898 38843-38846 CHEBI:17883 denotes HCl
T17899 38863-38867 CHEBI:26710 denotes NaCl
T17900 38876-38883 CHEBI:17992 denotes sucrose
T17901 38890-38895 CHEBI:6636 denotes MgCl2
T17902 38902-38907 CHEBI:3312 denotes CaCl2
T17903 38922-38928 GO:0005634 denotes nuclei
T17904 39000-39007 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T17905 39084-39091 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T17906 39127-39130 CHEBI:8984 denotes SDS
T17907 39141-39145 CHEBI_EXT:EDTA denotes EDTA
T17908 39156-39160 CHEBI_SO_EXT:DNA denotes DNAs
T17909 39178-39188 GO_EXT:0008233 denotes proteinase
T17910 39213-39219 CHEBI:15882 denotes phenol
T17911 39220-39230 CHEBI:35255 denotes chloroform
T17912 39246-39257 CHEBI:17824 denotes isopropanol
T17913 39300-39307 CHEBI:15358 denotes histone
T17914 39300-39310 PR_EXT:000027594 denotes histone H3
T17915 39316-39325 GO:0000785 denotes chromatin
T17916 39341-39345 PR_EXT:000005402 denotes p150
T17917 39355-39360 CL_GO_EXT:cell denotes cells
T17918 39371-39377 GO:0005634 denotes nuclei
T17919 39414-39420 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T17920 39430-39435 CHEBI:46756 denotes Hepes
T17921 39449-39457 CHEBI:17754 denotes Glycerol
T17922 39464-39469 CHEBI:6636 denotes MgCl2
T17923 39491-39494 CHEBI:18320 denotes DTT
T17924 39503-39507 CHEBI:8102 denotes PMSF
T17925 39570-39574 CHEBI:26710 denotes NaCl
T17926 39671-39678 CHEBI:15358 denotes histone
T17927 39671-39681 PR_EXT:000027594 denotes histone H3
T17928 39682-39690 GO:0042571 denotes antibody
T18609 39726-39735 GO:0000785 denotes chromatin
T18610 39760-39771 GO:0000786 denotes nucleosomes
T18611 39809-39818 GO:0000785 denotes chromatin
T18612 39869-39879 GO:0042571 denotes antibodies
T18613 39903-39910 CHEBI_PR_EXT:protein denotes protein
T18614 39960-39963 CHEBI_SO_EXT:DNA denotes DNA
T18615 39992-39999 CHEBI:2511 denotes agarose
T18616 40036-40049 GO:0097617 denotes Hybridization
T18617 40151-40161 GO:0042571 denotes Antibodies
T18618 40211-40221 GO:0042571 denotes Antibodies
T18619 40226-40233 SO_EXT:0001707 denotes H3K9me3
T18620 40359-40361 SO_EXT:0000028 denotes bp
T18621 40368-40373 PR_EXT:P23940 denotes BamHI
T18622 40400-40409 SO_EXT:satellite_unit_or_region denotes satellite
T18623 40410-40415 CHEBI_SO_EXT:molecular_probe denotes probe
T18624 40435-40437 SO_EXT:0000028 denotes bp
T18625 40444-40451 PR_EXT:P43870 denotes HindIII
T18626 40495-40501 SO_EXT:sequence_copy_entity denotes copies
T18627 40513-40515 SO_EXT:0000028 denotes bp
T18628 40522-40538 SO_EXT:satellite_unit_or_region denotes satellite repeat
T18629 40545-40551 CHEBI_SO_EXT:molecular_probe denotes Probes
T18630 40608-40613 CHEBI_SO_EXT:molecular_probe denotes probe
T7612 10085-10098 CL:0002371 denotes somatic cells
R792 T7721 T7720 _lexicallyChainedTo nucleus,periphery of
R793 T7626 T7625 _lexicallyChainedTo stages,two-cell
R794 T7638 T7637 _lexicallyChainedTo stages,four-cell
R796 T7649 T7648 _lexicallyChainedTo stages,two-cell
R797 T7657 T7656 _lexicallyChainedTo cell stage,eight-
R798 T7664 T7663 _lexicallyChainedTo nuclei,periphery of
R799 T7677 T7676 _lexicallyChainedTo cell stage,two-
R800 T7686 T7685 _lexicallyChainedTo nuclei,heterochromatin within
R801 T7815 T7814 _lexicallyChainedTo nucleus,heterochromatin in
R802 T7825 T7824 _lexicallyChainedTo chromosomes,domains from
R803 T7835 T7834 _lexicallyChainedTo chromosomes,domains from
R804 T7854 T7853 _lexicallyChainedTo H4,histone
R3069 T12921 T12920 _lexicallyChainedTo cells,pluripotent
R3070 T12951 T12950 _lexicallyChainedTo cells,pluripotent
R3071 T12963 T12962 _lexicallyChainedTo embryos,early
R3072 T13000 T12999 _lexicallyChainedTo methylation at H3K9,di-
R3073 T13001 T12999 _lexicallyChainedTo methylation at,di-
R3074 T13002 T13001 _lexicallyChainedTo H4K20,methylation at
R3075 T13005 T13004 _lexicallyChainedTo H3K27,trimethylation at
R3076 T13006 T13004 _lexicallyChainedTo H4K20,trimethylation at
R3077 T13060 T13059 _lexicallyChainedTo stages,two-cell
R3078 T13067 T13066 _lexicallyChainedTo nuclei,heterochromatin in
R3079 T13102 T13101 _lexicallyChainedTo cells,pluripotent
R4194 T14774 T14773 _lexicallyChainedTo embryos,Generation of
R5 T715 T714 _lexicallyChainedTo Cells,Pluripotent
R6 T746 T745 _lexicallyChainedTo stages,two-cell
R7 T756 T755 _lexicallyChainedTo cell stage,two-
R8 T776 T775 _lexicallyChainedTo marks,epigenetic
R9 T793 T792 _lexicallyChainedTo cells,pluripotent
R325 T2211 T2210 _lexicallyChainedTo H4,histone
R326 T2271 T2270 _lexicallyChainedTo cells,embryonic stem
R327 T2271 T2272 _lexicallyChainedTo cells,ES
R328 T2284 T2283 _lexicallyChainedTo embryos,early
R329 T2293 T2292 _lexicallyChainedTo cells,pluripotent

2_test

Id Subject Object Predicate Lexical cue
17083276-11689958-85837791 3448-3449 11689958 denotes 1
17083276-11498580-85837792 3450-3451 11498580 denotes 2
17083276-15809273-85837793 3619-3620 15809273 denotes 3
17083276-14671313-85837793 3619-3620 14671313 denotes 3
17083276-12209141-85837793 3619-3620 12209141 denotes 3
17083276-15996204-85837794 3829-3830 15996204 denotes 6
17083276-15020040-85837795 4073-4074 15020040 denotes 7
17083276-12923523-85837796 4075-4076 12923523 denotes 8
17083276-7600578-85837797 4294-4295 7600578 denotes 9
17083276-8808624-85837798 4296-4298 8808624 denotes 10
17083276-14718166-85837799 4545-4547 14718166 denotes 11
17083276-16212490-85837800 4548-4550 16212490 denotes 12
17083276-10549285-85837801 4852-4854 10549285 denotes 13
17083276-12697822-85837801 4852-4854 12697822 denotes 13
17083276-15327775-85837801 4852-4854 15327775 denotes 13
17083276-15306854-85837802 5027-5029 15306854 denotes 16
17083276-15306854-85837803 10036-10038 15306854 denotes 16
17083276-11336697-85837804 10039-10041 11336697 denotes 17
17083276-14532126-85837804 10039-10041 14532126 denotes 17
17083276-15071554-85837804 10039-10041 15071554 denotes 17
17083276-15302854-85837805 10218-10220 15302854 denotes 20
17083276-15598472-85837806 10438-10440 15598472 denotes 21
17083276-15306854-85837807 13316-13318 15306854 denotes 16
17083276-15077145-85837808 15068-15070 15077145 denotes 22
17083276-15306854-85837809 15769-15771 15306854 denotes 16
17083276-14519857-85837810 15772-15774 14519857 denotes 23
17083276-12620223-85837811 15775-15777 12620223 denotes 24
17083276-15302854-85837812 18189-18191 15302854 denotes 20
17083276-1606614-85837813 19903-19905 1606614 denotes 47
17083276-6694730-85837814 19937-19939 6694730 denotes 48
17083276-14718166-85837815 21424-21426 14718166 denotes 11
17083276-16212490-85837816 21427-21429 16212490 denotes 12
17083276-1606614-85837817 22936-22938 1606614 denotes 47
17083276-11782440-85837818 23232-23234 11782440 denotes 25
