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PMC:1584416 / 20580-21234 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8833 0-1 -LRB- denotes (
T8834 1-2 LS denotes D
T8835 22-30 NN denotes activity
T8836 2-3 -RRB- denotes )
T8837 4-12 NN denotes Incision
T8838 13-21 NN denotes excision
T8839 12-13 HYPH denotes /
T8840 31-33 IN denotes of
T8841 34-46 NNS denotes combinations
T8842 47-49 IN denotes of
T8843 50-57 VBN denotes altered
T8844 64-73 NNS denotes complexes
T8845 58-63 NN denotes TFIIH
T8846 74-76 IN denotes in
T8847 77-78 DT denotes a
T8848 97-105 NN denotes reaction
T8849 79-92 VBN denotes reconstituted
T8850 93-96 NN denotes NER
T8851 105-106 . denotes .
T8852 106-360 sentence denotes Equal amounts of single or mixed populations of recombinant TFIIHs (containing XPD, XPB, p62, p52, His-p44, Flag-p34, cdk7, cyclin H, Mat1, and p8) were mixed with recombinant XPG, XPF/ERCC1, XPC/hHR23B, RPA, and a radiolabelled synthetic NER substrate.
T8853 107-112 JJ denotes Equal
T8854 113-120 NNS denotes amounts
T8855 260-265 VBN denotes mixed
T8856 121-123 IN denotes of
T8857 124-130 JJ denotes single
T8858 140-151 NNS denotes populations
T8859 131-133 CC denotes or
T8860 134-139 JJ denotes mixed
T8861 152-154 IN denotes of
T8862 155-166 JJ denotes recombinant
T8863 167-173 NNS denotes TFIIHs
T8864 174-175 -LRB- denotes (
T8865 175-185 VBG denotes containing
T8866 186-189 NN denotes XPD
T8867 189-191 , denotes ,
T8868 191-194 NN denotes XPB
T8869 194-196 , denotes ,
T8870 196-199 NN denotes p62
T8871 199-201 , denotes ,
T8872 201-204 NN denotes p52
T8873 204-206 , denotes ,
T8874 206-209 NN denotes His
T8875 210-213 NN denotes p44
T8876 209-210 HYPH denotes -
T8877 213-215 , denotes ,
T8878 215-219 NN denotes Flag
T8879 220-223 NN denotes p34
T8880 219-220 HYPH denotes -
T8881 223-225 , denotes ,
T8882 225-229 NN denotes cdk7
T8883 229-231 , denotes ,
T8884 231-237 NN denotes cyclin
T8885 238-239 NN denotes H
T8886 239-241 , denotes ,
T8887 241-245 NN denotes Mat1
T8888 245-247 , denotes ,
T8889 247-250 CC denotes and
T8890 251-253 NN denotes p8
T8891 253-254 -RRB- denotes )
T8892 255-259 VBD denotes were
T8893 266-270 IN denotes with
T8894 271-282 JJ denotes recombinant
T8895 283-286 NN denotes XPG
T8896 286-288 , denotes ,
T8897 288-291 NN denotes XPF
T8898 292-297 NN denotes ERCC1
T8899 291-292 HYPH denotes /
T8900 297-299 , denotes ,
T8901 299-302 NN denotes XPC
T8902 303-309 NN denotes hHR23B
T8903 302-303 HYPH denotes /
T8904 309-311 , denotes ,
T8905 311-314 NN denotes RPA
T8906 314-316 , denotes ,
T8907 316-319 CC denotes and
T8908 320-321 DT denotes a
T8909 350-359 NN denotes substrate
T8910 322-335 VBN denotes radiolabelled
T8911 336-345 JJ denotes synthetic
T8912 346-349 NN denotes NER
T8913 359-360 . denotes .
T8914 360-503 sentence denotes The excision products (26–34 nucleotides in length) were visualised at nucleotide resolution on a denaturing polyacrylamide gel as indicated .
