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PMC:1584416 / 35732-36162 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6809 233-430 sentence denotes Two or more cell lines per genotype (except for the XpdTTD/†XP cells, in which only one cell line was used in repeated experiments) were used, and experiments were repeated 2–6 times per genotype.
T6810 234-237 CD denotes Two
T6811 251-256 NNS denotes lines
T6812 238-240 CC denotes or
T6813 241-245 JJR denotes more
T6814 246-250 NN denotes cell
T6815 371-375 VBN denotes used
T6816 257-260 IN denotes per
T6817 261-269 NN denotes genotype
T6818 270-271 -LRB- denotes (
T6819 271-277 IN denotes except
T6820 278-281 IN denotes for
T6821 282-285 DT denotes the
T6822 297-302 NNS denotes cells
T6823 286-292 NN denotes XpdTTD
T6824 293-296 NN denotes †XP
T6825 292-293 HYPH denotes /
T6826 302-304 , denotes ,
T6827 304-306 IN denotes in
T6828 336-340 VBN denotes used
T6829 307-312 WDT denotes which
T6830 313-317 RB denotes only
T6831 327-331 NN denotes line
T6832 318-321 CD denotes one
T6833 322-326 NN denotes cell
T6834 332-335 VBD denotes was
T6835 341-343 IN denotes in
T6836 344-352 VBN denotes repeated
T6837 353-364 NNS denotes experiments
T6838 364-365 -RRB- denotes )
T6839 366-370 VBD denotes were
T6840 375-377 , denotes ,
T6841 377-380 CC denotes and
T6842 381-392 NNS denotes experiments
T6843 398-406 VBN denotes repeated
T6844 393-397 VBD denotes were
T6845 407-408 CD denotes 2
T6846 409-410 CD denotes 6
T6847 408-409 HYPH denotes –
T6848 411-416 NNS denotes times
T6849 417-420 IN denotes per
T6850 421-429 NN denotes genotype
T6851 429-430 . denotes .
T6770 0-11 JJ denotes Comparative
T6771 12-30 NN denotes immunofluorescence
T6772 30-31 . denotes .
T6773 31-233 sentence denotes Latex bead labelling and comparative immunofluorescence analysis of the p62 subunit of the TFIIH was performed as described previously [16,17] using primary mouse embryonic fibroblasts at passages 2–5.
T6774 32-37 NN denotes Latex
T6775 43-52 NN denotes labelling
T6776 38-42 NN denotes bead
T6777 133-142 VBN denotes performed
T6778 53-56 CC denotes and
T6779 57-68 JJ denotes comparative
T6780 88-96 NN denotes analysis
T6781 69-87 NN denotes immunofluorescence
T6782 97-99 IN denotes of
T6783 100-103 DT denotes the
T6784 108-115 NN denotes subunit
T6785 104-107 NN denotes p62
T6786 116-118 IN denotes of
T6787 119-122 DT denotes the
T6788 123-128 NN denotes TFIIH
T6789 129-132 VBD denotes was
T6790 143-145 IN denotes as
T6791 146-155 VBN denotes described
T6792 156-166 RB denotes previously
T6793 167-168 -LRB- denotes [
T6794 171-173 CD denotes 17
T6795 168-170 CD denotes 16
T6796 170-171 , denotes ,
T6797 173-174 -RRB- denotes ]
T6798 175-180 VBG denotes using
T6799 181-188 JJ denotes primary
T6800 205-216 NNS denotes fibroblasts
T6801 189-194 NN denotes mouse
T6802 195-204 JJ denotes embryonic
T6803 217-219 IN denotes at
T6804 220-228 NNS denotes passages
T6805 229-230 CD denotes 2
T6806 230-231 SYM denotes –
T6807 231-232 CD denotes 5
T6808 232-233 . denotes .
R4649 T6770 T6771 amod Comparative,immunofluorescence
R4650 T6772 T6771 punct .,immunofluorescence
R4651 T6774 T6775 compound Latex,labelling
R4652 T6775 T6777 nsubjpass labelling,performed
R4653 T6776 T6775 compound bead,labelling
R4654 T6778 T6775 cc and,labelling
R4655 T6779 T6780 amod comparative,analysis
R4656 T6780 T6775 conj analysis,labelling
R4657 T6781 T6780 compound immunofluorescence,analysis
R4658 T6782 T6780 prep of,analysis
R4659 T6783 T6784 det the,subunit
R4660 T6784 T6782 pobj subunit,of
R4661 T6785 T6784 compound p62,subunit
R4662 T6786 T6784 prep of,subunit
R4663 T6787 T6788 det the,TFIIH
R4664 T6788 T6786 pobj TFIIH,of
R4665 T6789 T6777 auxpass was,performed
R4666 T6790 T6791 mark as,described
R4667 T6791 T6777 advcl described,performed
R4668 T6792 T6791 advmod previously,described
R4669 T6793 T6794 punct [,17
R4670 T6794 T6791 parataxis 17,described
R4671 T6795 T6794 nummod 16,17
R4672 T6796 T6794 punct ",",17
R4673 T6797 T6794 punct ],17
R4674 T6798 T6777 advcl using,performed
R4675 T6799 T6800 amod primary,fibroblasts
R4676 T6800 T6798 dobj fibroblasts,using
R4677 T6801 T6800 nmod mouse,fibroblasts
R4678 T6802 T6800 amod embryonic,fibroblasts
R4679 T6803 T6798 prep at,using
R4680 T6804 T6805 nmod passages,2
R4681 T6805 T6803 pobj 2,at
R4682 T6806 T6807 punct –,5
R4683 T6807 T6805 prep 5,2
R4684 T6808 T6777 punct .,performed
R4685 T6810 T6811 nummod Two,lines
R4686 T6811 T6815 nsubjpass lines,used
R4687 T6812 T6810 cc or,Two
R4688 T6813 T6810 conj more,Two
R4689 T6814 T6811 compound cell,lines
R4690 T6816 T6811 prep per,lines
R4691 T6817 T6816 pobj genotype,per
R4692 T6818 T6819 punct (,except
R4693 T6819 T6811 parataxis except,lines
R4694 T6820 T6819 prep for,except
R4695 T6821 T6822 det the,cells
R4696 T6822 T6820 pobj cells,for
R4697 T6823 T6824 compound XpdTTD,†XP
R4698 T6824 T6822 compound †XP,cells
R4699 T6825 T6824 punct /,†XP
R4700 T6826 T6822 punct ", ",cells
R4701 T6827 T6828 prep in,used
R4702 T6828 T6822 relcl used,cells
R4703 T6829 T6827 pobj which,in
R4704 T6830 T6831 advmod only,line
R4705 T6831 T6828 nsubjpass line,used
R4706 T6832 T6831 nummod one,line
R4707 T6833 T6831 compound cell,line
R4708 T6834 T6828 auxpass was,used
R4709 T6835 T6828 prep in,used
R4710 T6836 T6837 amod repeated,experiments
R4711 T6837 T6835 pobj experiments,in
R4712 T6838 T6819 punct ),except
R4713 T6839 T6815 auxpass were,used
R4714 T6840 T6815 punct ", ",used
R4715 T6841 T6815 cc and,used
R4716 T6842 T6843 nsubjpass experiments,repeated
R4717 T6843 T6815 conj repeated,used
R4718 T6844 T6843 auxpass were,repeated
R4719 T6845 T6846 compound 2,6
R4720 T6846 T6848 nummod 6,times
R4721 T6847 T6846 punct –,6
R4722 T6848 T6843 dobj times,repeated
R4723 T6849 T6848 prep per,times
R4724 T6850 T6849 pobj genotype,per
R4725 T6851 T6843 punct .,repeated

