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PMC:1626108 / 18743-19436 JSONTXT

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Id Subject Object Predicate Lexical cue
T12543 0-1 -LRB- denotes (
T12544 1-2 LS denotes A
T12545 4-11 NN denotes Diagram
T12546 2-3 -RRB- denotes )
T12547 12-14 IN denotes of
T12548 15-18 DT denotes the
T12549 27-33 NN denotes region
T12550 19-26 JJ denotes genomic
T12551 34-36 IN denotes of
T12552 37-43 NN denotes RanBP2
T12553 44-53 VBN denotes disrupted
T12554 54-56 IN denotes by
T12555 57-66 NN denotes insertion
T12556 67-71 NN denotes trap
T12557 72-83 NN denotes mutagenesis
T12558 84-88 IN denotes with
T12559 89-90 DT denotes a
T12560 112-118 NN denotes vector
T12561 91-102 JJ denotes bicistronic
T12562 103-111 NN denotes reporter
T12563 119-126 IN denotes between
T12564 127-131 NN denotes exon
T12565 132-133 CD denotes 1
T12566 134-137 CC denotes and
T12567 138-139 CD denotes 2
T12568 139-140 . denotes .
T12569 140-217 sentence denotes The bicistronic transcript produces two proteins under regulation of RanBP2.
T12570 141-144 DT denotes The
T12571 157-167 NN denotes transcript
T12572 145-156 JJ denotes bicistronic
T12573 168-176 VBZ denotes produces
T12574 177-180 CD denotes two
T12575 181-189 NN denotes proteins
T12576 190-195 IN denotes under
T12577 196-206 NN denotes regulation
T12578 207-209 IN denotes of
T12579 210-216 NN denotes RanBP2
T12580 216-217 . denotes .
T12581 217-450 sentence denotes Upon splicing of RanBP2, a fusion between exon 1 and β-geo (a fusion between the β-gal and neo genes) is generated, while human placental alkaline phophatase (PLAP) is independently translated using the internal ribosome entry site.
T12582 218-222 IN denotes Upon
T12583 323-332 VBN denotes generated
T12584 223-231 NN denotes splicing
T12585 232-234 IN denotes of
T12586 235-241 NN denotes RanBP2
T12587 241-243 , denotes ,
T12588 243-244 DT denotes a
T12589 245-251 NN denotes fusion
T12590 252-259 IN denotes between
T12591 260-264 NN denotes exon
T12592 265-266 CD denotes 1
T12593 267-270 CC denotes and
T12594 271-272 NN denotes β
T12595 273-276 NN denotes geo
T12596 272-273 HYPH denotes -
T12597 277-278 -LRB- denotes (
T12598 278-279 DT denotes a
T12599 280-286 NN denotes fusion
T12600 287-294 IN denotes between
T12601 295-298 DT denotes the
T12602 313-318 NNS denotes genes
T12603 299-300 NN denotes β
T12604 301-304 NN denotes gal
T12605 300-301 HYPH denotes -
T12606 305-308 CC denotes and
T12607 309-312 NN denotes neo
T12608 318-319 -RRB- denotes )
T12609 320-322 VBZ denotes is
T12610 332-334 , denotes ,
T12611 334-339 IN denotes while
T12612 400-410 VBN denotes translated
T12613 340-345 JJ denotes human
T12614 365-375 NN denotes phophatase
T12615 346-355 JJ denotes placental
T12616 356-364 NN denotes alkaline
T12617 376-377 -LRB- denotes (
T12618 377-381 NN denotes PLAP
T12619 381-382 -RRB- denotes )
T12620 383-385 VBZ denotes is
T12621 386-399 RB denotes independently
T12622 411-416 VBG denotes using
T12623 417-420 DT denotes the
T12624 445-449 NN denotes site
T12625 421-429 JJ denotes internal
T12626 439-444 NN denotes entry
T12627 430-438 NN denotes ribosome
T12628 449-450 . denotes .
T12629 450-617 sentence denotes Consistent with previous studies, the expression of the former is directed to cell bodies, while expression of the latter is targeted to the axonal processes [67,68].
