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PMC:1584416 / 26177-27032 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4817 0-2 PRP denotes We
T4818 3-11 VBD denotes observed
T4819 12-23 NNS denotes differences
T4820 24-26 IN denotes in
T4821 27-30 DT denotes the
T4822 31-38 NN denotes ability
T4823 39-41 IN denotes of
T4824 42-48 NN denotes XpdTTD
T4825 49-55 CC denotes versus
T4826 56-66 JJ denotes homozygous
T4827 94-101 NNS denotes alleles
T4828 67-73 JJ denotes lethal
T4829 74-82 NN denotes Xpd†XPCS
T4830 83-86 CC denotes and
T4831 87-93 NN denotes Xpd†XP
T4832 102-104 TO denotes to
T4833 105-113 VB denotes function
T4834 114-116 IN denotes in
T4835 117-120 CD denotes two
T4836 143-153 NNS denotes phenotypes
T4837 121-134 NN denotes transcription
T4838 135-142 VBN denotes related
T4839 134-135 HYPH denotes -
T4840 154-163 VBN denotes separated
T4841 164-166 IN denotes in
T4842 167-170 DT denotes the
T4843 171-179 NN denotes organism
T4844 180-182 IN denotes by
T4845 183-187 CC denotes both
T4846 188-192 NN denotes time
T4847 193-196 CC denotes and
T4848 197-202 NN denotes space
T4849 202-204 : denotes :
T4850 204-213 JJ denotes embryonic
T4851 214-223 NN denotes lethality
T4852 224-227 CC denotes and
T4853 228-236 JJ denotes terminal
T4854 237-252 NN denotes differentiation
T4855 253-255 IN denotes of
T4856 256-267 VBG denotes enucleating
T4857 268-272 NN denotes skin
T4858 273-276 CC denotes and
T4859 277-282 NN denotes blood
T4860 283-288 NNS denotes cells
T4861 288-289 . denotes .
T4862 289-469 sentence denotes The preblastocyst-stage homozygous lethality shared by the XpdKO, Xpd†XPCS, and Xpd†XP alleles most likely reflects a defect in basal transcription that is incompatible with life.
T4863 290-293 DT denotes The
T4864 325-334 NN denotes lethality
T4865 294-307 NN denotes preblastocyst
T4866 308-313 NN denotes stage
T4867 307-308 HYPH denotes -
T4868 314-324 JJ denotes homozygous
T4869 397-405 VBZ denotes reflects
T4870 335-341 VBN denotes shared
T4871 342-344 IN denotes by
T4872 345-348 DT denotes the
T4873 377-384 NNS denotes alleles
T4874 349-354 NN denotes XpdKO
T4875 354-356 , denotes ,
T4876 356-364 NN denotes Xpd†XPCS
T4877 364-366 , denotes ,
T4878 366-369 CC denotes and
T4879 370-376 NN denotes Xpd†XP
T4880 385-389 RBS denotes most
T4881 390-396 RB denotes likely
T4882 406-407 DT denotes a
T4883 408-414 NN denotes defect
T4884 415-417 IN denotes in
T4885 418-423 JJ denotes basal
T4886 424-437 NN denotes transcription
T4887 438-442 WDT denotes that
T4888 443-445 VBZ denotes is
T4889 446-458 JJ denotes incompatible
T4890 459-463 IN denotes with
T4891 464-468 NN denotes life
T4892 468-469 . denotes .
T4893 469-590 sentence denotes In XpdTTD/ †XPCS and XpdTTD/ †XP compound heterozygous mice, embryonic lethality was fully rescued by the XpdTTD allele.