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6750 104-118 _FRAGMENT denotes p62 subunit of
T6751 123-128 PR:000008317 denotes TFIIH
T6752 123-128 GO:0005675 denotes TFIIH
T6753 189-194 NCBITaxon:10088 denotes mouse
T6754 195-204 UBERON:0000922 denotes embryonic
T6755 205-216 CL:0000057 denotes fibroblasts
T6756 286-289 PR:000007164 denotes Xpd
R4647 T6751 T6750 _lexicallyChainedTo TFIIH,p62 subunit of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6758 104-118 _FRAGMENT denotes p62 subunit of
T6759 123-128 PR_EXT:000008317 denotes TFIIH
T6760 123-128 GO:0005675 denotes TFIIH
T6761 189-194 NCBITaxon:10088 denotes mouse
T6762 195-204 UBERON:0000922 denotes embryonic
T6763 205-216 CL:0000057 denotes fibroblasts
T6764 246-250 CL_GO_EXT:cell denotes cell
T6765 261-269 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T6766 286-289 PR_EXT:000007164 denotes Xpd
T6767 297-302 CL_GO_EXT:cell denotes cells
T6768 322-326 CL_GO_EXT:cell denotes cell
T6769 421-429 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T6757 43-52 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelling
R4648 T6759 T6758 _lexicallyChainedTo TFIIH,p62 subunit of

2_test

Id Subject Object Predicate Lexical cue
17020410-11242112-84795173 168-170 11242112 denotes 16
17020410-12393803-84795174 171-173 12393803 denotes 17
T99220 168-170 11242112 denotes 16
T28976 171-173 12393803 denotes 17