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PMC:1584416 / 9925-10766 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1971 0-2 TO denotes To
T1972 3-7 VB denotes test
T1973 114-122 VBD denotes combined
T1974 8-11 DT denotes the
T1975 12-21 NN denotes potential
T1976 22-24 IN denotes of
T1977 25-26 DT denotes a
T1978 52-58 NN denotes allele
T1979 27-37 JJ denotes homozygous
T1980 38-44 JJ denotes lethal
T1981 45-46 `` denotes “
T1982 46-50 JJ denotes null
T1983 50-51 '' denotes ”
T1984 59-61 TO denotes to
T1985 75-85 VB denotes contribute
T1986 62-74 RB denotes nevertheless
T1987 86-88 IN denotes to
T1988 89-99 JJ denotes organismal
T1989 100-109 NN denotes phenotype
T1990 109-111 , denotes ,
T1991 111-113 PRP denotes we
T1992 123-125 DT denotes an
T1993 135-141 NN denotes allele
T1994 126-134 NN denotes Xpd†XPCS
T1995 142-146 IN denotes with
T1996 147-148 DT denotes a
T1997 163-169 NN denotes allele
T1998 149-155 JJ denotes viable
T1999 156-162 NN denotes XpdTTD
T2000 170-172 IN denotes by
T2001 173-181 VBG denotes crossing
T2002 182-185 DT denotes the
T2003 213-220 NNS denotes animals
T2004 186-199 VBG denotes corresponding
T2005 200-212 JJ denotes heterozygous
T2006 220-221 . denotes .
T2007 221-392 sentence denotes Similar to hemizygous TTD mice carrying one true Xpd knockout allele (XpdTTD/KO), compound heterozygous XpdTTD/†XPCS mice were born at the expected Mendelian frequencies.
T2008 222-229 JJ denotes Similar
T2009 349-353 VBN denotes born
T2010 230-232 IN denotes to
T2011 233-243 JJ denotes hemizygous
T2012 248-252 NNS denotes mice
T2013 244-247 NN denotes TTD
T2014 253-261 VBG denotes carrying
T2015 262-265 CD denotes one
T2016 284-290 NN denotes allele
T2017 266-270 JJ denotes true
T2018 271-274 NN denotes Xpd
T2019 275-283 NN denotes knockout
T2020 291-292 -LRB- denotes (
T2021 299-301 NN denotes KO
T2022 292-298 NN denotes XpdTTD
T2023 298-299 HYPH denotes /
T2024 301-302 -RRB- denotes )
T2025 302-304 , denotes ,
T2026 304-312 NN denotes compound
T2027 339-343 NNS denotes mice
T2028 313-325 JJ denotes heterozygous
T2029 326-332 NN denotes XpdTTD
T2030 333-338 NN denotes †XPCS
T2031 332-333 HYPH denotes /
T2032 344-348 VBD denotes were
T2033 354-356 IN denotes at
T2034 357-360 DT denotes the
T2035 380-391 NNS denotes frequencies
T2036 361-369 VBN denotes expected
T2037 370-379 JJ denotes Mendelian
T2038 391-392 . denotes .
T2039 392-588 sentence denotes Expression from the Xpd†XPCS allele was also reduced in the testis of compound heterozygous animals, whereas expression from the XpdTTD allele was increased relative to wt by ~5-fold (Figure 1E).
T2040 393-403 NN denotes Expression
T2041 438-445 VBN denotes reduced
T2042 404-408 IN denotes from
T2043 409-412 DT denotes the
T2044 422-428 NN denotes allele
T2045 413-421 NN denotes Xpd†XPCS
T2046 429-432 VBD denotes was
T2047 433-437 RB denotes also
T2048 446-448 IN denotes in
T2049 449-452 DT denotes the
T2050 453-459 NN denotes testis
T2051 460-462 IN denotes of
T2052 463-471 NN denotes compound
T2053 485-492 NNS denotes animals
T2054 472-484 JJ denotes heterozygous
T2055 492-494 , denotes ,
T2056 494-501 IN denotes whereas
T2057 540-549 VBN denotes increased
T2058 502-512 NN denotes expression
T2059 513-517 IN denotes from
T2060 518-521 DT denotes the
T2061 529-535 NN denotes allele
T2062 522-528 NN denotes XpdTTD
T2063 536-539 VBD denotes was
T2064 550-558 JJ denotes relative
T2065 559-561 IN denotes to
T2066 562-564 NN denotes wt
T2067 565-567 IN denotes by
T2068 568-569 SYM denotes ~
T2069 569-575 RB denotes 5-fold
T2070 576-577 -LRB- denotes (
T2071 584-586 NN denotes 1E
T2072 577-583 NN denotes Figure
T2073 586-587 -RRB- denotes )
T2074 587-588 . denotes .
