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PMC:1584416 / 19436-22250 JSONTXT

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Id Subject Object Predicate Lexical cue
T8564 10-15 NN denotes TFIIH
T8565 16-25 NNS denotes Functions
T8566 26-29 CC denotes and
T8567 30-40 NNS denotes Mechanisms
T8568 41-43 IN denotes of
T8569 44-47 NN denotes XPD
T8570 48-58 VBN denotes Associated
T8571 47-48 HYPH denotes -
T8572 67-77 NN denotes Pleiotropy
T8573 59-66 NN denotes Disease
T8574 77-121 sentence denotes (A) Cellular survival after UV irradiation.
T8575 78-79 -LRB- denotes (
T8576 79-80 LS denotes A
T8577 91-99 NN denotes survival
T8578 80-81 -RRB- denotes )
T8579 82-90 JJ denotes Cellular
T8580 100-105 IN denotes after
T8581 106-108 NN denotes UV
T8582 109-120 NN denotes irradiation
T8583 120-121 . denotes .
T8584 121-247 sentence denotes Rescue of hemizygous XpdTTD/KO survival by Xpd†XPCS and Xpd†XP alleles is illustrated by arrows marked A and B, respectively.
T8585 122-128 NN denotes Rescue
T8586 196-207 VBN denotes illustrated
T8587 129-131 IN denotes of
T8588 132-142 JJ denotes hemizygous
T8589 153-161 NN denotes survival
T8590 143-149 NN denotes XpdTTD
T8591 150-152 NN denotes KO
T8592 149-150 HYPH denotes /
T8593 162-164 IN denotes by
T8594 165-173 NN denotes Xpd†XPCS
T8595 185-192 NNS denotes alleles
T8596 174-177 CC denotes and
T8597 178-184 NN denotes Xpd†XP
T8598 193-195 VBZ denotes is
T8599 208-210 IN denotes by
T8600 211-217 NNS denotes arrows
T8601 218-224 VBN denotes marked
T8602 225-226 NN denotes A
T8603 227-230 CC denotes and
T8604 231-232 NN denotes B
T8605 232-234 , denotes ,
T8606 234-246 RB denotes respectively
T8607 246-247 . denotes .
T8608 247-385 sentence denotes UV survival of homozygous XpdXPCS/XPCS cells (asterisk) from the normally expressed viable allele (XpdXPCS) is depicted by a dotted line.
T8609 248-250 NN denotes UV
T8610 251-259 NN denotes survival
T8611 359-367 VBN denotes depicted
T8612 260-262 IN denotes of
T8613 263-273 JJ denotes homozygous
T8614 287-292 NNS denotes cells
T8615 274-281 NN denotes XpdXPCS
T8616 282-286 NN denotes XPCS
T8617 281-282 HYPH denotes /
T8618 293-294 -LRB- denotes (
T8619 294-302 NN denotes asterisk
T8620 302-303 -RRB- denotes )
T8621 304-308 IN denotes from
T8622 309-312 DT denotes the
T8623 339-345 NN denotes allele
T8624 313-321 RB denotes normally
T8625 322-331 VBN denotes expressed
T8626 332-338 JJ denotes viable
T8627 346-347 -LRB- denotes (
T8628 347-354 NN denotes XpdXPCS
T8629 354-355 -RRB- denotes )
T8630 356-358 VBZ denotes is
T8631 368-370 IN denotes by
T8632 371-372 DT denotes a
T8633 380-384 NN denotes line
T8634 373-379 VBN denotes dotted
T8635 384-385 . denotes .
T8636 385-517 sentence denotes Survival curves represent an average of four independent experiments; 1–2 cell lines per genotype were included in each experiment.
T8637 386-394 NN denotes Survival
T8638 395-401 NNS denotes curves
T8639 402-411 VBP denotes represent
T8640 489-497 VBN denotes included
T8641 412-414 DT denotes an
T8642 415-422 NN denotes average
T8643 423-425 IN denotes of
T8644 426-430 CD denotes four
T8645 443-454 NNS denotes experiments
T8646 431-442 JJ denotes independent
T8647 454-455 : denotes ;
T8648 456-457 CD denotes 1
T8649 458-459 CD denotes 2
T8650 457-458 SYM denotes –
T8651 465-470 NNS denotes lines
T8652 460-464 NN denotes cell
T8653 471-474 IN denotes per
T8654 475-483 NN denotes genotype
T8655 484-488 VBD denotes were
T8656 498-500 IN denotes in
T8657 501-505 DT denotes each
T8658 506-516 NN denotes experiment
T8659 516-517 . denotes .
T8660 517-562 sentence denotes Error bars indicate SEM between experiments.
T8661 518-523 NN denotes Error
T8662 524-528 NNS denotes bars
T8663 529-537 VBP denotes indicate
T8664 538-541 NN denotes SEM
T8665 542-549 IN denotes between
T8666 550-561 NNS denotes experiments
T8667 561-562 . denotes .
T8668 562-609 sentence denotes (B) UV-UDS, a measure of global genome repair.
T8669 563-564 -LRB- denotes (
T8670 564-565 LS denotes B
T8671 570-573 NN denotes UDS
T8672 565-566 -RRB- denotes )
T8673 567-569 NN denotes UV
T8674 569-570 HYPH denotes -
T8675 573-575 , denotes ,
T8676 575-576 DT denotes a
T8677 577-584 NN denotes measure
T8678 585-587 IN denotes of
T8679 588-594 JJ denotes global
T8680 602-608 NN denotes repair
T8681 595-601 NN denotes genome
T8682 608-609 . denotes .
T8683 609-778 sentence denotes Number of experiments: n = 15 (XpdTTD/TTD), n = 6 (XpdTTD/KO), n = 4 (XpdTTD/†XPCS ), n = 2 (XpdTTD/†XP ); 1–2 cell lines per genotype were included in each experiment.
T8684 610-616 NN denotes Number
T8685 750-758 VBN denotes included
T8686 617-619 IN denotes of
T8687 620-631 NNS denotes experiments
T8688 631-633 : denotes :
T8689 633-634 NN denotes n
T8690 637-639 CD denotes 15
T8691 635-636 SYM denotes =
T8692 640-641 -LRB- denotes (
T8693 641-647 NN denotes XpdTTD
T8694 647-648 SYM denotes /
T8695 648-651 NN denotes TTD
T8696 651-652 -RRB- denotes )
T8697 652-654 , denotes ,
T8698 654-655 NN denotes n
T8699 658-659 CD denotes 6
T8700 656-657 SYM denotes =
T8701 660-661 -LRB- denotes (
T8702 668-670 NN denotes KO
T8703 661-667 NN denotes XpdTTD
T8704 667-668 HYPH denotes /
T8705 670-671 -RRB- denotes )
T8706 671-673 , denotes ,
T8707 673-674 NN denotes n
T8708 677-678 CD denotes 4
T8709 675-676 SYM denotes =
T8710 679-680 -LRB- denotes (
T8711 687-692 NN denotes †XPCS
T8712 680-686 NN denotes XpdTTD
T8713 686-687 HYPH denotes /
T8714 693-694 -RRB- denotes )
T8715 694-696 , denotes ,
T8716 696-697 NN denotes n
T8717 700-701 CD denotes 2
T8718 698-699 SYM denotes =
T8719 702-703 -LRB- denotes (
T8720 710-713 NN denotes †XP
T8721 703-709 NN denotes XpdTTD
T8722 709-710 HYPH denotes /
T8723 714-715 -RRB- denotes )
T8724 715-716 : denotes ;
T8725 717-718 CD denotes 1
T8726 719-720 CD denotes 2
T8727 718-719 SYM denotes –
T8728 726-731 NNS denotes lines
T8729 721-725 NN denotes cell
T8730 732-735 IN denotes per
T8731 736-744 NN denotes genotype
T8732 745-749 VBD denotes were
T8733 759-761 IN denotes in
T8734 762-766 DT denotes each
T8735 767-777 NN denotes experiment
T8736 777-778 . denotes .
T8737 778-898 sentence denotes The asterisk indicates significant difference with XpdTTD/TTD; crosses indicate significant differences with XpdTTD/KO.
T8738 779-782 DT denotes The
T8739 783-791 NN denotes asterisk
T8740 792-801 VBZ denotes indicates
T8741 850-858 VBP denotes indicate
T8742 802-813 JJ denotes significant
T8743 814-824 NN denotes difference
T8744 825-829 IN denotes with
T8745 830-836 NN denotes XpdTTD
T8746 837-840 NN denotes TTD
T8747 836-837 HYPH denotes /
T8748 840-841 : denotes ;
T8749 842-849 NNS denotes crosses
T8750 859-870 JJ denotes significant
T8751 871-882 NNS denotes differences
T8752 883-887 IN denotes with
T8753 888-894 NN denotes XpdTTD
T8754 895-897 NN denotes KO
T8755 894-895 HYPH denotes /
T8756 897-898 . denotes .
T8757 898-975 sentence denotes (C) UV-RRS, a measure of transcription-coupled repair of UV-induced lesions.