17083276-16244654-85837819 23498-23500 16244654 denotes 26
17083276-15702071-85837820 23958-23960 15702071 denotes 27
17083276-15273407-85837821 24038-24040 15273407 denotes 28
17083276-15145825-85837822 24142-24144 15145825 denotes 29
17083276-15128874-85837823 24145-24147 15128874 denotes 30
17083276-15678104-85837824 24621-24623 15678104 denotes 31
17083276-11701123-85837825 24785-24787 11701123 denotes 32
17083276-1606614-85837826 25311-25313 1606614 denotes 47
17083276-1606614-85837827 25821-25823 1606614 denotes 47
17083276-8013255-85837828 25989-25991 8013255 denotes 49
17083276-9771701-85837829 26082-26084 9771701 denotes 50
17083276-15145825-85837830 26782-26784 15145825 denotes 29
17083276-11296234-85837831 27741-27743 11296234 denotes 33
17083276-15306854-85837832 27840-27842 15306854 denotes 16
17083276-14519857-85837833 27843-27845 14519857 denotes 23
17083276-12620223-85837834 27846-27848 12620223 denotes 24
17083276-15024074-85837835 27849-27851 15024074 denotes 34
17083276-16399082-85837836 29236-29238 16399082 denotes 35
17083276-11163246-85837837 29747-29749 11163246 denotes 36
17083276-16452472-85837838 29825-29827 16452472 denotes 37
17083276-9030687-85837839 30664-30666 9030687 denotes 38
17083276-16267050-85837840 31124-31126 16267050 denotes 39
17083276-16212490-85837841 31313-31315 16212490 denotes 12
17083276-14718166-85837842 31470-31472 14718166 denotes 11
17083276-10549285-85837843 32381-32383 10549285 denotes 13
17083276-15306854-85837844 32384-32386 15306854 denotes 16
17083276-16680825-85837845 32424-32426 16680825 denotes 40
17083276-16680825-85837846 32774-32776 16680825 denotes 40
17083276-15598472-85837847 33322-33324 15598472 denotes 21
17083276-15198979-85837848 33325-33327 15198979 denotes 41
17083276-15809273-85837849 33678-33679 15809273 denotes 3
17083276-15306854-85837850 35582-35584 15306854 denotes 16
17083276-12529396-85837851 36558-36560 12529396 denotes 42
17083276-11236671-85837852 36866-36868 11236671 denotes 43
17083276-11175742-85837853 37012-37014 11175742 denotes 44
17083276-15306854-85837854 37512-37514 15306854 denotes 16
17083276-15306854-85837855 37845-37847 15306854 denotes 16
17083276-15302854-85837856 38027-38029 15302854 denotes 20
17083276-15302854-85837857 38189-38191 15302854 denotes 20
17083276-15273407-85837858 39796-39798 15273407 denotes 28
17083276-11593003-85837859 40418-40420 11593003 denotes 45
17083276-12867029-85837859 40418-40420 12867029 denotes 45
17083276-1606614-85837859 40418-40420 1606614 denotes 45
17083276-8013255-85837860 40540-40542 8013255 denotes 49
17083276-12867029-85837861 40596-40598 12867029 denotes 46
17083276-1606614-85837861 40596-40598 1606614 denotes 46
17083276-6694730-85837861 40596-40598 6694730 denotes 46
17083276-9771701-85837862 40649-40651 9771701 denotes 50
T50250 3448-3449 11689958 denotes 1
T78309 3450-3451 11498580 denotes 2
T83513 3619-3620 15809273 denotes 3
T75331 3619-3620 14671313 denotes 3
T60495 3619-3620 12209141 denotes 3
T48022 3829-3830 15996204 denotes 6
T53440 4073-4074 15020040 denotes 7
T31781 4075-4076 12923523 denotes 8
T40521 4294-4295 7600578 denotes 9
T17376 4296-4298 8808624 denotes 10
T52713 4545-4547 14718166 denotes 11
T53499 4548-4550 16212490 denotes 12
T70799 4852-4854 10549285 denotes 13
T50230 4852-4854 12697822 denotes 13
T88647 4852-4854 15327775 denotes 13
T52730 5027-5029 15306854 denotes 16
T85283 10036-10038 15306854 denotes 16
T95548 10039-10041 11336697 denotes 17
T47164 10039-10041 14532126 denotes 17
T89267 10039-10041 15071554 denotes 17
T79104 10218-10220 15302854 denotes 20
T19555 10438-10440 15598472 denotes 21
T8277 13316-13318 15306854 denotes 16
T48667 15068-15070 15077145 denotes 22
T83132 15769-15771 15306854 denotes 16
T39792 15772-15774 14519857 denotes 23
T62977 15775-15777 12620223 denotes 24
T32017 18189-18191 15302854 denotes 20
T91663 19903-19905 1606614 denotes 47
T5011 19937-19939 6694730 denotes 48
T63760 21424-21426 14718166 denotes 11
T93971 21427-21429 16212490 denotes 12
T60830 22936-22938 1606614 denotes 47
T68317 23232-23234 11782440 denotes 25
T4146 23498-23500 16244654 denotes 26
T27479 23958-23960 15702071 denotes 27
T52202 24038-24040 15273407 denotes 28
T4457 24142-24144 15145825 denotes 29
T22200 24145-24147 15128874 denotes 30
T3965 24621-24623 15678104 denotes 31
T41821 24785-24787 11701123 denotes 32
T42866 25311-25313 1606614 denotes 47
T25351 25821-25823 1606614 denotes 47
T15798 25989-25991 8013255 denotes 49
T32061 26082-26084 9771701 denotes 50
T1911 26782-26784 15145825 denotes 29
T24836 27741-27743 11296234 denotes 33
T83175 27840-27842 15306854 denotes 16
T35989 27843-27845 14519857 denotes 23
T18539 27846-27848 12620223 denotes 24
T73645 27849-27851 15024074 denotes 34
T40052 29236-29238 16399082 denotes 35
T41085 29747-29749 11163246 denotes 36
T65299 29825-29827 16452472 denotes 37
T48959 30664-30666 9030687 denotes 38
T40627 31124-31126 16267050 denotes 39
T76754 31313-31315 16212490 denotes 12
T49098 31470-31472 14718166 denotes 11
T44850 32381-32383 10549285 denotes 13
T48971 32384-32386 15306854 denotes 16
T53657 32424-32426 16680825 denotes 40
T4581 32774-32776 16680825 denotes 40
T57577 33322-33324 15598472 denotes 21
T19321 33325-33327 15198979 denotes 41
T72450 33678-33679 15809273 denotes 3
T36041 35582-35584 15306854 denotes 16
T46532 36558-36560 12529396 denotes 42
T26707 36866-36868 11236671 denotes 43
T3704 37012-37014 11175742 denotes 44
T95429 37512-37514 15306854 denotes 16
T63338 37845-37847 15306854 denotes 16
T22708 38027-38029 15302854 denotes 20
T71895 38189-38191 15302854 denotes 20
T79362 39796-39798 15273407 denotes 28
T43192 40418-40420 11593003 denotes 45
T47693 40418-40420 12867029 denotes 45
T79851 40418-40420 1606614 denotes 45
T53573 40540-40542 8013255 denotes 49
T63565 40596-40598 12867029 denotes 46
T20351 40596-40598 1606614 denotes 46
T664 40596-40598 6694730 denotes 46
T4099 40649-40651 9771701 denotes 50

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T645 0-5 GO:0033186 denotes CAF-1
T646 23-38 GO:0000792 denotes Heterochromatin
T647 55-66 _FRAGMENT denotes Pluripotent
T648 77-82 CL:0002248 denotes Cells
T649 67-76 UBERON:0000922 denotes Embryonic
T650 67-82 CL:0002321 denotes Embryonic Cells
T651 136-145 NCBITaxon:40674 denotes mammalian
T652 159-168 GO:0000785 denotes chromatin
T653 219-225 SO:0001026 denotes genome
T654 287-296 GO:0000785 denotes chromatin
T655 287-305 GO:0031497 denotes chromatin assembly
T656 356-374 GO:0031497 denotes chromatin assembly
T657 356-383 GO:0033186 denotes chromatin assembly factor 1
T658 385-390 GO:0033186 denotes CAF-1
T659 403-415 GO:0007566 denotes implantation