T4894 470-472 IN denotes In
T4895 561-568 VBN denotes rescued
T4896 473-479 NN denotes XpdTTD
T4897 480-486 NN denotes  †XPCS
T4898 479-480 HYPH denotes /
T4899 525-529 NNS denotes mice
T4900 487-490 CC denotes and
T4901 491-497 NN denotes XpdTTD
T4902 498-502 NN denotes  †XP
T4903 497-498 HYPH denotes /
T4904 503-511 NN denotes compound
T4905 512-524 JJ denotes heterozygous
T4906 529-531 , denotes ,
T4907 531-540 JJ denotes embryonic
T4908 541-550 NN denotes lethality
T4909 551-554 VBD denotes was
T4910 555-560 RB denotes fully
T4911 569-571 IN denotes by
T4912 572-575 DT denotes the
T4913 583-589 NN denotes allele
T4914 576-582 NN denotes XpdTTD
T4915 589-590 . denotes .
T4916 590-855 sentence denotes Because embryonic lethality was also fully rescued in XpdTTD/KO hemizygous mice, the XpdTTD allele can be considered as wt and thus dominant to each of the homozygous lethal alleles (XpdKO, Xpd†XPCS, and Xpd†XP) with respect to this particular phenotype (Table 2).
T4917 591-598 IN denotes Because
T4918 634-641 VBN denotes rescued
T4919 599-608 JJ denotes embryonic
T4920 609-618 NN denotes lethality
T4921 619-622 VBD denotes was
T4922 623-627 RB denotes also
T4923 628-633 RB denotes fully
T4924 697-707 VBN denotes considered
T4925 642-644 IN denotes in
T4926 645-651 NN denotes XpdTTD
T4927 652-654 NN denotes KO
T4928 651-652 HYPH denotes /
T4929 666-670 NNS denotes mice
T4930 655-665 JJ denotes hemizygous
T4931 670-672 , denotes ,
T4932 672-675 DT denotes the
T4933 683-689 NN denotes allele
T4934 676-682 NN denotes XpdTTD
T4935 690-693 MD denotes can
T4936 694-696 VB denotes be
T4937 708-710 IN denotes as
T4938 711-713 NN denotes wt
T4939 714-717 CC denotes and
T4940 718-722 RB denotes thus
T4941 723-731 JJ denotes dominant
T4942 732-734 IN denotes to
T4943 735-739 DT denotes each
T4944 740-742 IN denotes of
T4945 743-746 DT denotes the
T4946 765-772 NNS denotes alleles
T4947 747-757 JJ denotes homozygous
T4948 758-764 JJ denotes lethal
T4949 773-774 -LRB- denotes (
T4950 774-779 NN denotes XpdKO
T4951 779-781 , denotes ,
T4952 781-789 NN denotes Xpd†XPCS
T4953 789-791 , denotes ,
T4954 791-794 CC denotes and
T4955 795-801 NN denotes Xpd†XP
T4956 801-802 -RRB- denotes )
T4957 803-807 IN denotes with
T4958 808-815 NN denotes respect
T4959 816-818 IN denotes to
T4960 819-823 DT denotes this
T4961 835-844 NN denotes phenotype
T4962 824-834 JJ denotes particular
T4963 845-846 -LRB- denotes (
T4964 846-851 NN denotes Table
T4965 852-853 CD denotes 2
T4966 853-854 -RRB- denotes )
T4967 854-855 . denotes .