T8758 899-900 -LRB- denotes (
T8759 900-901 LS denotes C
T8760 906-909 NN denotes RRS
T8761 901-902 -RRB- denotes )
T8762 903-905 NN denotes UV
T8763 905-906 HYPH denotes -
T8764 909-911 , denotes ,
T8765 911-912 DT denotes a
T8766 913-920 NN denotes measure
T8767 921-923 IN denotes of
T8768 924-937 NN denotes transcription
T8769 938-945 VBN denotes coupled
T8770 937-938 HYPH denotes -
T8771 946-952 NN denotes repair
T8772 953-955 IN denotes of
T8773 956-958 NN denotes UV
T8774 959-966 VBN denotes induced
T8775 958-959 HYPH denotes -
T8776 967-974 NNS denotes lesions
T8777 974-975 . denotes .
T8778 975-1143 sentence denotes Number of experiments: n = 7 (XpdTTD/TTD), n = 2 (XpdTTD/KO), n = 4 (XpdTTD/†XPCS ), n = 2 (XpdTTD/†XP ); 1–2 cell lines per genotype were included in each experiment.
T8779 976-982 NN denotes Number
T8780 1115-1123 VBN denotes included
T8781 983-985 IN denotes of
T8782 986-997 NNS denotes experiments
T8783 997-999 : denotes :
T8784 999-1000 NN denotes n
T8785 1003-1004 CD denotes 7
T8786 1001-1002 SYM denotes =
T8787 1005-1006 -LRB- denotes (
T8788 1013-1016 NN denotes TTD
T8789 1006-1012 NN denotes XpdTTD
T8790 1012-1013 HYPH denotes /
T8791 1016-1017 -RRB- denotes )
T8792 1017-1019 , denotes ,
T8793 1019-1020 NN denotes n
T8794 1023-1024 CD denotes 2
T8795 1021-1022 SYM denotes =
T8796 1025-1026 -LRB- denotes (
T8797 1033-1035 NN denotes KO
T8798 1026-1032 NN denotes XpdTTD
T8799 1032-1033 HYPH denotes /
T8800 1035-1036 -RRB- denotes )
T8801 1036-1038 , denotes ,
T8802 1038-1039 NN denotes n
T8803 1042-1043 CD denotes 4
T8804 1040-1041 SYM denotes =
T8805 1044-1045 -LRB- denotes (
T8806 1052-1057 NN denotes †XPCS
T8807 1045-1051 NN denotes XpdTTD
T8808 1051-1052 HYPH denotes /
T8809 1058-1059 -RRB- denotes )
T8810 1059-1061 , denotes ,
T8811 1061-1062 NN denotes n
T8812 1065-1066 CD denotes 2
T8813 1063-1064 SYM denotes =
T8814 1067-1068 -LRB- denotes (
T8815 1075-1078 NN denotes †XP
T8816 1068-1074 NN denotes XpdTTD
T8817 1074-1075 HYPH denotes /
T8818 1079-1080 -RRB- denotes )
T8819 1080-1081 : denotes ;
T8820 1082-1083 CD denotes 1
T8821 1084-1085 CD denotes 2
T8822 1083-1084 SYM denotes –
T8823 1091-1096 NNS denotes lines
T8824 1086-1090 NN denotes cell
T8825 1097-1100 IN denotes per
T8826 1101-1109 NN denotes genotype
T8827 1110-1114 VBD denotes were
T8828 1124-1126 IN denotes in
T8829 1127-1131 DT denotes each
T8830 1132-1142 NN denotes experiment
T8831 1142-1143 . denotes .
T8832 1143-1250 sentence denotes (D) Incision/excision activity of combinations of altered TFIIH complexes in a reconstituted NER reaction.
T8833 1144-1145 -LRB- denotes (
T8834 1145-1146 LS denotes D
T8835 1166-1174 NN denotes activity
T8836 1146-1147 -RRB- denotes )
T8837 1148-1156 NN denotes Incision
T8838 1157-1165 NN denotes excision
T8839 1156-1157 HYPH denotes /
T8840 1175-1177 IN denotes of
T8841 1178-1190 NNS denotes combinations
T8842 1191-1193 IN denotes of
T8843 1194-1201 VBN denotes altered
T8844 1208-1217 NNS denotes complexes
T8845 1202-1207 NN denotes TFIIH
T8846 1218-1220 IN denotes in
T8847 1221-1222 DT denotes a
T8848 1241-1249 NN denotes reaction
T8849 1223-1236 VBN denotes reconstituted
T8850 1237-1240 NN denotes NER
T8851 1249-1250 . denotes .
T8852 1250-1504 sentence denotes Equal amounts of single or mixed populations of recombinant TFIIHs (containing XPD, XPB, p62, p52, His-p44, Flag-p34, cdk7, cyclin H, Mat1, and p8) were mixed with recombinant XPG, XPF/ERCC1, XPC/hHR23B, RPA, and a radiolabelled synthetic NER substrate.
T8853 1251-1256 JJ denotes Equal
T8854 1257-1264 NNS denotes amounts
T8855 1404-1409 VBN denotes mixed
T8856 1265-1267 IN denotes of
T8857 1268-1274 JJ denotes single
T8858 1284-1295 NNS denotes populations
T8859 1275-1277 CC denotes or
T8860 1278-1283 JJ denotes mixed
T8861 1296-1298 IN denotes of
T8862 1299-1310 JJ denotes recombinant
T8863 1311-1317 NNS denotes TFIIHs
T8864 1318-1319 -LRB- denotes (
T8865 1319-1329 VBG denotes containing
T8866 1330-1333 NN denotes XPD
T8867 1333-1335 , denotes ,
T8868 1335-1338 NN denotes XPB
T8869 1338-1340 , denotes ,
T8870 1340-1343 NN denotes p62
T8871 1343-1345 , denotes ,
T8872 1345-1348 NN denotes p52
T8873 1348-1350 , denotes ,
T8874 1350-1353 NN denotes His
T8875 1354-1357 NN denotes p44
T8876 1353-1354 HYPH denotes -
T8877 1357-1359 , denotes ,
T8878 1359-1363 NN denotes Flag
T8879 1364-1367 NN denotes p34
T8880 1363-1364 HYPH denotes -
T8881 1367-1369 , denotes ,
T8882 1369-1373 NN denotes cdk7
T8883 1373-1375 , denotes ,
T8884 1375-1381 NN denotes cyclin
T8885 1382-1383 NN denotes H
T8886 1383-1385 , denotes ,
T8887 1385-1389 NN denotes Mat1
T8888 1389-1391 , denotes ,
T8889 1391-1394 CC denotes and
T8890 1395-1397 NN denotes p8
T8891 1397-1398 -RRB- denotes )
T8892 1399-1403 VBD denotes were
T8893 1410-1414 IN denotes with
T8894 1415-1426 JJ denotes recombinant
T8895 1427-1430 NN denotes XPG
T8896 1430-1432 , denotes ,
T8897 1432-1435 NN denotes XPF
T8898 1436-1441 NN denotes ERCC1
T8899 1435-1436 HYPH denotes /
T8900 1441-1443 , denotes ,
T8901 1443-1446 NN denotes XPC
T8902 1447-1453 NN denotes hHR23B
T8903 1446-1447 HYPH denotes /
T8904 1453-1455 , denotes ,
T8905 1455-1458 NN denotes RPA
T8906 1458-1460 , denotes ,
T8907 1460-1463 CC denotes and
T8908 1464-1465 DT denotes a
T8909 1494-1503 NN denotes substrate
T8910 1466-1479 VBN denotes radiolabelled
T8911 1480-1489 JJ denotes synthetic
T8912 1490-1493 NN denotes NER
T8913 1503-1504 . denotes .
T8914 1504-1647 sentence denotes The excision products (26–34 nucleotides in length) were visualised at nucleotide resolution on a denaturing polyacrylamide gel as indicated .
T8915 1505-1508 DT denotes The
T8916 1518-1526 NNS denotes products
T8917 1509-1517 NN denotes excision
T8918 1562-1572 VBN denotes visualised
T8919 1527-1528 -LRB- denotes (
T8920 1534-1545 NNS denotes nucleotides
T8921 1528-1530 CD denotes 26
T8922 1531-1533 CD denotes 34
T8923 1530-1531 SYM denotes –
T8924 1546-1548 IN denotes in
T8925 1549-1555 NN denotes length
T8926 1555-1556 -RRB- denotes )
T8927 1557-1561 VBD denotes were
T8928 1573-1575 IN denotes at
T8929 1576-1586 NN denotes nucleotide
T8930 1587-1597 NN denotes resolution
T8931 1598-1600 IN denotes on
T8932 1601-1602 DT denotes a
T8933 1629-1632 NN denotes gel
T8934 1603-1613 VBG denotes denaturing
T8935 1614-1628 NN denotes polyacrylamide
T8936 1633-1635 IN denotes as
T8937 1636-1645 VBN denotes indicated
T8938 1646-1647 . denotes .
