Id |
Subject |
Object |
Predicate |
Lexical cue |
T86 |
7-9 |
IN |
denotes |
of |
T87 |
10-18 |
NN |
denotes |
Progeria |
T88 |
19-21 |
IN |
denotes |
in |
T89 |
22-41 |
NN |
denotes |
Trichothiodystrophy |
T90 |
42-44 |
IN |
denotes |
by |
T91 |
45-55 |
JJ |
denotes |
Homozygous |
T92 |
67-74 |
NNS |
denotes |
Alleles |
T93 |
56-62 |
JJ |
denotes |
Lethal |
T94 |
63-66 |
NN |
denotes |
Xpd |
T95 |
124-332 |
sentence |
denotes |
Although compound heterozygosity, or the presence of two different mutant alleles of the same gene, is common in human recessive disease, its potential to impact disease outcome has not been well documented. |
T96 |
125-133 |
IN |
denotes |
Although |
T97 |
225-227 |
VBZ |
denotes |
is |
T98 |
134-142 |
NN |
denotes |
compound |
T99 |
143-157 |
NN |
denotes |
heterozygosity |
T100 |
157-159 |
, |
denotes |
, |
T101 |
159-161 |
CC |
denotes |
or |
T102 |
162-165 |
DT |
denotes |
the |
T103 |
166-174 |
NN |
denotes |
presence |
T104 |
175-177 |
IN |
denotes |
of |
T105 |
178-181 |
CD |
denotes |
two |
T106 |
199-206 |
NNS |
denotes |
alleles |
T107 |
182-191 |
JJ |
denotes |
different |
T108 |
192-198 |
JJ |
denotes |
mutant |
T109 |
207-209 |
IN |
denotes |
of |
T110 |
210-213 |
DT |
denotes |
the |
T111 |
219-223 |
NN |
denotes |
gene |
T112 |
214-218 |
JJ |
denotes |
same |
T113 |
223-225 |
, |
denotes |
, |
T114 |
321-331 |
VBN |
denotes |
documented |
T115 |
228-234 |
JJ |
denotes |
common |
T116 |
235-237 |
IN |
denotes |
in |
T117 |
238-243 |
JJ |
denotes |
human |
T118 |
254-261 |
NN |
denotes |
disease |
T119 |
244-253 |
JJ |
denotes |
recessive |
T120 |
261-263 |
, |
denotes |
, |
T121 |
263-266 |
PRP$ |
denotes |
its |
T122 |
267-276 |
NN |
denotes |
potential |
T123 |
277-279 |
TO |
denotes |
to |
T124 |
280-286 |
VB |
denotes |
impact |
T125 |
287-294 |
NN |
denotes |
disease |
T126 |
295-302 |
NN |
denotes |
outcome |
T127 |
303-306 |
VBZ |
denotes |
has |
T128 |
307-310 |
RB |
denotes |
not |
T129 |
311-315 |
VBN |
denotes |
been |
T130 |
316-320 |
RB |
denotes |
well |
T131 |
331-332 |
. |
denotes |
. |
T132 |
332-487 |
sentence |
denotes |
This is most likely because of the inherent difficulty in distinguishing specific biallelic effects from differences in environment or genetic background. |
T133 |
333-337 |
DT |
denotes |
This |
T134 |
338-340 |
VBZ |
denotes |
is |
T135 |
341-345 |
RBS |
denotes |
most |
T136 |
346-352 |
RB |
denotes |
likely |
T137 |
353-360 |
IN |
denotes |
because |
T138 |
361-363 |
IN |
denotes |
of |
T139 |
364-367 |
DT |
denotes |
the |
T140 |
377-387 |
NN |
denotes |
difficulty |
T141 |
368-376 |
JJ |
denotes |
inherent |
T142 |
388-390 |
IN |
denotes |
in |
T143 |
391-405 |
VBG |
denotes |
distinguishing |
T144 |
406-414 |
JJ |
denotes |
specific |
T145 |
425-432 |
NNS |
denotes |
effects |
T146 |
415-424 |
JJ |
denotes |
biallelic |
T147 |
433-437 |
IN |
denotes |
from |
T148 |
438-449 |
NNS |
denotes |
differences |
T149 |
450-452 |
IN |
denotes |
in |
T150 |
453-464 |
NN |
denotes |
environment |
T151 |
465-467 |
CC |
denotes |
or |
T152 |
468-475 |
JJ |
denotes |
genetic |
T153 |
476-486 |
NN |
denotes |
background |
T154 |
486-487 |
. |
denotes |
. |
T155 |
487-666 |
sentence |
denotes |
We addressed the potential of different recessive alleles to contribute to the enigmatic pleiotropy associated with XPD recessive disorders in compound heterozygous mouse models. |
T156 |
488-490 |
PRP |
denotes |
We |
T157 |
491-500 |
VBD |
denotes |
addressed |
T158 |
501-504 |
DT |
denotes |
the |
T159 |
505-514 |
NN |
denotes |
potential |
T160 |
515-517 |
IN |
denotes |
of |
T161 |
518-527 |
JJ |
denotes |
different |
T162 |
538-545 |
NNS |
denotes |
alleles |
T163 |
528-537 |
JJ |
denotes |
recessive |
T164 |
546-548 |
TO |
denotes |
to |
T165 |
549-559 |
VB |
denotes |
contribute |
T166 |
560-562 |
IN |
denotes |
to |
T167 |
563-566 |
DT |
denotes |
the |
T168 |
577-587 |
NN |
denotes |
pleiotropy |
T169 |
567-576 |
JJ |
denotes |
enigmatic |
T170 |
588-598 |
VBN |
denotes |
associated |
T171 |
599-603 |
IN |
denotes |
with |
T172 |
604-607 |
NN |
denotes |
XPD |
T173 |
618-627 |
NNS |
denotes |
disorders |
T174 |
608-617 |
JJ |
denotes |
recessive |
T175 |
628-630 |
IN |
denotes |
in |
T176 |
631-639 |
NN |
denotes |
compound |
T177 |
659-665 |
NNS |
denotes |
models |
T178 |
640-652 |
JJ |
denotes |
heterozygous |
T179 |
653-658 |
NN |
denotes |
mouse |
T180 |
665-666 |
. |
denotes |
. |
T181 |
666-893 |
sentence |
denotes |
Alterations in this essential helicase, with functions in both DNA repair and basal transcription, result in diverse pathologies ranging from elevated UV sensitivity and cancer predisposition to accelerated segmental progeria. |
T182 |
667-678 |
NNS |
denotes |
Alterations |
T183 |
766-772 |
VBP |
denotes |
result |
T184 |
679-681 |
IN |
denotes |
in |
T185 |
682-686 |
DT |
denotes |
this |
T186 |
697-705 |
NN |
denotes |
helicase |
T187 |
687-696 |
JJ |
denotes |
essential |
T188 |
705-707 |
, |
denotes |
, |
T189 |
707-711 |
IN |
denotes |
with |
T190 |
712-721 |
NNS |
denotes |
functions |
T191 |
722-724 |
IN |
denotes |
in |
T192 |
725-729 |
CC |
denotes |
both |
T193 |
734-740 |
NN |
denotes |
repair |
T194 |
730-733 |
NN |
denotes |
DNA |
T195 |
741-744 |
CC |
denotes |
and |
T196 |
745-750 |
JJ |
denotes |
basal |
T197 |
751-764 |
NN |
denotes |
transcription |
T198 |
764-766 |
, |
denotes |
, |
T199 |
773-775 |
IN |
denotes |
in |
T200 |
776-783 |
JJ |
denotes |
diverse |
T201 |
784-795 |
NNS |
denotes |
pathologies |
T202 |
796-803 |
VBG |
denotes |
ranging |
T203 |
804-808 |
IN |
denotes |
from |
T204 |
809-817 |
VBN |
denotes |
elevated |
T205 |
821-832 |
NN |
denotes |
sensitivity |
T206 |
818-820 |
NN |
denotes |
UV |
T207 |
833-836 |
CC |
denotes |
and |
T208 |
837-843 |
NN |
denotes |
cancer |
T209 |
844-858 |
NN |
denotes |
predisposition |
T210 |
859-861 |
IN |
denotes |
to |
T211 |
862-873 |
VBN |
denotes |
accelerated |
T212 |
884-892 |
NN |
denotes |
progeria |
T213 |
874-883 |
JJ |
denotes |
segmental |
T214 |
892-893 |
. |
denotes |
. |
T215 |
893-1436 |
sentence |
denotes |
We report a variety of biallelic effects on organismal phenotype attributable to combinations of recessive Xpd alleles, including the following: (i) the ability of homozygous lethal Xpd alleles to ameliorate a variety of disease symptoms when their essential basal transcription function is supplied by a different disease-causing allele, (ii) differential developmental and tissue-specific functions of distinct Xpd allele products, and (iii) interallelic complementation, a phenomenon rarely reported at clinically relevant loci in mammals. |
T216 |
894-896 |
PRP |
denotes |
We |
T217 |
897-903 |
VBP |
denotes |
report |
T218 |
904-905 |
DT |
denotes |
a |
T219 |
906-913 |
NN |
denotes |
variety |
T220 |
914-916 |
IN |
denotes |
of |
T221 |
917-926 |
JJ |
denotes |
biallelic |
T222 |
927-934 |
NNS |
denotes |
effects |
T223 |
935-937 |
IN |
denotes |
on |
T224 |
938-948 |
JJ |
denotes |
organismal |
T225 |
949-958 |
NN |
denotes |
phenotype |
T226 |
959-971 |
JJ |
denotes |
attributable |
T227 |
972-974 |
IN |
denotes |
to |
T228 |
975-987 |
NNS |
denotes |
combinations |
T229 |
988-990 |
IN |
denotes |
of |
T230 |
991-1000 |
JJ |
denotes |
recessive |
T231 |
1005-1012 |
NNS |
denotes |
alleles |
T232 |
1001-1004 |
NN |
denotes |
Xpd |
T233 |
1012-1014 |
, |
denotes |
, |
T234 |
1014-1023 |
VBG |
denotes |
including |
T235 |
1024-1027 |
DT |
denotes |
the |
T236 |
1028-1037 |
NN |
denotes |
following |
T237 |
1037-1039 |
: |
denotes |
: |
T238 |
1039-1040 |
-LRB- |
denotes |
( |
T239 |
1040-1041 |
LS |
denotes |
i |
T240 |
1047-1054 |
NN |
denotes |
ability |
T241 |
1041-1042 |
-RRB- |
denotes |
) |
T242 |
1043-1046 |
DT |
denotes |
the |
T243 |
1055-1057 |
IN |
denotes |
of |
T244 |
1058-1068 |
JJ |
denotes |
homozygous |
T245 |
1080-1087 |
NNS |
denotes |
alleles |
T246 |
1069-1075 |
JJ |
denotes |
lethal |
T247 |
1076-1079 |
NN |
denotes |
Xpd |
T248 |
1088-1090 |
TO |
denotes |
to |
T249 |
1091-1101 |
VB |
denotes |
ameliorate |
T250 |
1102-1103 |
DT |
denotes |
a |
T251 |
1104-1111 |
NN |
denotes |
variety |
T252 |
1112-1114 |
IN |
denotes |
of |
T253 |
1115-1122 |
NN |
denotes |
disease |
T254 |
1123-1131 |
NNS |
denotes |
symptoms |
T255 |
1132-1136 |
WRB |
denotes |
when |
T256 |
1185-1193 |
VBN |
denotes |
supplied |
T257 |
1137-1142 |
PRP$ |
denotes |
their |
T258 |
1173-1181 |
NN |
denotes |
function |
T259 |
1143-1152 |
JJ |
denotes |
essential |
T260 |
1153-1158 |
JJ |
denotes |
basal |
T261 |
1159-1172 |
NN |
denotes |
transcription |
T262 |
1182-1184 |
VBZ |
denotes |
is |
T263 |
1194-1196 |
IN |
denotes |
by |
T264 |
1197-1198 |
DT |
denotes |
a |
T265 |
1225-1231 |
NN |
denotes |
allele |
T266 |
1199-1208 |
JJ |
denotes |
different |
T267 |
1209-1216 |
NN |
denotes |
disease |
T268 |
1217-1224 |
VBG |
denotes |
causing |
T269 |
1216-1217 |
HYPH |
denotes |
- |
T270 |
1231-1233 |
, |
denotes |
, |
T271 |
1233-1234 |
-LRB- |
denotes |
( |
T272 |
1234-1236 |
LS |
denotes |
ii |
T273 |
1285-1294 |
NNS |
denotes |
functions |
T274 |
1236-1237 |
-RRB- |
denotes |
) |
T275 |
1238-1250 |
JJ |
denotes |
differential |
T276 |
1251-1264 |
JJ |
denotes |
developmental |
T277 |
1265-1268 |
CC |
denotes |
and |
T278 |
1269-1275 |
NN |
denotes |
tissue |
T279 |
1276-1284 |
JJ |
denotes |
specific |
T280 |
1275-1276 |
HYPH |
denotes |
- |
T281 |
1295-1297 |
IN |
denotes |
of |
T282 |
1298-1306 |
JJ |
denotes |
distinct |
T283 |
1318-1326 |
NNS |
denotes |
products |
T284 |
1307-1310 |
NN |
denotes |
Xpd |
T285 |
1311-1317 |
NN |
denotes |
allele |
T286 |
1326-1328 |
, |
denotes |
, |
T287 |
1328-1331 |
CC |
denotes |
and |
T288 |
1332-1333 |
-LRB- |
denotes |
( |
T289 |
1333-1336 |
LS |
denotes |
iii |
T290 |
1351-1366 |
NN |
denotes |
complementation |
T291 |
1336-1337 |
-RRB- |
denotes |
) |
T292 |
1338-1350 |
JJ |
denotes |
interallelic |
T293 |
1366-1368 |
, |
denotes |
, |
T294 |
1368-1369 |
DT |
denotes |
a |
T295 |
1370-1380 |
NN |
denotes |
phenomenon |
T296 |
1381-1387 |
RB |
denotes |
rarely |
T297 |
1388-1396 |
VBN |
denotes |
reported |
T298 |
1397-1399 |
IN |
denotes |
at |
T299 |
1400-1410 |
RB |
denotes |
clinically |
T300 |
1411-1419 |
JJ |
denotes |
relevant |
T301 |
1420-1424 |
NNS |
denotes |
loci |
T302 |
1425-1427 |
IN |
denotes |
in |
T303 |
1428-1435 |
NNS |
denotes |
mammals |
T304 |
1435-1436 |
. |
denotes |
. |
T305 |
1436-1662 |
sentence |
denotes |
Our data suggest a re-evaluation of the contribution of “null” alleles to XPD disorders and highlight the potential of combinations of recessive alleles to affect both normal and pathological phenotypic plasticity in mammals. |
T306 |
1437-1440 |
PRP$ |
denotes |
Our |
T307 |
1441-1445 |
NNS |
denotes |
data |
T308 |
1446-1453 |
VBP |
denotes |
suggest |
T309 |
1454-1455 |
DT |
denotes |
a |
T310 |
1456-1469 |
NN |
denotes |
re-evaluation |
T311 |
1470-1472 |
IN |
denotes |
of |
T312 |
1473-1476 |
DT |
denotes |
the |
T313 |
1477-1489 |
NN |
denotes |
contribution |
T314 |
1490-1492 |
IN |
denotes |
of |
T315 |
1493-1494 |
`` |
denotes |
“ |
T316 |
1494-1498 |
JJ |
denotes |
null |
T317 |
1500-1507 |
NNS |
denotes |
alleles |
T318 |
1498-1499 |
'' |
denotes |
” |
T319 |
1508-1510 |
IN |
denotes |
to |
T320 |
1511-1514 |
NN |
denotes |
XPD |
T321 |
1515-1524 |
NNS |
denotes |
disorders |
T322 |
1525-1528 |
CC |
denotes |
and |
T323 |
1529-1538 |
VBP |
denotes |
highlight |
T324 |
1539-1542 |
DT |
denotes |
the |
T325 |
1543-1552 |
NN |
denotes |
potential |
T326 |
1553-1555 |
IN |
denotes |
of |
T327 |
1556-1568 |
NNS |
denotes |
combinations |
T328 |
1569-1571 |
IN |
denotes |
of |
T329 |
1572-1581 |
JJ |
denotes |
recessive |
T330 |
1582-1589 |
NNS |
denotes |
alleles |
T331 |
1590-1592 |
TO |
denotes |
to |
T332 |
1593-1599 |
VB |
denotes |
affect |
T333 |
1600-1604 |
CC |
denotes |
both |
T334 |
1640-1650 |
NN |
denotes |
plasticity |
T335 |
1605-1611 |
JJ |
denotes |
normal |
T336 |
1612-1615 |
CC |
denotes |
and |
T337 |
1616-1628 |
JJ |
denotes |
pathological |
T338 |
1629-1639 |
JJ |
denotes |
phenotypic |
T339 |
1651-1653 |
IN |
denotes |
in |
T340 |
1654-1661 |
NNS |
denotes |
mammals |
T341 |
1661-1662 |
. |
denotes |
. |
T565 |
1900-1912 |
JJ |
denotes |
Interallelic |
T566 |
1913-1928 |
NN |
denotes |
complementation |
T567 |
1932-1939 |
VBN |
denotes |
defined |
T568 |
1929-1931 |
VBZ |
denotes |
is |
T569 |
1940-1942 |
IN |
denotes |
as |
T570 |
1943-1946 |
DT |
denotes |
the |
T571 |
1947-1954 |
NN |
denotes |
ability |
T572 |
1955-1957 |
IN |
denotes |
of |
T573 |
1958-1961 |
CD |
denotes |
two |
T574 |
1985-1992 |
NNS |
denotes |
alleles |
T575 |
1962-1976 |
RB |
denotes |
differentially |
T576 |
1977-1984 |
VBN |
denotes |
mutated |
T577 |
1993-1995 |
TO |
denotes |
to |
T578 |
1996-2004 |
VB |
denotes |
function |
T579 |
2005-2011 |
RBR |
denotes |
better |
T580 |
2012-2020 |
RB |
denotes |
together |
T581 |
2021-2025 |
IN |
denotes |
than |
T582 |
2033-2036 |
MD |
denotes |
can |
T583 |
2026-2032 |
DT |
denotes |
either |
T584 |
2037-2039 |
IN |
denotes |
on |
T585 |
2040-2043 |
PRP$ |
denotes |
its |
T586 |
2044-2047 |
JJ |
denotes |
own |
T587 |
2047-2048 |
. |
denotes |
. |
T588 |
2048-2195 |
sentence |
denotes |
Despite its near universality in lower organisms [1], its potential to contribute to clinical heterogeneity in human disease is seldom considered. |
T589 |
2049-2056 |
IN |
denotes |
Despite |
T590 |
2184-2194 |
VBN |
denotes |
considered |
T591 |
2057-2060 |
PRP$ |
denotes |
its |
T592 |
2066-2078 |
NN |
denotes |
universality |
T593 |
2061-2065 |
JJ |
denotes |
near |
T594 |
2079-2081 |
IN |
denotes |
in |
T595 |
2082-2087 |
JJR |
denotes |
lower |
T596 |
2088-2097 |
NNS |
denotes |
organisms |
T597 |
2098-2099 |
-LRB- |
denotes |
[ |
T598 |
2099-2100 |
CD |
denotes |
1 |
T599 |
2100-2101 |
-RRB- |
denotes |
] |
T600 |
2101-2103 |
, |
denotes |
, |
T601 |
2103-2106 |
PRP$ |
denotes |
its |
T602 |
2107-2116 |
NN |
denotes |
potential |
T603 |
2117-2119 |
TO |
denotes |
to |
T604 |
2120-2130 |
VB |
denotes |
contribute |
T605 |
2131-2133 |
IN |
denotes |
to |
T606 |
2134-2142 |
JJ |
denotes |
clinical |
T607 |
2143-2156 |
NN |
denotes |
heterogeneity |
T608 |
2157-2159 |
IN |
denotes |
in |
T609 |
2160-2165 |
JJ |
denotes |
human |
T610 |
2166-2173 |
NN |
denotes |
disease |
T611 |
2174-2176 |
VBZ |
denotes |
is |
T612 |
2177-2183 |
RB |
denotes |
seldom |
T613 |
2194-2195 |
. |
denotes |
. |
T614 |
2195-2523 |
sentence |
denotes |
Evidence of interallelic complementation at clinically relevant loci is limited to biochemical and cell-based studies of a handful of metabolic disorders with defects in enzymes including propinyl-CoA carboxylase [2], argininosuccinate lyase [3], galactose-1-phosphate uridylyltransferase [4], and methylmalonyl CoA mutase [5]. |
T615 |
2196-2204 |
NN |
denotes |
Evidence |
T616 |
2268-2275 |
VBN |
denotes |
limited |
T617 |
2205-2207 |
IN |
denotes |
of |
T618 |
2208-2220 |
JJ |
denotes |
interallelic |
T619 |
2221-2236 |
NN |
denotes |
complementation |
T620 |
2237-2239 |
IN |
denotes |
at |
T621 |
2240-2250 |
RB |
denotes |
clinically |
T622 |
2251-2259 |
JJ |
denotes |
relevant |
T623 |
2260-2264 |
NNS |
denotes |
loci |
T624 |
2265-2267 |
VBZ |
denotes |
is |
T625 |
2276-2278 |
IN |
denotes |
to |
T626 |
2279-2290 |
JJ |
denotes |
biochemical |
T627 |
2306-2313 |
NNS |
denotes |
studies |
T628 |
2291-2294 |
CC |
denotes |
and |
T629 |
2295-2299 |
NN |
denotes |
cell |
T630 |
2300-2305 |
VBN |
denotes |
based |
T631 |
2299-2300 |
HYPH |
denotes |
- |
T632 |
2314-2316 |
IN |
denotes |
of |
T633 |
2317-2318 |
DT |
denotes |
a |
T634 |
2319-2326 |
NN |
denotes |
handful |
T635 |
2327-2329 |
IN |
denotes |
of |
T636 |
2330-2339 |
JJ |
denotes |
metabolic |
T637 |
2340-2349 |
NNS |
denotes |
disorders |
T638 |
2350-2354 |
IN |
denotes |
with |
T639 |
2355-2362 |
NNS |
denotes |
defects |
T640 |
2363-2365 |
IN |
denotes |
in |
T641 |
2366-2373 |
NNS |
denotes |
enzymes |
T642 |
2374-2383 |
VBG |
denotes |
including |
T643 |
2384-2392 |
NN |
denotes |
propinyl |
T644 |
2393-2396 |
NN |
denotes |
CoA |
T645 |
2392-2393 |
HYPH |
denotes |
- |
T646 |
2397-2408 |
NN |
denotes |
carboxylase |
T647 |
2409-2410 |
-LRB- |
denotes |
[ |
T648 |