T12630 451-461 JJ denotes Consistent
T12631 517-525 VBN denotes directed
T12632 462-466 IN denotes with
T12633 467-475 JJ denotes previous
T12634 476-483 NNS denotes studies
T12635 483-485 , denotes ,
T12636 485-488 DT denotes the
T12637 489-499 NN denotes expression
T12638 500-502 IN denotes of
T12639 503-506 DT denotes the
T12640 507-513 JJ denotes former
T12641 514-516 VBZ denotes is
T12642 526-528 IN denotes to
T12643 529-533 NN denotes cell
T12644 534-540 NNS denotes bodies
T12645 540-542 , denotes ,
T12646 542-547 IN denotes while
T12647 576-584 VBN denotes targeted
T12648 548-558 NN denotes expression
T12649 559-561 IN denotes of
T12650 562-565 DT denotes the
T12651 566-572 JJ denotes latter
T12652 573-575 VBZ denotes is
T12653 585-587 IN denotes to
T12654 588-591 DT denotes the
T12655 599-608 NNS denotes processes
T12656 592-598 JJ denotes axonal
T12657 609-610 -LRB- denotes [
T12658 613-615 CD denotes 68
T12659 610-612 CD denotes 67
T12660 612-613 , denotes ,
T12661 615-616 -RRB- denotes ]
T12662 616-617 . denotes .
T12663 617-693 sentence denotes Transcriptional 5′ RACE analysis detects a fusion between exon 1 and β-geo.
T12664 618-633 JJ denotes Transcriptional
T12665 642-650 NN denotes analysis
T12666 634-635 CD denotes 5
T12667 635-636 SYM denotes ′
T12668 637-641 NN denotes RACE
T12669 651-658 VBZ denotes detects
T12670 659-660 DT denotes a
T12671 661-667 NN denotes fusion
T12672 668-675 IN denotes between
T12673 676-680 NN denotes exon
T12674 681-682 CD denotes 1
T12675 683-686 CC denotes and
T12676 687-688 NN denotes β
T12677 689-692 NN denotes geo
T12678 688-689 HYPH denotes -
T12679 692-693 . denotes .
R8257 T12543 T12544 punct (,A
R8258 T12544 T12545 meta A,Diagram
R8259 T12546 T12544 punct ),A
R8260 T12547 T12545 prep of,Diagram
R8261 T12548 T12549 det the,region
R8262 T12549 T12547 pobj region,of
R8263 T12550 T12549 amod genomic,region
R8264 T12551 T12549 prep of,region
R8265 T12552 T12551 pobj RanBP2,of
R8266 T12553 T12549 acl disrupted,region
R8267 T12554 T12553 agent by,disrupted
R8268 T12555 T12556 compound insertion,trap
R8269 T12556 T12557 compound trap,mutagenesis
R8270 T12557 T12554 pobj mutagenesis,by
R8271 T12558 T12557 prep with,mutagenesis
R8272 T12559 T12560 det a,vector
R8273 T12560 T12558 pobj vector,with
R8274 T12561 T12560 amod bicistronic,vector
R8275 T12562 T12560 compound reporter,vector
R8276 T12563 T12560 prep between,vector
R8277 T12564 T12565 nmod exon,1
R8278 T12565 T12563 pobj 1,between
R8279 T12566 T12565 cc and,1
R8280 T12567 T12565 conj 2,1
R8281 T12568 T12545 punct .,Diagram
R8282 T12570 T12571 det The,transcript
R8283 T12571 T12573 nsubj transcript,produces
R8284 T12572 T12571 amod bicistronic,transcript
R8285 T12574 T12575 nummod two,proteins
R8286 T12575 T12573 dobj proteins,produces
R8287 T12576 T12573 prep under,produces
R8288 T12577 T12576 pobj regulation,under
R8289 T12578 T12577 prep of,regulation
R8290 T12579 T12578 pobj RanBP2,of
R8291 T12580 T12573 punct .,produces
R8292 T12582 T12583 prep Upon,generated
R8293 T12584 T12582 pobj splicing,Upon
R8294 T12585 T12584 prep of,splicing
R8295 T12586 T12585 pobj RanBP2,of
R8296 T12587 T12583 punct ", ",generated
R8297 T12588 T12589 det a,fusion
R8298 T12589 T12583 nsubjpass fusion,generated
R8299 T12590 T12589 prep between,fusion
R8300 T12591 T12590 pobj exon,between
R8301 T12592 T12591 nummod 1,exon