T2075 588-841 sentence denotes Because of a lack of available antibodies and the inability to distinguish amongst various mutant forms of XPD differing only by single amino acid substitutions, we were unable to ascertain the relative amount of XPD protein from the different alleles.
T2076 589-596 IN denotes Because
T2077 754-758 VBD denotes were
T2078 597-599 IN denotes of
T2079 600-601 DT denotes a
T2080 602-606 NN denotes lack
T2081 607-609 IN denotes of
T2082 610-619 JJ denotes available
T2083 620-630 NNS denotes antibodies
T2084 631-634 CC denotes and
T2085 635-638 DT denotes the
T2086 639-648 NN denotes inability
T2087 649-651 TO denotes to
T2088 652-663 VB denotes distinguish
T2089 664-671 IN denotes amongst
T2090 672-679 JJ denotes various
T2091 687-692 NNS denotes forms
T2092 680-686 JJ denotes mutant
T2093 693-695 IN denotes of
T2094 696-699 NN denotes XPD
T2095 700-709 VBG denotes differing
T2096 710-714 RB denotes only
T2097 715-717 IN denotes by
T2098 718-724 JJ denotes single
T2099 736-749 NNS denotes substitutions
T2100 725-730 NN denotes amino
T2101 731-735 NN denotes acid
T2102 749-751 , denotes ,
T2103 751-753 PRP denotes we
T2104 759-765 JJ denotes unable
T2105 766-768 TO denotes to
T2106 769-778 VB denotes ascertain
T2107 779-782 DT denotes the
T2108 792-798 NN denotes amount
T2109 783-791 JJ denotes relative
T2110 799-801 IN denotes of
T2111 802-805 NN denotes XPD
T2112 806-813 NN denotes protein
T2113 814-818 IN denotes from
T2114 819-822 DT denotes the
T2115 833-840 NNS denotes alleles
T2116 823-832 JJ denotes different
T2117 840-841 . denotes .
R1241 T1971 T1972 aux To,test
R1242 T1972 T1973 advcl test,combined
R1243 T1974 T1975 det the,potential
R1244 T1975 T1972 dobj potential,test
R1245 T1976 T1975 prep of,potential
R1246 T1977 T1978 det a,allele
R1247 T1978 T1976 pobj allele,of
R1248 T1979 T1978 amod homozygous,allele
R1249 T1980 T1978 amod lethal,allele
R1250 T1981 T1978 punct “,allele
R1251 T1982 T1978 amod null,allele
R1252 T1983 T1978 punct ”,allele
R1253 T1984 T1985 aux to,contribute
R1254 T1985 T1975 acl contribute,potential
R1255 T1986 T1985 advmod nevertheless,contribute
R1256 T1987 T1985 prep to,contribute
R1257 T1988 T1989 amod organismal,phenotype
R1258 T1989 T1987 pobj phenotype,to
R1259 T1990 T1973 punct ", ",combined
R1260 T1991 T1973 nsubj we,combined
R1261 T1992 T1993 det an,allele
R1262 T1993 T1973 dobj allele,combined
R1263 T1994 T1993 compound Xpd†XPCS,allele
R1264 T1995 T1993 prep with,allele
R1265 T1996 T1997 det a,allele
R1266 T1997 T1995 pobj allele,with
R1267 T1998 T1997 amod viable,allele
R1268 T1999 T1997 compound XpdTTD,allele
R1269 T2000 T1973 prep by,combined
R1270 T2001 T2000 pcomp crossing,by
R1271 T2002 T2003 det the,animals
R1272 T2003 T2001 dobj animals,crossing
R1273 T2004 T2003 amod corresponding,animals
R1274 T2005 T2003 amod heterozygous,animals
R1275 T2006 T1973 punct .,combined
R1276 T2008 T2009 advcl Similar,born
R1277 T2010 T2008 prep to,Similar
R1278 T2011 T2012 amod hemizygous,mice
R1279 T2012 T2010 pobj mice,to
R1280 T2013 T2012 compound TTD,mice
R1281 T2014 T2012 acl carrying,mice
R1282 T2015 T2016 nummod one,allele