T8939 1647-1798 sentence denotes Note the weak activity corresponding to each single and combined TFIIH complex (lanes 3–8) relative to the wt (lane 1) and negative controls (lane 2).
T8940 1648-1652 VB denotes Note
T8941 1653-1656 DT denotes the
T8942 1662-1670 NN denotes activity
T8943 1657-1661 JJ denotes weak
T8944 1671-1684 VBG denotes corresponding
T8945 1685-1687 IN denotes to
T8946 1688-1692 DT denotes each
T8947 1719-1726 NN denotes complex
T8948 1693-1699 JJ denotes single
T8949 1700-1703 CC denotes and
T8950 1704-1712 VBN denotes combined
T8951 1713-1718 NN denotes TFIIH
T8952 1727-1728 -LRB- denotes (
T8953 1734-1735 CD denotes 3
T8954 1728-1733 NNS denotes lanes
T8955 1735-1736 SYM denotes –
T8956 1736-1737 CD denotes 8
T8957 1737-1738 -RRB- denotes )
T8958 1739-1747 JJ denotes relative
T8959 1748-1750 IN denotes to
T8960 1751-1754 DT denotes the
T8961 1755-1757 NN denotes wt
T8962 1758-1759 -LRB- denotes (
T8963 1759-1763 NN denotes lane
T8964 1764-1765 CD denotes 1
T8965 1765-1766 -RRB- denotes )
T8966 1767-1770 CC denotes and
T8967 1771-1779 JJ denotes negative
T8968 1780-1788 NNS denotes controls
T8969 1789-1790 -LRB- denotes (
T8970 1790-1794 NN denotes lane
T8971 1795-1796 CD denotes 2
T8972 1796-1797 -RRB- denotes )
T8973 1797-1798 . denotes .
T8974 1798-2011 sentence denotes (E) Xpd dose-dependent reduction of TFIIH in homozygous XpdTTD/TTD, hemizygous XpdTTD/KO, and compound heterozygous XpdTTD/†XPCS and XpdTTD/†XP cells by comparative immunofluorescence of the p62 subunit of TFIIH.
T8975 1799-1800 -LRB- denotes (
T8976 1800-1801 LS denotes E
T8977 1822-1831 NN denotes reduction
T8978 1801-1802 -RRB- denotes )
T8979 1803-1806 NN denotes Xpd
T8980 1807-1811 NN denotes dose
T8981 1812-1821 JJ denotes dependent
T8982 1811-1812 HYPH denotes -
T8983 1832-1834 IN denotes of
T8984 1835-1840 NN denotes TFIIH
T8985 1841-1843 IN denotes in
T8986 1844-1854 JJ denotes homozygous
T8987 1862-1865 NN denotes TTD
T8988 1855-1861 NN denotes XpdTTD
T8989 1861-1862 HYPH denotes /
T8990 1943-1948 NNS denotes cells
T8991 1865-1867 , denotes ,
T8992 1867-1877 JJ denotes hemizygous
T8993 1885-1887 NN denotes KO
T8994 1878-1884 NN denotes XpdTTD
T8995 1884-1885 HYPH denotes /
T8996 1887-1889 , denotes ,
T8997 1889-1892 CC denotes and
T8998 1893-1901 NN denotes compound
T8999 1922-1927 NN denotes †XPCS
T9000 1902-1914 JJ denotes heterozygous
T9001 1915-1921 NN denotes XpdTTD
T9002 1921-1922 HYPH denotes /
T9003 1928-1931 CC denotes and
T9004 1932-1938 NN denotes XpdTTD
T9005 1939-1942 NN denotes †XP
T9006 1938-1939 HYPH denotes /
T9007 1949-1951 IN denotes by
T9008 1952-1963 JJ denotes comparative
T9009 1964-1982 NN denotes immunofluorescence
T9010 1983-1985 IN denotes of
T9011 1986-1989 DT denotes the
T9012 1994-2001 NN denotes subunit
T9013 1990-1993 NN denotes p62
T9014 2002-2004 IN denotes of
T9015 2005-2010 NN denotes TFIIH
T9016 2010-2011 . denotes .
T9017 2011-2429 sentence denotes Roman numerals represent different microscopic slides and Arabic numerals different cell lines labelled as follows: (I) wt cells (1) labelled with 2-μm beads, XpdTTD/TTD cells (2) with 0.79-μm beads, and XpdTTD/KO cells (3) with no beads; (II) wt cells (1) labelled with 0.79-μm beads and XpdTTD/†XPCS cells (4) with no beads; and (III) wt cells (1) labelled with 0.79-μm beads and XpdTTD/†XP cells (5) with no beads.
T9018 2012-2017 JJ denotes Roman
T9019 2018-2026 NNS denotes numerals
T9020 2027-2036 VBP denotes represent
T9021 2037-2046 JJ denotes different
T9022 2059-2065 NNS denotes slides
T9023 2047-2058 JJ denotes microscopic
T9024 2066-2069 CC denotes and
T9025 2070-2076 JJ denotes Arabic
T9026 2077-2085 NNS denotes numerals
T9027 2101-2106 NNS denotes lines
T9028 2086-2095 JJ denotes different
T9029 2096-2100 NN denotes cell
T9030 2107-2115 VBN denotes labelled
T9031 2116-2118 IN denotes as
T9032 2119-2126 VBZ denotes follows
T9033 2126-2128 : denotes :
T9034 2128-2129 -LRB- denotes (
T9035 2129-2130 LS denotes I
T9036 2135-2140 NNS denotes cells
T9037 2130-2131 -RRB- denotes )
T9038 2132-2134 NN denotes wt
T9039 2141-2142 -LRB- denotes (
T9040 2142-2143 CD denotes 1
T9041 2143-2144 -RRB- denotes )
T9042 2145-2153 VBN denotes labelled
T9043 2154-2158 IN denotes with
T9044 2159-2160 CD denotes 2
T9045 2161-2163 NN denotes μm
T9046 2160-2161 HYPH denotes -
T9047 2164-2169 NNS denotes beads
T9048 2169-2171 , denotes ,
T9049 2171-2177 NN denotes XpdTTD
T9050 2178-2181 NN denotes TTD
T9051 2177-2178 HYPH denotes /
T9052 2182-2187 NNS denotes cells
T9053 2188-2189 -LRB- denotes (
T9054 2189-2190 CD denotes 2
T9055 2190-2191 -RRB- denotes )
T9056 2192-2196 IN denotes with
T9057 2197-2201 CD denotes 0.79
T9058 2202-2204 NN denotes μm
T9059 2201-2202 HYPH denotes -
T9060 2205-2210 NNS denotes beads
T9061 2210-2212 , denotes ,
T9062 2212-2215 CC denotes and
T9063 2216-2222 NN denotes XpdTTD
T9064 2223-2225 NN denotes KO
T9065 2222-2223 HYPH denotes /
T9066 2226-2231 NNS denotes cells
T9067 2232-2233 -LRB- denotes (
T9068 2233-2234 CD denotes 3
T9069 2234-2235 -RRB- denotes )
T9070 2236-2240 IN denotes with
T9071 2241-2243 DT denotes no
T9072 2244-2249 NNS denotes beads
T9073 2249-2250 : denotes ;
T9074 2251-2252 -LRB- denotes (
T9075 2252-2254 LS denotes II
T9076 2259-2264 NNS denotes cells
T9077 2254-2255 -RRB- denotes )
T9078 2256-2258 NN denotes wt
T9079 2265-2266 -LRB- denotes (
T9080 2266-2267 CD denotes 1
T9081 2267-2268 -RRB- denotes )
T9082 2269-2277 VBN denotes labelled
T9083 2278-2282 IN denotes with
T9084 2283-2287 CD denotes 0.79
T9085 2288-2290 NN denotes μm
T9086 2287-2288 HYPH denotes -
T9087 2291-2296 NNS denotes beads
T9088 2297-2300 CC denotes and
T9089 2301-2307 NN denotes XpdTTD
T9090 2308-2313 NN denotes †XPCS
T9091 2307-2308 HYPH denotes /
T9092 2314-2319 NNS denotes cells
T9093 2320-2321 -LRB- denotes (
T9094 2321-2322 CD denotes 4
T9095 2322-2323 -RRB- denotes )
T9096 2324-2328 IN denotes with
T9097 2329-2331 DT denotes no
T9098 2332-2337 NNS denotes beads
T9099 2337-2338 : denotes ;
T9100 2339-2342 CC denotes and
T9101 2343-2344 -LRB- denotes (
T9102 2344-2347 LS denotes III
T9103 2352-2357 NNS denotes cells
T9104 2347-2348 -RRB- denotes )
T9105 2349-2351 NN denotes wt
T9106 2358-2359 -LRB- denotes (
T9107 2359-2360 CD denotes 1
T9108 2360-2361 -RRB- denotes )
T9109 2362-2370 VBN denotes labelled
T9110 2371-2375 IN denotes with
T9111 2376-2380 CD denotes 0.79
T9112 2381-2383 NN denotes μm
T9113 2380-2381 HYPH denotes -
T9114 2384-2389 NNS denotes beads
T9115 2390-2393 CC denotes and
T9116 2394-2400 NN denotes XpdTTD
T9117 2401-2404 NN denotes †XP
T9118 2400-2401 HYPH denotes /
T9119 2405-2410 NNS denotes cells
T9120 2411-2412 -LRB- denotes (
T9121 2412-2413 CD denotes 5
T9122 2413-2414 -RRB- denotes )
T9123 2415-2419 IN denotes with
T9124 2420-2422 DT denotes no
T9125 2423-2428 NNS denotes beads
T9126 2428-2429 . denotes .