R8302 T12593 T12591 cc and,exon
R8303 T12594 T12595 compound β,geo
R8304 T12595 T12591 conj geo,exon
R8305 T12596 T12595 punct -,geo
R8306 T12597 T12595 punct (,geo
R8307 T12598 T12599 det a,fusion
R8308 T12599 T12595 appos fusion,geo
R8309 T12600 T12599 prep between,fusion
R8310 T12601 T12602 det the,genes
R8311 T12602 T12600 pobj genes,between
R8312 T12603 T12604 nmod β,gal
R8313 T12604 T12602 nmod gal,genes
R8314 T12605 T12604 punct -,gal
R8315 T12606 T12604 cc and,gal
R8316 T12607 T12604 conj neo,gal
R8317 T12608 T12583 punct ),generated
R8318 T12609 T12583 auxpass is,generated
R8319 T12610 T12583 punct ", ",generated
R8320 T12611 T12612 mark while,translated
R8321 T12612 T12583 advcl translated,generated
R8322 T12613 T12614 amod human,phophatase
R8323 T12614 T12612 nsubjpass phophatase,translated
R8324 T12615 T12614 amod placental,phophatase
R8325 T12616 T12614 compound alkaline,phophatase
R8326 T12617 T12614 punct (,phophatase
R8327 T12618 T12614 appos PLAP,phophatase
R8328 T12619 T12612 punct ),translated
R8329 T12620 T12612 auxpass is,translated
R8330 T12621 T12612 advmod independently,translated
R8331 T12622 T12612 advcl using,translated
R8332 T12623 T12624 det the,site
R8333 T12624 T12622 dobj site,using
R8334 T12625 T12626 amod internal,entry
R8335 T12626 T12624 compound entry,site
R8336 T12627 T12626 compound ribosome,entry
R8337 T12628 T12583 punct .,generated
R8338 T12630 T12631 advcl Consistent,directed
R8339 T12632 T12630 prep with,Consistent
R8340 T12633 T12634 amod previous,studies
R8341 T12634 T12632 pobj studies,with
R8342 T12635 T12631 punct ", ",directed
R8343 T12636 T12637 det the,expression
R8344 T12637 T12631 nsubjpass expression,directed
R8345 T12638 T12637 prep of,expression
R8346 T12639 T12640 det the,former
R8347 T12640 T12638 pobj former,of
R8348 T12641 T12631 auxpass is,directed
R8349 T12642 T12631 prep to,directed
R8350 T12643 T12644 compound cell,bodies
R8351 T12644 T12642 pobj bodies,to
R8352 T12645 T12631 punct ", ",directed
R8353 T12646 T12647 mark while,targeted
R8354 T12647 T12631 advcl targeted,directed
R8355 T12648 T12647 nsubjpass expression,targeted
R8356 T12649 T12648 prep of,expression
R8357 T12650 T12651 det the,latter
R8358 T12651 T12649 pobj latter,of
R8359 T12652 T12647 auxpass is,targeted
R8360 T12653 T12647 prep to,targeted
R8361 T12654 T12655 det the,processes
R8362 T12655 T12653 pobj processes,to
R8363 T12656 T12655 amod axonal,processes
R8364 T12657 T12658 punct [,68
R8365 T12658 T12647 parataxis 68,targeted
R8366 T12659 T12658 nummod 67,68
R8367 T12660 T12658 punct ",",68
R8368 T12661 T12658 punct ],68
R8369 T12662 T12631 punct .,directed
R8370 T12664 T12665 amod Transcriptional,analysis
R8371 T12665 T12669 nsubj analysis,detects
R8372 T12666 T12665 nummod 5,analysis
R8373 T12667 T12666 punct ′,5
R8374 T12668 T12665 compound RACE,analysis
R8375 T12670 T12671 det a,fusion
R8376 T12671 T12669 dobj fusion,detects
R8377 T12672 T12671 prep between,fusion
R8378 T12673 T12672 pobj exon,between
R8379 T12674 T12673 nummod 1,exon
R8380 T12675 T12673 cc and,exon
R8381 T12676 T12677 compound β,geo
R8382 T12677 T12673 conj geo,exon
R8383 T12678 T12677 punct -,geo
R8384 T12679 T12669 punct .,detects

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12422 19-26 SO_EXT:0001026 denotes genomic
T12423 37-43 PR_EXT:000013712 denotes RanBP2