R1283 T2016 T2014 dobj allele,carrying
R1284 T2017 T2016 amod true,allele
R1285 T2018 T2019 compound Xpd,knockout
R1286 T2019 T2016 compound knockout,allele
R1287 T2020 T2021 punct (,KO
R1288 T2021 T2016 parataxis KO,allele
R1289 T2022 T2021 compound XpdTTD,KO
R1290 T2023 T2021 punct /,KO
R1291 T2024 T2021 punct ),KO
R1292 T2025 T2009 punct ", ",born
R1293 T2026 T2027 nmod compound,mice
R1294 T2027 T2009 nsubjpass mice,born
R1295 T2028 T2027 amod heterozygous,mice
R1296 T2029 T2030 compound XpdTTD,†XPCS
R1297 T2030 T2027 compound †XPCS,mice
R1298 T2031 T2030 punct /,†XPCS
R1299 T2032 T2009 auxpass were,born
R1300 T2033 T2009 prep at,born
R1301 T2034 T2035 det the,frequencies
R1302 T2035 T2033 pobj frequencies,at
R1303 T2036 T2035 amod expected,frequencies
R1304 T2037 T2035 amod Mendelian,frequencies
R1305 T2038 T2009 punct .,born
R1306 T2040 T2041 nsubjpass Expression,reduced
R1307 T2042 T2040 prep from,Expression
R1308 T2043 T2044 det the,allele
R1309 T2044 T2042 pobj allele,from
R1310 T2045 T2044 compound Xpd†XPCS,allele
R1311 T2046 T2041 auxpass was,reduced
R1312 T2047 T2041 advmod also,reduced
R1313 T2048 T2041 prep in,reduced
R1314 T2049 T2050 det the,testis
R1315 T2050 T2048 pobj testis,in
R1316 T2051 T2050 prep of,testis
R1317 T2052 T2053 nmod compound,animals
R1318 T2053 T2051 pobj animals,of
R1319 T2054 T2053 amod heterozygous,animals
R1320 T2055 T2041 punct ", ",reduced
R1321 T2056 T2057 mark whereas,increased
R1322 T2057 T2041 advcl increased,reduced
R1323 T2058 T2057 nsubjpass expression,increased
R1324 T2059 T2058 prep from,expression
R1325 T2060 T2061 det the,allele
R1326 T2061 T2059 pobj allele,from
R1327 T2062 T2061 compound XpdTTD,allele
R1328 T2063 T2057 auxpass was,increased
R1329 T2064 T2057 advcl relative,increased
R1330 T2065 T2064 prep to,relative
R1331 T2066 T2065 pobj wt,to
R1332 T2067 T2057 prep by,increased
R1333 T2068 T2069 punct ~,5-fold
R1334 T2069 T2067 pobj 5-fold,by
R1335 T2070 T2071 punct (,1E
R1336 T2071 T2057 parataxis 1E,increased
R1337 T2072 T2071 compound Figure,1E
R1338 T2073 T2071 punct ),1E
R1339 T2074 T2041 punct .,reduced
R1340 T2076 T2077 prep Because,were
R1341 T2078 T2076 pcomp of,Because
R1342 T2079 T2080 det a,lack
R1343 T2080 T2076 pobj lack,Because
R1344 T2081 T2080 prep of,lack
R1345 T2082 T2083 amod available,antibodies
R1346 T2083 T2081 pobj antibodies,of
R1347 T2084 T2083 cc and,antibodies
R1348 T2085 T2086 det the,inability
R1349 T2086 T2083 conj inability,antibodies
R1350 T2087 T2088 aux to,distinguish
R1351 T2088 T2086 acl distinguish,inability
R1352 T2089 T2088 prep amongst,distinguish
R1353 T2090 T2091 amod various,forms
R1354 T2091 T2089 pobj forms,amongst
R1355 T2092 T2091 amod mutant,forms
R1356 T2093 T2091 prep of,forms
R1357 T2094 T2093 pobj XPD,of
R1358 T2095 T2091 acl differing,forms
R1359 T2096 T2095 advmod only,differing
R1360 T2097 T2095 prep by,differing
R1361 T2098 T2099 amod single,substitutions
R1362 T2099 T2097 pobj substitutions,by
R1363 T2100 T2101 compound amino,acid
R1364 T2101 T2099 compound acid,substitutions
R1365 T2102 T2077 punct ", ",were
R1366 T2103 T2077 nsubj we,were
R1367 T2104 T2077 acomp unable,were
R1368 T2105 T2106 aux to,ascertain