T660 444-449 NCBITaxon:10088 denotes mouse
T661 491-495 SO:0000704 denotes gene
T662 524-533 PR:000005402 denotes p150CAF-1
T663 543-552 PR:000005402 denotes p150CAF-1
T664 638-647 PR:000005402 denotes p150CAF-1
T665 657-664 UBERON:0000922 denotes embryos
T666 702-709 GO:0005634 denotes nuclear
T667 739-754 GO:0000792 denotes heterochromatin
T668 794-801 UBERON:0000922 denotes embryos
T669 803-818 GO:0000792 denotes heterochromatin
T670 867-875 _FRAGMENT denotes two-cell
T671 891-897 UBERON:0007232 denotes stages
T672 880-890 UBERON:0000358 denotes blastocyst
T673 902-911 PR:000005402 denotes p150CAF-1
T674 933-940 UBERON:0000922 denotes embryos
T675 970-985 GO:0000792 denotes heterochromatin
T676 1028-1043 GO:0000792 denotes heterochromatin
T677 1047-1051 _FRAGMENT denotes two-
T678 1060-1070 UBERON:0007232 denotes cell stage
T679 1055-1070 UBERON:0007233 denotes four-cell stage
T680 1081-1088 UBERON:0000922 denotes embryos
T681 1106-1111 GO:0033186 denotes CAF-1
T682 1146-1161 GO:0000792 denotes heterochromatin
T683 1172-1184 GO:0007566 denotes implantation
T684 1201-1210 UBERON:0000922 denotes embryonic
T685 1201-1221 CL:0002322 denotes embryonic stem cells
T686 1236-1245 PR:000005402 denotes p150CAF-1
T687 1252-1268 GO:0016246 denotes RNA interference
T688 1343-1370 GO:0005721 denotes pericentric heterochromatin
T689 1401-1406 GO:0033186 denotes CAF-1
T690 1462-1469 PR:000043452 denotes histone
T691 1462-1469 CHEBI:15358 denotes histone
T692 1462-1481 GO:0016571 denotes histone methylation
T693 1504-1531 GO:0005721 denotes pericentric heterochromatin
T694 1554-1569 GO:0000792 denotes heterochromatin
T695 1587-1596 PR:000005402 denotes p150CAF-1
T696 1606-1611 NCBITaxon:10088 denotes mouse
T697 1612-1621 UBERON:0000922 denotes embryonic
T698 1622-1633 CL:0000057 denotes fibroblasts
T699 1703-1708 GO:0033186 denotes CAF-1
T700 1738-1753 GO:0000792 denotes heterochromatin
T701 1770-1781 _FRAGMENT denotes pluripotent
T702 1792-1797 CL:0002248 denotes cells
T703 1782-1791 UBERON:0000922 denotes embryonic
T704 1782-1797 CL:0002321 denotes embryonic cells
T705 1838-1847 GO:0000785 denotes chromatin
T706 1838-1856 GO:0031497 denotes chromatin assembly
T707 1870-1881 GO:0065007 denotes controlling
T708 1937-1943 SO:0001026 denotes genome
T709 1947-1960 UBERON:0019248 denotes early embryos
T710 1965-1974 UBERON:0000922 denotes embryonic
T711 1965-1985 CL:0002322 denotes embryonic stem cells
T2060 3244-3249 NCBITaxon:10088 denotes mouse
T2061 3254-3266 GO:0007566 denotes implantation
T2062 3284-3290 SO:0001026 denotes genome
T2063 3351-3360 UBERON:0000922 denotes embryonic
T2064 3361-3365 SO:0000704 denotes gene
T2065 3361-3376 GO:0010467 denotes gene expression
T2066 3508-3523 GO:0006306 denotes DNA methylation
T2067 3592-3601 GO:0000785 denotes chromatin
T2068 3667-3674 PR:000043452 denotes histone
T2069 3667-3674 CHEBI:15358 denotes histone
T2070 3667-3684 GO:0016570 denotes histone modifying
T2071 3694-3703 GO:0000785 denotes chromatin
T2072 3694-3714 GO:0006338 denotes chromatin remodeling
T2073 3728-3735 PR:000043452 denotes histone
T2074 3728-3735 CHEBI:15358 denotes histone
T2075 3758-3770 GO:0007566 denotes implantation
T2076 3790-3800 CL:0000034 denotes stem cells
T2077 3814-3827 UBERON:0019248 denotes early embryos
T2078 3856-3863 PR:000043452 denotes histone
T2079 3856-3863 CHEBI:15358 denotes histone
T2080 3879-3888 GO:0000785 denotes chromatin
T2081 3879-3899 GO:0006338 denotes chromatin remodeling
T2082 3900-3909 GO:0032991 denotes complexes
T2083 3937-3947 GO:0000786 denotes nucleosome
T2084 3937-3956 GO:0006334 denotes nucleosome assembly
T2085 4011-4018 GO:0065007 denotes control
T2086 4019-4028 GO:0000785 denotes chromatin
T2087 4019-4037 GO:0031497 denotes chromatin assembly
T2088 4085-4092 PR:000043452 denotes histone
T2089 4085-4092 CHEBI:15358 denotes histone
T2090 4105-4123 GO:0031497 denotes chromatin assembly
T2091 4105-4132 GO:0033186 denotes chromatin assembly factor 1
T2092 4134-4139 GO:0033186 denotes CAF-1
T2093 4161-4165 PR:000005402 denotes p150
T2094 4167-4170 PR:000005403 denotes p60
T2095 4176-4179 PR:000013776 denotes p48
T2096 4181-4188 GO:0032991 denotes complex
T2097 4204-4211 CHEBI:15358 denotes histone
T2098 4204-4214 PR:000027594 denotes histone H3
T2099 4204-4211 _FRAGMENT denotes histone
T2100 4219-4221 PR:000008603 denotes H4
T2101 4267-4278 GO:0006260 denotes replication
T2102 4282-4292 GO:0006281 denotes DNA repair
T2103 4315-4320 GO:0033186 denotes CAF-1
T2104 4334-4341 CHEBI:15358 denotes histone
T2105 4334-4344 PR:000027594 denotes histone H3
T2106 4363-4372 GO:0000785 denotes chromatin
T2107 4398-4411 GO:0071897 denotes DNA synthesis
T2108 4430-4437 PR:000043452 denotes histone
T2109 4430-4437 CHEBI:15358 denotes histone
T2110 4449-4453 PR:000008570 denotes HIRA
T2111 4492-4496 PR:000008425 denotes H3.3
T2112 4510-4523 GO:0071897 denotes DNA synthesis
T2113 4582-4591 GO:0000785 denotes chromatin
T2114 4582-4600 GO:0031497 denotes chromatin assembly
T2115 4611-4616 GO:0033186 denotes CAF-1
T2116 4660-4675 GO:0000792 denotes heterochromatin
T2117 4687-4702 GO:0000792 denotes heterochromatin
T2118 4687-4712 PR:P05205 denotes heterochromatin protein 1
T2119 4714-4717 PR:P05205 denotes HP1
T2120 4723-4727 PR:000010214 denotes MBD1
T2121 4750-4756 SO:0000417 denotes domain
T2122 4779-4786 PR:000043452 denotes histone
T2123 4779-4786 CHEBI:15358 denotes histone
T2124 4814-4821 PR:000043452 denotes histone
T2125 4814-4821 CHEBI:15358 denotes histone
T2126 4873-4882 PR:000005402 denotes p150CAF-1
T2127 4907-4918 GO:0006260 denotes replication
T2128 4936-4939 PR:P05205 denotes HP1
T2129 4940-4949 CHEBI:36357 denotes molecules
T2130 4953-4964 GO:0006260 denotes replication
T2131 4953-4970 SO:0000296 denotes replication sites
T2132 4974-5001 GO:0005721 denotes pericentric heterochromatin
T2133 5018-5025 GO:0051320 denotes S phase
T2134 5077-5082 GO:0033186 denotes CAF-1
T2135 5090-5118 GO:0031507 denotes formation of heterochromatin
T2136 5103-5118 GO:0000792 denotes heterochromatin
T2137 5215-5222 PR:000043452 denotes histone
T2138 5215-5222 CHEBI:15358 denotes histone
T2139 5357-5364 NCBITaxon:40674 denotes mammals
T2140 5372-5389 CL:0002248 denotes pluripotent cells
T2141 5398-5407 UBERON:0000922 denotes embryonic
T2142 5398-5412 _FRAGMENT denotes embryonic stem
T2143 5418-5423 CL:0002322 denotes cells
T2144 5414-5416 _FRAGMENT denotes ES
T2145 5466-5471 GO:0033186 denotes CAF-1
T2146 5485-5490 NCBITaxon:10088 denotes mouse
T2147 5506-5513 SO:0000704 denotes genetic
T2148 5530-5538 CL:0002322 denotes ES cells
T2149 5558-5574 GO:0016246 denotes RNA interference
T2150 5576-5580 GO:0016246 denotes RNAi