T8915 361-364 DT denotes The
T8916 374-382 NNS denotes products
T8917 365-373 NN denotes excision
T8918 418-428 VBN denotes visualised
T8919 383-384 -LRB- denotes (
T8920 390-401 NNS denotes nucleotides
T8921 384-386 CD denotes 26
T8922 387-389 CD denotes 34
T8923 386-387 SYM denotes –
T8924 402-404 IN denotes in
T8925 405-411 NN denotes length
T8926 411-412 -RRB- denotes )
T8927 413-417 VBD denotes were
T8928 429-431 IN denotes at
T8929 432-442 NN denotes nucleotide
T8930 443-453 NN denotes resolution
T8931 454-456 IN denotes on
T8932 457-458 DT denotes a
T8933 485-488 NN denotes gel
T8934 459-469 VBG denotes denaturing
T8935 470-484 NN denotes polyacrylamide
T8936 489-491 IN denotes as
T8937 492-501 VBN denotes indicated
T8938 502-503 . denotes .
T8939 503-654 sentence denotes Note the weak activity corresponding to each single and combined TFIIH complex (lanes 3–8) relative to the wt (lane 1) and negative controls (lane 2).
T8940 504-508 VB denotes Note
T8941 509-512 DT denotes the
T8942 518-526 NN denotes activity
T8943 513-517 JJ denotes weak
T8944 527-540 VBG denotes corresponding
T8945 541-543 IN denotes to
T8946 544-548 DT denotes each
T8947 575-582 NN denotes complex
T8948 549-555 JJ denotes single
T8949 556-559 CC denotes and
T8950 560-568 VBN denotes combined
T8951 569-574 NN denotes TFIIH
T8952 583-584 -LRB- denotes (
T8953 590-591 CD denotes 3
T8954 584-589 NNS denotes lanes
T8955 591-592 SYM denotes –
T8956 592-593 CD denotes 8
T8957 593-594 -RRB- denotes )
T8958 595-603 JJ denotes relative
T8959 604-606 IN denotes to
T8960 607-610 DT denotes the
T8961 611-613 NN denotes wt
T8962 614-615 -LRB- denotes (
T8963 615-619 NN denotes lane
T8964 620-621 CD denotes 1
T8965 621-622 -RRB- denotes )
T8966 623-626 CC denotes and
T8967 627-635 JJ denotes negative
T8968 636-644 NNS denotes controls
T8969 645-646 -LRB- denotes (
T8970 646-650 NN denotes lane
T8971 651-652 CD denotes 2
T8972 652-653 -RRB- denotes )
T8973 653-654 . denotes .
R5954 T8833 T8834 punct (,D
R5955 T8834 T8835 meta D,activity
R5956 T8836 T8834 punct ),D
R5957 T8837 T8838 compound Incision,excision
R5958 T8838 T8835 compound excision,activity
R5959 T8839 T8838 punct /,excision
R5960 T8840 T8835 prep of,activity
R5961 T8841 T8840 pobj combinations,of
R5962 T8842 T8841 prep of,combinations
R5963 T8843 T8844 amod altered,complexes
R5964 T8844 T8842 pobj complexes,of
R5965 T8845 T8844 compound TFIIH,complexes
R5966 T8846 T8844 prep in,complexes
R5967 T8847 T8848 det a,reaction
R5968 T8848 T8846 pobj reaction,in
R5969 T8849 T8848 amod reconstituted,reaction
R5970 T8850 T8848 compound NER,reaction
R5971 T8851 T8835 punct .,activity
R5972 T8853 T8854 amod Equal,amounts
R5973 T8854 T8855 nsubjpass amounts,mixed
R5974 T8856 T8854 prep of,amounts
R5975 T8857 T8858 amod single,populations
R5976 T8858 T8856 pobj populations,of
R5977 T8859 T8857 cc or,single
R5978 T8860 T8857 conj mixed,single
R5979 T8861 T8858 prep of,populations
R5980 T8862 T8863 amod recombinant,TFIIHs
R5981 T8863 T8861 pobj TFIIHs,of
R5982 T8864 T8858 punct (,populations
R5983 T8865 T8858 acl containing,populations
R5984 T8866 T8865 dobj XPD,containing