R3190 T4817 T4818 nsubj We,observed
R3191 T4819 T4818 dobj differences,observed
R3192 T4820 T4819 prep in,differences
R3193 T4821 T4822 det the,ability
R3194 T4822 T4820 pobj ability,in
R3195 T4823 T4822 prep of,ability
R3196 T4824 T4823 pobj XpdTTD,of
R3197 T4825 T4824 cc versus,XpdTTD
R3198 T4826 T4827 amod homozygous,alleles
R3199 T4827 T4824 conj alleles,XpdTTD
R3200 T4828 T4827 amod lethal,alleles
R3201 T4829 T4827 nmod Xpd†XPCS,alleles
R3202 T4830 T4829 cc and,Xpd†XPCS
R3203 T4831 T4829 conj Xpd†XP,Xpd†XPCS
R3204 T4832 T4833 aux to,function
R3205 T4833 T4822 acl function,ability
R3206 T4834 T4833 prep in,function
R3207 T4835 T4836 nummod two,phenotypes
R3208 T4836 T4834 pobj phenotypes,in
R3209 T4837 T4838 npadvmod transcription,related
R3210 T4838 T4836 amod related,phenotypes
R3211 T4839 T4838 punct -,related
R3212 T4840 T4836 acl separated,phenotypes
R3213 T4841 T4840 prep in,separated
R3214 T4842 T4843 det the,organism
R3215 T4843 T4841 pobj organism,in
R3216 T4844 T4840 prep by,separated
R3217 T4845 T4846 preconj both,time
R3218 T4846 T4844 pobj time,by
R3219 T4847 T4846 cc and,time
R3220 T4848 T4846 conj space,time
R3221 T4849 T4819 punct : ,differences
R3222 T4850 T4851 amod embryonic,lethality
R3223 T4851 T4819 appos lethality,differences
R3224 T4852 T4851 cc and,lethality
R3225 T4853 T4854 amod terminal,differentiation
R3226 T4854 T4851 conj differentiation,lethality
R3227 T4855 T4854 prep of,differentiation
R3228 T4856 T4857 amod enucleating,skin
R3229 T4857 T4855 pobj skin,of
R3230 T4858 T4857 cc and,skin
R3231 T4859 T4860 compound blood,cells
R3232 T4860 T4857 conj cells,skin
R3233 T4861 T4818 punct .,observed
R3234 T4863 T4864 det The,lethality
R3235 T4864 T4869 nsubj lethality,reflects
R3236 T4865 T4866 nmod preblastocyst,stage
R3237 T4866 T4864 nmod stage,lethality
R3238 T4867 T4866 punct -,stage
R3239 T4868 T4864 amod homozygous,lethality
R3240 T4870 T4864 acl shared,lethality
R3241 T4871 T4870 agent by,shared
R3242 T4872 T4873 det the,alleles
R3243 T4873 T4871 pobj alleles,by
R3244 T4874 T4873 nmod XpdKO,alleles
R3245 T4875 T4874 punct ", ",XpdKO
R3246 T4876 T4874 conj Xpd†XPCS,XpdKO
R3247 T4877 T4876 punct ", ",Xpd†XPCS
R3248 T4878 T4876 cc and,Xpd†XPCS
R3249 T4879 T4876 conj Xpd†XP,Xpd†XPCS
R3250 T4880 T4881 advmod most,likely
R3251 T4881 T4869 advmod likely,reflects
R3252 T4882 T4883 det a,defect
R3253 T4883 T4869 dobj defect,reflects
R3254 T4884 T4883 prep in,defect
R3255 T4885 T4886 amod basal,transcription
R3256 T4886 T4884 pobj transcription,in
R3257 T4887 T4888 dep that,is
R3258 T4888 T4883 relcl is,defect
R3259 T4889 T4888 acomp incompatible,is
R3260 T4890 T4889 prep with,incompatible
R3261 T4891 T4890 pobj life,with
R3262 T4892 T4869 punct .,reflects
R3263 T4894 T4895 prep In,rescued
R3264 T4896 T4897 nmod XpdTTD, †XPCS
R3265 T4897 T4899 nmod  †XPCS,mice
R3266 T4898 T4897 punct /, †XPCS
R3267 T4899 T4894 pobj mice,In
R3268 T4900 T4897 cc and, †XPCS
R3269 T4901 T4902 compound XpdTTD, †XP
R3270 T4902 T4897 conj  †XP, †XPCS