2410-2411 |
CD |
denotes |
2 |
T649 |
2411-2412 |
-RRB- |
denotes |
] |
T650 |
2412-2414 |
, |
denotes |
, |
T651 |
2414-2431 |
NN |
denotes |
argininosuccinate |
T652 |
2432-2437 |
NN |
denotes |
lyase |
T653 |
2438-2439 |
-LRB- |
denotes |
[ |
T654 |
2439-2440 |
CD |
denotes |
3 |
T655 |
2440-2441 |
-RRB- |
denotes |
] |
T656 |
2441-2443 |
, |
denotes |
, |
T657 |
2443-2452 |
NN |
denotes |
galactose |
T658 |
2455-2464 |
NN |
denotes |
phosphate |
T659 |
2452-2453 |
HYPH |
denotes |
- |
T660 |
2453-2454 |
CD |
denotes |
1 |
T661 |
2454-2455 |
HYPH |
denotes |
- |
T662 |
2465-2484 |
NN |
denotes |
uridylyltransferase |
T663 |
2485-2486 |
-LRB- |
denotes |
[ |
T664 |
2486-2487 |
CD |
denotes |
4 |
T665 |
2487-2488 |
-RRB- |
denotes |
] |
T666 |
2488-2490 |
, |
denotes |
, |
T667 |
2490-2493 |
CC |
denotes |
and |
T668 |
2494-2507 |
NN |
denotes |
methylmalonyl |
T669 |
2512-2518 |
NN |
denotes |
mutase |
T670 |
2508-2511 |
NN |
denotes |
CoA |
T671 |
2519-2520 |
-LRB- |
denotes |
[ |
T672 |
2520-2521 |
CD |
denotes |
5 |
T673 |
2521-2522 |
-RRB- |
denotes |
] |
T674 |
2522-2523 |
. |
denotes |
. |
T675 |
2523-2618 |
sentence |
denotes |
Compound heterozygotes are individuals carrying two different mutant alleles of the same gene. |
T676 |
2524-2532 |
JJ |
denotes |
Compound |
T677 |
2533-2546 |
NNS |
denotes |
heterozygotes |
T678 |
2547-2550 |
VBP |
denotes |
are |
T679 |
2551-2562 |
NNS |
denotes |
individuals |
T680 |
2563-2571 |
VBG |
denotes |
carrying |
T681 |
2572-2575 |
CD |
denotes |
two |
T682 |
2593-2600 |
NNS |
denotes |
alleles |
T683 |
2576-2585 |
JJ |
denotes |
different |
T684 |
2586-2592 |
JJ |
denotes |
mutant |
T685 |
2601-2603 |
IN |
denotes |
of |
T686 |
2604-2607 |
DT |
denotes |
the |
T687 |
2613-2617 |
NN |
denotes |
gene |
T688 |
2608-2612 |
JJ |
denotes |
same |
T689 |
2617-2618 |
. |
denotes |
. |
T690 |
2618-2847 |
sentence |
denotes |
In the absence of a dominant (wild-type [wt]) allele, genetic interactions between recessive alleles (referred to here as “biallelic” effects) could result in different phenotypic outcomes including interallelic complementation. |
T691 |
2619-2621 |
IN |
denotes |
In |
T692 |
2768-2774 |
VB |
denotes |
result |
T693 |
2622-2625 |
DT |
denotes |
the |
T694 |
2626-2633 |
NN |
denotes |
absence |
T695 |
2634-2636 |
IN |
denotes |
of |
T696 |
2637-2638 |
DT |
denotes |
a |
T697 |
2665-2671 |
NN |
denotes |
allele |
T698 |
2639-2647 |
JJ |
denotes |
dominant |
T699 |
2648-2649 |
-LRB- |
denotes |
( |
T700 |
2649-2653 |
JJ |
denotes |
wild |
T701 |
2654-2658 |
NN |
denotes |
type |
T702 |
2653-2654 |
HYPH |
denotes |
- |
T703 |
2659-2660 |
-LRB- |
denotes |
[ |
T704 |
2660-2662 |
NN |
denotes |
wt |
T705 |
2662-2663 |
-RRB- |
denotes |
] |
T706 |
2663-2664 |
-RRB- |
denotes |
) |
T707 |
2671-2673 |
, |
denotes |
, |
T708 |
2673-2680 |
JJ |
denotes |
genetic |
T709 |
2681-2693 |
NNS |
denotes |
interactions |
T710 |
2694-2701 |
IN |
denotes |
between |
T711 |
2702-2711 |
JJ |
denotes |
recessive |
T712 |
2712-2719 |
NNS |
denotes |
alleles |
T713 |
2720-2721 |
-LRB- |
denotes |
( |
T714 |
2721-2729 |
VBN |
denotes |
referred |
T715 |
2730-2732 |
IN |
denotes |
to |
T716 |
2733-2737 |
RB |
denotes |
here |
T717 |
2738-2740 |
IN |
denotes |
as |
T718 |
2741-2742 |
`` |
denotes |
“ |
T719 |
2742-2751 |
JJ |
denotes |
biallelic |
T720 |
2753-2760 |
NNS |
denotes |
effects |
T721 |
2751-2752 |
'' |
denotes |
” |
T722 |
2760-2761 |
-RRB- |
denotes |
) |
T723 |
2762-2767 |
MD |
denotes |
could |
T724 |
2775-2777 |
IN |
denotes |
in |
T725 |
2778-2787 |
JJ |
denotes |
different |
T726 |
2799-2807 |
NNS |
denotes |
outcomes |
T727 |
2788-2798 |
JJ |
denotes |
phenotypic |
T728 |
2808-2817 |
VBG |
denotes |
including |
T729 |
2818-2830 |
JJ |
denotes |
interallelic |
T730 |
2831-2846 |
NN |
denotes |
complementation |
T731 |
2846-2847 |
. |
denotes |
. |
T732 |
2847-3183 |
sentence |
denotes |
Although amelioration of disease symptoms by interallelic complementation would create an ascertainment bias in the clinic, the lack of evidence concerning interallelic complementation or other biallelic effects in human disease is likely caused by the difficulty in distinguishing such effects from environment and genetic background. |
T733 |
2848-2856 |
IN |
denotes |
Although |
T734 |
2928-2934 |
VB |
denotes |
create |
T735 |
2857-2869 |
NN |
denotes |
amelioration |
T736 |
2870-2872 |
IN |
denotes |
of |
T737 |
2873-2880 |
NN |
denotes |
disease |
T738 |
2881-2889 |
NNS |
denotes |
symptoms |
T739 |
2890-2892 |
IN |
denotes |
by |
T740 |
2893-2905 |
JJ |
denotes |
interallelic |
T741 |
2906-2921 |
NN |
denotes |
complementation |
T742 |
2922-2927 |
MD |
denotes |
would |
T743 |
3087-3093 |
VBN |
denotes |
caused |
T744 |
2935-2937 |
DT |
denotes |
an |
T745 |
2952-2956 |
NN |
denotes |
bias |
T746 |
2938-2951 |
NN |
denotes |
ascertainment |
T747 |
2957-2959 |
IN |
denotes |
in |
T748 |
2960-2963 |
DT |
denotes |
the |
T749 |
2964-2970 |
NN |
denotes |
clinic |
T750 |
2970-2972 |
, |
denotes |
, |
T751 |
2972-2975 |
DT |
denotes |
the |
T752 |
2976-2980 |
NN |
denotes |
lack |
T753 |
2981-2983 |
IN |
denotes |
of |
T754 |
2984-2992 |
NN |
denotes |
evidence |
T755 |
2993-3003 |
VBG |
denotes |
concerning |
T756 |
3004-3016 |
JJ |
denotes |
interallelic |
T757 |
3017-3032 |
NN |
denotes |
complementation |
T758 |
3033-3035 |
CC |
denotes |
or |
T759 |
3036-3041 |
JJ |
denotes |
other |
T760 |
3052-3059 |
NNS |
denotes |
effects |
T761 |
3042-3051 |
JJ |
denotes |
biallelic |
T762 |
3060-3062 |
IN |
denotes |
in |
T763 |
3063-3068 |
JJ |
denotes |
human |
T764 |
3069-3076 |
NN |
denotes |
disease |
T765 |
3077-3079 |
VBZ |
denotes |
is |
T766 |
3080-3086 |
RB |
denotes |
likely |
T767 |
3094-3096 |
IN |
denotes |
by |
T768 |
3097-3100 |
DT |
denotes |
the |
T769 |
3101-3111 |
NN |
denotes |
difficulty |
T770 |
3112-3114 |
IN |
denotes |
in |
T771 |
3115-3129 |
VBG |
denotes |
distinguishing |
T772 |
3130-3134 |
JJ |
denotes |
such |
T773 |
3135-3142 |
NNS |
denotes |
effects |
T774 |
3143-3147 |
IN |
denotes |
from |
T775 |
3148-3159 |
NN |
denotes |
environment |
T776 |
3160-3163 |
CC |
denotes |
and |
T777 |
3164-3171 |
JJ |
denotes |
genetic |
T778 |
3172-3182 |
NN |
denotes |
background |
T779 |
3182-3183 |
. |
denotes |
. |
T780 |
3183-3484 |
sentence |
denotes |
XPD encodes one of the two helicase components of basal transcription/DNA repair factor IIH (TFIIH), a ten-subunit, multifunctional complex that is essential for multiple processes, including basal transcription initiation and DNA damage repair via the nucleotide excision repair (NER) pathway [6,7]. |
T781 |
3184-3187 |
NN |
denotes |
XPD |
T782 |
3188-3195 |
VBZ |
denotes |
encodes |
T783 |
3196-3199 |
CD |
denotes |
one |
T784 |
3200-3202 |
IN |
denotes |
of |
T785 |
3203-3206 |
DT |
denotes |
the |
T786 |
3220-3230 |
NNS |
denotes |
components |
T787 |
3207-3210 |
CD |
denotes |
two |
T788 |
3211-3219 |
NN |
denotes |
helicase |
T789 |
3231-3233 |
IN |
denotes |
of |
T790 |
3234-3239 |
JJ |
denotes |
basal |
T791 |
3272-3275 |
NN |
denotes |
IIH |
T792 |
3240-3253 |
NN |
denotes |
transcription |
T793 |
3253-3254 |
HYPH |
denotes |
/ |
T794 |
3254-3257 |
NN |
denotes |
DNA |
T795 |
3258-3264 |
NN |
denotes |
repair |
T796 |
3265-3271 |
NN |
denotes |
factor |
T797 |
3276-3277 |
-LRB- |
denotes |
( |
T798 |
3277-3282 |
NN |
denotes |
TFIIH |
T799 |
3282-3283 |
-RRB- |
denotes |
) |
T800 |
3283-3285 |
, |
denotes |
, |
T801 |
3285-3286 |
DT |
denotes |
a |
T802 |
3316-3323 |
NN |
denotes |
complex |
T803 |
3287-3290 |
CD |
denotes |
ten |
T804 |
3291-3298 |
NN |
denotes |
subunit |
T805 |
3290-3291 |
HYPH |
denotes |
- |
T806 |
3298-3300 |
, |
denotes |
, |
T807 |
3300-3315 |
JJ |
denotes |
multifunctional |
T808 |
3324-3328 |
WDT |
denotes |
that |
T809 |
3329-3331 |
VBZ |
denotes |
is |
T810 |
3332-3341 |
JJ |
denotes |
essential |
T811 |
3342-3345 |
IN |
denotes |
for |
T812 |
3346-3354 |
JJ |
denotes |
multiple |
T813 |
3355-3364 |
NNS |
denotes |
processes |
T814 |
3364-3366 |
, |
denotes |
, |
T815 |
3366-3375 |
VBG |
denotes |
including |
T816 |
3376-3381 |
JJ |
denotes |
basal |
T817 |
3396-3406 |
NN |
denotes |
initiation |
T818 |
3382-3395 |
NN |
denotes |
transcription |
T819 |
3407-3410 |
CC |
denotes |
and |
T820 |
3411-3414 |
NN |
denotes |
DNA |
T821 |
3422-3428 |
NN |
denotes |
repair |
T822 |
3415-3421 |
NN |
denotes |
damage |
T823 |
3429-3432 |
IN |
denotes |
via |
T824 |
3433-3436 |
DT |
denotes |
the |
T825 |
3470-3477 |
NN |
denotes |
pathway |
T826 |
3437-3447 |
NN |
denotes |
nucleotide |
T827 |
3457-3463 |
NN |
denotes |
repair |
T828 |
3448-3456 |
NN |
denotes |
excision |
T829 |
3464-3465 |
-LRB- |
denotes |
( |
T830 |
3465-3468 |
NN |
denotes |
NER |
T831 |
3468-3469 |
-RRB- |
denotes |
) |
T832 |
3478-3479 |
-LRB- |
denotes |
[ |
T833 |
3481-3482 |
CD |
denotes |
7 |
T834 |
3479-3480 |
CD |
denotes |
6 |
T835 |
3480-3481 |
, |
denotes |
, |
T836 |
3482-3483 |
-RRB- |
denotes |
] |
T837 |
3483-3484 |
. |
denotes |
. |
T838 |
3484-3714 |
sentence |
denotes |
Alterations in XPD resulting in defective TFIIH function are associated with UV-sensitive, multisystem disorders including xeroderma pigmentosum (XP), XP combined with Cockayne syndrome (CS), and trichothiodystrophy (TTD) [8–10]. |
T839 |
3485-3496 |
NNS |
denotes |
Alterations |
T840 |
3546-3556 |
VBN |
denotes |
associated |
T841 |
3497-3499 |
IN |
denotes |
in |
T842 |
3500-3503 |
NN |
denotes |
XPD |
T843 |
3504-3513 |
VBG |
denotes |
resulting |
T844 |
3514-3516 |
IN |
denotes |
in |
T845 |
3517-3526 |
JJ |
denotes |
defective |
T846 |
3533-3541 |
NN |
denotes |
function |
T847 |
3527-3532 |
NN |
denotes |
TFIIH |
T848 |
3542-3545 |
VBP |
denotes |
are |
T849 |
3557-3561 |
IN |
denotes |
with |
T850 |
3562-3564 |
NN |
denotes |
UV |
T851 |
3565-3574 |
JJ |
denotes |
sensitive |
T852 |
3564-3565 |
HYPH |
denotes |
- |
T853 |
3588-3597 |
NNS |
denotes |
disorders |
T854 |
3574-3576 |
, |
denotes |
, |
T855 |
3576-3587 |
JJ |
denotes |
multisystem |
T856 |
3598-3607 |
VBG |
denotes |
including |
T857 |
3608-3617 |
NN |
denotes |
xeroderma |
T858 |
3618-3629 |
NN |
denotes |
pigmentosum |
T859 |
3630-3631 |
-LRB- |
denotes |
( |
T860 |
3631-3633 |
NN |
denotes |
XP |
T861 |
3633-3634 |
-RRB- |
denotes |
) |
T862 |
3634-3636 |
, |
denotes |
, |
T863 |
3636-3638 |
NN |
denotes |
XP |
T864 |
3639-3647 |
VBN |
denotes |
combined |
T865 |
3648-3652 |
IN |
denotes |
with |
T866 |
3653-3661 |
NN |
denotes |
Cockayne |
T867 |
3662-3670 |
NN |
denotes |
syndrome |
T868 |
3671-3672 |
-LRB- |
denotes |
( |
T869 |
3672-3674 |
NN |
denotes |
CS |
T870 |
3674-3675 |
-RRB- |
denotes |
) |
T871 |
3675-3677 |
, |
denotes |
, |
T872 |
3677-3680 |
CC |
denotes |
and |
T873 |
3681-3700 |
NN |
denotes |
trichothiodystrophy |
T874 |
3701-3702 |
-LRB- |
denotes |
( |
T875 |
3702-3705 |
NN |
denotes |
TTD |
T876 |
3705-3706 |
-RRB- |
denotes |
) |
T877 |
3707-3708 |
-LRB- |
denotes |
[ |
T878 |
3708-3709 |
CD |
denotes |
8 |
T879 |
3709-3710 |
SYM |
denotes |
– |
T880 |
3710-3712 |
CD |
denotes |
10 |
T881 |
3712-3713 |
-RRB- |
denotes |
] |
T882 |
3713-3714 |
. |
denotes |
. |
T883 |
3714-3826 |
sentence |
denotes |
XP is marked by sun-induced pigmentation anomalies and a greater than 1,000-fold elevation in skin cancer risk. |
T884 |
3715-3717 |
NN |
denotes |
XP |
T885 |
3721-3727 |
VBN |
denotes |
marked |
T886 |
3718-3720 |
VBZ |
denotes |
is |
T887 |
3728-3730 |
IN |
denotes |
by |
T888 |
3731-3734 |
NN |
denotes |
sun |
T889 |
3735-3742 |
VBN |
denotes |
induced |
T890 |
3734-3735 |
HYPH |
denotes |
- |
T891 |
3756-3765 |
NNS |
denotes |
anomalies |
T892 |
3743-3755 |
NN |
denotes |
pigmentation |
T893 |
3766-3769 |
CC |
denotes |
and |
T894 |
3770-3771 |
DT |
denotes |
a |
T895 |
3796-3805 |
NN |
denotes |
elevation |
T896 |
3772-3779 |
JJR |
denotes |
greater |
T897 |
3785-3790 |
CD |
denotes |
1,000 |
T898 |
3780-3784 |
IN |
denotes |
than |
T899 |
3791-3795 |
RB |
denotes |
fold |
T900 |
3790-3791 |
HYPH |
denotes |
- |
T901 |
3806-3808 |
IN |
denotes |
in |
T902 |
3809-3813 |
NN |
denotes |
skin |
T903 |
3814-3820 |
NN |
denotes |
cancer |
T904 |
3821-3825 |
NN |
denotes |
risk |
T905 |
3825-3826 |
. |
denotes |
. |
T906 |
3826-3916 |
sentence |
denotes |
Severe cases can also present with growth retardation and primary neurodegeneration [11]. |
T907 |
3827-3833 |
JJ |
denotes |
Severe |
T908 |
3834-3839 |
NNS |
denotes |
cases |
T909 |
3849-3856 |
VB |
denotes |
present |
T910 |
3840-3843 |
MD |
denotes |
can |
T911 |
3844-3848 |
RB |
denotes |
also |
T912 |
3857-3861 |
IN |
denotes |
with |
T913 |
3862-3868 |
NN |
denotes |
growth |
T914 |
3869-3880 |
NN |
denotes |
retardation |
T915 |
3881-3884 |
CC |
denotes |
and |
T916 |
3885-3892 |
JJ |
denotes |
primary |
T917 |
3893-3910 |
NN |
denotes |
neurodegeneration |
T918 |
3911-3912 |
-LRB- |
denotes |
[ |
T919 |
3912-3914 |
CD |
denotes |
11 |
T920 |
3914-3915 |
-RRB- |
denotes |
] |
T921 |
3915-3916 |
. |
denotes |
. |
T922 |
3916-4151 |
sentence |
denotes |
CS and TTD, on the other hand, are segmental progeroid disorders characterised by progressive post-natal growth failure and primary demyelination resulting in severe neurodysfunction, but without a clear cancer predisposition [12–15]. |
T923 |
3917-3919 |
NN |
denotes |
CS |
T924 |
3948-3951 |
VBP |
denotes |
are |
T925 |
3920-3923 |
CC |
denotes |
and |
T926 |
3924-3927 |
NN |
denotes |
TTD |
T927 |
3927-3929 |
, |
denotes |
, |
T928 |
3929-3931 |
IN |
denotes |
on |
T929 |
3932-3935 |
DT |
denotes |
the |
T930 |
3942-3946 |
NN |
denotes |
hand |
T931 |
3936-3941 |
JJ |
denotes |
other |
T932 |
3946-3948 |
, |
denotes |
, |
T933 |
3952-3961 |
JJ |
denotes |
segmental |
T934 |
3972-3981 |
NNS |
denotes |
disorders |
T935 |
3962-3971 |
JJ |
denotes |
progeroid |
T936 |
3982-3995 |
VBN |
denotes |
characterised |
T937 |
3996-3998 |
IN |
denotes |
by |
T938 |
3999-4010 |
JJ |
denotes |
progressive |
T939 |
4029-4036 |
NN |
denotes |
failure |
T940 |
4011-4021 |
JJ |
denotes |
post-natal |
T941 |
4022-4028 |
NN |
denotes |
growth |
T942 |
4037-4040 |
CC |
denotes |
and |
T943 |
4041-4048 |
JJ |
denotes |
primary |
T944 |
4049-4062 |
NN |
denotes |
demyelination |
T945 |
4063-4072 |
VBG |
denotes |
resulting |
T946 |
4073-4075 |
IN |
denotes |
in |
T947 |
4076-4082 |
JJ |
denotes |
severe |
T948 |
4083-4099 |
NN |
denotes |
neurodysfunction |
T949 |
4099-4101 |
, |
denotes |
, |
T950 |
4101-4104 |
CC |
denotes |
but |
T951 |
4105-4112 |
IN |
denotes |
without |
T952 |
4113-4114 |
DT |
denotes |
a |
T953 |
4128-4142 |
NN |
denotes |
predisposition |
T954 |
4115-4120 |
JJ |
denotes |
clear |
T955 |
4121-4127 |
NN |
denotes |
cancer |
T956 |
4143-4144 |
-LRB- |
denotes |
[ |
T957 |
4144-4146 |
CD |
denotes |
12 |
T958 |
4146-4147 |
SYM |
denotes |
– |
T959 |
4147-4149 |
CD |
denotes |
15 |
T960 |
4149-4150 |
-RRB- |
denotes |
] |
T961 |
4150-4151 |
. |
denotes |
. |
T962 |
4151-4339 |
sentence |
denotes |
Patients with TTD additionally display hallmark sulphur-deficient brittle hair and nails and scaling skin [13], resulting from a basal transcription defect in specific cell types [16,17]. |
T963 |
4152-4160 |
NNS |
denotes |
Patients |
T964 |
4183-4190 |
VBP |
denotes |
display |
T965 |
4161-4165 |
IN |
denotes |
with |
T966 |
4166-4169 |
NN |
denotes |
TTD |
T967 |
4170-4182 |
RB |
denotes |
additionally |
T968 |
4191-4199 |
NN |
denotes |
hallmark |
T969 |
4226-4230 |
NN |
denotes |
hair |
T970 |
4200-4207 |
NN |
denotes |
sulphur |
T971 |
4208-4217 |
JJ |
denotes |
deficient |
T972 |
4207-4208 |
HYPH |
denotes |
- |
T973 |
4218-4225 |
JJ |
denotes |
brittle |
T974 |
4231-4234 |
CC |
denotes |
and |
T975 |
4235-4240 |
NNS |
denotes |
nails |
T976 |
4241-4244 |
CC |
denotes |
and |
T977 |
4245-4252 |
JJ |
denotes |
scaling |
T978 |
4253-4257 |
NN |
denotes |
skin |
T979 |
4258-4259 |
-LRB- |
denotes |
[ |
T980 |
4259-4261 |
CD |
denotes |
13 |
T981 |
4261-4262 |
-RRB- |
denotes |
] |
T982 |
4262-4264 |
, |
denotes |
, |
T983 |
4264-4273 |
VBG |
denotes |
resulting |
T984 |
4274-4278 |
IN |
denotes |
from |
T985 |
4279-4280 |
DT |
denotes |
a |
T986 |
4301-4307 |
NN |
denotes |
defect |
T987 |
4281-4286 |
JJ |
denotes |
basal |
T988 |
4287-4300 |
NN |
denotes |
transcription |