T9127 2429-2548 sentence denotes (F) Quantification of immunofluorescent signal from at least 50 nuclei per cell line and 2–6 experiments per genotype.
T9128 2430-2431 -LRB- denotes (
T9129 2431-2432 LS denotes F
T9130 2434-2448 NN denotes Quantification
T9131 2432-2433 -RRB- denotes )
T9132 2449-2451 IN denotes of
T9133 2452-2469 JJ denotes immunofluorescent
T9134 2470-2476 NN denotes signal
T9135 2477-2481 IN denotes from
T9136 2482-2484 RB denotes at
T9137 2491-2493 CD denotes 50
T9138 2485-2490 RBS denotes least
T9139 2494-2500 NNS denotes nuclei
T9140 2501-2504 IN denotes per
T9141 2505-2509 NN denotes cell
T9142 2510-2514 NN denotes line
T9143 2515-2518 CC denotes and
T9144 2519-2520 CD denotes 2
T9145 2521-2522 CD denotes 6
T9146 2520-2521 SYM denotes –
T9147 2523-2534 NNS denotes experiments
T9148 2535-2538 IN denotes per
T9149 2539-2547 NN denotes genotype
T9150 2547-2548 . denotes .
T9151 2548-2659 sentence denotes Bars representing cells analysed on the same microscopic slide are depicted side by side, with wt set at 100%.
T9152 2549-2553 NNS denotes Bars
T9153 2616-2624 VBN denotes depicted
T9154 2554-2566 VBG denotes representing
T9155 2567-2572 NNS denotes cells
T9156 2573-2581 VBN denotes analysed
T9157 2582-2584 IN denotes on
T9158 2585-2588 DT denotes the
T9159 2606-2611 NN denotes slide
T9160 2589-2593 JJ denotes same
T9161 2594-2605 JJ denotes microscopic
T9162 2612-2615 VBP denotes are
T9163 2625-2629 NN denotes side
T9164 2630-2632 IN denotes by
T9165 2633-2637 NN denotes side
T9166 2637-2639 , denotes ,
T9167 2639-2643 IN denotes with
T9168 2644-2646 NN denotes wt
T9169 2647-2650 VBN denotes set
T9170 2651-2653 IN denotes at
T9171 2654-2657 CD denotes 100
T9172 2657-2658 NN denotes %
T9173 2658-2659 . denotes .
T9174 2659-2814 sentence denotes The p-value indicates minimum significant difference between wt and the indicated cell lines analysed on the same microscopic slide within one experiment.
T9175 2660-2663 DT denotes The
T9176 2666-2671 NN denotes value
T9177 2664-2665 NN denotes p
T9178 2665-2666 HYPH denotes -
T9179 2672-2681 VBZ denotes indicates
T9180 2682-2689 JJ denotes minimum
T9181 2702-2712 NN denotes difference
T9182 2690-2701 JJ denotes significant
T9183 2713-2720 IN denotes between
T9184 2721-2723 NN denotes wt
T9185 2724-2727 CC denotes and
T9186 2728-2731 DT denotes the
T9187 2747-2752 NNS denotes lines
T9188 2732-2741 VBN denotes indicated
T9189 2742-2746 NN denotes cell
T9190 2753-2761 VBN denotes analysed
T9191 2762-2764 IN denotes on
T9192 2765-2768 DT denotes the
T9193 2786-2791 NN denotes slide
T9194 2769-2773 JJ denotes same
T9195 2774-2785 JJ denotes microscopic
T9196 2792-2798 IN denotes within
T9197 2799-2802 CD denotes one
T9198 2803-2813 NN denotes experiment
T9199 2813-2814 . denotes .
R5707 T8564 T8565 compound TFIIH,Functions
R5708 T8566 T8565 cc and,Functions
R5709 T8567 T8565 conj Mechanisms,Functions
R5710 T8568 T8567 prep of,Mechanisms
R5711 T8569 T8570 npadvmod XPD,Associated
R5712 T8570 T8572 amod Associated,Pleiotropy
R5713 T8571 T8570 punct -,Associated
R5714 T8572 T8568 pobj Pleiotropy,of
R5715 T8573 T8572 compound Disease,Pleiotropy
R5716 T8575 T8576 punct (,A
R5717 T8576 T8577 meta A,survival
R5718 T8578 T8576 punct ),A
R5719 T8579 T8577 amod Cellular,survival
R5720 T8580 T8577 prep after,survival
R5721 T8581 T8582 compound UV,irradiation
R5722 T8582 T8580 pobj irradiation,after
R5723 T8583 T8577 punct .,survival
R5724 T8585 T8586 nsubjpass Rescue,illustrated
R5725 T8587 T8585 prep of,Rescue
R5726 T8588 T8589 amod hemizygous,survival
R5727 T8589 T8587 pobj survival,of
R5728 T8590 T8591 compound XpdTTD,KO
R5729 T8591 T8589 compound KO,survival
R5730 T8592 T8591 punct /,KO
R5731 T8593 T8585 prep by,Rescue
R5732 T8594 T8595 nmod Xpd†XPCS,alleles
R5733 T8595 T8593 pobj alleles,by
R5734 T8596 T8594 cc and,Xpd†XPCS
R5735 T8597 T8594 conj Xpd†XP,Xpd†XPCS
R5736 T8598 T8586 auxpass is,illustrated
R5737 T8599 T8586 agent by,illustrated
R5738 T8600 T8599 pobj arrows,by
R5739 T8601 T8600 acl marked,arrows
R5740 T8602 T8601 oprd A,marked
R5741 T8603 T8602 cc and,A
R5742 T8604 T8602 conj B,A
R5743 T8605 T8601 punct ", ",marked
R5744 T8606 T8601 advmod respectively,marked
R5745 T8607 T8586 punct .,illustrated
R5746 T8609 T8610 compound UV,survival
R5747 T8610 T8611 nsubjpass survival,depicted
R5748 T8612 T8610 prep of,survival
R5749 T8613 T8614 amod homozygous,cells
R5750 T8614 T8612 pobj cells,of
R5751 T8615 T8616 compound XpdXPCS,XPCS
R5752 T8616 T8614 compound XPCS,cells
R5753 T8617 T8616 punct /,XPCS
R5754 T8618 T8619 punct (,asterisk
R5755 T8619 T8614 parataxis asterisk,cells
R5756 T8620 T8619 punct ),asterisk
R5757 T8621 T8614 prep from,cells
R5758 T8622 T8623 det the,allele
R5759 T8623 T8621 pobj allele,from
R5760 T8624 T8625 advmod normally,expressed
R5761 T8625 T8623 amod expressed,allele
R5762 T8626 T8623 amod viable,allele
R5763 T8627 T8628 punct (,XpdXPCS
R5764 T8628 T8623 parataxis XpdXPCS,allele
R5765 T8629 T8628 punct ),XpdXPCS
R5766 T8630 T8611 auxpass is,depicted
R5767 T8631 T8611 prep by,depicted
R5768 T8632 T8633 det a,line
R5769 T8633 T8631 pobj line,by
R5770 T8634 T8633 amod dotted,line
R5771 T8635 T8611 punct .,depicted
R5772 T8637 T8638 compound Survival,curves
R5773 T8638 T8639 nsubj curves,represent
R5774 T8639 T8640 ccomp represent,included
R5775 T8641 T8642 det an,average
R5776 T8642 T8639 dobj average,represent
R5777 T8643 T8642 prep of,average
R5778 T8644 T8645 nummod four,experiments
R5779 T8645 T8643 pobj experiments,of
R5780 T8646 T8645 amod independent,experiments
R5781 T8647 T8640 punct ;,included
R5782 T8648 T8649 quantmod 1,2
R5783 T8649 T8651 nummod 2,lines
R5784 T8650 T8649 punct –,2
R5785 T8651 T8640 nsubjpass lines,included
R5786 T8652 T8651 compound cell,lines
R5787 T8653 T8651 prep per,lines
R5788 T8654 T8653 pobj genotype,per
R5789 T8655 T8640 auxpass were,included
R5790 T8656 T8640 prep in,included
R5791 T8657 T8658 det each,experiment
R5792 T8658 T8656 pobj experiment,in
R5793 T8659 T8640 punct .,included
R5794 T8661 T8662 compound Error,bars
R5795 T8662 T8663 nsubj bars,indicate
R5796 T8664 T8663 dobj SEM,indicate
R5797 T8665 T8664 prep between,SEM
R5798 T8666 T8665 pobj experiments,between
R5799 T8667 T8663 punct .,indicate
R5800 T8669 T8670 punct (,B