T2151 5596-5601 GO:0033186 denotes CAF-1
T2152 5632-5637 _FRAGMENT denotes early
T2153 5644-5651 UBERON:0019248 denotes embryos
T2154 5638-5643 NCBITaxon:10088 denotes mouse
T2155 5656-5664 CL:0002322 denotes ES cells
T2156 5691-5696 GO:0033186 denotes CAF-1
T2157 5764-5779 GO:0000792 denotes heterochromatin
T2158 5791-5802 _FRAGMENT denotes pluripotent
T2159 5813-5818 CL:0002248 denotes cells
T2160 5803-5812 UBERON:0000922 denotes embryonic
T2161 5803-5818 CL:0002321 denotes embryonic cells
T7310 10980-10984 CHEBI:51231 denotes DAPI
T7311 11021-11036 GO:0000792 denotes heterochromatin
T7312 11060-11067 GO:0005634 denotes nuclear
T7313 11084-11099 GO:0000792 denotes heterochromatin
T7314 11136-11148 GO:0007566 denotes implantation
T7315 11174-11182 _FRAGMENT denotes two-cell
T7316 11198-11204 UBERON:0007232 denotes stages
T7317 11187-11197 UBERON:0000358 denotes blastocyst
T7318 11209-11215 PR:000005402 denotes Chaf1a
T7319 11223-11230 UBERON:0000922 denotes embryos
T7320 11263-11269 _FRAGMENT denotes eight-
T7321 11277-11287 UBERON:0007236 denotes cell stage
T7322 11289-11293 CHEBI:51231 denotes DAPI
T7241 5837-5841 SO:0000704 denotes gene
T7242 5855-5863 CL:0002322 denotes ES cells
T7243 5874-5878 SO:0000147 denotes exon
T7244 5888-5894 PR:000005402 denotes Chaf1a
T7245 5895-5899 SO:0000704 denotes gene
T7246 5915-5924 PR:000005402 denotes p150CAF-1
T7247 5938-5944 PR:000005402 denotes Chaf1a
T7248 5949-5953 NCBITaxon:10088 denotes mice
T7249 5959-5963 GO:0007567 denotes born
T7250 6098-6102 NCBITaxon:10088 denotes mice
T7251 6137-6143 PR:000005402 denotes Chaf1a
T7252 6148-6152 NCBITaxon:10088 denotes mice
T7253 6181-6187 PR:000005402 denotes Chaf1a
T7254 6192-6199 UBERON:0000922 denotes embryos
T7255 6233-6245 GO:0007566 denotes implantation
T7256 6279-6285 PR:000005402 denotes Chaf1a
T7257 6290-6297 UBERON:0000922 denotes embryos
T7258 6301-6310 UBERON:0000922 denotes embryonic
T7259 6386-6393 UBERON:0000922 denotes embryos
T7260 6408-6414 PR:000005402 denotes Chaf1a
T7261 6419-6423 NCBITaxon:10088 denotes mice
T7262 6494-6501 UBERON:0000922 denotes embryos
T7263 6554-6561 UBERON:0000922 denotes embryos
T7264 6671-6682 UBERON:0000358 denotes blastocysts
T7265 6806-6815 PR:000005402 denotes p150CAF-1
T7266 6825-6832 UBERON:0000922 denotes embryos
T7267 6844-6853 PR:000005402 denotes p150CAF-1
T7268 6896-6912 UBERON:0007236 denotes eight-cell stage
T7269 6997-7003 UBERON:0000922 denotes embryo
T7270 7014-7029 UBERON:0007233 denotes four-cell stage
T7271 7050-7059 PR:000005402 denotes p150CAF-1
T7272 7119-7133 GO:0051301 denotes cell divisions
T7273 9755-9762 GO:0005634 denotes nuclear
T7274 9779-9794 GO:0000792 denotes heterochromatin
T7275 9820-9826 GO:0005634 denotes nuclei
T7276 9830-9836 PR:000005402 denotes Chaf1a
T7277 9841-9848 UBERON:0000922 denotes embryos
T7278 9850-9877 GO:0005721 denotes Pericentric heterochromatin
T7279 9915-9930 GO:0000792 denotes heterochromatin
T7280 9960-9970 GO:0051325 denotes interphase
T7281 9971-9977 GO:0005634 denotes nuclei
T7282 9985-9997 CHEBI:51217 denotes fluorochrome
T7283 9998-10002 CHEBI:51231 denotes DAPI
T7284 10030-10034 PR:000005086 denotes HP1α
T7285 10060-10071 UBERON:0000358 denotes blastocysts
T7286 10079-10084 NCBITaxon:10088 denotes mouse
T7287 10085-10098 CL:0002371 denotes somatic cells
T7288 10100-10127 GO:0005721 denotes pericentric heterochromatin
T7289 10175-10184 GO:0000785 denotes chromatin
T7290 10203-10216 GO:0010369 denotes chromocenters
T7291 10247-10251 CHEBI:51231 denotes DAPI
T7292 10314-10320 PR:000005402 denotes Chaf1a
T7293 10325-10332 UBERON:0000922 denotes embryos
T7294 10352-10361 GO:0000785 denotes chromatin
T7295 10421-10427 SO:0001026 denotes genome
T7296 10545-10560 GO:0000792 denotes heterochromatin
T7297 10586-10594 _FRAGMENT denotes two-cell
T7298 10610-10616 UBERON:0007232 denotes stages
T7299 10599-10609 UBERON:0000358 denotes blastocyst
T7300 10621-10635 UBERON:0007232 denotes two-cell stage
T7301 10646-10653 UBERON:0000922 denotes embryos
T7302 10655-10659 CHEBI:51231 denotes DAPI
T7303 10737-10763 GO:0005731 denotes nucleolar precursor bodies
T7304 10777-10792 GO:0000792 denotes Heterochromatin
T7305 10834-10838 CHEBI:51231 denotes DAPI
T7306 10862-10871 _FRAGMENT denotes four-cell
T7307 10895-10901 UBERON:0007233 denotes stages
T7308 10884-10894 UBERON:0000358 denotes blastocyst
T7309 10931-10935 PR:000005086 denotes HP1α
T7323 11350-11354 CHEBI:51231 denotes DAPI
T7324 11387-11394 GO:0005634 denotes nucleus
T7325 11438-11446 GO:0005730 denotes nucleoli
T7326 11458-11470 _FRAGMENT denotes periphery of
T7327 11475-11481 GO:0034399 denotes nuclei
T7328 11511-11515 PR:000005086 denotes HP1α
T7329 11556-11560 CHEBI:51231 denotes DAPI
T7330 11590-11607 GO:0034399 denotes nuclear periphery
T7331 11624-11632 GO:0005730 denotes nucleoli
T7332 11676-11691 GO:0000792 denotes heterochromatin
T7333 11695-11701 PR:000005402 denotes Chaf1a
T7334 11706-11713 UBERON:0000922 denotes embryos
T7335 11736-11751 GO:0000792 denotes heterochromatin
T7336 11774-11778 _FRAGMENT denotes two-
T7337 11787-11797 UBERON:0007232 denotes cell stage
T7338 11782-11797 UBERON:0007233 denotes four-cell stage
T7339 11808-11815 UBERON:0000922 denotes embryos
T7340 11879-11888 PR:000005402 denotes p150CAF-1
T7341 11900-11912 GO:0007566 denotes implantation
T7342 12002-12024 _FRAGMENT denotes heterochromatin within
T7343 12040-12046 GO:0005720 denotes nuclei
T7344 12025-12034 UBERON:0000922 denotes embryonic
T7345 12025-12039 CL:0002321 denotes embryonic cell
T7346 12035-12046 GO:0005634 denotes cell nuclei
T7347 12100-12105 GO:0033186 denotes CAF-1
T7348 12132-12140 CL:0002322 denotes ES cells
T7349 12169-12179 UBERON:0000358 denotes blastocyst
T7350 12180-12195 UBERON:0000087 denotes inner cell mass
T7351 12246-12252 PR:000005402 denotes Chaf1a
T7352 12257-12264 UBERON:0000922 denotes embryos
T7353 12317-12324 UBERON:0000922 denotes embryos
T7354 12346-12350 GO:0016246 denotes RNAi
T7355 12373-12382 PR:000005402 denotes p150CAF-1
T7356 12396-12404 CL:0002322 denotes ES cells
T7357 12466-12475 PR:000005402 denotes p150CAF-1
T7358 12476-12480 GO:0016246 denotes RNAi
T7359 12490-12498 CL:0002322 denotes ES cells
T7360 12550-12556 PR:000005402 denotes Chaf1a
T7361 12564-12568 NCBITaxon:10088 denotes mice
T7362 12570-12574 CHEBI:51231 denotes DAPI
T7363 12621-12625 PR:000005086 denotes HP1α
T7364 12630-12634 CHEBI:51231 denotes DAPI
T7365 12655-12663 GO:0005730 denotes nucleoli
T7366 12675-12687 _FRAGMENT denotes periphery of
T7367 12692-12699 GO:0034399 denotes nucleus
T7368 12740-12749 PR:000005402 denotes p150CAF-1
T7369 12767-12774 GO:0005634 denotes nuclear
T7370 12791-12806 GO:0000792 denotes heterochromatin