T989 |
4308-4310 |
IN |
denotes |
in |
T990 |
4311-4319 |
JJ |
denotes |
specific |
T991 |
4325-4330 |
NNS |
denotes |
types |
T992 |
4320-4324 |
NN |
denotes |
cell |
T993 |
4331-4332 |
-LRB- |
denotes |
[ |
T994 |
4335-4337 |
CD |
denotes |
17 |
T995 |
4332-4334 |
CD |
denotes |
16 |
T996 |
4334-4335 |
, |
denotes |
, |
T997 |
4337-4338 |
-RRB- |
denotes |
] |
T998 |
4338-4339 |
. |
denotes |
. |
T999 |
4339-4505 |
sentence |
denotes |
A related disorder with the cancer predisposition of XP combined with the neurodevelopmental complications of CS (XPCS), although rare, has also been described [18]. |
T1000 |
4340-4341 |
DT |
denotes |
A |
T1001 |
4350-4358 |
NN |
denotes |
disorder |
T1002 |
4342-4349 |
JJ |
denotes |
related |
T1003 |
4490-4499 |
VBN |
denotes |
described |
T1004 |
4359-4363 |
IN |
denotes |
with |
T1005 |
4364-4367 |
DT |
denotes |
the |
T1006 |
4375-4389 |
NN |
denotes |
predisposition |
T1007 |
4368-4374 |
NN |
denotes |
cancer |
T1008 |
4390-4392 |
IN |
denotes |
of |
T1009 |
4393-4395 |
NN |
denotes |
XP |
T1010 |
4396-4404 |
VBN |
denotes |
combined |
T1011 |
4405-4409 |
IN |
denotes |
with |
T1012 |
4410-4413 |
DT |
denotes |
the |
T1013 |
4433-4446 |
NNS |
denotes |
complications |
T1014 |
4414-4432 |
JJ |
denotes |
neurodevelopmental |
T1015 |
4447-4449 |
IN |
denotes |
of |
T1016 |
4450-4452 |
NN |
denotes |
CS |
T1017 |
4453-4454 |
-LRB- |
denotes |
( |
T1018 |
4454-4458 |
NN |
denotes |
XPCS |
T1019 |
4458-4459 |
-RRB- |
denotes |
) |
T1020 |
4459-4461 |
, |
denotes |
, |
T1021 |
4461-4469 |
IN |
denotes |
although |
T1022 |
4470-4474 |
JJ |
denotes |
rare |
T1023 |
4474-4476 |
, |
denotes |
, |
T1024 |
4476-4479 |
VBZ |
denotes |
has |
T1025 |
4480-4484 |
RB |
denotes |
also |
T1026 |
4485-4489 |
VBN |
denotes |
been |
T1027 |
4500-4501 |
-LRB- |
denotes |
[ |
T1028 |
4501-4503 |
CD |
denotes |
18 |
T1029 |
4503-4504 |
-RRB- |
denotes |
] |
T1030 |
4504-4505 |
. |
denotes |
. |
T1031 |
4505-4687 |
sentence |
denotes |
Many XPD mutations are associated with an exclusive disease phenotype (e.g., XPDR722W with TTD and XPDR683W with XP) and are thus viewed as causative of the corresponding syndromes. |
T1032 |
4506-4510 |
JJ |
denotes |
Many |
T1033 |
4515-4524 |
NNS |
denotes |
mutations |
T1034 |
4511-4514 |
NN |
denotes |
XPD |
T1035 |
4529-4539 |
VBN |
denotes |
associated |
T1036 |
4525-4528 |
VBP |
denotes |
are |
T1037 |
4540-4544 |
IN |
denotes |
with |
T1038 |
4545-4547 |
DT |
denotes |
an |
T1039 |
4566-4575 |
NN |
denotes |
phenotype |
T1040 |
4548-4557 |
JJ |
denotes |
exclusive |
T1041 |
4558-4565 |
NN |
denotes |
disease |
T1042 |
4576-4577 |
-LRB- |
denotes |
( |
T1043 |
4583-4591 |
NN |
denotes |
XPDR722W |
T1044 |
4577-4581 |
FW |
denotes |
e.g. |
T1045 |
4581-4583 |
, |
denotes |
, |
T1046 |
4592-4596 |
IN |
denotes |
with |
T1047 |
4597-4600 |
NN |
denotes |
TTD |
T1048 |
4601-4604 |
CC |
denotes |
and |
T1049 |
4605-4613 |
NN |
denotes |
XPDR683W |
T1050 |
4614-4618 |
IN |
denotes |
with |
T1051 |
4619-4621 |
NN |
denotes |
XP |
T1052 |
4621-4622 |
-RRB- |
denotes |
) |
T1053 |
4623-4626 |
CC |
denotes |
and |
T1054 |
4627-4630 |
VBP |
denotes |
are |
T1055 |
4636-4642 |
VBN |
denotes |
viewed |
T1056 |
4631-4635 |
RB |
denotes |
thus |
T1057 |
4643-4645 |
IN |
denotes |
as |
T1058 |
4646-4655 |
JJ |
denotes |
causative |
T1059 |
4656-4658 |
IN |
denotes |
of |
T1060 |
4659-4662 |
DT |
denotes |
the |
T1061 |
4677-4686 |
NNS |
denotes |
syndromes |
T1062 |
4663-4676 |
VBG |
denotes |
corresponding |
T1063 |
4686-4687 |
. |
denotes |
. |
T1064 |
4687-4786 |
sentence |
denotes |
Alleles not associated exclusively with one disorder are considered “likely null” alleles [19,20]. |
T1065 |
4688-4695 |
NNS |
denotes |
Alleles |
T1066 |
4745-4755 |
VBN |
denotes |
considered |
T1067 |
4696-4699 |
RB |
denotes |
not |
T1068 |
4700-4710 |
VBN |
denotes |
associated |
T1069 |
4711-4722 |
RB |
denotes |
exclusively |
T1070 |
4723-4727 |
IN |
denotes |
with |
T1071 |
4728-4731 |
CD |
denotes |
one |
T1072 |
4732-4740 |
NN |
denotes |
disorder |
T1073 |
4741-4744 |
VBP |
denotes |
are |
T1074 |
4756-4757 |
`` |
denotes |
“ |
T1075 |
4770-4777 |
NNS |
denotes |
alleles |
T1076 |
4757-4763 |
RB |
denotes |
likely |
T1077 |
4764-4768 |
JJ |
denotes |
null |
T1078 |
4768-4769 |
'' |
denotes |
” |
T1079 |
4778-4779 |
-LRB- |
denotes |
[ |
T1080 |
4782-4784 |
CD |
denotes |
20 |
T1081 |
4779-4781 |
CD |
denotes |
19 |
T1082 |
4781-4782 |
, |
denotes |
, |
T1083 |
4784-4785 |
-RRB- |
denotes |
] |
T1084 |
4785-4786 |
. |
denotes |
. |
T1085 |
4786-5006 |
sentence |
denotes |
Some of these alleles fail to support viability in a haploid Schizosaccharomyces pombe yeast strain with a null mutation in the XPD homologue rad15 and are thus considered devoid of significant biological activity [19]. |
T1086 |
4787-4791 |
DT |
denotes |
Some |
T1087 |
4809-4813 |
VBP |
denotes |
fail |
T1088 |
4792-4794 |
IN |
denotes |
of |
T1089 |
4795-4800 |
DT |
denotes |
these |
T1090 |
4801-4808 |
NNS |
denotes |
alleles |
T1091 |
4814-4816 |
TO |
denotes |
to |
T1092 |
4817-4824 |
VB |
denotes |
support |
T1093 |
4825-4834 |
NN |
denotes |
viability |
T1094 |
4835-4837 |
IN |
denotes |
in |
T1095 |
4838-4839 |
DT |
denotes |
a |
T1096 |
4880-4886 |
NN |
denotes |
strain |
T1097 |
4840-4847 |
JJ |
denotes |
haploid |
T1098 |
4848-4867 |
NNP |
denotes |
Schizosaccharomyces |
T1099 |
4868-4873 |
NNP |
denotes |
pombe |
T1100 |
4874-4879 |
NN |
denotes |
yeast |
T1101 |
4887-4891 |
IN |
denotes |
with |
T1102 |
4892-4893 |
DT |
denotes |
a |
T1103 |
4899-4907 |
NN |
denotes |
mutation |
T1104 |
4894-4898 |
JJ |
denotes |
null |
T1105 |
4908-4910 |
IN |
denotes |
in |
T1106 |
4911-4914 |
DT |
denotes |
the |
T1107 |
4929-4934 |
NN |
denotes |
rad15 |
T1108 |
4915-4918 |
NN |
denotes |
XPD |
T1109 |
4919-4928 |
NN |
denotes |
homologue |
T1110 |
4935-4938 |
CC |
denotes |
and |
T1111 |
4939-4942 |
VBP |
denotes |
are |
T1112 |
4948-4958 |
VBN |
denotes |
considered |
T1113 |
4943-4947 |
RB |
denotes |
thus |
T1114 |
4959-4965 |
JJ |
denotes |
devoid |
T1115 |
4966-4968 |
IN |
denotes |
of |
T1116 |
4969-4980 |
JJ |
denotes |
significant |
T1117 |
4992-5000 |
NN |
denotes |
activity |
T1118 |
4981-4991 |
JJ |
denotes |
biological |
T1119 |
5001-5002 |
-LRB- |
denotes |
[ |
T1120 |
5002-5004 |
CD |
denotes |
19 |
T1121 |
5004-5005 |
-RRB- |
denotes |
] |
T1122 |
5005-5006 |
. |
denotes |
. |
T1123 |
5006-5144 |
sentence |
denotes |
This classification of alleles as either causative or null currently defines what we refer to as a “monoallelic” paradigm of XPD disease. |
T1124 |
5007-5011 |
DT |
denotes |
This |
T1125 |
5012-5026 |
NN |
denotes |
classification |
T1126 |
5076-5083 |
VBZ |
denotes |
defines |
T1127 |
5027-5029 |
IN |
denotes |
of |
T1128 |
5030-5037 |
NNS |
denotes |
alleles |
T1129 |
5038-5040 |
IN |
denotes |
as |
T1130 |
5041-5047 |
CC |
denotes |
either |
T1131 |
5048-5057 |
JJ |
denotes |
causative |
T1132 |
5058-5060 |
CC |
denotes |
or |
T1133 |
5061-5065 |
JJ |
denotes |
null |
T1134 |
5066-5075 |
RB |
denotes |
currently |
T1135 |
5084-5088 |
WP |
denotes |
what |
T1136 |
5092-5097 |
VBP |
denotes |
refer |
T1137 |
5089-5091 |
PRP |
denotes |
we |
T1138 |
5098-5100 |
IN |
denotes |
to |
T1139 |
5101-5103 |
IN |
denotes |
as |
T1140 |
5104-5105 |
DT |
denotes |
a |
T1141 |
5120-5128 |
NN |
denotes |
paradigm |
T1142 |
5106-5107 |
`` |
denotes |
“ |
T1143 |
5107-5118 |
JJ |
denotes |
monoallelic |
T1144 |
5118-5119 |
'' |
denotes |
” |
T1145 |
5129-5131 |
IN |
denotes |
of |
T1146 |
5132-5135 |
NN |
denotes |
XPD |
T1147 |
5136-5143 |
NN |
denotes |
disease |
T1148 |
5143-5144 |
. |
denotes |
. |
T1149 |
5144-5425 |
sentence |
denotes |
However, the identification in recent years of XP complementation group D patients with atypical disease presentation, including symptoms of both XP and TTD [8], casts doubt on the ability of such a monoallelic paradigm to explain clinical heterogeneity in compound heterozygotes. |
T1150 |
5145-5152 |
RB |
denotes |
However |
T1151 |
5307-5312 |
VBZ |
denotes |
casts |
T1152 |
5152-5154 |
, |
denotes |
, |
T1153 |
5154-5157 |
DT |
denotes |
the |
T1154 |
5158-5172 |
NN |
denotes |
identification |
T1155 |
5173-5175 |
IN |
denotes |
in |
T1156 |
5176-5182 |
JJ |
denotes |
recent |
T1157 |
5183-5188 |
NNS |
denotes |
years |
T1158 |
5189-5191 |
IN |
denotes |
of |
T1159 |
5192-5194 |
NN |
denotes |
XP |
T1160 |
5219-5227 |
NNS |
denotes |
patients |
T1161 |
5195-5210 |
NN |
denotes |
complementation |
T1162 |
5211-5216 |
NN |
denotes |
group |
T1163 |
5217-5218 |
NN |
denotes |
D |
T1164 |
5228-5232 |
IN |
denotes |
with |
T1165 |
5233-5241 |
JJ |
denotes |
atypical |
T1166 |
5250-5262 |
NN |
denotes |
presentation |
T1167 |
5242-5249 |
NN |
denotes |
disease |
T1168 |
5262-5264 |
, |
denotes |
, |
T1169 |
5264-5273 |
VBG |
denotes |
including |
T1170 |
5274-5282 |
NNS |
denotes |
symptoms |
T1171 |
5283-5285 |
IN |
denotes |
of |
T1172 |
5286-5290 |
CC |
denotes |
both |
T1173 |
5291-5293 |
NN |
denotes |
XP |
T1174 |
5294-5297 |
CC |
denotes |
and |
T1175 |
5298-5301 |
NN |
denotes |
TTD |
T1176 |
5302-5303 |
-LRB- |
denotes |
[ |
T1177 |
5303-5304 |
CD |
denotes |
8 |
T1178 |
5304-5305 |
-RRB- |
denotes |
] |
T1179 |
5305-5307 |
, |
denotes |
, |
T1180 |
5313-5318 |
NN |
denotes |
doubt |
T1181 |
5319-5321 |
IN |
denotes |
on |
T1182 |
5322-5325 |
DT |
denotes |
the |
T1183 |
5326-5333 |
NN |
denotes |
ability |
T1184 |
5334-5336 |
IN |
denotes |
of |
T1185 |
5337-5341 |
JJ |
denotes |
such |
T1186 |
5356-5364 |
NN |
denotes |
paradigm |
T1187 |
5342-5343 |
DT |
denotes |
a |
T1188 |
5344-5355 |
JJ |
denotes |
monoallelic |
T1189 |
5365-5367 |
TO |
denotes |
to |
T1190 |
5368-5375 |
VB |
denotes |
explain |
T1191 |
5376-5384 |
JJ |
denotes |
clinical |
T1192 |
5385-5398 |
NN |
denotes |
heterogeneity |
T1193 |
5399-5401 |
IN |
denotes |
in |
T1194 |
5402-5410 |
NN |
denotes |
compound |
T1195 |
5411-5424 |
NNS |
denotes |
heterozygotes |
T1196 |
5424-5425 |
. |
denotes |
. |
T1197 |
5425-5524 |
sentence |
denotes |
Previously, we generated a TTD mouse model (XPDR722W) that phenocopies the human syndrome [15,21]. |
T1198 |
5426-5436 |
RB |
denotes |
Previously |
T1199 |
5441-5450 |
VBD |
denotes |
generated |
T1200 |
5436-5438 |
, |
denotes |
, |
T1201 |
5438-5440 |
PRP |
denotes |
we |
T1202 |
5451-5452 |
DT |
denotes |
a |
T1203 |
5463-5468 |
NN |
denotes |
model |
T1204 |
5453-5456 |
NN |
denotes |
TTD |
T1205 |
5457-5462 |
NN |
denotes |
mouse |
T1206 |
5469-5470 |
-LRB- |
denotes |
( |
T1207 |
5470-5478 |
NN |
denotes |
XPDR722W |
T1208 |
5478-5479 |
-RRB- |
denotes |
) |
T1209 |
5480-5484 |
WDT |
denotes |
that |
T1210 |
5485-5496 |
VBZ |
denotes |
phenocopies |
T1211 |
5497-5500 |
DT |
denotes |
the |
T1212 |
5507-5515 |
NN |
denotes |
syndrome |
T1213 |
5501-5506 |
JJ |
denotes |
human |
T1214 |
5516-5517 |
-LRB- |
denotes |
[ |
T1215 |
5520-5522 |
CD |
denotes |
21 |
T1216 |
5517-5519 |
CD |
denotes |
15 |
T1217 |
5519-5520 |
, |
denotes |
, |
T1218 |
5522-5523 |
-RRB- |
denotes |
] |
T1219 |
5523-5524 |
. |
denotes |
. |
T1220 |
5524-5815 |
sentence |
denotes |
Here we report the generation of additional mutant Xpd alleles that fail to support viability on their own but nevertheless ameliorate TTD-associated premature segmental ageing, cutaneous features, cellular DNA repair capacity, and UV survival when present in a compound heterozygote state. |
T1221 |
5525-5529 |
RB |
denotes |
Here |
T1222 |
5533-5539 |
VBP |
denotes |
report |
T1223 |
5530-5532 |
PRP |
denotes |
we |
T1224 |
5540-5543 |
DT |
denotes |
the |
T1225 |
5544-5554 |
NN |
denotes |
generation |
T1226 |
5555-5557 |
IN |
denotes |
of |
T1227 |
5558-5568 |
JJ |
denotes |
additional |
T1228 |
5580-5587 |
NNS |
denotes |
alleles |
T1229 |
5569-5575 |
JJ |
denotes |
mutant |
T1230 |
5576-5579 |
NN |
denotes |
Xpd |
T1231 |
5588-5592 |
WDT |
denotes |
that |
T1232 |
5593-5597 |
VBP |
denotes |
fail |
T1233 |
5598-5600 |
TO |
denotes |
to |
T1234 |
5601-5608 |
VB |
denotes |
support |
T1235 |
5609-5618 |
NN |
denotes |
viability |
T1236 |
5619-5621 |
IN |
denotes |
on |
T1237 |
5622-5627 |
PRP$ |
denotes |
their |
T1238 |
5628-5631 |
NN |
denotes |
own |
T1239 |
5632-5635 |
CC |
denotes |
but |
T1240 |
5636-5648 |
RB |
denotes |
nevertheless |
T1241 |
5649-5659 |
VBP |
denotes |
ameliorate |
T1242 |
5660-5663 |
NN |
denotes |
TTD |
T1243 |
5664-5674 |
VBN |
denotes |
associated |
T1244 |
5663-5664 |
HYPH |
denotes |
- |
T1245 |
5695-5701 |
NN |
denotes |
ageing |
T1246 |
5675-5684 |
JJ |
denotes |
premature |
T1247 |
5685-5694 |
JJ |
denotes |
segmental |
T1248 |
5701-5703 |
, |
denotes |
, |
T1249 |
5703-5712 |
JJ |
denotes |
cutaneous |
T1250 |
5713-5721 |
NNS |
denotes |
features |
T1251 |
5721-5723 |
, |
denotes |
, |
T1252 |
5723-5731 |
JJ |
denotes |
cellular |
T1253 |
5743-5751 |
NN |
denotes |
capacity |
T1254 |
5732-5735 |
NN |
denotes |
DNA |
T1255 |
5736-5742 |
NN |
denotes |
repair |
T1256 |
5751-5753 |
, |
denotes |
, |
T1257 |
5753-5756 |
CC |
denotes |
and |
T1258 |
5757-5759 |
NN |
denotes |
UV |
T1259 |
5760-5768 |
NN |
denotes |
survival |
T1260 |
5769-5773 |
WRB |
denotes |
when |
T1261 |
5774-5781 |
JJ |
denotes |
present |
T1262 |
5782-5784 |
IN |
denotes |
in |
T1263 |
5785-5786 |
DT |
denotes |
a |
T1264 |
5809-5814 |
NN |
denotes |
state |
T1265 |
5787-5795 |
JJ |
denotes |
compound |
T1266 |
5796-5808 |
NN |
denotes |
heterozygote |
T1267 |
5814-5815 |
. |
denotes |
. |
T1400 |
5826-5836 |
NN |
denotes |
Generation |
T1401 |
5837-5839 |
IN |
denotes |
of |
T1402 |
5840-5843 |
NN |
denotes |
Xpd |
T1403 |
5853-5866 |
NNS |
denotes |
Heterozygotes |
T1404 |
5844-5852 |
NN |
denotes |
Compound |
T1405 |
5866-6019 |
sentence |
denotes |
We generated an Xpd knock-in allele with a point mutation encoding a single amino acid change (XPDG602D) found in the XPCS patient XPCS2 (Figure 1A–1C). |
T1406 |
5867-5869 |
PRP |
denotes |
We |
T1407 |
5870-5879 |
VBD |
denotes |
generated |
T1408 |
5880-5882 |
DT |
denotes |
an |
T1409 |
5896-5902 |
NN |
denotes |
allele |
T1410 |
5883-5886 |
NN |
denotes |
Xpd |
T1411 |
5887-5892 |
VB |
denotes |
knock |
T1412 |
5892-5893 |
HYPH |
denotes |
- |
T1413 |
5893-5895 |
RP |
denotes |
in |
T1414 |
5903-5907 |
IN |
denotes |
with |
T1415 |
5908-5909 |
DT |
denotes |
a |
T1416 |
5916-5924 |
NN |
denotes |
mutation |
T1417 |
5910-5915 |
NN |
denotes |
point |
T1418 |
5925-5933 |
VBG |
denotes |
encoding |
T1419 |
5934-5935 |
DT |
denotes |
a |
T1420 |
5954-5960 |
NN |
denotes |
change |
T1421 |
5936-5942 |
JJ |
denotes |
single |
T1422 |
5943-5948 |
NN |
denotes |
amino |
T1423 |
5949-5953 |
NN |
denotes |
acid |
T1424 |
5961-5962 |
-LRB- |
denotes |
( |
T1425 |
5962-5970 |
NN |
denotes |
XPDG602D |
T1426 |
5970-5971 |
-RRB- |
denotes |
) |
T1427 |
5972-5977 |
VBN |
denotes |
found |
T1428 |
5978-5980 |
IN |
denotes |
in |
T1429 |
5981-5984 |
DT |
denotes |
the |
T1430 |
5990-5997 |
NN |
denotes |
patient |
T1431 |
5985-5989 |
NN |
denotes |
XPCS |
T1432 |
5998-6003 |
NN |
denotes |
XPCS2 |
T1433 |
6004-6005 |
-LRB- |
denotes |
( |
T1434 |
6012-6014 |
NN |
denotes |
1A |
T1435 |
6005-6011 |
NN |
denotes |
Figure |
T1436 |
6014-6015 |
SYM |
denotes |
– |
T1437 |
6015-6017 |
NN |
denotes |
1C |
T1438 |
6017-6018 |
-RRB- |
denotes |
) |
T1439 |
6018-6019 |
. |
denotes |
. |
T1440 |
6019-6311 |
sentence |
denotes |
mRNA expression from the targeted allele could be detected in embryonic stem cells by RT-PCR (Figure 1D), although expression was reduced approximately 5-fold relative to wt mRNA transcript levels as determined by Northern blotting of RNA from the testis of heterozygous animals (Figure 1E). |
T1441 |
6020-6024 |
NN |
denotes |
mRNA |
T1442 |
6025-6035 |
NN |
denotes |
expression |
T1443 |
6070-6078 |
VBN |
denotes |
detected |
T1444 |
6036-6040 |
IN |
denotes |
from |
T1445 |
6041-6044 |
DT |
denotes |
the |
T1446 |
6054-6060 |
NN |
denotes |
allele |
T1447 |
6045-6053 |
VBN |
denotes |
targeted |
T1448 |
6061-6066 |
MD |
denotes |
could |
T1449 |
6067-6069 |
VB |
denotes |
be |
T1450 |
6079-6081 |
IN |
denotes |
in |
T1451 |
6082-6091 |
JJ |
denotes |
embryonic |
T1452 |
6097-6102 |
NNS |
denotes |
cells |
T1453 |
6092-6096 |
NN |
denotes |
stem |
T1454 |