R5801 T8670 T8671 meta B,UDS
R5802 T8672 T8670 punct ),B
R5803 T8673 T8671 compound UV,UDS
R5804 T8674 T8671 punct -,UDS
R5805 T8675 T8671 punct ", ",UDS
R5806 T8676 T8677 det a,measure
R5807 T8677 T8671 appos measure,UDS
R5808 T8678 T8677 prep of,measure
R5809 T8679 T8680 amod global,repair
R5810 T8680 T8678 pobj repair,of
R5811 T8681 T8680 compound genome,repair
R5812 T8682 T8671 punct .,UDS
R5813 T8684 T8685 dep Number,included
R5814 T8686 T8684 prep of,Number
R5815 T8687 T8686 pobj experiments,of
R5816 T8688 T8685 punct : ,included
R5817 T8689 T8690 nsubj n,15
R5818 T8690 T8685 ccomp 15,included
R5819 T8691 T8690 punct =,15
R5820 T8692 T8693 punct (,XpdTTD
R5821 T8693 T8690 parataxis XpdTTD,15
R5822 T8694 T8693 punct /,XpdTTD
R5823 T8695 T8693 dep TTD,XpdTTD
R5824 T8696 T8693 punct ),XpdTTD
R5825 T8697 T8685 punct ", ",included
R5826 T8698 T8699 nsubj n,6
R5827 T8699 T8685 ccomp 6,included
R5828 T8700 T8699 punct =,6
R5829 T8701 T8702 punct (,KO
R5830 T8702 T8699 parataxis KO,6
R5831 T8703 T8702 compound XpdTTD,KO
R5832 T8704 T8702 punct /,KO
R5833 T8705 T8702 punct ),KO
R5834 T8706 T8685 punct ", ",included
R5835 T8707 T8708 nsubj n,4
R5836 T8708 T8685 ccomp 4,included
R5837 T8709 T8708 punct =,4
R5838 T8710 T8711 punct (,†XPCS
R5839 T8711 T8708 parataxis †XPCS,4
R5840 T8712 T8711 compound XpdTTD,†XPCS
R5841 T8713 T8711 punct /,†XPCS
R5842 T8714 T8711 punct ),†XPCS
R5843 T8715 T8685 punct ", ",included
R5844 T8716 T8717 nsubj n,2
R5845 T8717 T8685 ccomp 2,included
R5846 T8718 T8717 punct =,2
R5847 T8719 T8720 punct (,†XP
R5848 T8720 T8717 parataxis †XP,2
R5849 T8721 T8720 compound XpdTTD,†XP
R5850 T8722 T8720 punct /,†XP
R5851 T8723 T8720 punct ),†XP
R5852 T8724 T8685 punct ;,included
R5853 T8725 T8726 quantmod 1,2
R5854 T8726 T8728 nummod 2,lines
R5855 T8727 T8726 punct –,2
R5856 T8728 T8685 nsubjpass lines,included
R5857 T8729 T8728 compound cell,lines
R5858 T8730 T8728 prep per,lines
R5859 T8731 T8730 pobj genotype,per
R5860 T8732 T8685 auxpass were,included
R5861 T8733 T8685 prep in,included
R5862 T8734 T8735 det each,experiment
R5863 T8735 T8733 pobj experiment,in
R5864 T8736 T8685 punct .,included
R5865 T8738 T8739 det The,asterisk
R5866 T8739 T8740 nsubj asterisk,indicates
R5867 T8740 T8741 ccomp indicates,indicate
R5868 T8742 T8743 amod significant,difference
R5869 T8743 T8740 dobj difference,indicates
R5870 T8744 T8743 prep with,difference
R5871 T8745 T8746 compound XpdTTD,TTD
R5872 T8746 T8744 pobj TTD,with
R5873 T8747 T8746 punct /,TTD
R5874 T8748 T8741 punct ;,indicate
R5875 T8749 T8741 nsubj crosses,indicate
R5876 T8750 T8751 amod significant,differences
R5877 T8751 T8741 dobj differences,indicate
R5878 T8752 T8751 prep with,differences
R5879 T8753 T8754 compound XpdTTD,KO
R5880 T8754 T8752 pobj KO,with
R5881 T8755 T8754 punct /,KO
R5882 T8756 T8741 punct .,indicate
R5883 T8758 T8759 punct (,C
R5884 T8759 T8760 meta C,RRS
R5885 T8761 T8759 punct ),C
R5886 T8762 T8760 compound UV,RRS
R5887 T8763 T8760 punct -,RRS
R5888 T8764 T8760 punct ", ",RRS
R5889 T8765 T8766 det a,measure
R5890 T8766 T8760 appos measure,RRS
R5891 T8767 T8766 prep of,measure
R5892 T8768 T8769 npadvmod transcription,coupled
R5893 T8769 T8771 amod coupled,repair
R5894 T8770 T8769 punct -,coupled
R5895 T8771 T8767 pobj repair,of
R5896 T8772 T8771 prep of,repair
R5897 T8773 T8774 npadvmod UV,induced
R5898 T8774 T8776 amod induced,lesions
R5899 T8775 T8774 punct -,induced
R5900 T8776 T8772 pobj lesions,of
R5901 T8777 T8760 punct .,RRS
R5902 T8779 T8780 dep Number,included
R5903 T8781 T8779 prep of,Number
R5904 T8782 T8781 pobj experiments,of
R5905 T8783 T8780 punct : ,included
R5906 T8784 T8785 nsubj n,7
R5907 T8785 T8780 ccomp 7,included
R5908 T8786 T8785 punct =,7
R5909 T8787 T8788 punct (,TTD
R5910 T8788 T8785 parataxis TTD,7
R5911 T8789 T8788 compound XpdTTD,TTD
R5912 T8790 T8788 punct /,TTD
R5913 T8791 T8788 punct ),TTD
R5914 T8792 T8780 punct ", ",included
R5915 T8793 T8794 nsubj n,2
R5916 T8794 T8780 ccomp 2,included
R5917 T8795 T8794 punct =,2
R5918 T8796 T8797 punct (,KO
R5919 T8797 T8794 parataxis KO,2
R5920 T8798 T8797 compound XpdTTD,KO
R5921 T8799 T8797 punct /,KO
R5922 T8800 T8797 punct ),KO
R5923 T8801 T8780 punct ", ",included
R5924 T8802 T8803 nsubj n,4
R5925 T8803 T8780 ccomp 4,included
R5926 T8804 T8803 punct =,4
R5927 T8805 T8806 punct (,†XPCS
R5928 T8806 T8803 parataxis †XPCS,4
R5929 T8807 T8806 compound XpdTTD,†XPCS
R5930 T8808 T8806 punct /,†XPCS
R5931 T8809 T8806 punct ),†XPCS
R5932 T8810 T8780 punct ", ",included
R5933 T8811 T8812 nsubj n,2
R5934 T8812 T8780 ccomp 2,included
R5935 T8813 T8812 punct =,2
R5936 T8814 T8815 punct (,†XP
R5937 T8815 T8812 parataxis †XP,2
R5938 T8816 T8815 compound XpdTTD,†XP
R5939 T8817 T8815 punct /,†XP
R5940 T8818 T8815 punct ),†XP
R5941 T8819 T8780 punct ;,included
R5942 T8820 T8821 quantmod 1,2
R5943 T8821 T8823 nummod 2,lines
R5944 T8822 T8821 punct –,2
R5945 T8823 T8780 nsubjpass lines,included
R5946 T8824 T8823 compound cell,lines
R5947 T8825 T8823 prep per,lines
R5948 T8826 T8825 pobj genotype,per
R5949 T8827 T8780 auxpass were,included
R5950 T8828 T8780 prep in,included
R5951 T8829 T8830 det each,experiment
R5952 T8830 T8828 pobj experiment,in
R5953 T8831 T8780 punct .,included
R5954 T8833 T8834 punct (,D
R5955 T8834 T8835 meta D,activity
R5956 T8836 T8834 punct ),D
R5957 T8837 T8838 compound Incision,excision
R5958 T8838 T8835 compound excision,activity
R5959 T8839 T8838 punct /,excision
R5960 T8840 T8835 prep of,activity
R5961 T8841 T8840 pobj combinations,of
R5962 T8842 T8841 prep of,combinations
R5963 T8843 T8844 amod altered,complexes
R5964 T8844 T8842 pobj complexes,of
R5965 T8845 T8844 compound TFIIH,complexes
R5966 T8846 T8844 prep in,complexes
R5967 T8847 T8848 det a,reaction
R5968 T8848 T8846 pobj reaction,in
R5969 T8849 T8848 amod reconstituted,reaction
R5970 T8850 T8848 compound NER,reaction
R5971 T8851 T8835 punct .,activity
R5972 T8853 T8854 amod Equal,amounts
R5973 T8854 T8855 nsubjpass amounts,mixed
R5974 T8856 T8854 prep of,amounts
R5975 T8857 T8858 amod single,populations
R5976 T8858 T8856 pobj populations,of
R5977 T8859 T8857 cc or,single
R5978 T8860 T8857 conj mixed,single
R5979 T8861 T8858 prep of,populations
R5980 T8862 T8863 amod recombinant,TFIIHs