T7371 12810-12818 CL:0002322 denotes ES cells
T7372 12849-12861 GO:0007566 denotes implantation
T7373 12862-12869 UBERON:0000922 denotes embryos
T7374 12930-12945 GO:0000792 denotes heterochromatin
T7375 12970-12975 NCBITaxon:10088 denotes mouse
T7376 12976-12985 UBERON:0000922 denotes embryonic
T7377 12986-12997 CL:0000057 denotes fibroblasts
T7378 13015-13024 PR:000005402 denotes p150CAF-1
T7379 13038-13042 GO:0016246 denotes RNAi
T7380 13044-13053 PR:000005402 denotes p150CAF-1
T7381 13107-13125 GO:0008283 denotes cell proliferation
T7382 13182-13197 GO:0000792 denotes heterochromatin
T7383 13238-13247 PR:000005402 denotes p150CAF-1
T7384 13286-13301 GO:0000792 denotes heterochromatin
T7385 13371-13376 GO:0033186 denotes CAF-1
T7386 13384-13396 UBERON:0019248 denotes early embryo
T7387 13401-13409 CL:0002322 denotes ES cells
T7388 14716-14725 PR:000005402 denotes p150CAF-1
T7389 14729-14737 CL:0002322 denotes ES cells
T7390 14763-14778 GO:0000792 denotes heterochromatin
T7391 14779-14786 GO:0005634 denotes nuclear
T7392 14855-14862 GO:0005634 denotes nuclear
T7393 14913-14921 GO:0042571 denotes antibody
T7394 14934-14947 CL:0000836 denotes promyelocytic
T7395 14934-14956 PR:000026474 denotes promyelocytic leukemia
T7396 14958-14961 PR:000026474 denotes PML
T7397 14996-14999 PR:000026474 denotes PML
T7398 14996-15014 GO:0016605 denotes PML nuclear bodies
T7399 15048-15055 GO:0005634 denotes nuclear
T7400 15154-15157 PR:000026474 denotes PML
T7401 15154-15172 GO:0016605 denotes PML nuclear bodies
T7402 15193-15202 PR:000005402 denotes p150CAF-1
T7403 15212-15220 CL:0002322 denotes ES cells
T7404 15255-15262 GO:0005634 denotes nuclear
T7405 15310-15315 GO:0033186 denotes CAF-1
T7406 15383-15388 GO:0033186 denotes CAF-1
T7407 15435-15444 GO:0000785 denotes chromatin
T7408 15476-15483 CHEBI:15358 denotes histone
T7409 15476-15486 PR:000027594 denotes histone H3
T7410 15491-15495 PR:000005086 denotes HP1α
T7411 15515-15520 GO:0033186 denotes CAF-1
T7412 15549-15562 UBERON:0019248 denotes early embryos
T7413 15570-15578 CL:0002322 denotes ES cells
T7414 15614-15629 GO:0000792 denotes heterochromatin
T7415 15633-15640 GO:0005634 denotes nuclear
T7416 15684-15693 NCBITaxon:40674 denotes mammalian
T7417 15717-15722 GO:0033186 denotes CAF-1
T7418 15748-15755 GO:0051320 denotes S phase
T7419 15808-15820 GO:0009294 denotes transfection
T7420 15828-15832 GO:0016246 denotes RNAi
T7421 15833-15839 SO:0000440 denotes vector
T7422 15841-15850 PR:000005402 denotes p150CAF-1
T7423 15903-15908 GO:0033186 denotes CAF-1
T7424 15944-15955 GO:0006260 denotes replication
T7425 16010-16027 CHEBI:472552 denotes bromodeoxyuridine
T7426 16029-16033 CHEBI:472552 denotes BrdU
T7427 16052-16056 PR:000012421 denotes PCNA
T7428 16058-16071 GO:0008283 denotes proliferating
T7429 16058-16092 PR:000012421 denotes proliferating cell nuclear antigen
T7430 16085-16092 CHEBI:59132 denotes antigen
T7431 16179-16194 GO:0006260 denotes DNA replication
T7432 16235-16250 GO:0000792 denotes heterochromatin
T7433 16286-16294 CL:0002322 denotes ES cells
T7434 16304-16315 GO:0008283 denotes proliferate
T7435 16320-16323 GO:0016265 denotes die
T7436 16340-16349 PR:000005402 denotes p150CAF-1
T7437 16379-16395 GO:0009987 denotes cellular process
T7438 16403-16410 UBERON:0000922 denotes embryos
T7439 16458-16467 PR:000005402 denotes p150CAF-1
T7440 16480-16488 CL:0002322 denotes ES cells
T7441 16493-16506 UBERON:0019248 denotes early embryos
T7442 16540-16558 _FRAGMENT denotes heterochromatin in
T7443 16563-16570 GO:0005720 denotes nucleus
T7444 16598-16608 GO:0007049 denotes cell cycle
T7445 17892-17907 GO:0000792 denotes heterochromatin
T7446 17970-17983 GO:0097617 denotes hybridization
T7447 18095-18100 NCBITaxon:10088 denotes mouse
T7448 18317-18321 CHEBI:51231 denotes DAPI
T7449 18340-18350 GO:0051325 denotes interphase
T7450 18351-18358 GO:0005634 denotes nucleus
T7451 18474-18483 PR:000005402 denotes p150CAF-1
T7452 18484-18488 GO:0016246 denotes RNAi
T7453 18533-18560 GO:0005721 denotes pericentric heterochromatin
T7454 18611-18615 CHEBI:51231 denotes DAPI
T7455 18874-18891 GO:0034399 denotes nuclear periphery
T7456 18914-18918 CHEBI:51231 denotes DAPI
T7457 18954-18963 PR:000005402 denotes p150CAF-1
T7458 19052-19059 GO:0005634 denotes nucleus
T7459 19128-19132 CHEBI:51231 denotes DAPI
T7460 19153-19166 GO:0097617 denotes hybridization
T7461 19178-19187 PR:000005402 denotes p150CAF-1
T7462 19252-19279 GO:0005721 denotes pericentric heterochromatin
T7463 19416-19425 PR:000005402 denotes p150CAF-1
T7464 19495-19504 PR:000005402 denotes p150CAF-1
T7465 19563-19590 GO:0005721 denotes pericentric heterochromatin
T7466 21346-21351 GO:0033186 denotes CAF-1
T7467 21373-21380 CHEBI:15358 denotes histone
T7468 21373-21380 _FRAGMENT denotes histone
T7469 21390-21392 PR:000008603 denotes H4
T7470 21409-21422 GO:0071897 denotes DNA synthesis
T7471 21480-21489 GO:0000785 denotes chromatin
T7472 21529-21540 GO:0000786 denotes nucleosomal
T7473 21678-21687 PR:000005402 denotes p150CAF-1
T7474 21697-21705 CL:0002322 denotes ES cells
T7475 21727-21733 SO:0001026 denotes genome
T7476 21734-21743 GO:0000785 denotes chromatin
T7477 21848-21855 CHEBI:15358 denotes histone
T7478 21848-21858 PR:000027594 denotes histone H3
T7479 21864-21883 GO:0000790 denotes chromatin in nuclei
T7480 21904-21915 GO:0009294 denotes transfected
T7481 21933-21942 PR:000005402 denotes p150CAF-1
T7482 21943-21947 GO:0016246 denotes RNAi
T7483 21948-21963 SO:0000755 denotes plasmid vectors
T7484 21965-21971 GO:0005634 denotes Nuclei
T7485 22013-22017 CHEBI:24866 denotes salt
T7486 22053-22057 CHEBI:26710 denotes NaCl
T7487 22065-22069 CHEBI:26710 denotes NaCl
T7488 22104-22111 CHEBI:15358 denotes histone
T7489 22104-22114 PR:000027594 denotes histone H3
T7490 22141-22150 GO:0000785 denotes chromatin
T7491 22188-22197 PR:000005402 denotes p150CAF-1
T7492 22207-22215 CL:0002322 denotes ES cells
T7493 22292-22319 GO:0005721 denotes pericentric heterochromatin
T7494 22376-22387 GO:0000786 denotes nucleosomal
T7495 22970-22977 GO:0005634 denotes nuclear
T7496 22994-22998 PR:000005086 denotes HP1α
T7497 23022-23028 PR:000005402 denotes Chaf1a
T7498 23033-23040 UBERON:0000922 denotes embryos
T7499 23045-23054 PR:000005402 denotes p150CAF-1
T7500 23064-23072 CL:0002322 denotes ES cells
T7501 23166-23193 GO:0005721 denotes pericentric heterochromatin
T7502 23211-23230 GO:0010424 denotes DNA CpG methylation
T7503 23319-23328 PR:000005402 denotes p150CAF-1
T7504 23368-23375 CL:0002322 denotes ES cell
T7505 23401-23405 GO:0016246 denotes RNAi
T7506 23446-23461 GO:0006306 denotes DNA methylation