R5985 T8867 T8866 punct ", ",XPD
R5986 T8868 T8866 conj XPB,XPD
R5987 T8869 T8868 punct ", ",XPB
R5988 T8870 T8868 conj p62,XPB
R5989 T8871 T8870 punct ", ",p62
R5990 T8872 T8870 conj p52,p62
R5991 T8873 T8872 punct ", ",p52
R5992 T8874 T8875 compound His,p44
R5993 T8875 T8872 conj p44,p52
R5994 T8876 T8875 punct -,p44
R5995 T8877 T8875 punct ", ",p44
R5996 T8878 T8879 compound Flag,p34
R5997 T8879 T8875 conj p34,p44
R5998 T8880 T8879 punct -,p34
R5999 T8881 T8879 punct ", ",p34
R6000 T8882 T8879 conj cdk7,p34
R6001 T8883 T8882 punct ", ",cdk7
R6002 T8884 T8885 compound cyclin,H
R6003 T8885 T8882 conj H,cdk7
R6004 T8886 T8885 punct ", ",H
R6005 T8887 T8885 conj Mat1,H
R6006 T8888 T8887 punct ", ",Mat1
R6007 T8889 T8887 cc and,Mat1
R6008 T8890 T8887 conj p8,Mat1
R6009 T8891 T8855 punct ),mixed
R6010 T8892 T8855 auxpass were,mixed
R6011 T8893 T8855 prep with,mixed
R6012 T8894 T8895 amod recombinant,XPG
R6013 T8895 T8893 pobj XPG,with
R6014 T8896 T8895 punct ", ",XPG
R6015 T8897 T8898 compound XPF,ERCC1
R6016 T8898 T8895 appos ERCC1,XPG
R6017 T8899 T8898 punct /,ERCC1
R6018 T8900 T8895 punct ", ",XPG
R6019 T8901 T8902 compound XPC,hHR23B
R6020 T8902 T8895 appos hHR23B,XPG
R6021 T8903 T8902 punct /,hHR23B
R6022 T8904 T8895 punct ", ",XPG
R6023 T8905 T8895 appos RPA,XPG
R6024 T8906 T8895 punct ", ",XPG
R6025 T8907 T8895 cc and,XPG
R6026 T8908 T8909 det a,substrate
R6027 T8909 T8895 conj substrate,XPG
R6028 T8910 T8909 amod radiolabelled,substrate
R6029 T8911 T8909 amod synthetic,substrate
R6030 T8912 T8909 compound NER,substrate
R6031 T8913 T8855 punct .,mixed
R6032 T8915 T8916 det The,products
R6033 T8916 T8918 nsubjpass products,visualised
R6034 T8917 T8916 compound excision,products
R6035 T8919 T8920 punct (,nucleotides
R6036 T8920 T8916 parataxis nucleotides,products
R6037 T8921 T8922 quantmod 26,34
R6038 T8922 T8920 nummod 34,nucleotides
R6039 T8923 T8922 punct –,34
R6040 T8924 T8920 prep in,nucleotides
R6041 T8925 T8924 pobj length,in
R6042 T8926 T8920 punct ),nucleotides
R6043 T8927 T8918 auxpass were,visualised
R6044 T8928 T8918 prep at,visualised
R6045 T8929 T8930 compound nucleotide,resolution
R6046 T8930 T8928 pobj resolution,at
R6047 T8931 T8918 prep on,visualised
R6048 T8932 T8933 det a,gel
R6049 T8933 T8931 pobj gel,on
R6050 T8934 T8933 amod denaturing,gel
R6051 T8935 T8933 compound polyacrylamide,gel
R6052 T8936 T8937 mark as,indicated
R6053 T8937 T8918 advcl indicated,visualised
R6054 T8938 T8918 punct .,visualised
R6055 T8941 T8942 det the,activity
R6056 T8942 T8940 dobj activity,Note
R6057 T8943 T8942 amod weak,activity
R6058 T8944 T8942 acl corresponding,activity
R6059 T8945 T8944 prep to,corresponding
R6060 T8946 T8947 det each,complex
R6061 T8947 T8945 pobj complex,to
R6062 T8948 T8947 amod single,complex
R6063 T8949 T8948 cc and,single
R6064 T8950 T8948 conj combined,single
R6065 T8951 T8947 compound TFIIH,complex
R6066 T8952 T8953 punct (,3
R6067 T8953 T8947 parataxis 3,complex
R6068 T8954 T8953 nmod lanes,3
R6069 T8955 T8956 punct –,8
R6070 T8956 T8953 prep 8,3
R6071 T8957 T8953 punct ),3
R6072 T8958 T8944 advcl relative,corresponding
R6073 T8959 T8958 prep to,relative