R5981 T8863 T8861 pobj TFIIHs,of
R5982 T8864 T8858 punct (,populations
R5983 T8865 T8858 acl containing,populations
R5984 T8866 T8865 dobj XPD,containing
R5985 T8867 T8866 punct ", ",XPD
R5986 T8868 T8866 conj XPB,XPD
R5987 T8869 T8868 punct ", ",XPB
R5988 T8870 T8868 conj p62,XPB
R5989 T8871 T8870 punct ", ",p62
R5990 T8872 T8870 conj p52,p62
R5991 T8873 T8872 punct ", ",p52
R5992 T8874 T8875 compound His,p44
R5993 T8875 T8872 conj p44,p52
R5994 T8876 T8875 punct -,p44
R5995 T8877 T8875 punct ", ",p44
R5996 T8878 T8879 compound Flag,p34
R5997 T8879 T8875 conj p34,p44
R5998 T8880 T8879 punct -,p34
R5999 T8881 T8879 punct ", ",p34
R6000 T8882 T8879 conj cdk7,p34
R6001 T8883 T8882 punct ", ",cdk7
R6002 T8884 T8885 compound cyclin,H
R6003 T8885 T8882 conj H,cdk7
R6004 T8886 T8885 punct ", ",H
R6005 T8887 T8885 conj Mat1,H
R6006 T8888 T8887 punct ", ",Mat1
R6007 T8889 T8887 cc and,Mat1
R6008 T8890 T8887 conj p8,Mat1
R6009 T8891 T8855 punct ),mixed
R6010 T8892 T8855 auxpass were,mixed
R6011 T8893 T8855 prep with,mixed
R6012 T8894 T8895 amod recombinant,XPG
R6013 T8895 T8893 pobj XPG,with
R6014 T8896 T8895 punct ", ",XPG
R6015 T8897 T8898 compound XPF,ERCC1
R6016 T8898 T8895 appos ERCC1,XPG
R6017 T8899 T8898 punct /,ERCC1
R6018 T8900 T8895 punct ", ",XPG
R6019 T8901 T8902 compound XPC,hHR23B
R6020 T8902 T8895 appos hHR23B,XPG
R6021 T8903 T8902 punct /,hHR23B
R6022 T8904 T8895 punct ", ",XPG
R6023 T8905 T8895 appos RPA,XPG
R6024 T8906 T8895 punct ", ",XPG
R6025 T8907 T8895 cc and,XPG
R6026 T8908 T8909 det a,substrate
R6027 T8909 T8895 conj substrate,XPG
R6028 T8910 T8909 amod radiolabelled,substrate
R6029 T8911 T8909 amod synthetic,substrate
R6030 T8912 T8909 compound NER,substrate
R6031 T8913 T8855 punct .,mixed
R6032 T8915 T8916 det The,products
R6033 T8916 T8918 nsubjpass products,visualised
R6034 T8917 T8916 compound excision,products
R6035 T8919 T8920 punct (,nucleotides
R6036 T8920 T8916 parataxis nucleotides,products
R6037 T8921 T8922 quantmod 26,34
R6038 T8922 T8920 nummod 34,nucleotides
R6039 T8923 T8922 punct –,34
R6040 T8924 T8920 prep in,nucleotides
R6041 T8925 T8924 pobj length,in
R6042 T8926 T8920 punct ),nucleotides
R6043 T8927 T8918 auxpass were,visualised
R6044 T8928 T8918 prep at,visualised
R6045 T8929 T8930 compound nucleotide,resolution
R6046 T8930 T8928 pobj resolution,at
R6047 T8931 T8918 prep on,visualised
R6048 T8932 T8933 det a,gel
R6049 T8933 T8931 pobj gel,on
R6050 T8934 T8933 amod denaturing,gel
R6051 T8935 T8933 compound polyacrylamide,gel
R6052 T8936 T8937 mark as,indicated
R6053 T8937 T8918 advcl indicated,visualised
R6054 T8938 T8918 punct .,visualised
R6055 T8941 T8942 det the,activity
R6056 T8942 T8940 dobj activity,Note
R6057 T8943 T8942 amod weak,activity
R6058 T8944 T8942 acl corresponding,activity
R6059 T8945 T8944 prep to,corresponding
R6060 T8946 T8947 det each,complex
R6061 T8947 T8945 pobj complex,to
R6062 T8948 T8947 amod single,complex
R6063 T8949 T8948 cc and,single
R6064 T8950 T8948 conj combined,single
R6065 T8951 T8947 compound TFIIH,complex
R6066 T8952 T8953 punct (,3
R6067 T8953 T8947 parataxis 3,complex
R6068 T8954 T8953 nmod lanes,3
R6069 T8955 T8956 punct –,8
R6070 T8956 T8953 prep 8,3
R6071 T8957 T8953 punct ),3
R6072 T8958 T8944 advcl relative,corresponding
R6073 T8959 T8958 prep to,relative
R6074 T8960 T8961 det the,wt
R6075 T8961 T8959 pobj wt,to
R6076 T8962 T8963 punct (,lane
R6077 T8963 T8961 parataxis lane,wt
R6078 T8964 T8963 nummod 1,lane
R6079 T8965 T8963 punct ),lane
R6080 T8966 T8961 cc and,wt
R6081 T8967 T8968 amod negative,controls
R6082 T8968 T8961 conj controls,wt
R6083 T8969 T8970 punct (,lane
R6084 T8970 T8968 parataxis lane,controls
R6085 T8971 T8970 nummod 2,lane
R6086 T8972 T8970 punct ),lane
R6087 T8973 T8940 punct .,Note
R6088 T8975 T8976 punct (,E
R6089 T8976 T8977 meta E,reduction
R6090 T8978 T8976 punct ),E
R6091 T8979 T8977 nmod Xpd,reduction
R6092 T8980 T8981 npadvmod dose,dependent
R6093 T8981 T8977 amod dependent,reduction
R6094 T8982 T8981 punct -,dependent
R6095 T8983 T8977 prep of,reduction
R6096 T8984 T8983 pobj TFIIH,of
R6097 T8985 T8977 prep in,reduction
R6098 T8986 T8987 amod homozygous,TTD
R6099 T8987 T8990 nmod TTD,cells
R6100 T8988 T8987 nmod XpdTTD,TTD
R6101 T8989 T8987 punct /,TTD
R6102 T8990 T8985 pobj cells,in
R6103 T8991 T8987 punct ", ",TTD
R6104 T8992 T8993 amod hemizygous,KO
R6105 T8993 T8987 conj KO,TTD
R6106 T8994 T8993 compound XpdTTD,KO
R6107 T8995 T8993 punct /,KO
R6108 T8996 T8993 punct ", ",KO
R6109 T8997 T8993 cc and,KO
R6110 T8998 T8999 nmod compound,†XPCS
R6111 T8999 T8993 conj †XPCS,KO
R6112 T9000 T8999 amod heterozygous,†XPCS
R6113 T9001 T8999 compound XpdTTD,†XPCS
R6114 T9002 T8999 punct /,†XPCS
R6115 T9003 T8999 cc and,†XPCS
R6116 T9004 T9005 compound XpdTTD,†XP
R6117 T9005 T8999 conj †XP,†XPCS
R6118 T9006 T9005 punct /,†XP
R6119 T9007 T8977 prep by,reduction
R6120 T9008 T9009 amod comparative,immunofluorescence
R6121 T9009 T9007 pobj immunofluorescence,by
R6122 T9010 T9009 prep of,immunofluorescence
R6123 T9011 T9012 det the,subunit
R6124 T9012 T9010 pobj subunit,of
R6125 T9013 T9012 compound p62,subunit
R6126 T9014 T9012 prep of,subunit
R6127 T9015 T9014 pobj TFIIH,of
R6128 T9016 T8977 punct .,reduction
R6129 T9018 T9019 amod Roman,numerals
R6130 T9019 T9020 nsubj numerals,represent
R6131 T9021 T9022 amod different,slides
R6132 T9022 T9020 dobj slides,represent
R6133 T9023 T9022 amod microscopic,slides
R6134 T9024 T9020 cc and,represent
R6135 T9025 T9026 amod Arabic,numerals
R6136 T9026 T9027 nsubj numerals,lines
R6137 T9027 T9020 conj lines,represent
R6138 T9028 T9027 amod different,lines
R6139 T9029 T9027 compound cell,lines
R6140 T9030 T9027 acl labelled,lines
R6141 T9031 T9032 mark as,follows
R6142 T9032 T9030 advcl follows,labelled
R6143 T9033 T9027 punct : ,lines
R6144 T9034 T9035 punct (,I
R6145 T9035 T9036 meta I,cells
R6146 T9036 T9027 dep cells,lines
R6147 T9037 T9035 punct ),I
R6148 T9038 T9036 compound wt,cells
R6149 T9039 T9040 punct (,1
R6150 T9040 T9036 parataxis 1,cells
R6151 T9041 T9040 punct ),1
R6152 T9042 T9036 acl labelled,cells
R6153 T9043 T9042 prep with,labelled
R6154 T9044 T9045 nummod 2,μm
R6155 T9045 T9047 compound μm,beads
R6156 T9046 T9045 punct -,μm
R6157 T9047 T9043 pobj beads,with
R6158 T9048 T9036 punct ", ",cells