T7507 23618-23633 GO:0000792 denotes heterochromatin
T7508 23645-23654 PR:000005402 denotes p150CAF-1
T7509 23664-23672 CL:0002322 denotes ES cells
T7510 23688-23692 GO:0016246 denotes RNAi
T7511 23693-23707 SO:0000755 denotes plasmid vector
T7512 23716-23723 CL:0002322 denotes ES cell
T7513 23757-23766 PR:000005402 denotes p150CAF-1
T7514 23790-23805 GO:0000792 denotes heterochromatin
T7515 23850-23865 GO:0006306 denotes DNA methylation
T7516 23935-23942 PR:000043452 denotes histone
T7517 23935-23942 CHEBI:15358 denotes histone
T7518 23935-23956 GO:0016570 denotes histone modifications
T7519 23965-23974 GO:0000785 denotes chromatin
T7520 24027-24036 GO:0000785 denotes chromatin
T7521 24149-24159 GO:0042571 denotes antibodies
T7522 24170-24179 PR:000005402 denotes p150CAF-1
T7523 24332-24341 PR:000005402 denotes p150CAF-1
T7524 24378-24405 GO:0005721 denotes pericentric heterochromatin
T7525 24649-24658 PR:000005402 denotes p150CAF-1
T7526 24703-24730 GO:0005721 denotes pericentric heterochromatin
T7527 24771-24778 SO:0001707 denotes H3K9me3
T7528 24823-24832 PR:000005402 denotes p150CAF-1
T7529 26696-26703 SO:0001707 denotes H3K9me3
T7530 26740-26744 CHEBI:51231 denotes DAPI
T7531 26807-26814 SO:0001707 denotes H3K9me3
T7532 26841-26850 PR:000005402 denotes p150CAF-1
T7533 26907-26911 PR:000005086 denotes HP1α
T7534 27198-27202 CHEBI:51231 denotes DAPI
T7535 27266-27271 GO:0033186 denotes CAF-1
T7536 27275-27283 CL:0002322 denotes ES cells
T7537 27322-27337 GO:0000792 denotes heterochromatin
T12672 27439-27448 PR:000005402 denotes p150CAF-1
T12673 27479-27484 NCBITaxon:10088 denotes mouse
T12674 27491-27504 GO:0009790 denotes embryogenesis
T12675 27512-27520 CL:0002322 denotes ES cells
T12676 27551-27556 GO:0033186 denotes CAF-1
T12677 27593-27608 GO:0006260 denotes DNA replication
T12678 27612-27623 NCBITaxon:7742 denotes vertebrates
T12679 27628-27642 NCBITaxon:8355 denotes Xenopus laevis
T12680 27644-27653 PR:000005402 denotes p150CAF-1
T12681 27689-27703 GO:0051301 denotes cell divisions
T12682 27757-27762 GO:0033186 denotes CAF-1
T12683 27779-27788 NCBITaxon:40674 denotes mammalian
T12684 27823-27838 GO:0006260 denotes DNA replication
T12685 27885-27890 GO:0033186 denotes CAF-1
T12686 27898-27905 GO:0005634 denotes nuclear
T12687 27922-27937 GO:0000792 denotes heterochromatin
T12688 27978-27986 CL:0002322 denotes ES cells
T12689 28004-28013 PR:000005402 denotes p150CAF-1
T12690 28023-28031 CL:0002322 denotes ES cells
T12691 28039-28054 GO:0006260 denotes DNA replication
T12692 28110-28121 GO:0000786 denotes nucleosomal
T12693 28143-28158 GO:0000792 denotes heterochromatin
T12694 28205-28214 PR:000005402 denotes p150CAF-1
T12695 28230-28233 PR:000026474 denotes PML
T12696 28230-28240 GO:0016605 denotes PML bodies
T12697 28244-28251 CL:0002322 denotes ES cell
T12698 28247-28258 GO:0005634 denotes cell nuclei
T12699 28273-28280 GO:0005634 denotes nuclear
T12700 28332-28341 PR:000005402 denotes p150CAF-1
T12701 28377-28384 CL:0002322 denotes ES cell
T12702 28380-28393 GO:0051301 denotes cell division
T12703 28398-28408 GO:0008219 denotes cell death
T12704 28446-28461 GO:0000792 denotes heterochromatin
T12705 28561-28568 UBERON:0000922 denotes embryos
T12706 28573-28578 GO:0016265 denotes death
T12707 28582-28590 CL:0002322 denotes ES cells
T12708 28604-28609 GO:0033186 denotes CAF-1
T12709 28617-28624 GO:0005634 denotes nuclear
T12710 28641-28656 GO:0000792 denotes heterochromatin
T12711 28768-28773 GO:0033186 denotes CAF-1
T12712 28822-28827 NCBITaxon:9606 denotes human
T12713 28874-28885 _FRAGMENT denotes pluripotent
T12714 28896-28901 CL:0002248 denotes cells
T12715 28886-28895 UBERON:0000922 denotes embryonic
T12716 28886-28901 CL:0002321 denotes embryonic cells
T12717 28918-28931 UBERON:0019248 denotes early embryos
T12718 28936-28944 CL:0002322 denotes ES cells
T12719 28952-28958 SO:0001026 denotes genome
T12720 28980-28993 CL:0002371 denotes somatic cells
T12721 29071-29076 GO:0033186 denotes CAF-1
T12722 29080-29095 GO:0000792 denotes heterochromatin
T12723 29128-29136 CL:0002322 denotes ES cells
T12724 29158-29167 GO:0000785 denotes chromatin
T12725 29225-29234 GO:0000785 denotes chromatin
T12726 29297-29312 GO:0000792 denotes heterochromatin
T12727 29313-29320 GO:0005634 denotes nuclear
T12728 29344-29349 GO:0033186 denotes CAF-1
T12729 29449-29455 SO:0001026 denotes genome
T12730 29498-29506 CL:0002322 denotes ES cells
T12731 29539-29544 GO:0033186 denotes CAF-1
T12732 29583-29588 GO:0033186 denotes CAF-1
T12733 29592-29603 _FRAGMENT denotes pluripotent
T12734 29614-29619 CL:0002248 denotes cells
T12735 29604-29613 UBERON:0000922 denotes embryonic
T12736 29604-29619 CL:0002321 denotes embryonic cells
T12737 29678-29698 NCBITaxon:3702 denotes Arabidopsis thaliana
T12738 29709-29714 GO:0033186 denotes CAF-1
T12739 29760-29765 GO:0033186 denotes CAF-1
T12740 29806-29818 GO:0010369 denotes chromocenter
T12741 29879-29884 GO:0033186 denotes CAF-1
T12742 29905-29920 GO:0000792 denotes heterochromatin
T12743 29937-29942 _FRAGMENT denotes early
T12744 29949-29956 UBERON:0019248 denotes embryos
T12745 29943-29948 NCBITaxon:10088 denotes mouse
T12746 29961-29966 NCBITaxon:10088 denotes mouse
T12747 29967-29975 CL:0002322 denotes ES cells
T12748 29990-29995 GO:0033186 denotes CAF-1
T12749 30142-30147 NCBITaxon:10088 denotes mouse
T12750 30148-30154 SO:0001026 denotes genome
T12751 30187-30194 GO:0005634 denotes nuclear
T12752 30234-30261 GO:0005721 denotes pericentric heterochromatin
T12753 30277-30285 CL:0002322 denotes ES cells
T12754 30322-30337 GO:0000792 denotes heterochromatin
T12755 30406-30411 GO:0033186 denotes CAF-1
T12756 30442-30447 GO:0033186 denotes CAF-1
T12757 30455-30462 NCBITaxon:species denotes species
T12758 30537-30544 CHEBI:15358 denotes histone
T12759 30537-30547 PR:000027594 denotes histone H3
T12760 30577-30587 NCBITaxon:2759 denotes eukaryotes
T12761 30589-30594 GO:0033186 denotes CAF-1
T12762 30611-30618 NCBITaxon:40674 denotes mammals
T12763 30638-30662 NCBITaxon:4932 denotes Saccharomyces cerevisiae
T12764 30688-30695 GO:0007114 denotes budding
T12765 30688-30701 NCBITaxon:4892 denotes budding yeast
T12766 30702-30708 SO:0001026 denotes genome
T12767 30726-30741 GO:0000792 denotes heterochromatin
T12768 30780-30790 NCBITaxon:2759 denotes eukaryotes
T12769 30825-30840 GO:0000792 denotes heterochromatin
T12770 30849-30852 _FRAGMENT denotes di-
T12771 30860-30879 GO:0036123 denotes methylation at H3K9
T12772 30860-30874 _FRAGMENT denotes methylation at
T12773 30892-30897 GO:0034772 denotes H4K20
T12774 30857-30879 GO:0036124 denotes trimethylation at H3K9
T12775 30857-30874 _FRAGMENT denotes trimethylation at
T12776 30881-30886 GO:0070734 denotes H3K27