R6074 T8960 T8961 det the,wt
R6075 T8961 T8959 pobj wt,to
R6076 T8962 T8963 punct (,lane
R6077 T8963 T8961 parataxis lane,wt
R6078 T8964 T8963 nummod 1,lane
R6079 T8965 T8963 punct ),lane
R6080 T8966 T8961 cc and,wt
R6081 T8967 T8968 amod negative,controls
R6082 T8968 T8961 conj controls,wt
R6083 T8969 T8970 punct (,lane
R6084 T8970 T8968 parataxis lane,controls
R6085 T8971 T8970 nummod 2,lane
R6086 T8972 T8970 punct ),lane
R6087 T8973 T8940 punct .,Note

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8428 4-12 MOP:0000780 denotes Incision
T8429 58-73 GO:0005675 denotes TFIIH complexes
T8430 93-96 GO:0006289 denotes NER
T8431 167-173 GO:0005675 denotes TFIIHs
T8432 186-189 PR:000007164 denotes XPD
T8433 191-194 PR:000007165 denotes XPB
T8434 196-199 PR:000008317 denotes p62
T8435 201-204 PR:000008320 denotes p52
T8436 210-213 PR:000008318 denotes p44
T8437 220-223 PR:000008319 denotes p34
T8438 225-229 PR:000005265 denotes cdk7
T8439 231-239 PR:000005130 denotes cyclin H
T8440 241-245 PR:000010496 denotes Mat1
T8441 251-253 PR:000008321 denotes p8
T8442 283-286 PR:000007167 denotes XPG
T8443 288-291 PR:000007166 denotes XPF
T8444 292-297 PR:000007163 denotes ERCC1
T8445 299-302 PR:000017494 denotes XPC
T8446 303-309 PR:000013670 denotes hHR23B
T8447 311-314 GO:0005662 denotes RPA
T8448 346-349 GO:0006289 denotes NER
T8449 569-582 GO:0005675 denotes TFIIH complex

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8495 4-12 MOP:0000780 denotes Incision
T8496 13-21 SO_EXT:sequence_deletion_process denotes excision
T8497 50-57 SO_EXT:sequence_alteration_process denotes altered
T8498 58-73 GO:0005675 denotes TFIIH complexes
T8499 93-96 GO:0006289 denotes NER
T8500 155-166 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T8501 167-173 GO:0005675 denotes TFIIHs
T8502 186-189 PR_EXT:000007164 denotes XPD
T8503 191-194 PR_EXT:000007165 denotes XPB
T8504 196-199 PR_EXT:000008317 denotes p62
T8505 201-204 PR_EXT:000008320 denotes p52
T8506 206-209 CHEBI_SO_EXT:histidine denotes His
T8507 210-213 PR_EXT:000008318 denotes p44
T8508 220-223 PR_EXT:000008319 denotes p34
T8509 225-229 PR_EXT:000005265 denotes cdk7
T8510 231-239 PR_EXT:000005130 denotes cyclin H
T8511 241-245 PR_EXT:000010496 denotes Mat1
T8512 251-253 PR_EXT:000008321 denotes p8
T8513 271-282 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T8514 283-286 PR_EXT:000007167 denotes XPG
T8515 288-291 PR_EXT:000007166 denotes XPF
T8516 292-297 PR_EXT:000007163 denotes ERCC1
T8517 299-302 PR_EXT:000017494 denotes XPC
T8518 303-309 PR_EXT:000013670 denotes hHR23B
T8519 311-314 GO:0005662 denotes RPA
T8520 322-335 CHEBI_EXT:radiolabel_process denotes radiolabelled
T8521 346-349 GO:0006289 denotes NER
T8522 365-373 SO_EXT:sequence_deletion_process denotes excision
T8523 390-401 CHEBI_SO_EXT:nucleotide denotes nucleotides
T8524 432-442 CHEBI_SO_EXT:nucleotide denotes nucleotide
T8525 459-469 GO_EXT:macromolecule_denaturation denotes denaturing
T8526 470-484 CHEBI_EXT:polyacrylamide denotes polyacrylamide
T8527 569-582 GO:0005675 denotes TFIIH complex
T8528 611-613 SO_EXT:wild_type_entity_or_quality denotes wt