R6159 T9049 T9050 compound XpdTTD,TTD
R6160 T9050 T9052 compound TTD,cells
R6161 T9051 T9050 punct /,TTD
R6162 T9052 T9036 conj cells,cells
R6163 T9053 T9054 punct (,2
R6164 T9054 T9052 parataxis 2,cells
R6165 T9055 T9054 punct ),2
R6166 T9056 T9052 prep with,cells
R6167 T9057 T9058 nummod 0.79,μm
R6168 T9058 T9060 compound μm,beads
R6169 T9059 T9058 punct -,μm
R6170 T9060 T9056 pobj beads,with
R6171 T9061 T9052 punct ", ",cells
R6172 T9062 T9052 cc and,cells
R6173 T9063 T9064 compound XpdTTD,KO
R6174 T9064 T9066 compound KO,cells
R6175 T9065 T9064 punct /,KO
R6176 T9066 T9052 conj cells,cells
R6177 T9067 T9068 punct (,3
R6178 T9068 T9066 parataxis 3,cells
R6179 T9069 T9068 punct ),3
R6180 T9070 T9066 prep with,cells
R6181 T9071 T9072 det no,beads
R6182 T9072 T9070 pobj beads,with
R6183 T9073 T9036 punct ;,cells
R6184 T9074 T9075 punct (,II
R6185 T9075 T9076 meta II,cells
R6186 T9076 T9036 conj cells,cells
R6187 T9077 T9075 punct ),II
R6188 T9078 T9076 compound wt,cells
R6189 T9079 T9080 punct (,1
R6190 T9080 T9076 parataxis 1,cells
R6191 T9081 T9080 punct ),1
R6192 T9082 T9076 acl labelled,cells
R6193 T9083 T9082 prep with,labelled
R6194 T9084 T9085 nummod 0.79,μm
R6195 T9085 T9087 compound μm,beads
R6196 T9086 T9085 punct -,μm
R6197 T9087 T9083 pobj beads,with
R6198 T9088 T9076 cc and,cells
R6199 T9089 T9090 compound XpdTTD,†XPCS
R6200 T9090 T9092 compound †XPCS,cells
R6201 T9091 T9090 punct /,†XPCS
R6202 T9092 T9076 conj cells,cells
R6203 T9093 T9094 punct (,4
R6204 T9094 T9092 parataxis 4,cells
R6205 T9095 T9094 punct ),4
R6206 T9096 T9092 prep with,cells
R6207 T9097 T9098 det no,beads
R6208 T9098 T9096 pobj beads,with
R6209 T9099 T9076 punct ;,cells
R6210 T9100 T9076 cc and,cells
R6211 T9101 T9102 punct (,III
R6212 T9102 T9103 meta III,cells
R6213 T9103 T9076 conj cells,cells
R6214 T9104 T9102 punct ),III
R6215 T9105 T9103 compound wt,cells
R6216 T9106 T9107 punct (,1
R6217 T9107 T9103 parataxis 1,cells
R6218 T9108 T9107 punct ),1
R6219 T9109 T9103 acl labelled,cells
R6220 T9110 T9109 prep with,labelled
R6221 T9111 T9112 nummod 0.79,μm
R6222 T9112 T9114 compound μm,beads
R6223 T9113 T9112 punct -,μm
R6224 T9114 T9110 pobj beads,with
R6225 T9115 T9103 cc and,cells
R6226 T9116 T9117 compound XpdTTD,†XP
R6227 T9117 T9119 compound †XP,cells
R6228 T9118 T9117 punct /,†XP
R6229 T9119 T9103 conj cells,cells
R6230 T9120 T9121 punct (,5
R6231 T9121 T9119 parataxis 5,cells
R6232 T9122 T9121 punct ),5
R6233 T9123 T9119 prep with,cells
R6234 T9124 T9125 det no,beads
R6235 T9125 T9123 pobj beads,with
R6236 T9126 T9027 punct .,lines
R6237 T9128 T9129 punct (,F
R6238 T9129 T9130 meta F,Quantification
R6239 T9131 T9129 punct ),F
R6240 T9132 T9130 prep of,Quantification
R6241 T9133 T9134 amod immunofluorescent,signal
R6242 T9134 T9132 pobj signal,of
R6243 T9135 T9134 prep from,signal
R6244 T9136 T9137 advmod at,50
R6245 T9137 T9139 nummod 50,nuclei
R6246 T9138 T9137 advmod least,50
R6247 T9139 T9135 pobj nuclei,from
R6248 T9140 T9139 prep per,nuclei
R6249 T9141 T9142 compound cell,line
R6250 T9142 T9140 pobj line,per
R6251 T9143 T9139 cc and,nuclei
R6252 T9144 T9145 quantmod 2,6
R6253 T9145 T9147 nummod 6,experiments
R6254 T9146 T9145 punct –,6
R6255 T9147 T9139 conj experiments,nuclei
R6256 T9148 T9147 prep per,experiments
R6257 T9149 T9148 pobj genotype,per
R6258 T9150 T9130 punct .,Quantification
R6259 T9152 T9153 nsubjpass Bars,depicted
R6260 T9154 T9152 acl representing,Bars
R6261 T9155 T9154 dobj cells,representing
R6262 T9156 T9155 acl analysed,cells
R6263 T9157 T9156 prep on,analysed
R6264 T9158 T9159 det the,slide
R6265 T9159 T9157 pobj slide,on
R6266 T9160 T9159 amod same,slide
R6267 T9161 T9159 amod microscopic,slide
R6268 T9162 T9153 auxpass are,depicted
R6269 T9163 T9153 npadvmod side,depicted
R6270 T9164 T9163 prep by,side
R6271 T9165 T9164 pobj side,by
R6272 T9166 T9153 punct ", ",depicted
R6273 T9167 T9153 prep with,depicted
R6274 T9168 T9167 pobj wt,with
R6275 T9169 T9168 acl set,wt
R6276 T9170 T9169 prep at,set
R6277 T9171 T9172 nummod 100,%
R6278 T9172 T9170 pobj %,at
R6279 T9173 T9153 punct .,depicted
R6280 T9175 T9176 det The,value
R6281 T9176 T9179 nsubj value,indicates
R6282 T9177 T9176 compound p,value
R6283 T9178 T9176 punct -,value
R6284 T9180 T9181 amod minimum,difference
R6285 T9181 T9179 dobj difference,indicates
R6286 T9182 T9181 amod significant,difference
R6287 T9183 T9181 prep between,difference
R6288 T9184 T9183 pobj wt,between
R6289 T9185 T9184 cc and,wt
R6290 T9186 T9187 det the,lines
R6291 T9187 T9184 conj lines,wt
R6292 T9188 T9187 amod indicated,lines
R6293 T9189 T9187 compound cell,lines
R6294 T9190 T9187 acl analysed,lines
R6295 T9191 T9190 prep on,analysed
R6296 T9192 T9193 det the,slide
R6297 T9193 T9191 pobj slide,on
R6298 T9194 T9193 amod same,slide
R6299 T9195 T9193 amod microscopic,slide
R6300 T9196 T9181 prep within,difference
R6301 T9197 T9198 nummod one,experiment
R6302 T9198 T9196 pobj experiment,within
R6303 T9199 T9179 punct .,indicates

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8414 347-350 PR:000007164 denotes Xpd
T8415 595-601 SO:0001026 denotes genome
T8416 602-608 GO:0006281 denotes repair
T8417 641-644 PR:000007164 denotes Xpd
T8418 661-664 PR:000007164 denotes Xpd
T8419 680-683 PR:000007164 denotes Xpd
T8420 703-706 PR:000007164 denotes Xpd
T8421 830-833 PR:000007164 denotes Xpd
T8422 888-891 PR:000007164 denotes Xpd
T8423 924-952 GO:0006283 denotes transcription-coupled repair
T8424 1006-1009 PR:000007164 denotes Xpd
T8425 1026-1029 PR:000007164 denotes Xpd
T8426 1045-1048 PR:000007164 denotes Xpd
T8427 1068-1071 PR:000007164 denotes Xpd
T8428 1148-1156 MOP:0000780 denotes Incision
T8429 1202-1217 GO:0005675 denotes TFIIH complexes
T8430 1237-1240 GO:0006289 denotes NER
T8431 1311-1317 GO:0005675 denotes TFIIHs
T8432 1330-1333 PR:000007164 denotes XPD
T8433 1335-1338 PR:000007165 denotes XPB
T8434 1340-1343 PR:000008317 denotes p62
T8435 1345-1348 PR:000008320 denotes p52
T8436 1354-1357 PR:000008318 denotes p44
T8437 1364-1367 PR:000008319 denotes p34
T8438 1369-1373 PR:000005265 denotes cdk7
T8439 1375-1383 PR:000005130 denotes cyclin H
T8440 1385-1389 PR:000010496 denotes Mat1
T8441 1395-1397 PR:000008321 denotes p8
T8442 1427-1430 PR:000007167 denotes XPG
T8443 1432-1435 PR:000007166 denotes XPF