T12777 30892-30897 GO:0034773 denotes H4K20
T12778 30922-30938 GO:0035328 denotes silent chromatin
T12779 30942-30955 NCBITaxon:4932 denotes S. cerevisiae
T12780 30960-30967 NCBITaxon:40674 denotes mammals
T12781 30969-30987 GO:0036123 denotes H3K9 dimethylation
T12782 31040-31044 PR:000008425 denotes H3.3
T12783 31105-31114 GO:0000785 denotes chromatin
T12784 31156-31158 PR:000027594 denotes H3
T12785 31168-31181 NCBITaxon:4932 denotes S. cerevisiae
T12786 31197-31201 PR:000008425 denotes H3.3
T12787 31212-31221 GO:0010467 denotes expressed
T12788 31244-31253 GO:0000785 denotes chromatin
T12789 31259-31270 GO:0006260 denotes replication
T12790 31301-31311 NCBITaxon:2759 denotes eukaryotes
T12791 31365-31380 GO:0000792 denotes heterochromatin
T12792 31408-31413 GO:0033186 denotes CAF-1
T12793 31431-31442 GO:0006260 denotes replication
T12794 31461-31468 GO:0032991 denotes complex
T12795 31508-31515 GO:0005634 denotes nuclear
T12796 31532-31559 GO:0005721 denotes pericentric heterochromatin
T12797 31563-31570 UBERON:0000922 denotes embryos
T12798 31575-31583 CL:0002322 denotes ES cells
T12799 31657-31666 GO:0000785 denotes chromatin
T12800 31694-31701 GO:0005634 denotes nuclear
T12801 31731-31746 GO:0000792 denotes heterochromatin
T12802 31753-31762 UBERON:0000922 denotes embryonic
T12803 31916-31931 GO:0000792 denotes heterochromatin
T12804 31943-31952 PR:000005402 denotes p150CAF-1
T12805 31958-31965 UBERON:0000922 denotes embryos
T12806 31970-31978 CL:0002322 denotes ES cells
T12807 31980-31985 GO:0033186 denotes CAF-1
T12808 32026-32041 GO:0000792 denotes heterochromatin
T12809 32152-32167 GO:0006260 denotes DNA replication
T12810 32186-32195 PR:000005402 denotes p150CAF-1
T12811 32197-32212 GO:0000792 denotes heterochromatin
T12812 32243-32251 CHEBI:36357 denotes molecule
T12813 32374-32379 GO:0033186 denotes CAF-1
T12814 32445-32460 GO:0000792 denotes heterochromatin
T12815 32468-32480 GO:0007566 denotes implantation
T12816 32481-32488 UBERON:0000922 denotes embryos
T12817 32521-32528 GO:0005634 denotes nuclear
T12818 32554-32562 _FRAGMENT denotes two-cell
T12819 32578-32584 UBERON:0007232 denotes stages
T12820 32567-32577 UBERON:0000358 denotes blastocyst
T12821 32609-32614 NCBITaxon:10088 denotes mouse
T12822 32633-32640 GO:0005634 denotes nuclear
T12823 32657-32675 _FRAGMENT denotes heterochromatin in
T12824 32684-32690 GO:0005720 denotes nuclei
T12825 32676-32683 CL:0002322 denotes ES cell
T12826 32679-32690 GO:0005634 denotes cell nuclei
T12827 32721-32735 UBERON:0000106 denotes one-cell stage
T12828 32756-32763 GO:0005634 denotes nuclear
T12829 32800-32815 GO:0000792 denotes heterochromatin
T12830 32843-32850 GO:0005634 denotes nuclear
T12831 32875-32890 UBERON:0019248 denotes early embryonic
T12832 32908-32915 UBERON:0000922 denotes embryos
T12833 32948-32963 GO:0000792 denotes heterochromatin
T12834 33008-33017 PR:000005402 denotes p150CAF-1
T12835 33027-33035 CL:0002322 denotes ES cells
T12836 33083-33089 PR:000005402 denotes Chaf1a
T12837 33093-33100 UBERON:0000922 denotes embryos
T12838 33123-33128 GO:0033186 denotes CAF-1
T12839 33162-33177 GO:0000792 denotes heterochromatin
T12840 33208-33222 GO:0051301 denotes cell divisions
T12841 33226-33235 UBERON:0000922 denotes embryonic
T12842 33266-33273 GO:0005634 denotes nuclear
T12843 33294-33320 GO:0010468 denotes control of gene expression
T12844 33305-33309 SO:0000704 denotes gene
T12845 33357-33362 GO:0033186 denotes CAF-1
T12846 33406-33410 SO:0000704 denotes gene
T12847 33406-33421 GO:0010467 denotes gene expression
T12848 33435-33448 GO:0009790 denotes embryogenesis
T12849 33509-33518 GO:0000785 denotes chromatin
T12850 33560-33571 _FRAGMENT denotes pluripotent
T12851 33582-33587 CL:0002248 denotes cells
T12852 33572-33581 UBERON:0000922 denotes embryonic
T12853 33572-33587 CL:0002321 denotes embryonic cells
T12854 33631-33646 GO:0006306 denotes DNA methylation
T12855 33651-33658 PR:000043452 denotes histone
T12856 33651-33658 CHEBI:15358 denotes histone
T12857 33651-33668 GO:0016570 denotes histone modifying
T12858 33722-33731 GO:0000785 denotes chromatin
T12859 33722-33740 GO:0031497 denotes chromatin assembly
T12860 33791-33802 GO:0000786 denotes nucleosomes
T12861 33804-33809 GO:0033186 denotes CAF-1
T12862 33857-33872 GO:0000792 denotes heterochromatin
T12863 33884-33897 UBERON:0019248 denotes early embryos
T12864 33902-33910 CL:0002322 denotes ES cells
T14739 33936-33949 _FRAGMENT denotes Generation of
T14740 33973-33980 GO:0009790 denotes embryos
T14741 33950-33956 PR:000005402 denotes Chaf1a
T14742 33964-33968 NCBITaxon:10088 denotes mice
T14743 33973-33980 UBERON:0000922 denotes embryos
T14744 34010-34017 SO:0001026 denotes genomic
T14745 34046-34054 SO:0000357 denotes flanking
T14746 34055-34061 PR:000005402 denotes Chaf1a
T14747 34062-34066 SO:0000147 denotes exon
T14748 34138-34146 CHEBI:7507 denotes neomycin
T14749 34166-34171 CHEBI:27026 denotes toxin
T14750 34173-34182 SO:0005853 denotes cassettes
T14751 34229-34240 GO:0009294 denotes transfected
T14752 34244-34252 CL:0002322 denotes ES cells
T14753 34299-34307 CL:0002322 denotes ES cells
T14754 34328-34334 PR:000005402 denotes Chaf1a
T14755 34355-34361 PR:000005402 denotes Chaf1a
T14756 34383-34389 SO:0001023 denotes allele
T14757 34431-34437 PR:000005402 denotes Chaf1a
T14758 34442-34446 NCBITaxon:10088 denotes mice
T14759 34471-34479 CL:0002322 denotes ES cells
T14760 34494-34505 UBERON:0000358 denotes blastocysts
T14761 34510-34517 UBERON:0000922 denotes embryos
T14762 34550-34556 PR:000005402 denotes Chaf1a
T14763 34561-34565 NCBITaxon:10088 denotes mice
T14764 34610-34617 UBERON:0000922 denotes Embryos
T14765 34651-34654 CHEBI:60004 denotes mix
T14766 34682-34689 SO:0000112 denotes primers
T14767 34752-34759 SO:0001023 denotes alleles
T14768 34903-34910 SO:0000112 denotes primers
T14769 34977-34984 CHEBI:2511 denotes agarose
T14770 35040-35042 SO:0000028 denotes bp
T14771 35065-35067 SO:0000028 denotes bp
T14772 35069-35076 SO:0001023 denotes alleles
T15607 35079-35088 PR:000005402 denotes P150CAF-1
T15608 35102-35106 GO:0016246 denotes RNAi
T15609 35112-35116 GO:0016246 denotes RNAi
T15610 35117-35131 SO:0000755 denotes plasmid vector
T15611 35172-35177 NCBITaxon:10088 denotes mouse
T15612 35181-35189 SO:0000167 denotes promoter
T15613 35196-35205 CHEBI:17939 denotes puromycin
T15614 35216-35220 SO:0000704 denotes gene
T15615 35306-35312 SO:0000440 denotes vector
T15616 35332-35336 SO:0000704 denotes gene
T15617 35368-35373 SO:0000704 denotes genes
T15618 35377-35385 CL:0002322 denotes ES cells
T15619 35534-35543 PR:000005402 denotes p150CAF-1
T15620 35544-35549 SO:0000646 denotes siRNA