6103-6105 |
IN |
denotes |
by |
T1455 |
6106-6108 |
NN |
denotes |
RT |
T1456 |
6109-6112 |
NN |
denotes |
PCR |
T1457 |
6108-6109 |
HYPH |
denotes |
- |
T1458 |
6113-6114 |
-LRB- |
denotes |
( |
T1459 |
6121-6123 |
NN |
denotes |
1D |
T1460 |
6114-6120 |
NN |
denotes |
Figure |
T1461 |
6123-6124 |
-RRB- |
denotes |
) |
T1462 |
6124-6126 |
, |
denotes |
, |
T1463 |
6126-6134 |
IN |
denotes |
although |
T1464 |
6150-6157 |
VBN |
denotes |
reduced |
T1465 |
6135-6145 |
NN |
denotes |
expression |
T1466 |
6146-6149 |
VBD |
denotes |
was |
T1467 |
6158-6171 |
RB |
denotes |
approximately |
T1468 |
6172-6173 |
CD |
denotes |
5 |
T1469 |
6173-6174 |
HYPH |
denotes |
- |
T1470 |
6174-6178 |
RB |
denotes |
fold |
T1471 |
6179-6187 |
JJ |
denotes |
relative |
T1472 |
6188-6190 |
IN |
denotes |
to |
T1473 |
6191-6193 |
NN |
denotes |
wt |
T1474 |
6210-6216 |
NNS |
denotes |
levels |
T1475 |
6194-6198 |
NN |
denotes |
mRNA |
T1476 |
6199-6209 |
NN |
denotes |
transcript |
T1477 |
6217-6219 |
IN |
denotes |
as |
T1478 |
6220-6230 |
VBN |
denotes |
determined |
T1479 |
6231-6233 |
IN |
denotes |
by |
T1480 |
6234-6242 |
NNP |
denotes |
Northern |
T1481 |
6243-6251 |
VBG |
denotes |
blotting |
T1482 |
6252-6254 |
IN |
denotes |
of |
T1483 |
6255-6258 |
NN |
denotes |
RNA |
T1484 |
6259-6263 |
IN |
denotes |
from |
T1485 |
6264-6267 |
DT |
denotes |
the |
T1486 |
6268-6274 |
NN |
denotes |
testis |
T1487 |
6275-6277 |
IN |
denotes |
of |
T1488 |
6278-6290 |
JJ |
denotes |
heterozygous |
T1489 |
6291-6298 |
NNS |
denotes |
animals |
T1490 |
6299-6300 |
-LRB- |
denotes |
( |
T1491 |
6307-6309 |
NN |
denotes |
1E |
T1492 |
6300-6306 |
NN |
denotes |
Figure |
T1493 |
6309-6310 |
-RRB- |
denotes |
) |
T1494 |
6310-6311 |
. |
denotes |
. |
T1495 |
6311-6495 |
sentence |
denotes |
Because patient XPCS2 was a hemizygote with mutant XPD protein (XPDG602D) expressed from a single allele, the corresponding mutation was expected to be viable in the homozygous state. |
T1496 |
6312-6319 |
IN |
denotes |
Because |
T1497 |
6334-6337 |
VBD |
denotes |
was |
T1498 |
6320-6327 |
NN |
denotes |
patient |
T1499 |
6328-6333 |
NN |
denotes |
XPCS2 |
T1500 |
6449-6457 |
VBN |
denotes |
expected |
T1501 |
6338-6339 |
DT |
denotes |
a |
T1502 |
6340-6350 |
NN |
denotes |
hemizygote |
T1503 |
6351-6355 |
IN |
denotes |
with |
T1504 |
6356-6362 |
JJ |
denotes |
mutant |
T1505 |
6367-6374 |
NN |
denotes |
protein |
T1506 |
6363-6366 |
NN |
denotes |
XPD |
T1507 |
6375-6376 |
-LRB- |
denotes |
( |
T1508 |
6376-6384 |
NN |
denotes |
XPDG602D |
T1509 |
6384-6385 |
-RRB- |
denotes |
) |
T1510 |
6386-6395 |
VBN |
denotes |
expressed |
T1511 |
6396-6400 |
IN |
denotes |
from |
T1512 |
6401-6402 |
DT |
denotes |
a |
T1513 |
6410-6416 |
NN |
denotes |
allele |
T1514 |
6403-6409 |
JJ |
denotes |
single |
T1515 |
6416-6418 |
, |
denotes |
, |
T1516 |
6418-6421 |
DT |
denotes |
the |
T1517 |
6436-6444 |
NN |
denotes |
mutation |
T1518 |
6422-6435 |
VBG |
denotes |
corresponding |
T1519 |
6445-6448 |
VBD |
denotes |
was |
T1520 |
6458-6460 |
TO |
denotes |
to |
T1521 |
6461-6463 |
VB |
denotes |
be |
T1522 |
6464-6470 |
JJ |
denotes |
viable |
T1523 |
6471-6473 |
IN |
denotes |
in |
T1524 |
6474-6477 |
DT |
denotes |
the |
T1525 |
6489-6494 |
NN |
denotes |
state |
T1526 |
6478-6488 |
JJ |
denotes |
homozygous |
T1527 |
6494-6495 |
. |
denotes |
. |
T1528 |
6495-6632 |
sentence |
denotes |
However, homozygous mutant mice were not observed, neither amongst live births nor embryonic day 13.5 (E13.5) or E3.5 embryos (Table 1). |
T1529 |
6496-6503 |
RB |
denotes |
However |
T1530 |
6537-6545 |
VBN |
denotes |
observed |
T1531 |
6503-6505 |
, |
denotes |
, |
T1532 |
6505-6515 |
JJ |
denotes |
homozygous |
T1533 |
6523-6527 |
NNS |
denotes |
mice |
T1534 |
6516-6522 |
JJ |
denotes |
mutant |
T1535 |
6528-6532 |
VBD |
denotes |
were |
T1536 |
6533-6536 |
RB |
denotes |
not |
T1537 |
6545-6547 |
, |
denotes |
, |
T1538 |
6547-6554 |
CC |
denotes |
neither |
T1539 |
6555-6562 |
IN |
denotes |
amongst |
T1540 |
6563-6567 |
JJ |
denotes |
live |
T1541 |
6568-6574 |
NNS |
denotes |
births |
T1542 |
6575-6578 |
CC |
denotes |
nor |
T1543 |
6579-6588 |
JJ |
denotes |
embryonic |
T1544 |
6589-6592 |
NN |
denotes |
day |
T1545 |
6614-6621 |
NNS |
denotes |
embryos |
T1546 |
6593-6597 |
CD |
denotes |
13.5 |
T1547 |
6598-6599 |
-LRB- |
denotes |
( |
T1548 |
6599-6604 |
NN |
denotes |
E13.5 |
T1549 |
6604-6605 |
-RRB- |
denotes |
) |
T1550 |
6606-6608 |
CC |
denotes |
or |
T1551 |
6609-6613 |
NN |
denotes |
E3.5 |
T1552 |
6622-6623 |
-LRB- |
denotes |
( |
T1553 |
6623-6628 |
NN |
denotes |
Table |
T1554 |
6629-6630 |
CD |
denotes |
1 |
T1555 |
6630-6631 |
-RRB- |
denotes |
) |
T1556 |
6631-6632 |
. |
denotes |
. |
T1557 |
6632-6727 |
sentence |
denotes |
The corresponding hypomorphic, mutant allele was thus designated as homozygous lethal (†XPCS). |
T1558 |
6633-6636 |
DT |
denotes |
The |
T1559 |
6671-6677 |
NN |
denotes |
allele |
T1560 |
6637-6650 |
VBG |
denotes |
corresponding |
T1561 |
6651-6662 |
JJ |
denotes |
hypomorphic |
T1562 |
6662-6664 |
, |
denotes |
, |
T1563 |
6664-6670 |
JJ |
denotes |
mutant |
T1564 |
6687-6697 |
VBN |
denotes |
designated |
T1565 |
6678-6681 |
VBD |
denotes |
was |
T1566 |
6682-6686 |
RB |
denotes |
thus |
T1567 |
6698-6700 |
IN |
denotes |
as |
T1568 |
6701-6711 |
JJ |
denotes |
homozygous |
T1569 |
6712-6718 |
JJ |
denotes |
lethal |
T1570 |
6719-6720 |
-LRB- |
denotes |
( |
T1571 |
6720-6725 |
NN |
denotes |
†XPCS |
T1572 |
6725-6726 |
-RRB- |
denotes |
) |
T1573 |
6726-6727 |
. |
denotes |
. |
T1574 |
6727-6917 |
sentence |
denotes |
Homozygous lethality of the XPCS allele is likely due to reduced levels of expression of this essential protein as a result of gene targeting (Figure 1A) rather than to the mutation itself. |
T1575 |
6728-6738 |
JJ |
denotes |
Homozygous |
T1576 |
6739-6748 |
NN |
denotes |
lethality |
T1577 |
6768-6770 |
VBZ |
denotes |
is |
T1578 |
6749-6751 |
IN |
denotes |
of |
T1579 |
6752-6755 |
DT |
denotes |
the |
T1580 |
6761-6767 |
NN |
denotes |
allele |
T1581 |
6756-6760 |
NN |
denotes |
XPCS |
T1582 |
6771-6777 |
RB |
denotes |
likely |
T1583 |
6778-6781 |
IN |
denotes |
due |
T1584 |
6782-6784 |
IN |
denotes |
to |
T1585 |
6785-6792 |
VBN |
denotes |
reduced |
T1586 |
6793-6799 |
NNS |
denotes |
levels |
T1587 |
6800-6802 |
IN |
denotes |
of |
T1588 |
6803-6813 |
NN |
denotes |
expression |
T1589 |
6814-6816 |
IN |
denotes |
of |
T1590 |
6817-6821 |
DT |
denotes |
this |
T1591 |
6832-6839 |
NN |
denotes |
protein |
T1592 |
6822-6831 |
JJ |
denotes |
essential |
T1593 |
6840-6842 |
IN |
denotes |
as |
T1594 |
6843-6844 |
DT |
denotes |
a |
T1595 |
6845-6851 |
NN |
denotes |
result |
T1596 |
6852-6854 |
IN |
denotes |
of |
T1597 |
6855-6859 |
NN |
denotes |
gene |
T1598 |
6860-6869 |
NN |
denotes |
targeting |
T1599 |
6870-6871 |
-LRB- |
denotes |
( |
T1600 |
6878-6880 |
NN |
denotes |
1A |
T1601 |
6871-6877 |
NN |
denotes |
Figure |
T1602 |
6880-6881 |
-RRB- |
denotes |
) |
T1603 |
6882-6888 |
JJ |
denotes |
rather |
T1604 |
6889-6893 |
IN |
denotes |
than |
T1605 |
6894-6896 |
IN |
denotes |
to |
T1606 |
6897-6900 |
DT |
denotes |
the |
T1607 |
6901-6909 |
NN |
denotes |
mutation |
T1608 |
6910-6916 |
PRP |
denotes |
itself |
T1609 |
6916-6917 |
. |
denotes |
. |
T1610 |
6917-7029 |
sentence |
denotes |
Xpd ablation (XpdKO /KO ) is similarly incompatible with life beyond the earliest stages of embryogenesis [22]. |
T1611 |
6918-6921 |
NN |
denotes |
Xpd |
T1612 |
6922-6930 |
NN |
denotes |
ablation |
T1613 |
6944-6946 |
VBZ |
denotes |
is |
T1614 |
6931-6932 |
-LRB- |
denotes |
( |
T1615 |
6939-6941 |
NN |
denotes |
KO |
T1616 |
6932-6937 |
NN |
denotes |
XpdKO |
T1617 |
6938-6939 |
HYPH |
denotes |
/ |
T1618 |
6942-6943 |
-RRB- |
denotes |
) |
T1619 |
6947-6956 |
RB |
denotes |
similarly |
T1620 |
6957-6969 |
JJ |
denotes |
incompatible |
T1621 |
6970-6974 |
IN |
denotes |
with |
T1622 |
6975-6979 |
NN |
denotes |
life |
T1623 |
6980-6986 |
IN |
denotes |
beyond |
T1624 |
6987-6990 |
DT |
denotes |
the |
T1625 |
7000-7006 |
NNS |
denotes |
stages |
T1626 |
6991-6999 |
JJS |
denotes |
earliest |
T1627 |
7007-7009 |
IN |
denotes |
of |
T1628 |
7010-7023 |
NN |
denotes |
embryogenesis |
T1629 |
7024-7025 |
-LRB- |
denotes |
[ |
T1630 |
7025-7027 |
CD |
denotes |
22 |
T1631 |
7027-7028 |
-RRB- |
denotes |
] |
T1632 |
7028-7029 |
. |
denotes |
. |
T1633 |
7029-7316 |
sentence |
denotes |
Consistent with this interpretation, a different targeted Xpd mutation encoding XPDR683W, which is associated with XP in the homozygous state in humans, was similarly underexpressed and lethal in the homozygous state (designated as †XP allele) (Figure 1A–1C; Table 1; unpublished data). |
T1634 |
7030-7040 |
JJ |
denotes |
Consistent |
T1635 |
7183-7186 |
VBD |
denotes |
was |
T1636 |
7041-7045 |
IN |
denotes |
with |
T1637 |
7046-7050 |
DT |
denotes |
this |
T1638 |
7051-7065 |
NN |
denotes |
interpretation |
T1639 |
7065-7067 |
, |
denotes |
, |
T1640 |
7067-7068 |
DT |
denotes |
a |
T1641 |
7092-7100 |
NN |
denotes |
mutation |
T1642 |
7069-7078 |
JJ |
denotes |
different |
T1643 |
7079-7087 |
VBN |
denotes |
targeted |
T1644 |
7088-7091 |
NN |
denotes |
Xpd |
T1645 |
7101-7109 |
VBG |
denotes |
encoding |
T1646 |
7110-7118 |
NN |
denotes |
XPDR683W |
T1647 |
7118-7120 |
, |
denotes |
, |
T1648 |
7120-7125 |
WDT |
denotes |
which |
T1649 |
7129-7139 |
VBN |
denotes |
associated |
T1650 |
7126-7128 |
VBZ |
denotes |
is |
T1651 |
7140-7144 |
IN |
denotes |
with |
T1652 |
7145-7147 |
NN |
denotes |
XP |
T1653 |
7148-7150 |
IN |
denotes |
in |
T1654 |
7151-7154 |
DT |
denotes |
the |
T1655 |
7166-7171 |
NN |
denotes |
state |
T1656 |
7155-7165 |
JJ |
denotes |
homozygous |
T1657 |
7172-7174 |
IN |
denotes |
in |
T1658 |
7175-7181 |
NNS |
denotes |
humans |
T1659 |
7181-7183 |
, |
denotes |
, |
T1660 |
7187-7196 |
RB |
denotes |
similarly |
T1661 |
7197-7211 |
JJ |
denotes |
underexpressed |
T1662 |
7212-7215 |
CC |
denotes |
and |
T1663 |
7216-7222 |
JJ |
denotes |
lethal |
T1664 |
7223-7225 |
IN |
denotes |
in |
T1665 |
7226-7229 |
DT |
denotes |
the |
T1666 |
7241-7246 |
NN |
denotes |
state |
T1667 |
7230-7240 |
JJ |
denotes |
homozygous |
T1668 |
7247-7248 |
-LRB- |
denotes |
( |
T1669 |
7248-7258 |
VBN |
denotes |
designated |
T1670 |
7259-7261 |
IN |
denotes |
as |
T1671 |
7262-7265 |
NN |
denotes |
†XP |
T1672 |
7266-7272 |
NN |
denotes |
allele |
T1673 |
7272-7273 |
-RRB- |
denotes |
) |
T1674 |
7274-7275 |
-LRB- |
denotes |
( |
T1675 |
7282-7284 |
NN |
denotes |
1A |
T1676 |
7275-7281 |
NN |
denotes |
Figure |
T1677 |
7284-7285 |
SYM |
denotes |
– |
T1678 |
7285-7287 |
NN |
denotes |
1C |
T1679 |
7287-7288 |
: |
denotes |
; |
T1680 |
7289-7294 |
NN |
denotes |
Table |
T1681 |
7295-7296 |
CD |
denotes |
1 |
T1682 |
7296-7297 |
: |
denotes |
; |
T1683 |
7298-7309 |
JJ |
denotes |
unpublished |
T1684 |
7310-7314 |
NNS |
denotes |
data |
T1685 |
7314-7315 |
-RRB- |
denotes |
) |
T1686 |
7315-7316 |
. |
denotes |
. |
T1687 |
7316-7535 |
sentence |
denotes |
Also, a different targeting approach leading to the use of the native 3′UTR and removal of the neo gene resulted in normalisation of XpdXPCS mRNA levels and viable homozygous XpdXPCS/XPCS (XPDG602D/G602D) animals [23]. |
T1688 |
7317-7321 |
RB |
denotes |
Also |
T1689 |
7421-7429 |
VBD |
denotes |
resulted |
T1690 |
7321-7323 |
, |
denotes |
, |
T1691 |
7323-7324 |
DT |
denotes |
a |
T1692 |
7345-7353 |
NN |
denotes |
approach |
T1693 |
7325-7334 |
JJ |
denotes |
different |
T1694 |
7335-7344 |
NN |
denotes |
targeting |
T1695 |
7354-7361 |
VBG |
denotes |
leading |
T1696 |
7362-7364 |
IN |
denotes |
to |
T1697 |
7365-7368 |
DT |
denotes |
the |
T1698 |
7369-7372 |
NN |
denotes |
use |
T1699 |
7373-7375 |
IN |
denotes |
of |
T1700 |
7376-7379 |
DT |
denotes |
the |
T1701 |
7389-7392 |
NN |
denotes |
UTR |
T1702 |
7380-7386 |
JJ |
denotes |
native |
T1703 |
7387-7388 |
CD |
denotes |
3 |
T1704 |
7388-7389 |
SYM |
denotes |
′ |
T1705 |
7393-7396 |
CC |
denotes |
and |
T1706 |
7397-7404 |
NN |
denotes |
removal |
T1707 |
7405-7407 |
IN |
denotes |
of |
T1708 |
7408-7411 |
DT |
denotes |
the |
T1709 |
7416-7420 |
NN |
denotes |
gene |
T1710 |
7412-7415 |
NN |
denotes |
neo |
T1711 |
7430-7432 |
IN |
denotes |
in |
T1712 |
7433-7446 |
NN |
denotes |
normalisation |
T1713 |
7447-7449 |
IN |
denotes |
of |
T1714 |
7450-7457 |
NN |
denotes |
XpdXPCS |
T1715 |
7463-7469 |
NNS |
denotes |
levels |
T1716 |
7458-7462 |
NN |
denotes |
mRNA |
T1717 |
7470-7473 |
CC |
denotes |
and |
T1718 |
7474-7480 |
JJ |
denotes |
viable |
T1719 |
7522-7529 |
NNS |
denotes |
animals |
T1720 |
7481-7491 |
JJ |
denotes |
homozygous |
T1721 |
7492-7499 |
NN |
denotes |
XpdXPCS |
T1722 |
7500-7504 |
NN |
denotes |
XPCS |
T1723 |
7499-7500 |
HYPH |
denotes |
/ |
T1724 |
7505-7506 |
-LRB- |
denotes |
( |
T1725 |
7515-7520 |
NN |
denotes |
G602D |
T1726 |
7506-7514 |
NN |
denotes |
XPDG602D |
T1727 |
7514-7515 |
HYPH |
denotes |
/ |
T1728 |
7520-7521 |
-RRB- |
denotes |
) |
T1729 |
7530-7531 |
-LRB- |
denotes |
[ |
T1730 |
7531-7533 |
CD |
denotes |
23 |
T1731 |
7533-7534 |
-RRB- |
denotes |
] |
T1732 |
7534-7535 |
. |
denotes |
. |
T1954 |
9845-9846 |
`` |
denotes |
“ |
T1955 |
9852-9858 |
NN |
denotes |
Allele |
T1956 |
9846-9850 |
JJ |
denotes |
Null |
T1957 |
9850-9851 |
'' |
denotes |
” |
T1958 |
9863-9872 |
VB |
denotes |
Alleviate |
T1959 |
9859-9862 |
MD |
denotes |
Can |
T1960 |
9873-9886 |
JJ |
denotes |
Developmental |
T1961 |
9887-9892 |
NN |
denotes |
Delay |
T1962 |
9892-9894 |
, |
denotes |
, |
T1963 |
9894-9898 |
NN |
denotes |
Skin |
T1964 |
9909-9917 |
NNS |
denotes |
Features |
T1965 |
9898-9900 |
, |
denotes |
, |
T1966 |
9900-9903 |
CC |
denotes |
and |
T1967 |
9904-9908 |
NN |
denotes |
Hair |
T1968 |
9918-9920 |
IN |
denotes |
of |
T1969 |
9921-9924 |
NN |
denotes |
TTD |
T1970 |
9924-10146 |
sentence |
denotes |
To test the potential of a homozygous lethal “null” allele to nevertheless contribute to organismal phenotype, we combined an Xpd†XPCS allele with a viable XpdTTD allele by crossing the corresponding heterozygous animals. |
T1971 |
9925-9927 |
TO |
denotes |
To |
T1972 |
9928-9932 |
VB |
denotes |
test |
T1973 |
10039-10047 |
VBD |
denotes |
combined |
T1974 |
9933-9936 |
DT |
denotes |
the |
T1975 |
9937-9946 |
NN |
denotes |
potential |
T1976 |
9947-9949 |
IN |
denotes |
of |
T1977 |
9950-9951 |
DT |
denotes |
a |
T1978 |
9977-9983 |
NN |
denotes |
allele |
T1979 |
9952-9962 |
JJ |
denotes |
homozygous |
T1980 |
9963-9969 |
JJ |
denotes |
lethal |
T1981 |
9970-9971 |
`` |
denotes |
“ |
T1982 |
9971-9975 |
JJ |
denotes |
null |
T1983 |
9975-9976 |
'' |
denotes |
” |
T1984 |
9984-9986 |
TO |
denotes |
to |
T1985 |
10000-10010 |
VB |
denotes |
contribute |
T1986 |
9987-9999 |
RB |
denotes |
nevertheless |
T1987 |
10011-10013 |
IN |
denotes |
to |
T1988 |
10014-10024 |
JJ |
denotes |
organismal |
T1989 |
10025-10034 |
NN |
denotes |
phenotype |
T1990 |
10034-10036 |
, |
denotes |
, |
T1991 |
10036-10038 |
PRP |
denotes |
we |
T1992 |
10048-10050 |
DT |
denotes |
an |
T1993 |
10060-10066 |
NN |
denotes |
allele |
T1994 |
10051-10059 |
NN |
denotes |
Xpd†XPCS |
T1995 |
10067-10071 |
IN |
denotes |
with |
T1996 |
10072-10073 |
DT |
denotes |
a |
T1997 |
10088-10094 |
NN |
denotes |
allele |
T1998 |
10074-10080 |
JJ |
denotes |
viable |
T1999 |
10081-10087 |
NN |
denotes |
XpdTTD |
T2000 |
10095-10097 |
IN |
denotes |
by |
T2001 |
10098-10106 |
VBG |
denotes |
crossing |
T2002 |
10107-10110 |
DT |
denotes |
the |
T2003 |
10138-10145 |
NNS |
denotes |
animals |
T2004 |
10111-10124 |
VBG |
denotes |
corresponding |
T2005 |
10125-10137 |
JJ |
denotes |
heterozygous |
T2006 |
10145-10146 |
. |
denotes |
. |
T2007 |
10146-10317 |
sentence |
denotes |
Similar to hemizygous TTD mice carrying one true Xpd knockout allele (XpdTTD/KO), compound heterozygous XpdTTD/†XPCS mice were born at the expected Mendelian frequencies. |
T2008 |
10147-10154 |
JJ |
denotes |
Similar |
T2009 |
10274-10278 |
VBN |
denotes |
born |
T2010 |
10155-10157 |
IN |
denotes |
to |
T2011 |
10158-10168 |
JJ |
denotes |
hemizygous |
T2012 |
10173-10177 |
NNS |
denotes |
mice |
T2013 |
10169-10172 |
NN |
denotes |
TTD |
T2014 |
10178-10186 |
VBG |
denotes |
