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PMC:1584416 / 3183-3484 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T780 0-301 sentence denotes XPD encodes one of the two helicase components of basal transcription/DNA repair factor IIH (TFIIH), a ten-subunit, multifunctional complex that is essential for multiple processes, including basal transcription initiation and DNA damage repair via the nucleotide excision repair (NER) pathway [6,7].
T781 1-4 NN denotes XPD
T782 5-12 VBZ denotes encodes
T783 13-16 CD denotes one
T784 17-19 IN denotes of
T785 20-23 DT denotes the
T786 37-47 NNS denotes components
T787 24-27 CD denotes two
T788 28-36 NN denotes helicase
T789 48-50 IN denotes of
T790 51-56 JJ denotes basal
T791 89-92 NN denotes IIH
T792 57-70 NN denotes transcription
T793 70-71 HYPH denotes /
T794 71-74 NN denotes DNA
T795 75-81 NN denotes repair
T796 82-88 NN denotes factor
T797 93-94 -LRB- denotes (
T798 94-99 NN denotes TFIIH
T799 99-100 -RRB- denotes )
T800 100-102 , denotes ,
T801 102-103 DT denotes a
T802 133-140 NN denotes complex
T803 104-107 CD denotes ten
T804 108-115 NN denotes subunit
T805 107-108 HYPH denotes -
T806 115-117 , denotes ,
T807 117-132 JJ denotes multifunctional
T808 141-145 WDT denotes that
T809 146-148 VBZ denotes is
T810 149-158 JJ denotes essential
T811 159-162 IN denotes for
T812 163-171 JJ denotes multiple
T813 172-181 NNS denotes processes
T814 181-183 , denotes ,
T815 183-192 VBG denotes including
T816 193-198 JJ denotes basal
T817 213-223 NN denotes initiation
T818 199-212 NN denotes transcription
T819 224-227 CC denotes and
T820 228-231 NN denotes DNA
T821 239-245 NN denotes repair
T822 232-238 NN denotes damage
T823 246-249 IN denotes via
T824 250-253 DT denotes the
T825 287-294 NN denotes pathway
T826 254-264 NN denotes nucleotide
T827 274-280 NN denotes repair
T828 265-273 NN denotes excision
T829 281-282 -LRB- denotes (
T830 282-285 NN denotes NER
T831 285-286 -RRB- denotes )
T832 295-296 -LRB- denotes [
T833 298-299 CD denotes 7
T834 296-297 CD denotes 6
T835 297-298 , denotes ,
T836 299-300 -RRB- denotes ]
T837 300-301 . denotes .
R450 T781 T782 nsubj XPD,encodes
R451 T783 T782 dobj one,encodes
R452 T784 T783 prep of,one
R453 T785 T786 det the,components
R454 T786 T784 pobj components,of
R455 T787 T786 nummod two,components
R456 T788 T786 compound helicase,components
R457 T789 T786 prep of,components
R458 T790 T791 amod basal,IIH
R459 T791 T789 pobj IIH,of
R460 T792 T791 nmod transcription,IIH
R461 T793 T792 punct /,transcription
R462 T794 T795 compound DNA,repair
R463 T795 T792 appos repair,transcription
R464 T796 T791 compound factor,IIH
R465 T797 T791 punct (,IIH
R466 T798 T791 appos TFIIH,IIH
R467 T799 T783 punct ),one
R468 T800 T783 punct ", ",one
R469 T801 T802 det a,complex
R470 T802 T783 appos complex,one
R471 T803 T804 nummod ten,subunit
R472 T804 T802 nmod subunit,complex
R473 T805 T804 punct -,subunit
R474 T806 T802 punct ", ",complex
R475 T807 T802 amod multifunctional,complex
R476 T808 T809 dep that,is
R477 T809 T802 relcl is,complex
R478 T810 T809 acomp essential,is
R479 T811 T810 prep for,essential
R480 T812 T813 amod multiple,processes
R481 T813 T811 pobj processes,for
R482 T814 T813 punct ", ",processes
R483 T815 T813 prep including,processes
R484 T816 T817 amod basal,initiation
R486 T818 T817 compound transcription,initiation
R487 T819 T817 cc and,initiation
R488 T820 T821 compound DNA,repair
R490 T822 T821 compound damage,repair
R491 T823 T821 prep via,repair
R492 T824 T825 det the,pathway
R493 T825 T823 pobj pathway,via
R494 T826 T827 nmod nucleotide,repair
R495 T827 T825 nmod repair,pathway
R496 T828 T827 nmod excision,repair
R497 T829 T827 punct (,repair
R498 T830 T827 appos NER,repair
R499 T831 T825 punct ),pathway
R500 T832 T833 punct [,7
R501 T833 T783 parataxis 7,one
R502 T834 T833 nummod 6,7
R503 T835 T833 punct ",",7
R504 T836 T833 punct ],7
R505 T837 T782 punct .,encodes
R485 T817 T815 pobj initiation,including
R489 T821 T817 conj repair,initiation

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T429 1-4 PR:000007164 denotes XPD
T430 51-92 GO:0005675 denotes basal transcription/DNA repair factor IIH
T431 71-81 GO:0006281 denotes DNA repair
T432 94-99 GO:0005675 denotes TFIIH
T433 133-140 GO:0032991 denotes complex
T434 228-245 GO:0006281 denotes DNA damage repair
T435 254-280 GO:0006289 denotes nucleotide excision repair
T436 282-285 GO:0006289 denotes NER

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T499 1-4 PR_EXT:000007164 denotes XPD
T500 5-12 SO_EXT:sequence_coding_function denotes encodes
T501 28-36 GO_EXT:0004386 denotes helicase
T502 51-92 GO:0005675 denotes basal transcription/DNA repair factor IIH
T503 57-70 GO_EXT:transcription denotes transcription
T504 57-70 _FRAGMENT denotes transcription
T505 82-88 GO_EXT:transcription_factor denotes factor
T506 71-74 CHEBI_SO_EXT:DNA denotes DNA
T507 71-81 GO:0006281 denotes DNA repair
T508 94-99 GO:0005675 denotes TFIIH
T509 133-140 GO:0032991 denotes complex
T510 199-212 GO_EXT:transcription denotes transcription
T511 228-231 CHEBI_SO_EXT:DNA denotes DNA
T512 228-245 GO:0006281 denotes DNA damage repair
T513 254-264 CHEBI_SO_EXT:nucleotide denotes nucleotide
T514 254-280 GO:0006289 denotes nucleotide excision repair
T515 265-273 SO_EXT:sequence_deletion_process denotes excision
T516 282-285 GO:0006289 denotes NER
R245 T505 T504 _lexicallyChainedTo factor,transcription

2_test

Id Subject Object Predicate Lexical cue
17020410-15220921-84795124 296-297 15220921 denotes 6
17020410-8465201-84795125 298-299 8465201 denotes 7
T92258 296-297 15220921 denotes 6
T31924 298-299 8465201 denotes 7