T8444 1436-1441 PR:000007163 denotes ERCC1
T8445 1443-1446 PR:000017494 denotes XPC
T8446 1447-1453 PR:000013670 denotes hHR23B
T8447 1455-1458 GO:0005662 denotes RPA
T8448 1490-1493 GO:0006289 denotes NER
T8449 1713-1726 GO:0005675 denotes TFIIH complex
T8450 1803-1806 PR:000007164 denotes Xpd
T8451 1835-1840 GO:0005675 denotes TFIIH
T8452 1855-1858 PR:000007164 denotes Xpd
T8453 1878-1881 PR:000007164 denotes Xpd
T8454 1915-1918 PR:000007164 denotes Xpd
T8455 1932-1935 PR:000007164 denotes Xpd
T8456 1990-2010 PR:000008317 denotes p62 subunit of TFIIH
T8457 2005-2010 GO:0005675 denotes TFIIH
T8458 2171-2174 PR:000007164 denotes Xpd
T8459 2216-2219 PR:000007164 denotes Xpd
T8460 2301-2304 PR:000007164 denotes Xpd
T8461 2394-2397 PR:000007164 denotes Xpd
T8462 2494-2500 GO:0005634 denotes nuclei
T8405 10-15 GO:0005675 denotes TFIIH
T8406 44-47 PR:000007164 denotes XPD
T8407 143-146 PR:000007164 denotes Xpd
T8408 165-168 PR:000007164 denotes Xpd
T8409 178-181 PR:000007164 denotes Xpd
T8410 185-192 SO:0001023 denotes alleles
T8411 274-277 PR:000007164 denotes Xpd
T8412 322-331 GO:0010467 denotes expressed
T8413 339-345 SO:0001023 denotes allele

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8463 10-15 GO:0005675 denotes TFIIH
T8464 44-47 PR_EXT:000007164 denotes XPD
T8465 82-90 CL_GO_EXT:cell denotes Cellular
T8466 122-128 SO_EXT:sequence_rescue_process denotes Rescue
T8467 143-146 PR_EXT:000007164 denotes Xpd
T8468 165-168 PR_EXT:000007164 denotes Xpd
T8469 178-181 PR_EXT:000007164 denotes Xpd
T8470 185-192 SO_EXT:0001023 denotes alleles
T8471 274-277 PR_EXT:000007164 denotes Xpd
T8472 287-292 CL_GO_EXT:cell denotes cells
T8473 322-331 GO:0010467 denotes expressed
T8474 339-345 SO_EXT:0001023 denotes allele
T8475 347-350 PR_EXT:000007164 denotes Xpd
T8476 460-464 CL_GO_EXT:cell denotes cell
T8477 475-483 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T8478 595-601 SO_EXT:0001026 denotes genome
T8479 602-608 GO:0006281 denotes repair
T8480 641-644 PR_EXT:000007164 denotes Xpd
T8481 661-664 PR_EXT:000007164 denotes Xpd
T8482 680-683 PR_EXT:000007164 denotes Xpd
T8483 703-706 PR_EXT:000007164 denotes Xpd
T8484 721-725 CL_GO_EXT:cell denotes cell
T8485 736-744 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T8486 830-833 PR_EXT:000007164 denotes Xpd
T8487 888-891 PR_EXT:000007164 denotes Xpd
T8488 924-952 GO:0006283 denotes transcription-coupled repair
T8489 1006-1009 PR_EXT:000007164 denotes Xpd
T8490 1026-1029 PR_EXT:000007164 denotes Xpd
T8491 1045-1048 PR_EXT:000007164 denotes Xpd
T8492 1068-1071 PR_EXT:000007164 denotes Xpd
T8493 1086-1090 CL_GO_EXT:cell denotes cell
T8494 1101-1109 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T8495 1148-1156 MOP:0000780 denotes Incision
T8496 1157-1165 SO_EXT:sequence_deletion_process denotes excision
T8497 1194-1201 SO_EXT:sequence_alteration_process denotes altered
T8498 1202-1217 GO:0005675 denotes TFIIH complexes
T8499 1237-1240 GO:0006289 denotes NER
T8500 1299-1310 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T8501 1311-1317 GO:0005675 denotes TFIIHs
T8502 1330-1333 PR_EXT:000007164 denotes XPD
T8503 1335-1338 PR_EXT:000007165 denotes XPB
T8504 1340-1343 PR_EXT:000008317 denotes p62
T8505 1345-1348 PR_EXT:000008320 denotes p52
T8506 1350-1353 CHEBI_SO_EXT:histidine denotes His
T8507 1354-1357 PR_EXT:000008318 denotes p44
T8508 1364-1367 PR_EXT:000008319 denotes p34
T8509 1369-1373 PR_EXT:000005265 denotes cdk7
T8510 1375-1383 PR_EXT:000005130 denotes cyclin H
T8511 1385-1389 PR_EXT:000010496 denotes Mat1
T8512 1395-1397 PR_EXT:000008321 denotes p8
T8513 1415-1426 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T8514 1427-1430 PR_EXT:000007167 denotes XPG
T8515 1432-1435 PR_EXT:000007166 denotes XPF
T8516 1436-1441 PR_EXT:000007163 denotes ERCC1
T8517 1443-1446 PR_EXT:000017494 denotes XPC
T8518 1447-1453 PR_EXT:000013670 denotes hHR23B
T8519 1455-1458 GO:0005662 denotes RPA
T8520 1466-1479 CHEBI_EXT:radiolabel_process denotes radiolabelled
T8521 1490-1493 GO:0006289 denotes NER
T8522 1509-1517 SO_EXT:sequence_deletion_process denotes excision
T8523 1534-1545 CHEBI_SO_EXT:nucleotide denotes nucleotides
T8524 1576-1586 CHEBI_SO_EXT:nucleotide denotes nucleotide
T8525 1603-1613 GO_EXT:macromolecule_denaturation denotes denaturing
T8526 1614-1628 CHEBI_EXT:polyacrylamide denotes polyacrylamide
T8527 1713-1726 GO:0005675 denotes TFIIH complex
T8528 1755-1757 SO_EXT:wild_type_entity_or_quality denotes wt
T8529 1803-1806 PR_EXT:000007164 denotes Xpd
T8530 1835-1840 GO:0005675 denotes TFIIH
T8531 1855-1858 PR_EXT:000007164 denotes Xpd
T8532 1878-1881 PR_EXT:000007164 denotes Xpd
T8533 1915-1918 PR_EXT:000007164 denotes Xpd
T8534 1932-1935 PR_EXT:000007164 denotes Xpd
T8535 1943-1948 CL_GO_EXT:cell denotes cells
T8536 1990-2010 PR_EXT:000008317 denotes p62 subunit of TFIIH
T8537 2005-2010 GO:0005675 denotes TFIIH
T8538 2096-2100 CL_GO_EXT:cell denotes cell
T8539 2107-2115 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8540 2132-2134 SO_EXT:wild_type_entity_or_quality denotes wt
T8541 2135-2140 CL_GO_EXT:cell denotes cells
T8542 2145-2153 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8543 2171-2174 PR_EXT:000007164 denotes Xpd
T8544 2182-2187 CL_GO_EXT:cell denotes cells
T8545 2216-2219 PR_EXT:000007164 denotes Xpd
T8546 2226-2231 CL_GO_EXT:cell denotes cells
T8547 2256-2258 SO_EXT:wild_type_entity_or_quality denotes wt
T8548 2259-2264 CL_GO_EXT:cell denotes cells
T8549 2269-2277 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8550 2301-2304 PR_EXT:000007164 denotes Xpd
T8551 2314-2319 CL_GO_EXT:cell denotes cells
T8552 2349-2351 SO_EXT:wild_type_entity_or_quality denotes wt
T8553 2352-2357 CL_GO_EXT:cell denotes cells
T8554 2362-2370 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8555 2394-2397 PR_EXT:000007164 denotes Xpd
T8556 2405-2410 CL_GO_EXT:cell denotes cells
T8557 2494-2500 GO:0005634 denotes nuclei
T8558 2505-2509 CL_GO_EXT:cell denotes cell
T8559 2539-2547 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T8560 2567-2572 CL_GO_EXT:cell denotes cells
T8561 2644-2646 SO_EXT:wild_type_entity_or_quality denotes wt
T8562 2721-2723 SO_EXT:wild_type_entity_or_quality denotes wt
T8563 2742-2746 CL_GO_EXT:cell denotes cell