carrying |
T2015 |
10187-10190 |
CD |
denotes |
one |
T2016 |
10209-10215 |
NN |
denotes |
allele |
T2017 |
10191-10195 |
JJ |
denotes |
true |
T2018 |
10196-10199 |
NN |
denotes |
Xpd |
T2019 |
10200-10208 |
NN |
denotes |
knockout |
T2020 |
10216-10217 |
-LRB- |
denotes |
( |
T2021 |
10224-10226 |
NN |
denotes |
KO |
T2022 |
10217-10223 |
NN |
denotes |
XpdTTD |
T2023 |
10223-10224 |
HYPH |
denotes |
/ |
T2024 |
10226-10227 |
-RRB- |
denotes |
) |
T2025 |
10227-10229 |
, |
denotes |
, |
T2026 |
10229-10237 |
NN |
denotes |
compound |
T2027 |
10264-10268 |
NNS |
denotes |
mice |
T2028 |
10238-10250 |
JJ |
denotes |
heterozygous |
T2029 |
10251-10257 |
NN |
denotes |
XpdTTD |
T2030 |
10258-10263 |
NN |
denotes |
†XPCS |
T2031 |
10257-10258 |
HYPH |
denotes |
/ |
T2032 |
10269-10273 |
VBD |
denotes |
were |
T2033 |
10279-10281 |
IN |
denotes |
at |
T2034 |
10282-10285 |
DT |
denotes |
the |
T2035 |
10305-10316 |
NNS |
denotes |
frequencies |
T2036 |
10286-10294 |
VBN |
denotes |
expected |
T2037 |
10295-10304 |
JJ |
denotes |
Mendelian |
T2038 |
10316-10317 |
. |
denotes |
. |
T2039 |
10317-10513 |
sentence |
denotes |
Expression from the Xpd†XPCS allele was also reduced in the testis of compound heterozygous animals, whereas expression from the XpdTTD allele was increased relative to wt by ~5-fold (Figure 1E). |
T2040 |
10318-10328 |
NN |
denotes |
Expression |
T2041 |
10363-10370 |
VBN |
denotes |
reduced |
T2042 |
10329-10333 |
IN |
denotes |
from |
T2043 |
10334-10337 |
DT |
denotes |
the |
T2044 |
10347-10353 |
NN |
denotes |
allele |
T2045 |
10338-10346 |
NN |
denotes |
Xpd†XPCS |
T2046 |
10354-10357 |
VBD |
denotes |
was |
T2047 |
10358-10362 |
RB |
denotes |
also |
T2048 |
10371-10373 |
IN |
denotes |
in |
T2049 |
10374-10377 |
DT |
denotes |
the |
T2050 |
10378-10384 |
NN |
denotes |
testis |
T2051 |
10385-10387 |
IN |
denotes |
of |
T2052 |
10388-10396 |
NN |
denotes |
compound |
T2053 |
10410-10417 |
NNS |
denotes |
animals |
T2054 |
10397-10409 |
JJ |
denotes |
heterozygous |
T2055 |
10417-10419 |
, |
denotes |
, |
T2056 |
10419-10426 |
IN |
denotes |
whereas |
T2057 |
10465-10474 |
VBN |
denotes |
increased |
T2058 |
10427-10437 |
NN |
denotes |
expression |
T2059 |
10438-10442 |
IN |
denotes |
from |
T2060 |
10443-10446 |
DT |
denotes |
the |
T2061 |
10454-10460 |
NN |
denotes |
allele |
T2062 |
10447-10453 |
NN |
denotes |
XpdTTD |
T2063 |
10461-10464 |
VBD |
denotes |
was |
T2064 |
10475-10483 |
JJ |
denotes |
relative |
T2065 |
10484-10486 |
IN |
denotes |
to |
T2066 |
10487-10489 |
NN |
denotes |
wt |
T2067 |
10490-10492 |
IN |
denotes |
by |
T2068 |
10493-10494 |
SYM |
denotes |
~ |
T2069 |
10494-10500 |
RB |
denotes |
5-fold |
T2070 |
10501-10502 |
-LRB- |
denotes |
( |
T2071 |
10509-10511 |
NN |
denotes |
1E |
T2072 |
10502-10508 |
NN |
denotes |
Figure |
T2073 |
10511-10512 |
-RRB- |
denotes |
) |
T2074 |
10512-10513 |
. |
denotes |
. |
T2075 |
10513-10766 |
sentence |
denotes |
Because of a lack of available antibodies and the inability to distinguish amongst various mutant forms of XPD differing only by single amino acid substitutions, we were unable to ascertain the relative amount of XPD protein from the different alleles. |
T2076 |
10514-10521 |
IN |
denotes |
Because |
T2077 |
10679-10683 |
VBD |
denotes |
were |
T2078 |
10522-10524 |
IN |
denotes |
of |
T2079 |
10525-10526 |
DT |
denotes |
a |
T2080 |
10527-10531 |
NN |
denotes |
lack |
T2081 |
10532-10534 |
IN |
denotes |
of |
T2082 |
10535-10544 |
JJ |
denotes |
available |
T2083 |
10545-10555 |
NNS |
denotes |
antibodies |
T2084 |
10556-10559 |
CC |
denotes |
and |
T2085 |
10560-10563 |
DT |
denotes |
the |
T2086 |
10564-10573 |
NN |
denotes |
inability |
T2087 |
10574-10576 |
TO |
denotes |
to |
T2088 |
10577-10588 |
VB |
denotes |
distinguish |
T2089 |
10589-10596 |
IN |
denotes |
amongst |
T2090 |
10597-10604 |
JJ |
denotes |
various |
T2091 |
10612-10617 |
NNS |
denotes |
forms |
T2092 |
10605-10611 |
JJ |
denotes |
mutant |
T2093 |
10618-10620 |
IN |
denotes |
of |
T2094 |
10621-10624 |
NN |
denotes |
XPD |
T2095 |
10625-10634 |
VBG |
denotes |
differing |
T2096 |
10635-10639 |
RB |
denotes |
only |
T2097 |
10640-10642 |
IN |
denotes |
by |
T2098 |
10643-10649 |
JJ |
denotes |
single |
T2099 |
10661-10674 |
NNS |
denotes |
substitutions |
T2100 |
10650-10655 |
NN |
denotes |
amino |
T2101 |
10656-10660 |
NN |
denotes |
acid |
T2102 |
10674-10676 |
, |
denotes |
, |
T2103 |
10676-10678 |
PRP |
denotes |
we |
T2104 |
10684-10690 |
JJ |
denotes |
unable |
T2105 |
10691-10693 |
TO |
denotes |
to |
T2106 |
10694-10703 |
VB |
denotes |
ascertain |
T2107 |
10704-10707 |
DT |
denotes |
the |
T2108 |
10717-10723 |
NN |
denotes |
amount |
T2109 |
10708-10716 |
JJ |
denotes |
relative |
T2110 |
10724-10726 |
IN |
denotes |
of |
T2111 |
10727-10730 |
NN |
denotes |
XPD |
T2112 |
10731-10738 |
NN |
denotes |
protein |
T2113 |
10739-10743 |
IN |
denotes |
from |
T2114 |
10744-10747 |
DT |
denotes |
the |
T2115 |
10758-10765 |
NNS |
denotes |
alleles |
T2116 |
10748-10757 |
JJ |
denotes |
different |
T2117 |
10765-10766 |
. |
denotes |
. |
T2118 |
10766-11073 |
sentence |
denotes |
Despite reduced levels of mRNA expression, the homozygous lethal Xpd†XPCS allele ameliorated multiple XpdTTD-associated disease symptoms in compound heterozygous XpdTTD/†XPCS animals including the hallmark brittle hair and cutaneous features fully penetrant in homo- and hemizygous TTD mice (Figure 2A–2C). |
T2119 |
10767-10774 |
IN |
denotes |
Despite |
T2120 |
10848-10859 |
VBD |
denotes |
ameliorated |
T2121 |
10775-10782 |
VBN |
denotes |
reduced |
T2122 |
10783-10789 |
NNS |
denotes |
levels |
T2123 |
10790-10792 |
IN |
denotes |
of |
T2124 |
10793-10797 |
NN |
denotes |
mRNA |
T2125 |
10798-10808 |
NN |
denotes |
expression |
T2126 |
10808-10810 |
, |
denotes |
, |
T2127 |
10810-10813 |
DT |
denotes |
the |
T2128 |
10841-10847 |
NN |
denotes |
allele |
T2129 |
10814-10824 |
JJ |
denotes |
homozygous |
T2130 |
10825-10831 |
JJ |
denotes |
lethal |
T2131 |
10832-10840 |
NN |
denotes |
Xpd†XPCS |
T2132 |
10860-10868 |
JJ |
denotes |
multiple |
T2133 |
10895-10903 |
NNS |
denotes |
symptoms |
T2134 |
10869-10875 |
NN |
denotes |
XpdTTD |
T2135 |
10876-10886 |
JJ |
denotes |
associated |
T2136 |
10875-10876 |
HYPH |
denotes |
- |
T2137 |
10887-10894 |
NN |
denotes |
disease |
T2138 |
10904-10906 |
IN |
denotes |
in |
T2139 |
10907-10915 |
JJ |
denotes |
compound |
T2140 |
10942-10949 |
NNS |
denotes |
animals |
T2141 |
10916-10928 |
JJ |
denotes |
heterozygous |
T2142 |
10929-10935 |
NN |
denotes |
XpdTTD |
T2143 |
10936-10941 |
NN |
denotes |
†XPCS |
T2144 |
10935-10936 |
HYPH |
denotes |
/ |
T2145 |
10950-10959 |
VBG |
denotes |
including |
T2146 |
10960-10963 |
DT |
denotes |
the |
T2147 |
10981-10985 |
NN |
denotes |
hair |
T2148 |
10964-10972 |
NN |
denotes |
hallmark |
T2149 |
10973-10980 |
JJ |
denotes |
brittle |
T2150 |
10986-10989 |
CC |
denotes |
and |
T2151 |
10990-10999 |
JJ |
denotes |
cutaneous |
T2152 |
11000-11008 |
NNS |
denotes |
features |
T2153 |
11009-11014 |
RB |
denotes |
fully |
T2154 |
11015-11024 |
JJ |
denotes |
penetrant |
T2155 |
11025-11027 |
IN |
denotes |
in |
T2156 |
11028-11032 |
AFX |
denotes |
homo |
T2157 |
11038-11048 |
JJ |
denotes |
hemizygous |
T2158 |
11032-11033 |
HYPH |
denotes |
- |
T2159 |
11034-11037 |
CC |
denotes |
and |
T2160 |
11053-11057 |
NNS |
denotes |
mice |
T2161 |
11049-11052 |
NN |
denotes |
TTD |
T2162 |
11058-11059 |
-LRB- |
denotes |
( |
T2163 |
11066-11068 |
NN |
denotes |
2A |
T2164 |
11059-11065 |
NN |
denotes |
Figure |
T2165 |
11068-11069 |
SYM |
denotes |
– |
T2166 |
11069-11071 |
NN |
denotes |
2C |
T2167 |
11071-11072 |
-RRB- |
denotes |
) |
T2168 |
11072-11073 |
. |
denotes |
. |
T2169 |
11073-11397 |
sentence |
denotes |
In marked contrast to XpdTTD/TTD (and XpdTTD/KO) mice, which display complete hair loss in the first hair cycle and partial hair loss in subsequent cycles throughout their lives [21], compound heterozygous XpdTTD/†XPCS mice displayed some hair loss only during the first hair cycle and only locally at the back (Figure 2A). |
T2170 |
11074-11076 |
IN |
denotes |
In |
T2171 |
11298-11307 |
VBD |
denotes |
displayed |
T2172 |
11077-11083 |
JJ |
denotes |
marked |
T2173 |
11084-11092 |
NN |
denotes |
contrast |
T2174 |
11093-11095 |
IN |
denotes |
to |
T2175 |
11096-11102 |
NN |
denotes |
XpdTTD |
T2176 |
11103-11106 |
NN |
denotes |
TTD |
T2177 |
11102-11103 |
HYPH |
denotes |
/ |
T2178 |
11123-11127 |
NNS |
denotes |
mice |
T2179 |
11107-11108 |
-LRB- |
denotes |
( |
T2180 |
11108-11111 |
CC |
denotes |
and |
T2181 |
11112-11118 |
NN |
denotes |
XpdTTD |
T2182 |
11119-11121 |
NN |
denotes |
KO |
T2183 |
11118-11119 |
HYPH |
denotes |
/ |
T2184 |
11121-11122 |
-RRB- |
denotes |
) |
T2185 |
11127-11129 |
, |
denotes |
, |
T2186 |
11129-11134 |
WDT |
denotes |
which |
T2187 |
11135-11142 |
VBP |
denotes |
display |
T2188 |
11143-11151 |
JJ |
denotes |
complete |
T2189 |
11157-11161 |
NN |
denotes |
loss |
T2190 |
11152-11156 |
NN |
denotes |
hair |
T2191 |
11162-11164 |
IN |
denotes |
in |
T2192 |
11165-11168 |
DT |
denotes |
the |
T2193 |
11180-11185 |
NN |
denotes |
cycle |
T2194 |
11169-11174 |
JJ |
denotes |
first |
T2195 |
11175-11179 |
NN |
denotes |
hair |
T2196 |
11186-11189 |
CC |
denotes |
and |
T2197 |
11190-11197 |
JJ |
denotes |
partial |
T2198 |
11203-11207 |
NN |
denotes |
loss |
T2199 |
11198-11202 |
NN |
denotes |
hair |
T2200 |
11208-11210 |
IN |
denotes |
in |
T2201 |
11211-11221 |
JJ |
denotes |
subsequent |
T2202 |
11222-11228 |
NNS |
denotes |
cycles |
T2203 |
11229-11239 |
IN |
denotes |
throughout |
T2204 |
11240-11245 |
PRP$ |
denotes |
their |
T2205 |
11246-11251 |
NNS |
denotes |
lives |
T2206 |
11252-11253 |
-LRB- |
denotes |
[ |
T2207 |
11253-11255 |
CD |
denotes |
21 |
T2208 |
11255-11256 |
-RRB- |
denotes |
] |
T2209 |
11256-11258 |
, |
denotes |
, |
T2210 |
11258-11266 |
NN |
denotes |
compound |
T2211 |
11293-11297 |
NNS |
denotes |
mice |
T2212 |
11267-11279 |
JJ |
denotes |
heterozygous |
T2213 |
11280-11292 |
NN |
denotes |
XpdTTD/†XPCS |
T2214 |
11308-11312 |
DT |
denotes |
some |
T2215 |
11318-11322 |
NN |
denotes |
loss |
T2216 |
11313-11317 |
NN |
denotes |
hair |
T2217 |
11323-11327 |
RB |
denotes |
only |
T2218 |
11328-11334 |
IN |
denotes |
during |
T2219 |
11335-11338 |
DT |
denotes |
the |
T2220 |
11350-11355 |
NN |
denotes |
cycle |
T2221 |
11339-11344 |
JJ |
denotes |
first |
T2222 |
11345-11349 |
NN |
denotes |
hair |
T2223 |
11356-11359 |
CC |
denotes |
and |
T2224 |
11360-11364 |
RB |
denotes |
only |
T2225 |
11365-11372 |
RB |
denotes |
locally |
T2226 |
11373-11375 |
IN |
denotes |
at |
T2227 |
11376-11379 |
DT |
denotes |
the |
T2228 |
11380-11384 |
NN |
denotes |
back |
T2229 |
11385-11386 |
-LRB- |
denotes |
( |
T2230 |
11393-11395 |
NN |
denotes |
2A |
T2231 |
11386-11392 |
NN |
denotes |
Figure |
T2232 |
11395-11396 |
-RRB- |
denotes |
) |
T2233 |
11396-11397 |
. |
denotes |
. |
T2234 |
11397-11591 |
sentence |
denotes |
Scanning electron microscope analysis of XpdTTD/†XPCS hair revealed an almost normal appearance, with TTD-like features such as broken hairs found only at very low frequency (unpublished data). |
T2235 |
11398-11406 |
NN |
denotes |
Scanning |
T2236 |
11416-11426 |
NN |
denotes |
microscope |
T2237 |
11407-11415 |
NN |
denotes |
electron |
T2238 |
11427-11435 |
NN |
denotes |
analysis |
T2239 |
11457-11465 |
VBD |
denotes |
revealed |
T2240 |
11436-11438 |
IN |
denotes |
of |
T2241 |
11439-11445 |
NN |
denotes |
XpdTTD |
T2242 |
11446-11451 |
NN |
denotes |
†XPCS |
T2243 |
11445-11446 |
HYPH |
denotes |
/ |
T2244 |
11452-11456 |
NN |
denotes |
hair |
T2245 |
11466-11468 |
DT |
denotes |
an |
T2246 |
11483-11493 |
NN |
denotes |
appearance |
T2247 |
11469-11475 |
RB |
denotes |
almost |
T2248 |
11476-11482 |
JJ |
denotes |
normal |
T2249 |
11493-11495 |
, |
denotes |
, |
T2250 |
11495-11499 |
IN |
denotes |
with |
T2251 |
11500-11503 |
NN |
denotes |
TTD |
T2252 |
11504-11508 |
JJ |
denotes |
like |
T2253 |
11503-11504 |
HYPH |
denotes |
- |
T2254 |
11509-11517 |
NNS |
denotes |
features |
T2255 |
11518-11522 |
JJ |
denotes |
such |
T2256 |
11523-11525 |
IN |
denotes |
as |
T2257 |
11526-11532 |
JJ |
denotes |
broken |
T2258 |
11533-11538 |
NNS |
denotes |
hairs |
T2259 |
11539-11544 |
VBN |
denotes |
found |
T2260 |
11545-11549 |
RB |
denotes |
only |
T2261 |
11550-11552 |
IN |
denotes |
at |
T2262 |
11553-11557 |
RB |
denotes |
very |
T2263 |
11558-11561 |
JJ |
denotes |
low |
T2264 |
11562-11571 |
NN |
denotes |
frequency |
T2265 |
11572-11573 |
-LRB- |
denotes |
( |
T2266 |
11585-11589 |
NNS |
denotes |
data |
T2267 |
11573-11584 |
JJ |
denotes |
unpublished |
T2268 |
11589-11590 |
-RRB- |
denotes |
) |
T2269 |
11590-11591 |
. |
denotes |
. |
T2270 |
11591-11778 |
sentence |
denotes |
Amino acid analysis confirmed that cysteine levels in the hair of the XpdTTD/†XPCS mice were significantly higher than in XpdTTD/TTD animals, but remained below the wt level (Figure 2C). |
T2271 |
11592-11597 |
NN |
denotes |
Amino |
T2272 |
11598-11602 |
NN |
denotes |
acid |
T2273 |
11603-11611 |
NN |
denotes |
analysis |
T2274 |
11612-11621 |
VBD |
denotes |
confirmed |
T2275 |
11622-11626 |
IN |
denotes |
that |
T2276 |
11680-11684 |
VBD |
denotes |
were |
T2277 |
11627-11635 |
NN |
denotes |
cysteine |
T2278 |
11636-11642 |
NNS |
denotes |
levels |
T2279 |
11643-11645 |
IN |
denotes |
in |
T2280 |
11646-11649 |
DT |
denotes |
the |
T2281 |
11650-11654 |
NN |
denotes |
hair |
T2282 |
11655-11657 |
IN |
denotes |
of |
T2283 |
11658-11661 |
DT |
denotes |
the |
T2284 |
11675-11679 |
NNS |
denotes |
mice |
T2285 |
11662-11668 |
NN |
denotes |
XpdTTD |
T2286 |
11669-11674 |
NN |
denotes |
†XPCS |
T2287 |
11668-11669 |
HYPH |
denotes |
/ |
T2288 |
11685-11698 |
RB |
denotes |
significantly |
T2289 |
11699-11705 |
JJR |
denotes |
higher |
T2352 |
13263-13266 |
DT |
denotes |
the |
T2353 |
13267-13272 |
NN |
denotes |
layer |
T2354 |
13273-13275 |
IN |
denotes |
of |
T2355 |
13276-13279 |
DT |
denotes |
the |
T2356 |
13290-13295 |
NNS |
denotes |
cells |
T2357 |
13280-13289 |
JJ |
denotes |
nucleated |
T2358 |
13295-13296 |
-RRB- |
denotes |
) |
T2359 |
13296-13298 |
, |
denotes |
, |
T2360 |
13298-13312 |
NN |
denotes |
hyperkeratosis |
T2361 |
13313-13314 |
-LRB- |
denotes |
( |
T2362 |
13324-13334 |
NN |
denotes |
thickening |
T2363 |
13314-13323 |
JJ |
denotes |
prominent |
T2364 |
13335-13337 |
IN |
denotes |
of |
T2365 |
13338-13341 |
DT |
denotes |
the |
T2366 |
13352-13357 |
NN |
denotes |
layer |
T2367 |
13342-13351 |
VBN |
denotes |
cornified |
T2368 |
13357-13358 |
-RRB- |
denotes |
) |
T2369 |
13358-13360 |
, |
denotes |
, |
T2370 |
13360-13363 |
CC |
denotes |
and |
T2371 |
13364-13374 |
JJ |
denotes |
pronounced |
T2372 |
13384-13389 |
NN |
denotes |
layer |
T2373 |
13375-13383 |
JJ |
denotes |
granular |
T2374 |
13390-13393 |
CC |
denotes |
and |
T2375 |
13394-13403 |
JJ |
denotes |
sebacious |
T2376 |
13404-13409 |
NN |
denotes |
gland |
T2377 |
13410-13421 |
NN |
denotes |
hyperplasia |
T2378 |
13422-13423 |
-LRB- |
denotes |
( |
T2379 |
13423-13430 |
VBG |
denotes |
causing |
T2380 |
13431-13437 |
JJ |
denotes |
greasy |
T2381 |
13438-13448 |
NN |
denotes |
appearance |
T2382 |
13449-13451 |
IN |
denotes |
of |
T2383 |
13452-13455 |
DT |
denotes |
the |
T2384 |
13456-13460 |
NN |
denotes |
hair |
T2385 |
13460-13461 |
-RRB- |
denotes |
) |
T2386 |
13461-13463 |
, |
denotes |
, |
T2387 |
13468-13474 |
JJ |
denotes |
absent |
T2388 |
13475-13477 |
IN |
denotes |
in |
T2389 |
13478-13481 |
DT |
denotes |
the |
T2390 |
13482-13486 |
NN |
denotes |
skin |
T2391 |
13487-13489 |
IN |
denotes |
of |
T2392 |
13490-13496 |
NN |
denotes |
XpdTTD |
T2393 |
13497-13502 |
NN |
denotes |
†XPCS |
T2394 |
13496-13497 |
HYPH |
denotes |
/ |
T2395 |
13503-13507 |
NNS |
denotes |
mice |
T2396 |
13507-13509 |
, |
denotes |
, |
T2397 |
13509-13511 |
IN |
denotes |
as |
T2398 |
13512-13523 |
VBN |
denotes |
established |
T2399 |
13524-13526 |
IN |
denotes |
by |
T2400 |
13527-13532 |
JJ |
denotes |
blind |
T2401 |
13545-13556 |
NN |
denotes |
examination |
T2402 |
13533-13544 |
JJ |
denotes |
microscopic |
T2403 |
13557-13559 |
IN |
denotes |
of |
T2404 |