R1369 T2106 T2104 xcomp ascertain,unable
R1370 T2107 T2108 det the,amount
R1371 T2108 T2106 dobj amount,ascertain
R1372 T2109 T2108 amod relative,amount
R1373 T2110 T2108 prep of,amount
R1374 T2111 T2112 compound XPD,protein
R1375 T2112 T2110 pobj protein,of
R1376 T2113 T2112 prep from,protein
R1377 T2114 T2115 det the,alleles
R1378 T2115 T2113 pobj alleles,from
R1379 T2116 T2115 amod different,alleles
R1380 T2117 T2077 punct .,were

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1782 52-58 SO:0001023 denotes allele
T1783 89-99 NCBITaxon:1 denotes organismal
T1784 126-129 PR:000007164 denotes Xpd
T1785 135-141 SO:0001023 denotes allele
T1786 156-159 PR:000007164 denotes Xpd
T1787 163-169 SO:0001023 denotes allele
T1788 213-220 NCBITaxon:33208 denotes animals
T1789 248-252 NCBITaxon:10088 denotes mice
T1790 271-274 PR:000007164 denotes Xpd
T1791 284-290 SO:0001023 denotes allele
T1792 292-295 PR:000007164 denotes Xpd
T1793 326-329 PR:000007164 denotes Xpd
T1794 339-343 NCBITaxon:10088 denotes mice
T1795 349-353 GO:0007567 denotes born
T1796 393-403 GO:0010467 denotes Expression
T1797 413-416 PR:000007164 denotes Xpd
T1798 422-428 SO:0001023 denotes allele
T1799 453-459 UBERON:0000473 denotes testis
T1800 485-492 NCBITaxon:33208 denotes animals
T1801 502-512 GO:0010467 denotes expression
T1802 522-525 PR:000007164 denotes Xpd
T1803 529-535 SO:0001023 denotes allele
T1804 620-630 GO:0042571 denotes antibodies
T1805 696-699 PR:000007164 denotes XPD
T1806 802-805 PR:000007164 denotes XPD
T1807 833-840 SO:0001023 denotes alleles

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1861 38-44 GO_EXT:fatality_or_lethality denotes lethal
T1862 46-50 SO_EXT:sequence_nullness denotes null
T1863 52-58 SO_EXT:0001023 denotes allele
T1864 89-99 NCBITaxon:1 denotes organismal
T1865 126-129 PR_EXT:000007164 denotes Xpd
T1866 135-141 SO_EXT:0001023 denotes allele
T1867 156-159 PR_EXT:000007164 denotes Xpd
T1868 163-169 SO_EXT:0001023 denotes allele
T1869 213-220 NCBITaxon:33208 denotes animals
T1870 248-252 NCBITaxon:10088 denotes mice
T1871 271-274 PR_EXT:000007164 denotes Xpd
T1872 284-290 SO_EXT:0001023 denotes allele
T1873 292-295 PR_EXT:000007164 denotes Xpd
T1874 326-329 PR_EXT:000007164 denotes Xpd
T1875 339-343 NCBITaxon:10088 denotes mice
T1876 349-353 GO:0007567 denotes born
T1877 393-403 GO:0010467 denotes Expression
T1878 413-416 PR_EXT:000007164 denotes Xpd
T1879 422-428 SO_EXT:0001023 denotes allele
T1880 453-459 UBERON:0000473 denotes testis
T1881 485-492 NCBITaxon:33208 denotes animals
T1882 502-512 GO:0010467 denotes expression
T1883 522-525 PR_EXT:000007164 denotes Xpd
T1884 529-535 SO_EXT:0001023 denotes allele
T1885 562-564 SO_EXT:wild_type_entity_or_quality denotes wt
T1886 620-630 GO:0042571 denotes antibodies
T1887 680-686 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T1888 696-699 PR_EXT:000007164 denotes XPD
T1889 725-735 CHEBI_SO_EXT:amino_acid denotes amino acid
T1890 736-749 SO_EXT:sequence_substitution_entity_or_process denotes substitutions
T1891 802-805 PR_EXT:000007164 denotes XPD
T1892 806-813 CHEBI_PR_EXT:protein denotes protein
T1893 833-840 SO_EXT:0001023 denotes alleles