T15621 35551-35572 SO:0000646 denotes short interfering RNA
T15622 35607-35614 SO:0000155 denotes plasmid
T15623 35628-35634 SO:0000440 denotes vector
T15624 35635-35644 GO:0010467 denotes expressed
T15625 35647-35652 SO:0000646 denotes siRNA
T15626 35670-35685 GO:0006401 denotes RNA degradation
T15627 35687-35695 CL:0002322 denotes ES cells
T15628 35701-35712 GO:0009294 denotes transfected
T15629 35745-35759 SO:0000755 denotes plasmid vector
T15630 35773-35780 CHEBI:5291 denotes gelatin
T15631 35847-35856 CHEBI:17939 denotes Puromycin
T15632 35964-35973 PR:000005402 denotes p150CAF-1
T15633 35974-35978 GO:0016246 denotes RNAi
T15634 35979-35985 SO:0000440 denotes vector
T15635 36035-36040 GO:0033186 denotes CAF-1
T15636 36131-36140 PR:000005402 denotes p150CAF-1
T15637 36141-36151 GO:0010467 denotes expression
T15638 36218-36222 SO:0000704 denotes gene
T15639 36262-36273 GO:0009294 denotes transfected
T15640 36294-36298 GO:0016246 denotes RNAi
T15641 36299-36313 SO:0000755 denotes plasmid vector
T15642 36519-36528 CHEBI:17939 denotes puromycin
T16153 36548-36556 CL:0002322 denotes ES cells
T16154 36598-36602 SO:0000704 denotes gene
T16155 36619-36627 CL:0002322 denotes ES cells
T16156 36645-36649 GO:0016246 denotes RNAi
T16157 36758-36766 CL:0002322 denotes ES cells
T16158 36841-36848 UBERON:0000922 denotes embryos
T16554 37020-37027 UBERON:0000922 denotes embryos
T16555 37067-37071 CHEBI:37527 denotes acid
T16556 37086-37100 UBERON:0000086 denotes zona pellucida
T16557 37186-37194 CL:0002322 denotes ES cells
T16558 37196-37206 GO:0042571 denotes Antibodies
T16559 37212-37216 PR:000005086 denotes HP1α
T16560 37301-37305 CHEBI:472552 denotes BrdU
T16561 37348-37352 PR:000012421 denotes PCNA
T16562 37380-37383 PR:000026474 denotes PML
T16563 37480-37490 GO:0042571 denotes Antibodies
T16564 37496-37501 NCBITaxon:10088 denotes mouse
T16565 37502-37510 PR:000005402 denotes p150CAF1
T16566 37525-37532 SO:0001707 denotes H3K9me3
T16567 37615-37625 GO:0042571 denotes antibodies
T16904 37738-37743 GO:0019835 denotes lysed
T16905 37783-37786 CHEBI:8984 denotes SDS
T16906 37814-37824 GO:0042571 denotes antibodies
T16907 37833-37842 PR:000005402 denotes p150CAF-1
T16908 37867-37871 PR:000005086 denotes HP1α
T16909 37897-37904 CHEBI:15358 denotes Histone
T16910 37897-37907 PR:000027594 denotes Histone H3
T16911 37924-37931 SO:0001707 denotes H3K9me3
T16912 37953-37960 PR:000003676 denotes β-actin
T17159 38032-38038 CHEBI:15956 denotes Biotin
T17160 38050-38061 CHEBI:42098 denotes Digoxigenin
T17161 38136-38147 GO:0006412 denotes translation
T17840 38389-38395 GO:0005634 denotes Nuclei
T17841 38457-38466 GO:0000785 denotes chromatin
T17842 38468-38476 CL:0002322 denotes ES cells
T17843 38529-38533 CHEBI:9754 denotes Tris
T17844 38534-38537 CHEBI:17883 denotes HCl
T17845 38554-38561 CHEBI:17992 denotes sucrose
T17846 38569-38572 CHEBI:32588 denotes KCl
T17847 38580-38584 CHEBI:26710 denotes NaCl
T17848 38591-38596 CHEBI:6636 denotes MgCl2
T17849 38674-38680 GO:0005634 denotes Nuclei
T17850 38749-38756 CHEBI:17992 denotes sucrose
T17851 38787-38794 CHEBI:17992 denotes sucrose
T17852 38838-38842 CHEBI:9754 denotes Tris
T17853 38843-38846 CHEBI:17883 denotes HCl
T17854 38863-38867 CHEBI:26710 denotes NaCl
T17855 38876-38883 CHEBI:17992 denotes sucrose
T17856 38890-38895 CHEBI:6636 denotes MgCl2
T17857 38902-38907 CHEBI:3312 denotes CaCl2
T17858 38922-38928 GO:0005634 denotes nuclei
T17859 39127-39130 CHEBI:8984 denotes SDS
T17860 39213-39219 CHEBI:15882 denotes phenol
T17861 39220-39230 CHEBI:35255 denotes chloroform
T17862 39246-39257 CHEBI:17824 denotes isopropanol
T17863 39300-39307 CHEBI:15358 denotes histone
T17864 39300-39310 PR:000027594 denotes histone H3
T17865 39316-39325 GO:0000785 denotes chromatin
T17866 39341-39345 PR:000005402 denotes p150
T17867 39371-39377 GO:0005634 denotes nuclei
T17868 39430-39435 CHEBI:46756 denotes Hepes
T17869 39449-39457 CHEBI:17754 denotes Glycerol
T17870 39464-39469 CHEBI:6636 denotes MgCl2
T17871 39491-39494 CHEBI:18320 denotes DTT
T17872 39503-39507 CHEBI:8102 denotes PMSF
T17873 39570-39574 CHEBI:26710 denotes NaCl
T17874 39671-39678 CHEBI:15358 denotes histone
T17875 39671-39681 PR:000027594 denotes histone H3
T17876 39682-39690 GO:0042571 denotes antibody
T18595 39726-39735 GO:0000785 denotes chromatin
T18596 39760-39771 GO:0000786 denotes nucleosomes
T18597 39809-39818 GO:0000785 denotes chromatin
T18598 39869-39879 GO:0042571 denotes antibodies
T18599 39992-39999 CHEBI:2511 denotes agarose
T18600 40036-40049 GO:0097617 denotes Hybridization
T18601 40151-40161 GO:0042571 denotes Antibodies
T18602 40211-40221 GO:0042571 denotes Antibodies
T18603 40226-40233 SO:0001707 denotes H3K9me3
T18604 40359-40361 SO:0000028 denotes bp
T18605 40368-40373 PR:P23940 denotes BamHI
T18606 40435-40437 SO:0000028 denotes bp
T18607 40444-40451 PR:P43870 denotes HindIII
T18608 40513-40515 SO:0000028 denotes bp
R321 T2143 T2142 _lexicallyChainedTo cells,embryonic stem
R322 T2143 T2144 _lexicallyChainedTo cells,ES
R323 T2153 T2152 _lexicallyChainedTo embryos,early
R324 T2159 T2158 _lexicallyChainedTo cells,pluripotent
R782 T7443 T7442 _lexicallyChainedTo nucleus,heterochromatin in
R783 T7298 T7297 _lexicallyChainedTo stages,two-cell
R784 T7307 T7306 _lexicallyChainedTo stages,four-cell
R785 T7316 T7315 _lexicallyChainedTo stages,two-cell
R786 T7321 T7320 _lexicallyChainedTo cell stage,eight-
R787 T7327 T7326 _lexicallyChainedTo nuclei,periphery of
R788 T7337 T7336 _lexicallyChainedTo cell stage,two-
R789 T7343 T7342 _lexicallyChainedTo nuclei,heterochromatin within
R790 T7469 T7468 _lexicallyChainedTo H4,histone
R791 T7367 T7366 _lexicallyChainedTo nucleus,periphery of
R3058 T12714 T12713 _lexicallyChainedTo cells,pluripotent
R3059 T12734 T12733 _lexicallyChainedTo cells,pluripotent
R3060 T12744 T12743 _lexicallyChainedTo embryos,early
R3061 T12771 T12770 _lexicallyChainedTo methylation at H3K9,di-
R3062 T12772 T12770 _lexicallyChainedTo methylation at,di-
R3063 T12773 T12772 _lexicallyChainedTo H4K20,methylation at
R3064 T12776 T12775 _lexicallyChainedTo H3K27,trimethylation at
R3065 T12777 T12775 _lexicallyChainedTo H4K20,trimethylation at
R3066 T12819 T12818 _lexicallyChainedTo stages,two-cell
R3067 T12824 T12823 _lexicallyChainedTo nuclei,heterochromatin in
R3068 T12851 T12850 _lexicallyChainedTo cells,pluripotent
R4193 T14740 T14739 _lexicallyChainedTo embryos,Generation of
R320 T2100 T2099 _lexicallyChainedTo H4,histone
R1 T648 T647 _lexicallyChainedTo Cells,Pluripotent
R2 T671 T670 _lexicallyChainedTo stages,two-cell
R3 T678 T677 _lexicallyChainedTo cell stage,two-
R4 T702 T701 _lexicallyChainedTo cells,pluripotent