13560-13564 |
NN |
denotes |
skin |
T2405 |
13565-13573 |
NNS |
denotes |
sections |
T2406 |
13574-13575 |
-LRB- |
denotes |
( |
T2407 |
13582-13584 |
NN |
denotes |
2B |
T2408 |
13575-13581 |
NN |
denotes |
Figure |
T2409 |
13584-13585 |
-RRB- |
denotes |
) |
T2410 |
13585-13586 |
. |
denotes |
. |
T2411 |
13586-13784 |
sentence |
denotes |
Furthermore, anaemia and developmental delay present in patients with TTD [24] and in XpdTTD/TTD mice [15] were both partially rescued in compound heterozygous XpdTTD/†XPCS mice (Figure 2D and 2E). |
T2412 |
13587-13598 |
RB |
denotes |
Furthermore |
T2413 |
13714-13721 |
VBN |
denotes |
rescued |
T2414 |
13598-13600 |
, |
denotes |
, |
T2415 |
13600-13607 |
NN |
denotes |
anaemia |
T2416 |
13608-13611 |
CC |
denotes |
and |
T2417 |
13612-13625 |
JJ |
denotes |
developmental |
T2418 |
13626-13631 |
NN |
denotes |
delay |
T2419 |
13632-13639 |
JJ |
denotes |
present |
T2420 |
13640-13642 |
IN |
denotes |
in |
T2421 |
13643-13651 |
NNS |
denotes |
patients |
T2422 |
13652-13656 |
IN |
denotes |
with |
T2423 |
13657-13660 |
NN |
denotes |
TTD |
T2424 |
13661-13662 |
-LRB- |
denotes |
[ |
T2425 |
13662-13664 |
CD |
denotes |
24 |
T2426 |
13664-13665 |
-RRB- |
denotes |
] |
T2427 |
13666-13669 |
CC |
denotes |
and |
T2428 |
13670-13672 |
IN |
denotes |
in |
T2429 |
13673-13679 |
NN |
denotes |
XpdTTD |
T2430 |
13680-13683 |
NN |
denotes |
TTD |
T2431 |
13679-13680 |
HYPH |
denotes |
/ |
T2432 |
13684-13688 |
NNS |
denotes |
mice |
T2433 |
13689-13690 |
-LRB- |
denotes |
[ |
T2434 |
13690-13692 |
CD |
denotes |
15 |
T2435 |
13692-13693 |
-RRB- |
denotes |
] |
T2436 |
13694-13698 |
VBD |
denotes |
were |
T2437 |
13699-13703 |
RB |
denotes |
both |
T2438 |
13704-13713 |
RB |
denotes |
partially |
T2439 |
13722-13724 |
IN |
denotes |
in |
T2440 |
13725-13733 |
JJ |
denotes |
compound |
T2441 |
13760-13764 |
NNS |
denotes |
mice |
T2442 |
13734-13746 |
JJ |
denotes |
heterozygous |
T2443 |
13747-13753 |
NN |
denotes |
XpdTTD |
T2444 |
13754-13759 |
NN |
denotes |
†XPCS |
T2445 |
13753-13754 |
HYPH |
denotes |
/ |
T2446 |
13765-13766 |
-LRB- |
denotes |
( |
T2447 |
13773-13775 |
NN |
denotes |
2D |
T2448 |
13766-13772 |
NN |
denotes |
Figure |
T2449 |
13776-13779 |
CC |
denotes |
and |
T2450 |
13780-13782 |
NN |
denotes |
2E |
T2451 |
13782-13783 |
-RRB- |
denotes |
) |
T2452 |
13783-13784 |
. |
denotes |
. |
T2572 |
0-6 |
NN |
denotes |
Rescue |
T2573 |
7-9 |
IN |
denotes |
of |
T2574 |
10-13805 |
JJ |
denotes |
Progeria in Trichothiodystrophy by Homozygous Lethal Xpd Alleles
Compound Heterozygosity at theXpd Locus
Abstract
Although compound heterozygosity, or the presence of two different mutant alleles of the same gene, is common in human recessive disease, its potential to impact disease outcome has not been well documented. This is most likely because of the inherent difficulty in distinguishing specific biallelic effects from differences in environment or genetic background. We addressed the potential of different recessive alleles to contribute to the enigmatic pleiotropy associated with XPD recessive disorders in compound heterozygous mouse models. Alterations in this essential helicase, with functions in both DNA repair and basal transcription, result in diverse pathologies ranging from elevated UV sensitivity and cancer predisposition to accelerated segmental progeria. We report a variety of biallelic effects on organismal phenotype attributable to combinations of recessive Xpd alleles, including the following: (i) the ability of homozygous lethal Xpd alleles to ameliorate a variety of disease symptoms when their essential basal transcription function is supplied by a different disease-causing allele, (ii) differential developmental and tissue-specific functions of distinct Xpd allele products, and (iii) interallelic complementation, a phenomenon rarely reported at clinically relevant loci in mammals. Our data suggest a re-evaluation of the contribution of “null” alleles to XPD disorders and highlight the potential of combinations of recessive alleles to affect both normal and pathological phenotypic plasticity in mammals.
Effects of mutations in Xpd were investigated in mice. Compound heterozygotes of otherwise homozygous lethal alleles demonstrated interallelic complementation and partial phenotypic rescue of XPD-related disease symptoms.
Introduction
Interallelic complementation is defined as the ability of two differentially mutated alleles to function better together than either can on its own. Despite its near universality in lower organisms [1], its potential to contribute to clinical heterogeneity in human disease is seldom considered. Evidence of interallelic complementation at clinically relevant loci is limited to biochemical and cell-based studies of a handful of metabolic disorders with defects in enzymes including propinyl-CoA carboxylase [2], argininosuccinate lyase [3], galactose-1-phosphate uridylyltransferase [4], and methylmalonyl CoA mutase [5].
Compound heterozygotes are individuals carrying two different mutant alleles of the same gene. In the absence of a dominant (wild-type [wt]) allele, genetic interactions between recessive alleles (referred to here as “biallelic” effects) could result in different phenotypic outcomes including interallelic complementation. Although amelioration of disease symptoms by interallelic complementation would create an ascertainment bias in the clinic, the lack of evidence concerning interallelic complementation or other biallelic effects in human disease is likely caused by the difficulty in distinguishing such effects from environment and genetic background.
XPD encodes one of the two helicase components of basal transcription/DNA repair factor IIH (TFIIH), a ten-subunit, multifunctional complex that is essential for multiple processes, including basal transcription initiation and DNA damage repair via the nucleotide excision repair (NER) pathway [6,7]. Alterations in XPD resulting in defective TFIIH function are associated with UV-sensitive, multisystem disorders including xeroderma pigmentosum (XP), XP combined with Cockayne syndrome (CS), and trichothiodystrophy (TTD) [8–10]. XP is marked by sun-induced pigmentation anomalies and a greater than 1,000-fold elevation in skin cancer risk. Severe cases can also present with growth retardation and primary neurodegeneration [11]. CS and TTD, on the other hand, are segmental progeroid disorders characterised by progressive post-natal growth failure and primary demyelination resulting in severe neurodysfunction, but without a clear cancer predisposition [12–15]. Patients with TTD additionally display hallmark sulphur-deficient brittle hair and nails and scaling skin [13], resulting from a basal transcription defect in specific cell types [16,17]. A related disorder with the cancer predisposition of XP combined with the neurodevelopmental complications of CS (XPCS), although rare, has also been described [18].
Many XPD mutations are associated with an exclusive disease phenotype (e.g., XPDR722W with TTD and XPDR683W with XP) and are thus viewed as causative of the corresponding syndromes. Alleles not associated exclusively with one disorder are considered “likely null” alleles [19,20]. Some of these alleles fail to support viability in a haploid Schizosaccharomyces pombe yeast strain with a null mutation in the XPD homologue rad15 and are thus considered devoid of significant biological activity [19]. This classification of alleles as either causative or null currently defines what we refer to as a “monoallelic” paradigm of XPD disease. However, the identification in recent years of XP complementation group D patients with atypical disease presentation, including symptoms of both XP and TTD [8], casts doubt on the ability of such a monoallelic paradigm to explain clinical heterogeneity in compound heterozygotes.
Previously, we generated a TTD mouse model (XPDR722W) that phenocopies the human syndrome [15,21]. Here we report the generation of additional mutant Xpd alleles that fail to support viability on their own but nevertheless ameliorate TTD-associated premature segmental ageing, cutaneous features, cellular DNA repair capacity, and UV survival when present in a compound heterozygote state.
Results
Generation of Xpd Compound Heterozygotes
We generated an Xpd knock-in allele with a point mutation encoding a single amino acid change (XPDG602D) found in the XPCS patient XPCS2 (Figure 1A–1C). mRNA expression from the targeted allele could be detected in embryonic stem cells by RT-PCR (Figure 1D), although expression was reduced approximately 5-fold relative to wt mRNA transcript levels as determined by Northern blotting of RNA from the testis of heterozygous animals (Figure 1E). Because patient XPCS2 was a hemizygote with mutant XPD protein (XPDG602D) expressed from a single allele, the corresponding mutation was expected to be viable in the homozygous state. However, homozygous mutant mice were not observed, neither amongst live births nor embryonic day 13.5 (E13.5) or E3.5 embryos (Table 1). The corresponding hypomorphic, mutant allele was thus designated as homozygous lethal (†XPCS). Homozygous lethality of the XPCS allele is likely due to reduced levels of expression of this essential protein as a result of gene targeting (Figure 1A) rather than to the mutation itself. Xpd ablation (XpdKO /KO ) is similarly incompatible with life beyond the earliest stages of embryogenesis [22]. Consistent with this interpretation, a different targeted Xpd mutation encoding XPDR683W, which is associated with XP in the homozygous state in humans, was similarly underexpressed and lethal in the homozygous state (designated as †XP allele) (Figure 1A–1C; Table 1; unpublished data). Also, a different targeting approach leading to the use of the native 3′UTR and removal of the neo gene resulted in normalisation of XpdXPCS mRNA levels and viable homozygous XpdXPCS/XPCS (XPDG602D/G602D) animals [23].
Figure 1 Targeting of the Mouse Xpd Gene
(A) Schematic representation of the genomic structure and partial restriction map of the wt and targeted mouse Xpd loci. For the wt Xpd allele, shaded boxes represent coding regions of exons 12 and 19–23; the 3′UTR is represented by an open box. TGA indicates the translational stop codon; PolyA indicates the polyadenylation signal. For the XpdTTD targeted allele, the 194–base pair (bp) human XPD cDNA fragment fused to exon 22 is indicated as a striped box including the TTD (R722W) mutation indicated by a vertical arrow. Chicken β-globin exons 2 and 3 including the 3′UTR are indicated as black boxes with corresponding Roman numerals followed by the β-globin polyadenylation signal (PolyA*). For the Xpd†XP and Xpd†XPCS targeted alleles, vertical arrows indicate XPCS (G602D-encoding) and XP (R683W-encoding) mutations in exons 19 and 22, respectively. The unique 3′ probe located outside the targeting construct is marked by a thick black line. Restriction sites: B, BamHI; C, ClaI; E, EcoRI; H, HindIII; Hp, HpaI; Sf, SfiI.
(B) Southern blot analysis of EcoRI-digested genomic DNA from wt, Xpd†XPCS/wt, and Xpd†XP/wt recombinant embryonic stem cell clones hybridised with the 3′ probe depicted in (A). The wt allele yields a 6.5-kilobase (kb) fragment, whereas both targeted Xpd†XP and Xpd†XPCS alleles yield a 5.1-kb fragment.
(C) Genotyping of wt and targeted alleles by PCR using primers F2, R1, and mR as indicated in (A) yields fragments of 399 bp and 468 bp, respectively.
(D) RT-PCR detection of mRNA expression originating from the targeted †XP and †XPCS alleles in embryonic stem cell clones using primers F1 (hybridising outside the targeting construct) and mR as indicated in (A) results in a 1,416-bp fragment.
(E) Northern blot analysis of total RNA isolated from testis of homozygous wt and XpdTTD/TTD, heterozygous Xpd†XPCS/wt and XpdTTD/wt, and compound heterozygous Xpd†XPCS/TTD mice as indicated. Hybridisation with a 1.4-kb mouse Xpd cDNA probe detects mRNAs of 4, 3.3, and 2.7 kb from wt, Xpd†XPCS, and XpdTTD alleles, respectively. An ethidium bromide (EtBr)–stained gel showing the amount of total RNA loaded is shown below.
Table 1 Frequency of Xpd†XP/†XP, Xpd†XPCS/†XPCS, and Compound Heterozygous Xpd†XP/†XPCS Embryos and Offspring
“Null” Allele Can Alleviate Developmental Delay, Skin, and Hair Features of TTD
To test the potential of a homozygous lethal “null” allele to nevertheless contribute to organismal phenotype, we combined an Xpd†XPCS allele with a viable XpdTTD allele by crossing the corresponding heterozygous animals. Similar to hemizygous TTD mice carrying one true Xpd knockout allele (XpdTTD/KO), compound heterozygous XpdTTD/†XPCS mice were born at the expected Mendelian frequencies. Expression from the Xpd†XPCS allele was also reduced in the testis of compound heterozygous animals, whereas expression from the XpdTTD allele was increased relative to wt by ~5-fold (Figure 1E). Because of a lack of available antibodies and the inability to distinguish amongst various mutant forms of XPD differing only by single amino acid substitutions, we were unable to ascertain the relative amount of XPD protein from the different alleles.
Despite reduced levels of mRNA expression, the homozygous lethal Xpd†XPCS allele ameliorated multiple XpdTTD-associated disease symptoms in compound heterozygous XpdTTD/†XPCS animals including the hallmark brittle hair and cutaneous features fully penetrant in homo- and hemizygous TTD mice (Figure 2A–2C). In marked contrast to XpdTTD/TTD (and XpdTTD/KO) mice, which display complete hair loss in the first hair cycle and partial hair loss in subsequent cycles throughout their lives [21], compound heterozygous XpdTTD/†XPCS mice displayed some hair loss only during the first hair cycle and only locally at the back (Figure 2A). Scanning electron microscope analysis of XpdTTD/†XPCS hair revealed an almost normal appearance, with TTD-like features such as broken hairs found only at very low frequency (unpublished data). Amino acid analysis confirmed that cysteine levels in the hair of the XpdTTD/†XPCS mice were significantly higher than in XpdTTD/TTD animals, but remained below the wt level (Figure 2C). TTD hemizygotes (XpdTTD/KO) do not display significant differences in cutaneous features and longevity relative to homozygous XpdTTD/TTD mice [21].
Figure 2 Partial Rescue of TTD Cutaneous, Blood, and Developmental Phenotypes in Compound Heterozygous XpdTTD/†XPCS Mice
(A) Photographs of 5-mo-old homozygous XpdTTD/TTD, compound heterozygous XpdTTD/†XPCS, and wt mice. Insets: images of first-round hair loss.
(B) Histological analysis of the skin of XpdTTD/TTD, XpdTTD/†XPCS, and wt mice. TTD-associated acanthosis (thicker epidermis, indicated by solid vertical line), pronounced granular layer (indicated by arrows), and sebacious gland hyperplasia (indicated by dotted vertical line) were absent in the epidermis of XpdTTD/†XPCS and wt mice. Magnification 400×.
(C) Cysteine content of hair from wt, XpdTTD/TTD, and XpdTTD/†XPCS mice. The p-value indicates significant differences between mutants and wt, as well as between XpdTTD/TTD and XpdTTD/†XPCS mice. Error bars indicate standard error of the mean (SEM).
(D) Hematocrit values from blood of XpdTTD/TTD and XpdTTD/†XPCS mice. The p-values indicate the significance of the difference relative to wt. Error bars indicate SEM.
(E) Body weights of developing XpdTTD/TTD and XpdTTD/†XPCS mice after weaning plotted as a percentage of the weight of age-matched control wt and heterozygote (hz) littermates (set at 100%). Error bars indicate SEM. Other prominent TTD features in the epidermis, including acanthosis (thickening of the layer of the nucleated cells), hyperkeratosis (prominent thickening of the cornified layer), and pronounced granular layer and sebacious gland hyperplasia (causing greasy appearance of the hair), were absent in the skin of XpdTTD/†XPCS mice, as established by blind microscopic examination of skin sections (Figure 2B). Furthermore, anaemia and developmental delay present in patients with TTD [24] and in XpdTTD/TTD mice [15] were both partially rescued in compound heterozygous XpdTTD/†XPCS mice (Figure 2D and 2E).