R3271 T4903 T4902 punct /, †XP
R3272 T4904 T4899 nmod compound,mice
R3273 T4905 T4899 amod heterozygous,mice
R3274 T4906 T4895 punct ", ",rescued
R3275 T4907 T4908 amod embryonic,lethality
R3276 T4908 T4895 nsubjpass lethality,rescued
R3277 T4909 T4895 auxpass was,rescued
R3278 T4910 T4895 advmod fully,rescued
R3279 T4911 T4895 agent by,rescued
R3280 T4912 T4913 det the,allele
R3281 T4913 T4911 pobj allele,by
R3282 T4914 T4913 compound XpdTTD,allele
R3283 T4915 T4895 punct .,rescued
R3284 T4917 T4918 mark Because,rescued
R3285 T4918 T4924 advcl rescued,considered
R3286 T4919 T4920 amod embryonic,lethality
R3287 T4920 T4918 nsubjpass lethality,rescued
R3288 T4921 T4918 auxpass was,rescued
R3289 T4922 T4918 advmod also,rescued
R3290 T4923 T4918 advmod fully,rescued
R3291 T4925 T4918 prep in,rescued
R3292 T4926 T4927 nmod XpdTTD,KO
R3293 T4927 T4929 nmod KO,mice
R3294 T4928 T4927 punct /,KO
R3295 T4929 T4925 pobj mice,in
R3296 T4930 T4929 amod hemizygous,mice
R3297 T4931 T4924 punct ", ",considered
R3298 T4932 T4933 det the,allele
R3299 T4933 T4924 nsubjpass allele,considered
R3300 T4934 T4933 compound XpdTTD,allele
R3301 T4935 T4924 aux can,considered
R3302 T4936 T4924 auxpass be,considered
R3303 T4937 T4924 prep as,considered
R3304 T4938 T4937 pobj wt,as
R3305 T4939 T4938 cc and,wt
R3306 T4940 T4941 advmod thus,dominant
R3307 T4941 T4938 conj dominant,wt
R3308 T4942 T4941 prep to,dominant
R3309 T4943 T4942 pobj each,to
R3310 T4944 T4943 prep of,each
R3311 T4945 T4946 det the,alleles
R3312 T4946 T4944 pobj alleles,of
R3313 T4947 T4946 amod homozygous,alleles
R3314 T4948 T4946 amod lethal,alleles
R3315 T4949 T4950 punct (,XpdKO
R3316 T4950 T4946 parataxis XpdKO,alleles
R3317 T4951 T4950 punct ", ",XpdKO
R3318 T4952 T4950 conj Xpd†XPCS,XpdKO
R3319 T4953 T4952 punct ", ",Xpd†XPCS
R3320 T4954 T4952 cc and,Xpd†XPCS
R3321 T4955 T4952 conj Xpd†XP,Xpd†XPCS
R3322 T4956 T4950 punct ),XpdKO
R3323 T4957 T4941 prep with,dominant
R3324 T4958 T4957 pobj respect,with
R3325 T4959 T4958 prep to,respect
R3326 T4960 T4961 det this,phenotype
R3327 T4961 T4959 pobj phenotype,to
R3328 T4962 T4961 amod particular,phenotype
R3329 T4963 T4964 punct (,Table
R3330 T4964 T4924 parataxis Table,considered
R3331 T4965 T4964 nummod 2,Table
R3332 T4966 T4964 punct ),Table
R3333 T4967 T4924 punct .,considered

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T4619 42-45 PR:000007164 denotes Xpd
T4620 74-77 PR:000007164 denotes Xpd
T4621 87-90 PR:000007164 denotes Xpd
T4622 94-101 SO:0001023 denotes alleles
T4623 171-179 NCBITaxon:1 denotes organism
T4624 204-213 UBERON:0000922 denotes embryonic
T4626 237-255,283-288 GO:0030154 denotes differentiation of cells
T4627 256-267 GO:0090601 denotes enucleating
T4629 256-267,283-288 CL:0000225 denotes enucleating cells
T4630 277-282 UBERON:0000178 denotes blood
T4631 277-288 CL:0000081 denotes blood cells
T4632 297-307 UBERON:0000358 denotes blastocyst
T4633 349-352 PR:000007164 denotes Xpd
T4634 356-359 PR:000007164 denotes Xpd