T12424 57-66 SO_EXT:sequence_insertion_entity_or_process denotes insertion
T12425 72-83 SO_EXT:sequence_alteration_process denotes mutagenesis
T12426 91-102 SO:0000879 denotes bicistronic
T12427 112-118 SO_EXT:0000440 denotes vector
T12428 127-131 SO_EXT:0000147 denotes exon
T12429 145-167 SO_EXT:0000079 denotes bicistronic transcript
T12430 181-189 CHEBI_PR_EXT:protein denotes proteins
T12431 196-206 GO:0065007 denotes regulation
T12432 210-216 PR_EXT:000013712 denotes RanBP2
T12433 223-231 GO:0008380 denotes splicing
T12434 235-241 PR_EXT:000013712 denotes RanBP2
T12435 245-251 SO_EXT:sequence_fusion_entity_or_process denotes fusion
T12436 260-264 SO_EXT:0000147 denotes exon
T12437 271-276 GO_EXT:beta_geo denotes β-geo
T12438 280-286 SO_EXT:sequence_fusion_entity_or_process denotes fusion
T12439 299-304 GO_EXT:0004565 denotes β-gal
T12440 309-312 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
T12441 313-318 SO_EXT:0000704 denotes genes
T12442 340-345 NCBITaxon:9606 denotes human
T12443 346-355 UBERON:0001987 denotes placental
T12444 346-375 PR_EXT:000003969 denotes placental alkaline phophatase
T12445 356-375 GO_PR_EXT:alkaline_phosphatase denotes alkaline phophatase
T12446 377-381 PR_EXT:000003969 denotes PLAP
T12447 400-410 GO:0006412 denotes translated
T12448 421-449 SO_EXT:0000243 denotes internal ribosome entry site
T12449 430-438 GO:0005840 denotes ribosome
T12450 489-499 GO:0010467 denotes expression
T12451 517-525 GO_EXT:biological_direction_or_guidance denotes directed
T12452 529-533 CL_GO_EXT:cell denotes cell
T12453 529-540 GO:0044297 denotes cell bodies
T12454 548-558 GO:0010467 denotes expression
T12455 576-584 GO_EXT:biological_routing_or_transport denotes targeted
T12456 592-608 GO:0030424 denotes axonal processes
T12457 618-633 GO_EXT:transcription denotes Transcriptional
T12458 661-667 SO_EXT:sequence_fusion_entity_or_process denotes fusion
T12459 676-680 SO_EXT:0000147 denotes exon
T12460 687-692 GO_EXT:beta_geo denotes β-geo

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12331 19-26 SO:0001026 denotes genomic
T12332 37-43 PR:000013712 denotes RanBP2
T12333 91-102 SO:0000879 denotes bicistronic
T12334 112-118 SO:0000440 denotes vector
T12335 127-131 SO:0000147 denotes exon
T12336 145-167 SO:0000079 denotes bicistronic transcript
T12337 196-206 GO:0065007 denotes regulation
T12338 210-216 PR:000013712 denotes RanBP2
T12339 223-231 GO:0008380 denotes splicing
T12340 235-241 PR:000013712 denotes RanBP2
T12341 260-264 SO:0000147 denotes exon
T12342 313-318 SO:0000704 denotes genes
T12343 340-345 NCBITaxon:9606 denotes human
T12344 346-355 UBERON:0001987 denotes placental
T12345 346-375 PR:000003969 denotes placental alkaline phophatase
T12346 377-381 PR:000003969 denotes PLAP
T12347 400-410 GO:0006412 denotes translated
T12348 421-449 SO:0000243 denotes internal ribosome entry site
T12349 430-438 GO:0005840 denotes ribosome
T12350 489-499 GO:0010467 denotes expression
T12351 529-540 GO:0044297 denotes cell bodies
T12352 548-558 GO:0010467 denotes expression
T12353 592-608 GO:0030424 denotes axonal processes
T12354 676-680 SO:0000147 denotes exon

2_test

Id Subject Object Predicate Lexical cue
17069463-11075368-85858834 610-612 11075368 denotes 67
17069463-11242070-85858835 613-615 11242070 denotes 68
T32843 610-612 11075368 denotes 67
T51336 613-615 11242070 denotes 68