Rescue of Progeroid |
T2575 |
13806-13814 |
NNS |
denotes |
Features |
T2576 |
13815-13817 |
IN |
denotes |
in |
T2577 |
13818-13821 |
NN |
denotes |
TTD |
T2578 |
13822-13826 |
NNS |
denotes |
Mice |
T2579 |
13827-13829 |
IN |
denotes |
by |
T2580 |
13830-13840 |
JJ |
denotes |
Homozygous |
T2581 |
13852-13859 |
NNS |
denotes |
Alleles |
T2582 |
13841-13847 |
JJ |
denotes |
Lethal |
T2583 |
13848-13851 |
NN |
denotes |
Xpd |
T2584 |
13859-14093 |
sentence |
denotes |
Because patients with TTD, XPCS, and CS (but not XP) and the corresponding mouse models share similar accelerated progeroid symptoms [12,13,15,23], we next addressed ageing-related parameters in compound heterozygous mice (Figure 3). |
T2585 |
13860-13867 |
IN |
denotes |
Because |
T2586 |
13948-13953 |
VBP |
denotes |
share |
T2587 |
13868-13876 |
NNS |
denotes |
patients |
T2588 |
13877-13881 |
IN |
denotes |
with |
T2589 |
13882-13885 |
NN |
denotes |
TTD |
T2590 |
13885-13887 |
, |
denotes |
, |
T2591 |
13887-13891 |
NN |
denotes |
XPCS |
T2592 |
13891-13893 |
, |
denotes |
, |
T2593 |
13893-13896 |
CC |
denotes |
and |
T2594 |
13897-13899 |
NN |
denotes |
CS |
T2595 |
13900-13901 |
-LRB- |
denotes |
( |
T2596 |
13901-13904 |
CC |
denotes |
but |
T2597 |
13905-13908 |
RB |
denotes |
not |
T2598 |
13909-13911 |
NN |
denotes |
XP |
T2599 |
13911-13912 |
-RRB- |
denotes |
) |
T2600 |
13913-13916 |
CC |
denotes |
and |
T2601 |
13917-13920 |
DT |
denotes |
the |
T2602 |
13941-13947 |
NNS |
denotes |
models |
T2603 |
13921-13934 |
VBG |
denotes |
corresponding |
T2604 |
13935-13940 |
NN |
denotes |
mouse |
T2605 |
14016-14025 |
VBD |
denotes |
addressed |
T2606 |
13954-13961 |
JJ |
denotes |
similar |
T2607 |
13984-13992 |
NNS |
denotes |
symptoms |
T2608 |
13962-13973 |
VBN |
denotes |
accelerated |
T2609 |
13974-13983 |
NN |
denotes |
progeroid |
T2610 |
13993-13994 |
-LRB- |
denotes |
[ |
T2611 |
14003-14005 |
CD |
denotes |
23 |
T2612 |
13994-13996 |
CD |
denotes |
12 |
T2613 |
13996-13997 |
, |
denotes |
, |
T2614 |
13997-13999 |
CD |
denotes |
13 |
T2615 |
13999-14000 |
, |
denotes |
, |
T2616 |
14000-14002 |
CD |
denotes |
15 |
T2617 |
14002-14003 |
, |
denotes |
, |
T2618 |
14005-14006 |
-RRB- |
denotes |
] |
T2619 |
14006-14008 |
, |
denotes |
, |
T2620 |
14008-14010 |
PRP |
denotes |
we |
T2621 |
14011-14015 |
RB |
denotes |
next |
T2622 |
14026-14032 |
JJ |
denotes |
ageing |
T2623 |
14033-14040 |
JJ |
denotes |
related |
T2624 |
14032-14033 |
HYPH |
denotes |
- |
T2625 |
14041-14051 |
NNS |
denotes |
parameters |
T2626 |
14052-14054 |
IN |
denotes |
in |
T2627 |
14055-14063 |
JJ |
denotes |
compound |
T2628 |
14077-14081 |
NNS |
denotes |
mice |
T2629 |
14064-14076 |
JJ |
denotes |
heterozygous |
T2630 |
14082-14083 |
-LRB- |
denotes |
( |
T2631 |
14083-14089 |
NN |
denotes |
Figure |
T2632 |
14090-14091 |
CD |
denotes |
3 |
T2633 |
14091-14092 |
-RRB- |
denotes |
) |
T2634 |
14092-14093 |
. |
denotes |
. |
T2635 |
14093-14356 |
sentence |
denotes |
Whereas XpdTTD/TTD animals show reduced bone mineral density as an indication of the early onset of osteoporosis before ~14 mo of age [15], tail vertebrae from compound heterozygous XpdTTD/†XPCS mice were comparable to wt even at 20 mo of age (Figure 3B and 3C). |
T2636 |
14094-14101 |
IN |
denotes |
Whereas |
T2637 |
14121-14125 |
VBP |
denotes |
show |
T2638 |
14102-14108 |
NN |
denotes |
XpdTTD |
T2639 |
14109-14112 |
NN |
denotes |
TTD |
T2640 |
14108-14109 |
HYPH |
denotes |
/ |
T2641 |
14113-14120 |
NNS |
denotes |
animals |
T2642 |
14294-14298 |
VBD |
denotes |
were |
T2643 |
14126-14133 |
VBN |
denotes |
reduced |
T2644 |
14147-14154 |
NN |
denotes |
density |
T2645 |
14134-14138 |
NN |
denotes |
bone |
T2646 |
14139-14146 |
NN |
denotes |
mineral |
T2647 |
14155-14157 |
IN |
denotes |
as |
T2648 |
14158-14160 |
DT |
denotes |
an |
T2649 |
14161-14171 |
NN |
denotes |
indication |
T2650 |
14172-14174 |
IN |
denotes |
of |
T2651 |
14175-14178 |
DT |
denotes |
the |
T2652 |
14185-14190 |
NN |
denotes |
onset |
T2653 |
14179-14184 |
JJ |
denotes |
early |
T2654 |
14191-14193 |
IN |
denotes |
of |
T2655 |
14194-14206 |
NN |
denotes |
osteoporosis |
T2656 |
14207-14213 |
IN |
denotes |
before |
T2657 |
14214-14215 |
SYM |
denotes |
~ |
T2658 |
14215-14217 |
CD |
denotes |
14 |
T2659 |
14218-14220 |
NNS |
denotes |
mo |
T2660 |
14221-14223 |
IN |
denotes |
of |
T2661 |
14224-14227 |
NN |
denotes |
age |
T2662 |
14228-14229 |
-LRB- |
denotes |
[ |
T2663 |
14229-14231 |
CD |
denotes |
15 |
T2664 |
14231-14232 |
-RRB- |
denotes |
] |
T2665 |
14232-14234 |
, |
denotes |
, |
T2666 |
14234-14238 |
NN |
denotes |
tail |
T2667 |
14239-14248 |
NNS |
denotes |
vertebrae |
T2668 |
14249-14253 |
IN |
denotes |
from |
T2669 |
14254-14262 |
NN |
denotes |
compound |
T2670 |
14289-14293 |
NNS |
denotes |
mice |
T2671 |
14263-14275 |
JJ |
denotes |
heterozygous |
T2672 |
14276-14282 |
NN |
denotes |
XpdTTD |
T2673 |
14283-14288 |
NN |
denotes |
†XPCS |
T2674 |
14282-14283 |
HYPH |
denotes |
/ |
T2675 |
14299-14309 |
JJ |
denotes |
comparable |
T2676 |
14310-14312 |
IN |
denotes |
to |
T2677 |
14313-14315 |
NN |
denotes |
wt |
T2678 |
14316-14320 |
RB |
denotes |
even |
T2679 |
14321-14323 |
IN |
denotes |
at |
T2680 |
14324-14326 |
CD |
denotes |
20 |
T2681 |
14327-14329 |
NNS |
denotes |
mo |
T2682 |
14330-14332 |
IN |
denotes |
of |
T2683 |
14333-14336 |
NN |
denotes |
age |
T2684 |
14337-14338 |
-LRB- |
denotes |
( |
T2685 |
14345-14347 |
NN |
denotes |
3B |
T2686 |
14338-14344 |
NN |
denotes |
Figure |
T2687 |
14348-14351 |
CC |
denotes |
and |
T2688 |
14352-14354 |
NN |
denotes |
3C |
T2689 |
14354-14355 |
-RRB- |
denotes |
) |
T2690 |
14355-14356 |
. |
denotes |
. |
T2691 |
14356-14528 |
sentence |
denotes |
Furthermore, whereas XpdTTD/TTD mice developed kyphosis earlier than wt animals (onset ~3 mo versus 12–20 mo), compound heterozygous XpdTTD/†XPCS mice did not (Figure 3B). |
T2692 |
14357-14368 |
RB |
denotes |
Furthermore |
T2693 |
14524-14526 |
NN |
denotes |
3B |
T2694 |
14368-14370 |
, |
denotes |
, |
T2695 |
14370-14377 |
IN |
denotes |
whereas |
T2696 |
14394-14403 |
VBD |
denotes |
developed |
T2697 |
14378-14384 |
NN |
denotes |
XpdTTD |
T2698 |
14385-14388 |
NN |
denotes |
TTD |
T2699 |
14384-14385 |
HYPH |
denotes |
/ |
T2700 |
14389-14393 |
NNS |
denotes |
mice |
T2701 |
14404-14412 |
NN |
denotes |
kyphosis |
T2702 |
14413-14420 |
RBR |
denotes |
earlier |
T2703 |
14421-14425 |
IN |
denotes |
than |
T2704 |
14426-14428 |
NN |
denotes |
wt |
T2705 |
14429-14436 |
NNS |
denotes |
animals |
T2706 |
14437-14438 |
-LRB- |
denotes |
( |
T2707 |
14438-14443 |
NN |
denotes |
onset |
T2708 |
14444-14445 |
SYM |
denotes |
~ |
T2709 |
14445-14446 |
CD |
denotes |
3 |
T2710 |
14447-14449 |
NNS |
denotes |
mo |
T2711 |
14450-14456 |
CC |
denotes |
versus |
T2712 |
14457-14459 |
CD |
denotes |
12 |
T2713 |
14460-14462 |
CD |
denotes |
20 |
T2714 |
14459-14460 |
SYM |
denotes |
– |
T2715 |
14463-14465 |
NNS |
denotes |
mo |
T2716 |
14465-14466 |
-RRB- |
denotes |
) |
T2717 |
14466-14468 |
, |
denotes |
, |
T2718 |
14468-14476 |
JJ |
denotes |
compound |
T2719 |
14503-14507 |
NNS |
denotes |
mice |
T2720 |
14477-14489 |
JJ |
denotes |
heterozygous |
T2721 |
14490-14496 |
NN |
denotes |
XpdTTD |
T2722 |
14497-14502 |
NN |
denotes |
†XPCS |
T2723 |
14496-14497 |
HYPH |
denotes |
/ |
T2724 |
14508-14511 |
VBD |
denotes |
did |
T2725 |
14512-14515 |
RB |
denotes |
not |
T2726 |
14516-14517 |
-LRB- |
denotes |
( |
T2727 |
14517-14523 |
NN |
denotes |
Figure |
T2728 |
14526-14527 |
-RRB- |
denotes |
) |
T2729 |
14527-14528 |
. |
denotes |
. |
T2730 |
14528-14740 |
sentence |
denotes |
Overall appearance and body weight curves revealed that TTD-associated age-related premature cachexia and lack of general fitness were fully rescued in compound heterozygous XpdTTD/†XPCS mice (Figure 3A and 3D). |
T2731 |
14529-14536 |
JJ |
denotes |
Overall |
T2732 |
14537-14547 |
NN |
denotes |
appearance |
T2733 |
14571-14579 |
VBD |
denotes |
revealed |
T2734 |
14548-14551 |
CC |
denotes |
and |
T2735 |
14552-14556 |
NN |
denotes |
body |
T2736 |
14557-14563 |
NN |
denotes |
weight |
T2737 |
14564-14570 |
NNS |
denotes |
curves |
T2738 |
14580-14584 |
IN |
denotes |
that |
T2739 |
14670-14677 |
VBN |
denotes |
rescued |
T2740 |
14585-14588 |
NN |
denotes |
TTD |
T2741 |
14589-14599 |
JJ |
denotes |
associated |
T2742 |
14588-14589 |
HYPH |
denotes |
- |
T2743 |
14622-14630 |
NN |
denotes |
cachexia |
T2744 |
14600-14603 |
NN |
denotes |
age |
T2745 |
14604-14611 |
JJ |
denotes |
related |
T2746 |
14603-14604 |
HYPH |
denotes |
- |
T2747 |
14612-14621 |
JJ |
denotes |
premature |
T2748 |
14631-14634 |
CC |
denotes |
and |
T2749 |
14635-14639 |
NN |
denotes |
lack |
T2750 |
14640-14642 |
IN |
denotes |
of |
T2751 |
14643-14650 |
JJ |
denotes |
general |
T2752 |
14651-14658 |
NN |
denotes |
fitness |
T2753 |
14659-14663 |
VBD |
denotes |
were |
T2754 |
14664-14669 |
RB |
denotes |
fully |
T2755 |
14678-14680 |
IN |
denotes |
in |
T2756 |
14681-14689 |
JJ |
denotes |
compound |
T2757 |
14716-14720 |
NNS |
denotes |
mice |
T2758 |
14690-14702 |
JJ |
denotes |
heterozygous |
T2759 |
14703-14709 |
NN |
denotes |
XpdTTD |
T2822 |
16400-16402 |
IN |
denotes |
by |
T2823 |
16403-16411 |
VBG |
denotes |
crossing |
T2824 |
16412-16415 |
DT |
denotes |
the |
T2825 |
16443-16450 |
NNS |
denotes |
animals |
T2826 |
16416-16429 |
VBG |
denotes |
corresponding |
T2827 |
16430-16442 |
JJ |
denotes |
heterozygous |
T2828 |
16450-16451 |
. |
denotes |
. |
T2829 |
16451-16897 |
sentence |
denotes |
Similar to the Xpd †XPCS allele, the homozygous lethal Xpd †XP allele rescued cutaneous symptoms including hair loss (except locally during the first round; unpublished data), reduced cysteine content (cysteine index 9.3 ± 0.9 standard deviation [87% of wt], p = 0.01 versus TTD), ageing-associated premature cachexia (males and females were 36.1 ± 6.4 g [93% of wt] and 39.2 ± 3.2 g [116% of wt], respectively), and reduced life span (Table 2). |
T2830 |
16452-16459 |
JJ |
denotes |
Similar |
T2831 |
16522-16529 |
VBD |
denotes |
rescued |
T2832 |
16460-16462 |
IN |
denotes |
to |
T2833 |
16463-16466 |
DT |
denotes |
the |
T2834 |
16477-16483 |
NN |
denotes |
allele |
T2835 |
16467-16476 |
NN |
denotes |
Xpd †XPCS |
T2836 |
16483-16485 |
, |
denotes |
, |
T2837 |
16485-16488 |
DT |
denotes |
the |
T2838 |
16515-16521 |
NN |
denotes |
allele |
T2839 |
16489-16499 |
JJ |
denotes |
homozygous |
T2840 |
16500-16506 |
JJ |
denotes |
lethal |
T2841 |
16507-16514 |
NN |
denotes |
Xpd †XP |
T2842 |
16530-16539 |
JJ |
denotes |
cutaneous |
T2843 |
16540-16548 |
NNS |
denotes |
symptoms |
T2844 |
16549-16558 |
VBG |
denotes |
including |
T2845 |
16559-16563 |
NN |
denotes |
hair |
T2846 |
16564-16568 |
NN |
denotes |
loss |
T2847 |
16569-16570 |
-LRB- |
denotes |
( |
T2848 |
16621-16625 |
NNS |
denotes |
data |
T2849 |
16570-16576 |
IN |
denotes |
except |
T2850 |
16577-16584 |
RB |
denotes |
locally |
T2851 |
16585-16591 |
IN |
denotes |
during |
T2852 |
16592-16595 |
DT |
denotes |
the |
T2853 |
16602-16607 |
NN |
denotes |
round |
T2854 |
16596-16601 |
JJ |
denotes |
first |
T2855 |
16607-16608 |
: |
denotes |
; |
T2856 |
16609-16620 |
JJ |
denotes |
unpublished |
T2857 |
16625-16626 |
-RRB- |
denotes |
) |
T2858 |
16626-16628 |
, |
denotes |
, |
T2859 |
16628-16635 |
VBN |
denotes |
reduced |
T2860 |
16645-16652 |
NN |
denotes |
content |
T2861 |
16636-16644 |
NN |
denotes |
cysteine |
T2862 |
16653-16654 |
-LRB- |
denotes |
( |
T2863 |
16663-16668 |
NN |
denotes |
index |
T2864 |
16654-16662 |
NN |
denotes |
cysteine |
T2865 |
16669-16672 |
CD |
denotes |
9.3 |
T2866 |
16673-16674 |
SYM |
denotes |
± |
T2867 |
16675-16678 |
CD |
denotes |
0.9 |
T2868 |
16688-16697 |
NN |
denotes |
deviation |
T2869 |
16679-16687 |
JJ |
denotes |
standard |
T2870 |
16698-16699 |
-LRB- |
denotes |
[ |
T2871 |
16701-16702 |
NN |
denotes |
% |
T2872 |
16699-16701 |
CD |
denotes |
87 |
T2873 |
16703-16705 |
IN |
denotes |
of |
T2874 |
16706-16708 |
NN |
denotes |
wt |
T2875 |
16708-16709 |
-RRB- |
denotes |
] |
T2876 |
16709-16711 |
, |
denotes |
, |
T2877 |
16711-16712 |
NN |
denotes |
p |
T2878 |
16727-16730 |
NN |
denotes |
TTD |
T2879 |
16713-16714 |
SYM |
denotes |
= |
T2880 |
16715-16719 |
CD |
denotes |
0.01 |
T2881 |
16720-16726 |
CC |
denotes |
versus |
T2882 |
16730-16731 |
-RRB- |
denotes |
) |
T2883 |
16731-16733 |
, |
denotes |
, |
T2884 |
16733-16739 |
NN |
denotes |
ageing |
T2885 |
16740-16750 |
VBN |
denotes |
associated |
T2886 |
16739-16740 |
HYPH |
denotes |
- |
T2887 |
16761-16769 |
NN |
denotes |
cachexia |
T2888 |
16751-16760 |
JJ |
denotes |
premature |
T2889 |
16770-16771 |
-LRB- |
denotes |
( |
T2890 |
16789-16793 |
VBD |
denotes |
were |
T2891 |
16771-16776 |
NNS |
denotes |
males |
T2892 |
16777-16780 |
CC |
denotes |
and |
T2893 |
16781-16788 |
NNS |
denotes |
females |
T2894 |
16794-16798 |
CD |
denotes |
36.1 |
T2895 |
16801-16804 |
CD |
denotes |
6.4 |
T2896 |
16799-16800 |
SYM |
denotes |
± |
T2897 |
16805-16806 |
NNS |
denotes |
g |
T2898 |
16807-16808 |
-LRB- |
denotes |
[ |
T2899 |
16810-16811 |
NN |
denotes |
% |
T2900 |
16808-16810 |
CD |
denotes |
93 |
T2901 |
16812-16814 |
IN |
denotes |
of |
T2902 |
16815-16817 |
NN |
denotes |
wt |
T2903 |
16817-16818 |
-RRB- |
denotes |
] |
T2904 |
16819-16822 |
CC |
denotes |
and |
T2905 |
16823-16827 |
CD |
denotes |
39.2 |
T2906 |
16830-16833 |
CD |
denotes |
3.2 |
T2907 |
16828-16829 |
SYM |
denotes |
± |
T2908 |
16834-16835 |
NNS |
denotes |
g |
T2909 |
16836-16837 |
-LRB- |
denotes |
[ |
T2910 |
16840-16841 |
NN |
denotes |
% |
T2911 |
16837-16840 |
CD |
denotes |
116 |
T2912 |
16842-16844 |
IN |
denotes |
of |
T2913 |
16845-16847 |
NN |
denotes |
wt |
T2914 |
16847-16848 |
-RRB- |
denotes |
] |
T2915 |
16848-16850 |
, |
denotes |
, |
T2916 |
16850-16862 |
RB |
denotes |
respectively |
T2917 |
16862-16863 |
-RRB- |
denotes |
) |
T2918 |
16863-16865 |
, |
denotes |
, |
T2919 |
16865-16868 |
CC |
denotes |
and |
T2920 |
16869-16876 |
VBN |
denotes |
reduced |
T2921 |
16882-16886 |
NN |
denotes |
span |
T2922 |
16877-16881 |
NN |
denotes |
life |
T2923 |
16887-16888 |
-LRB- |
denotes |
( |
T2924 |
16888-16893 |
NN |
denotes |
Table |
T2925 |
16894-16895 |
CD |
denotes |
2 |
T2926 |
16895-16896 |
-RRB- |
denotes |
) |
T2927 |
16896-16897 |
. |
denotes |
. |
T2928 |
16897-17106 |
sentence |
denotes |
Taken together, these data indicate that two independent alleles, which on their own are unable to support viability (Table 1), were nonetheless able to ameliorate TTD-associated phenotypes in vivo (Table 2). |
T2929 |
16898-16903 |
VBN |
denotes |
Taken |
T2930 |
16925-16933 |
VBP |
denotes |
indicate |
T2931 |
16904-16912 |
RB |
denotes |
together |
T2932 |
16912-16914 |
, |
denotes |
, |
T2933 |
16914-16919 |
DT |
denotes |
these |
T2934 |
16920-16924 |
NNS |
denotes |
data |
T2935 |
16934-16938 |
IN |
denotes |
that |
T2936 |
17026-17030 |
VBD |
denotes |
were |
T2937 |
16939-16942 |
CD |
denotes |
two |
T2938 |
16955-16962 |
NNS |
denotes |
alleles |
T2939 |
16943-16954 |
JJ |
denotes |
independent |
T2940 |
16962-16964 |
, |
denotes |
, |
T2941 |
16964-16969 |
WDT |
denotes |
which |
T2942 |
16983-16986 |
VBP |
denotes |
are |
T2943 |
16970-16972 |
IN |
denotes |
on |
T2944 |
16973-16978 |
PRP$ |
denotes |
their |
T2945 |
16979-16982 |
NN |
denotes |
own |
T2946 |
16987-16993 |
JJ |
denotes |
unable |
T2947 |
16994-16996 |
TO |
denotes |
to |
T2948 |
16997-17004 |
VB |
denotes |
support |
T2949 |
17005-17014 |
NN |
denotes |
viability |
T2950 |
17015-17016 |
-LRB- |
denotes |
( |
T2951 |
17016-17021 |
NN |
denotes |
Table |
T2952 |
17022-17023 |
CD |
denotes |
1 |
T2953 |
17023-17024 |
-RRB- |
denotes |
) |
T2954 |
17024-17026 |
, |
denotes |
, |
T2955 |
17031-17042 |
RB |
denotes |
nonetheless |
T2956 |
17043-17047 |
JJ |
denotes |
able |
T2957 |
17048-17050 |
TO |
denotes |
to |
T2958 |
17051-17061 |
VB |
denotes |
ameliorate |
T2959 |
17062-17065 |
NN |
denotes |
TTD |
T2960 |
17066-17076 |
VBN |
denotes |
associated |
T2961 |
17065-17066 |
HYPH |
denotes |
- |
T2962 |
17077-17087 |
NNS |
denotes |
phenotypes |
T2963 |
17088-17090 |
FW |
denotes |
in |
T2964 |
17091-17095 |
FW |
denotes |
vivo |
T2965 |
17096-17097 |
-LRB- |
denotes |
( |
T2966 |
17097-17102 |
NN |
denotes |
Table |
T2967 |
17103-17104 |
CD |
denotes |
2 |
T2968 |
17104-17105 |
-RRB- |
denotes |
) |
T2969 |
17105-17106 |
. |
denotes |
. |
T3312 |
17108-17117 |
JJ |
denotes |
Molecular |
T3313 |
17118-17128 |
NNS |
denotes |
Mechanisms |
T3314 |
17129-17131 |
IN |
denotes |
of |
T3315 |
17132-17141 |
JJ |
denotes |
Biallelic |
T3316 |
17142-17149 |
NNS |
denotes |
Effects |
T3317 |
17149-17448 |
sentence |
denotes |
We next turned to UV-based cellular assays including unscheduled DNA synthesis after UV irradiation (UV-UDS), recovery of RNA synthesis after UV irradiation (UV-RRS), and UV survival, which report on the NER subpathways (global genome NER and transcription-coupled NER) and total NER, respectively. |
T3318 |
17150-17152 |
PRP |
denotes |
We |
T3319 |
17158-17164 |
VBD |
denotes |
turned |
T3320 |
17153-17157 |
RB |
denotes |
next |
T3321 |
17165-17167 |
IN |
denotes |
to |
T3322 |
17168-17170 |
NN |
denotes |
UV |
T3323 |
17171-17176 |
VBN |
denotes |