T4635 370-373 PR:000007164 denotes Xpd
T4636 377-384 SO:0001023 denotes alleles
T4637 464-468 UBERON:0000104 denotes life
T4638 473-476 PR:000007164 denotes Xpd
T4639 491-494 PR:000007164 denotes Xpd
T4640 525-529 NCBITaxon:10088 denotes mice
T4641 531-540 UBERON:0000922 denotes embryonic
T4642 576-579 PR:000007164 denotes Xpd
T4643 583-589 SO:0001023 denotes allele
T4644 599-608 UBERON:0000922 denotes embryonic
T4645 645-648 PR:000007164 denotes Xpd
T4646 666-670 NCBITaxon:10088 denotes mice
T4647 676-679 PR:000007164 denotes Xpd
T4648 683-689 SO:0001023 denotes allele
T4649 765-772 SO:0001023 denotes alleles
T4650 774-777 PR:000007164 denotes Xpd
T4651 781-784 PR:000007164 denotes Xpd
T4652 795-798 PR:000007164 denotes Xpd

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T4700 42-45 PR_EXT:000007164 denotes Xpd
T4701 67-73 GO_EXT:fatality_or_lethality denotes lethal
T4702 74-77 PR_EXT:000007164 denotes Xpd
T4703 87-90 PR_EXT:000007164 denotes Xpd
T4704 94-101 SO_EXT:0001023 denotes alleles
T4705 121-134 GO_EXT:transcription denotes transcription
T4706 171-179 NCBITaxon:1 denotes organism
T4707 204-213 UBERON:0000922 denotes embryonic
T4708 214-223 GO_EXT:fatality_or_lethality denotes lethality
T4710 237-255,283-288 GO:0030154 denotes differentiation of cells
T4711 256-267 GO:0090601 denotes enucleating
T4713 256-267,283-288 CL:0000225 denotes enucleating cells
T4714 268-272 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T4715 277-282 UBERON:0000178 denotes blood
T4716 277-288 CL:0000081 denotes blood cells
T4717 283-288 CL_GO_EXT:cell denotes cells
T4718 297-307 UBERON:0000358 denotes blastocyst
T4719 325-334 GO_EXT:fatality_or_lethality denotes lethality
T4720 349-352 PR_EXT:000007164 denotes Xpd
T4721 356-359 PR_EXT:000007164 denotes Xpd
T4722 370-373 PR_EXT:000007164 denotes Xpd
T4723 377-384 SO_EXT:0001023 denotes alleles
T4724 424-437 GO_EXT:transcription denotes transcription
T4725 464-468 UBERON:0000104 denotes life
T4726 473-476 PR_EXT:000007164 denotes Xpd
T4727 491-494 PR_EXT:000007164 denotes Xpd
T4728 525-529 NCBITaxon:10088 denotes mice
T4729 531-540 UBERON:0000922 denotes embryonic
T4730 541-550 GO_EXT:fatality_or_lethality denotes lethality
T4731 561-568 SO_EXT:sequence_rescue_process denotes rescued
T4732 576-579 PR_EXT:000007164 denotes Xpd
T4733 583-589 SO_EXT:0001023 denotes allele
T4734 599-608 UBERON:0000922 denotes embryonic
T4735 609-618 GO_EXT:fatality_or_lethality denotes lethality
T4736 634-641 SO_EXT:sequence_rescue_process denotes rescued
T4737 645-648 PR_EXT:000007164 denotes Xpd
T4738 666-670 NCBITaxon:10088 denotes mice
T4739 676-679 PR_EXT:000007164 denotes Xpd
T4740 683-689 SO_EXT:0001023 denotes allele
T4741 711-713 SO_EXT:wild_type_entity_or_quality denotes wt
T4742 758-764 GO_EXT:fatality_or_lethality denotes lethal
T4743 765-772 SO_EXT:0001023 denotes alleles
T4744 774-777 PR_EXT:000007164 denotes Xpd
T4745 781-784 PR_EXT:000007164 denotes Xpd
T4746 795-798 PR_EXT:000007164 denotes Xpd