based |
T3324 |
17170-17171 |
HYPH |
denotes |
- |
T3325 |
17186-17192 |
NNS |
denotes |
assays |
T3326 |
17177-17185 |
JJ |
denotes |
cellular |
T3327 |
17193-17202 |
VBG |
denotes |
including |
T3328 |
17203-17214 |
JJ |
denotes |
unscheduled |
T3329 |
17219-17228 |
NN |
denotes |
synthesis |
T3330 |
17215-17218 |
NN |
denotes |
DNA |
T3331 |
17229-17234 |
IN |
denotes |
after |
T3332 |
17235-17237 |
NN |
denotes |
UV |
T3333 |
17238-17249 |
NN |
denotes |
irradiation |
T3334 |
17250-17251 |
-LRB- |
denotes |
( |
T3335 |
17254-17257 |
NN |
denotes |
UDS |
T3336 |
17251-17253 |
NN |
denotes |
UV |
T3337 |
17253-17254 |
HYPH |
denotes |
- |
T3338 |
17257-17258 |
-RRB- |
denotes |
) |
T3339 |
17258-17260 |
, |
denotes |
, |
T3340 |
17260-17268 |
NN |
denotes |
recovery |
T3341 |
17269-17271 |
IN |
denotes |
of |
T3342 |
17272-17275 |
NN |
denotes |
RNA |
T3343 |
17276-17285 |
NN |
denotes |
synthesis |
T3344 |
17286-17291 |
IN |
denotes |
after |
T3345 |
17292-17294 |
NN |
denotes |
UV |
T3346 |
17295-17306 |
NN |
denotes |
irradiation |
T3347 |
17307-17308 |
-LRB- |
denotes |
( |
T3348 |
17311-17314 |
NN |
denotes |
RRS |
T3349 |
17308-17310 |
NN |
denotes |
UV |
T3350 |
17310-17311 |
HYPH |
denotes |
- |
T3351 |
17314-17315 |
-RRB- |
denotes |
) |
T3352 |
17315-17317 |
, |
denotes |
, |
T3353 |
17317-17320 |
CC |
denotes |
and |
T3354 |
17321-17323 |
NN |
denotes |
UV |
T3355 |
17324-17332 |
NN |
denotes |
survival |
T3356 |
17332-17334 |
, |
denotes |
, |
T3357 |
17334-17339 |
WDT |
denotes |
which |
T3358 |
17340-17346 |
VBP |
denotes |
report |
T3359 |
17347-17349 |
IN |
denotes |
on |
T3360 |
17350-17353 |
DT |
denotes |
the |
T3361 |
17358-17369 |
NNS |
denotes |
subpathways |
T3362 |
17354-17357 |
NN |
denotes |
NER |
T3363 |
17370-17371 |
-LRB- |
denotes |
( |
T3364 |
17385-17388 |
NN |
denotes |
NER |
T3365 |
17371-17377 |
JJ |
denotes |
global |
T3366 |
17378-17384 |
NN |
denotes |
genome |
T3367 |
17389-17392 |
CC |
denotes |
and |
T3368 |
17393-17406 |
NN |
denotes |
transcription |
T3369 |
17407-17414 |
VBN |
denotes |
coupled |
T3370 |
17406-17407 |
HYPH |
denotes |
- |
T3371 |
17415-17418 |
NN |
denotes |
NER |
T3372 |
17418-17419 |
-RRB- |
denotes |
) |
T3373 |
17420-17423 |
CC |
denotes |
and |
T3374 |
17424-17429 |
JJ |
denotes |
total |
T3375 |
17430-17433 |
NN |
denotes |
NER |
T3376 |
17433-17435 |
, |
denotes |
, |
T3377 |
17435-17447 |
RB |
denotes |
respectively |
T3378 |
17447-17448 |
. |
denotes |
. |
T3379 |
17448-17574 |
sentence |
denotes |
In none of these assays was the response to UV improved in compound heterozygotes relative to TTD homozygotes (Figure 4A–4C). |
T3380 |
17449-17451 |
IN |
denotes |
In |
T3381 |
17496-17504 |
VBN |
denotes |
improved |
T3382 |
17452-17456 |
NN |
denotes |
none |
T3383 |
17457-17459 |
IN |
denotes |
of |
T3384 |
17460-17465 |
DT |
denotes |
these |
T3385 |
17466-17472 |
NNS |
denotes |
assays |
T3386 |
17473-17476 |
VBD |
denotes |
was |
T3387 |
17477-17480 |
DT |
denotes |
the |
T3388 |
17481-17489 |
NN |
denotes |
response |
T3389 |
17490-17492 |
IN |
denotes |
to |
T3390 |
17493-17495 |
NN |
denotes |
UV |
T3391 |
17505-17507 |
IN |
denotes |
in |
T3392 |
17508-17516 |
NN |
denotes |
compound |
T3393 |
17517-17530 |
NNS |
denotes |
heterozygotes |
T3394 |
17531-17539 |
JJ |
denotes |
relative |
T3395 |
17540-17542 |
IN |
denotes |
to |
T3396 |
17543-17546 |
NN |
denotes |
TTD |
T3397 |
17547-17558 |
NNS |
denotes |
homozygotes |
T3398 |
17559-17560 |
-LRB- |
denotes |
( |
T3399 |
17567-17569 |
NN |
denotes |
4A |
T3400 |
17560-17566 |
NN |
denotes |
Figure |
T3401 |
17569-17570 |
SYM |
denotes |
– |
T3402 |
17570-17572 |
NN |
denotes |
4C |
T3403 |
17572-17573 |
-RRB- |
denotes |
) |
T3404 |
17573-17574 |
. |
denotes |
. |
T3405 |
17574-17920 |
sentence |
denotes |
However, unlike the in vivo TTD phenotypes described above, in which XpdTTD/TTD and XpdTTD/KO animals were indistinguishable, XpdTTD dosage effects were observed in UV survival, UV-UDS, and UV-RRS, indicating that cellular parameters as measured in fibroblasts here do not always correlate with the phenotype at the level of the intact organism. |
T3406 |
17575-17582 |
RB |
denotes |
However |
T3407 |
17728-17736 |
VBN |
denotes |
observed |
T3408 |
17582-17584 |
, |
denotes |
, |
T3409 |
17584-17590 |
IN |
denotes |
unlike |
T3410 |
17591-17594 |
DT |
denotes |
the |
T3411 |
17607-17617 |
NNS |
denotes |
phenotypes |
T3412 |
17595-17597 |
FW |
denotes |
in |
T3413 |
17598-17602 |
FW |
denotes |
vivo |
T3414 |
17603-17606 |
NN |
denotes |
TTD |
T3415 |
17618-17627 |
VBN |
denotes |
described |
T3416 |
17628-17633 |
RB |
denotes |
above |
T3417 |
17633-17635 |
, |
denotes |
, |
T3418 |
17635-17637 |
IN |
denotes |
in |
T3419 |
17677-17681 |
VBD |
denotes |
were |
T3420 |
17638-17643 |
WDT |
denotes |
which |
T3421 |
17644-17650 |
NN |
denotes |
XpdTTD |
T3422 |
17651-17654 |
NN |
denotes |
TTD |
T3423 |
17650-17651 |
HYPH |
denotes |
/ |
T3424 |
17669-17676 |
NNS |
denotes |
animals |
T3425 |
17655-17658 |
CC |
denotes |
and |
T3426 |
17659-17665 |
NN |
denotes |
XpdTTD |
T3427 |
17666-17668 |
NN |
denotes |
KO |
T3428 |
17665-17666 |
HYPH |
denotes |
/ |
T3429 |
17682-17699 |
JJ |
denotes |
indistinguishable |
T3430 |
17699-17701 |
, |
denotes |
, |
T3431 |
17701-17707 |
NN |
denotes |
XpdTTD |
T3432 |
17715-17722 |
NNS |
denotes |
effects |
T3433 |
17708-17714 |
NN |
denotes |
dosage |
T3434 |
17723-17727 |
VBD |
denotes |
were |
T3435 |
17737-17739 |
IN |
denotes |
in |
T3436 |
17740-17742 |
NN |
denotes |
UV |
T3437 |
17743-17751 |
NN |
denotes |
survival |
T3438 |
17751-17753 |
, |
denotes |
, |
T3439 |
17753-17755 |
NN |
denotes |
UV |
T3440 |
17756-17759 |
NN |
denotes |
UDS |
T3441 |
17755-17756 |
HYPH |
denotes |
- |
T3442 |
17759-17761 |
, |
denotes |
, |
T3443 |
17761-17764 |
CC |
denotes |
and |
T3444 |
17765-17767 |
NN |
denotes |
UV |
T3445 |
17768-17771 |
NN |
denotes |
RRS |
T3446 |
17767-17768 |
HYPH |
denotes |
- |
T3447 |
17771-17773 |
, |
denotes |
, |
T3448 |
17773-17783 |
VBG |
denotes |
indicating |
T3449 |
17784-17788 |
IN |
denotes |
that |
T3450 |
17855-17864 |
VB |
denotes |
correlate |
T3451 |
17789-17797 |
JJ |
denotes |
cellular |
T3452 |
17798-17808 |
NNS |
denotes |
parameters |
T3453 |
17809-17811 |
IN |
denotes |
as |
T3454 |
17812-17820 |
VBN |
denotes |
measured |
T3455 |
17821-17823 |
IN |
denotes |
in |
T3456 |
17824-17835 |
NNS |
denotes |
fibroblasts |
T3457 |
17836-17840 |
RB |
denotes |
here |
T3458 |
17841-17843 |
VBP |
denotes |
do |
T3459 |
17844-17847 |
RB |
denotes |
not |
T3460 |
17848-17854 |
RB |
denotes |
always |
T3461 |
17865-17869 |
IN |
denotes |
with |
T3462 |
17870-17873 |
DT |
denotes |
the |
T3463 |
17874-17883 |
NN |
denotes |
phenotype |
T3464 |
17884-17886 |
IN |
denotes |
at |
T3465 |
17887-17890 |
DT |
denotes |
the |
T3466 |
17891-17896 |
NN |
denotes |
level |
T3467 |
17897-17899 |
IN |
denotes |
of |
T3468 |
17900-17903 |
DT |
denotes |
the |
T3469 |
17911-17919 |
NN |
denotes |
organism |
T3470 |
17904-17910 |
JJ |
denotes |
intact |
T3471 |
17919-17920 |
. |
denotes |
. |
T3472 |
17920-18043 |
sentence |
denotes |
XpdTTD/KO hemizygous cells were thus used as the baseline on which to compare the activity of compound heterozygous cells. |
T3473 |
17921-17927 |
NN |
denotes |
XpdTTD |
T3474 |
17928-17930 |
NN |
denotes |
KO |
T3475 |
17927-17928 |
HYPH |
denotes |
/ |
T3476 |
17942-17947 |
NNS |
denotes |
cells |
T3477 |
17931-17941 |
JJ |
denotes |
hemizygous |
T3478 |
17958-17962 |
VBN |
denotes |
used |
T3479 |
17948-17952 |
VBD |
denotes |
were |
T3480 |
17953-17957 |
RB |
denotes |
thus |
T3481 |
17963-17965 |
IN |
denotes |
as |
T3482 |
17966-17969 |
DT |
denotes |
the |
T3483 |
17970-17978 |
NN |
denotes |
baseline |
T3484 |
17979-17981 |
IN |
denotes |
on |
T3485 |
17991-17998 |
VB |
denotes |
compare |
T3486 |
17982-17987 |
WDT |
denotes |
which |
T3487 |
17988-17990 |
TO |
denotes |
to |
T3488 |
17999-18002 |
DT |
denotes |
the |
T3489 |
18003-18011 |
NN |
denotes |
activity |
T3490 |
18012-18014 |
IN |
denotes |
of |
T3491 |
18015-18023 |
NN |
denotes |
compound |
T3492 |
18037-18042 |
NNS |
denotes |
cells |
T3493 |
18024-18036 |
JJ |
denotes |
heterozygous |
T3494 |
18042-18043 |
. |
denotes |
. |
T3495 |
18043-18250 |
sentence |
denotes |
Relative to XpdTTD/KO hemizygote cells, UV survival was improved by the homozygous lethal Xpd†XPCS allele in XpdTTD/†XPCS compound heterozygous cells and to a lesser degree by the Xpd†XP allele (Figure 4A). |
T3496 |
18044-18052 |
JJ |
denotes |
Relative |
T3497 |
18100-18108 |
VBN |
denotes |
improved |
T3498 |
18053-18055 |
IN |
denotes |
to |
T3499 |
18056-18062 |
NN |
denotes |
XpdTTD |
T3500 |
18063-18065 |
NN |
denotes |
KO |
T3501 |
18062-18063 |
HYPH |
denotes |
/ |
T3502 |
18077-18082 |
NNS |
denotes |
cells |
T3503 |
18066-18076 |
NN |
denotes |
hemizygote |
T3504 |
18082-18084 |
, |
denotes |
, |
T3505 |
18084-18086 |
NN |
denotes |
UV |
T3506 |
18087-18095 |
NN |
denotes |
survival |
T3507 |
18096-18099 |
VBD |
denotes |
was |
T3508 |
18109-18111 |
IN |
denotes |
by |
T3509 |
18112-18115 |
DT |
denotes |
the |
T3510 |
18143-18149 |
NN |
denotes |
allele |
T3511 |
18116-18126 |
JJ |
denotes |
homozygous |
T3512 |
18127-18133 |
JJ |
denotes |
lethal |
T3513 |
18134-18142 |
NN |
denotes |
Xpd†XPCS |
T3514 |
18150-18152 |
IN |
denotes |
in |
T3515 |
18153-18159 |
NN |
denotes |
XpdTTD |
T3516 |
18160-18165 |
NN |
denotes |
†XPCS |
T3517 |
18159-18160 |
HYPH |
denotes |
/ |
T3518 |
18188-18193 |
NNS |
denotes |
cells |
T3519 |
18166-18174 |
NN |
denotes |
compound |
T3520 |
18175-18187 |
JJ |
denotes |
heterozygous |
T3521 |
18194-18197 |
CC |
denotes |
and |
T3522 |
18198-18200 |
IN |
denotes |
to |
T3523 |
18217-18219 |
IN |
denotes |
by |
T3524 |
18201-18202 |
DT |
denotes |
a |
T3525 |
18210-18216 |
NN |
denotes |
degree |
T3526 |
18203-18209 |
JJR |
denotes |
lesser |
T3527 |
18220-18223 |
DT |
denotes |
the |
T3528 |
18231-18237 |
NN |
denotes |
allele |
T3529 |
18224-18230 |
NN |
denotes |
Xpd†XP |
T3530 |
18238-18239 |
-LRB- |
denotes |
( |
T3531 |
18246-18248 |
NN |
denotes |
4A |
T3532 |
18239-18245 |
NN |
denotes |
Figure |
T3533 |
18248-18249 |
-RRB- |
denotes |
) |
T3534 |
18249-18250 |
. |
denotes |
. |
T3535 |
18250-18390 |
sentence |
denotes |
Because of embryonic and cellular lethality, we were unable to test UV survival associated exclusively with the Xpd†XPCS or Xpd†XP alleles. |
T3536 |
18251-18258 |
IN |
denotes |
Because |
T3537 |
18299-18303 |
VBD |
denotes |
were |
T3538 |
18259-18261 |
IN |
denotes |
of |
T3539 |
18262-18271 |
JJ |
denotes |
embryonic |
T3540 |
18285-18294 |
NN |
denotes |
lethality |
T3541 |
18272-18275 |
CC |
denotes |
and |
T3542 |
18276-18284 |
JJ |
denotes |
cellular |
T3543 |
18294-18296 |
, |
denotes |
, |
T3544 |
18296-18298 |
PRP |
denotes |
we |
T3545 |
18304-18310 |
JJ |
denotes |
unable |
T3546 |
18311-18313 |
TO |
denotes |
to |
T3547 |
18314-18318 |
VB |
denotes |
test |
T3548 |
18319-18321 |
NN |
denotes |
UV |
T3549 |
18322-18330 |
NN |
denotes |
survival |
T3550 |
18331-18341 |
VBN |
denotes |
associated |
T3551 |
18342-18353 |
RB |
denotes |
exclusively |
T3552 |
18354-18358 |
IN |
denotes |
with |
T3553 |
18359-18362 |
DT |
denotes |
the |
T3554 |
18382-18389 |
NNS |
denotes |
alleles |
T3555 |
18363-18371 |
NN |
denotes |
Xpd†XPCS |
T3556 |
18372-18374 |
CC |
denotes |
or |
T3557 |
18375-18381 |
NN |
denotes |
Xpd†XP |
T3558 |
18389-18390 |
. |
denotes |
. |
T3559 |
18390-18632 |
sentence |
denotes |
However, homozygous XPDXP (XPDR683W) and hemizygous XPDXPCS (XPDG602D) human cells are known to be highly sensitive to UV [19,25], as are cells from a homozygous viable XpdXPCS/XPCS (XPDG602D/G602D) mouse model (Figure 4A, dotted line) [23]. |
T3560 |
18391-18398 |
RB |
denotes |
However |
T3561 |
18478-18483 |
VBN |
denotes |
known |
T3562 |
18398-18400 |
, |
denotes |
, |
T3563 |
18400-18410 |
JJ |
denotes |
homozygous |
T3564 |
18411-18416 |
NN |
denotes |
XPDXP |
T3565 |
18468-18473 |
NNS |
denotes |
cells |
T3566 |
18417-18418 |
-LRB- |
denotes |
( |
T3567 |
18418-18426 |
NN |
denotes |
XPDR683W |
T3568 |
18426-18427 |
-RRB- |
denotes |
) |
T3569 |
18428-18431 |
CC |
denotes |
and |
T3570 |
18432-18442 |
JJ |
denotes |
hemizygous |
T3571 |
18443-18450 |
NN |
denotes |
XPDXPCS |
T3572 |
18451-18452 |
-LRB- |
denotes |
( |
T3573 |
18452-18460 |
NN |
denotes |
XPDG602D |
T3574 |
18460-18461 |
-RRB- |
denotes |
) |
T3575 |
18462-18467 |
JJ |
denotes |
human |
T3576 |
18474-18477 |
VBP |
denotes |
are |
T3577 |
18484-18486 |
TO |
denotes |
to |
T3578 |
18487-18489 |
VB |
denotes |
be |
T3579 |
18490-18496 |
RB |
denotes |
highly |
T3580 |
18497-18506 |
JJ |
denotes |
sensitive |
T3581 |
18507-18509 |
IN |
denotes |
to |
T3582 |
18510-18512 |
NN |
denotes |
UV |
T3583 |
18513-18514 |
-LRB- |
denotes |
[ |
T3584 |
18517-18519 |
CD |
denotes |
25 |
T3585 |
18514-18516 |
CD |
denotes |
19 |
T3586 |
18516-18517 |
, |
denotes |
, |
T3587 |
18519-18520 |
-RRB- |
denotes |
] |
T3588 |
18520-18522 |
, |
denotes |
, |
T3589 |
18522-18524 |
IN |
denotes |
as |
T3590 |
18525-18528 |
VBP |
denotes |
are |
T3591 |
18529-18534 |
NNS |
denotes |
cells |
T3592 |
18535-18539 |
IN |
denotes |
from |
T3593 |
18540-18541 |
DT |
denotes |
a |
T3594 |
18596-18601 |
NN |
denotes |
model |
T3595 |
18542-18552 |
JJ |
denotes |
homozygous |
T3596 |
18553-18559 |
JJ |
denotes |
viable |
T3597 |
18560-18567 |
NN |
denotes |
XpdXPCS |
T3598 |
18568-18572 |
NN |
denotes |
XPCS |
T3599 |
18567-18568 |
HYPH |
denotes |
/ |
T3600 |
18573-18574 |
-LRB- |
denotes |
( |
T3601 |
18583-18588 |
NN |
denotes |
G602D |
T3602 |
18574-18582 |
NN |
denotes |
XPDG602D |
T3603 |
18582-18583 |
HYPH |
denotes |
/ |
T3604 |
18588-18589 |
-RRB- |
denotes |
) |
T3605 |
18590-18595 |
NN |
denotes |
mouse |
T3606 |
18602-18603 |
-LRB- |
denotes |
( |
T3607 |
18610-18612 |
NN |
denotes |
4A |
T3608 |
18603-18609 |
NN |
denotes |
Figure |
T3609 |
18612-18614 |
, |
denotes |
, |
T3610 |
18614-18620 |
VBN |
denotes |
dotted |
T3611 |
18621-18625 |
NN |
denotes |
line |
T3612 |
18625-18626 |
-RRB- |
denotes |
) |
T3613 |
18627-18628 |
-LRB- |
denotes |
[ |
T3614 |
18628-18630 |
CD |
denotes |
23 |
T3615 |
18630-18631 |
-RRB- |
denotes |
] |
T3616 |
18631-18632 |
. |
denotes |
. |
T3617 |
18632-18793 |
sentence |
denotes |
Thus, the survival of XpdTTD/†XPCS (and XpdTTD/†XP) cells likely represents a level of UV resistance that neither mutant allele can impart on its own (Table 2). |
T3618 |
18633-18637 |
RB |
denotes |
Thus |
T3619 |
18698-18708 |
VBZ |
denotes |
represents |
T3620 |
18637-18639 |
, |
denotes |
, |
T3621 |
18639-18642 |
DT |
denotes |
the |
T3622 |
18643-18651 |
NN |
denotes |
survival |
T3623 |
18652-18654 |
IN |
denotes |
of |
T3624 |
18655-18661 |
NN |
denotes |
XpdTTD |
T3625 |
18662-18667 |
NN |
denotes |
†XPCS |
T3626 |
18661-18662 |
HYPH |
denotes |
/ |
T3627 |
18685-18690 |
NNS |
denotes |
cells |
T3628 |
18668-18669 |
-LRB- |
denotes |
( |
T3629 |
18669-18672 |
CC |
denotes |
and |
T3630 |
18673-18679 |
NN |
denotes |
XpdTTD |
T3631 |
18680-18683 |
NN |
denotes |
†XP |
T3632 |
18679-18680 |
HYPH |
denotes |
/ |
T3633 |
18683-18684 |
-RRB- |
denotes |
) |
T3634 |
18691-18697 |
RB |
denotes |
likely |
T3635 |
18709-18710 |
DT |
denotes |
a |
T3636 |
18711-18716 |
NN |
denotes |
level |
T3637 |
18717-18719 |
IN |
denotes |
of |
T3638 |
18720-18722 |
NN |
denotes |
UV |
T3639 |
18723-18733 |
NN |
denotes |
resistance |
T3640 |
18734-18738 |
WDT |
denotes |
that |
T3641 |
18765-18771 |
VB |
denotes |
impart |
T3642 |
18739-18746 |
CC |
denotes |
neither |
T3643 |
18754-18760 |
NN |
denotes |
allele |
T3644 |
18747-18753 |
JJ |
denotes |
mutant |
T3645 |
18761-18764 |
MD |
denotes |
can |
T3646 |
18772-18774 |
IN |
denotes |
on |
T3647 |
18775-18778 |
PRP$ |
denotes |
its |
T3648 |
18779-18782 |
NN |
denotes |
own |
T3649 |
18783-18784 |
-LRB- |
denotes |
( |
T3650 |
18784-18789 |
NN |
denotes |
Table |
T3651 |
18790-18791 |
CD |
denotes |
2 |
T3652 |
18791-18792 |
-RRB- |
denotes |
) |
T3653 |
18792-18793 |
. |
denotes |
. |
T3654 |
18793-18951 |
sentence |
denotes |
Significant effects of compound heterozygosity on NER subpathways relative to XpdTTD/KO cells were observed in XpdTTD/†XP cells but only for UV-UDS activity. |
T3655 |
18794-18805 |
JJ |
denotes |
Significant |
T3656 |
18806-18813 |
NNS |
denotes |
effects |
T3657 |
18893-18901 |
VBN |
denotes |
observed |
T3658 |
18814-18816 |
IN |
denotes |
of |
T3659 |
18817-18825 |
NN |
denotes |
compound |
T3660 |
18826-18840 |
NN |
denotes |
heterozygosity |
T3661 |
18841-18843 |
IN |
denotes |
on |
T3662 |
18844-18847 |
NN |
denotes |
NER |
T3663 |
18848-18859 |
NNS |
denotes |
subpathways |
T3664 |
18860-18868 |
JJ |
denotes |
relative |
T3665 |
18869-18871 |
IN |
denotes |
to |
T3666 |
18872-18878 |
NN |
denotes |
XpdTTD |
T3667 |
18879-18881 |
NN |
denotes |
KO |
T3668 |
18878-18879 |
HYPH |
denotes |
/ |
T3669 |
18882-18887 |
NNS |
denotes |
cells |
T3670 |
18888-18892 |
VBD |
denotes |
were |
T3671 |
18902-18904 |
IN |
denotes |
in |
T3672 |
18905-18911 |
NN |
denotes |
XpdTTD |
T3673 |
18912-18915 |
NN |
denotes |
†XP |
T3674 |
18911-18912 |
HYPH |
denotes |
/ |
T3675 |
18916-18921 |
NNS |
denotes |
cells |
T3676 |
18922-18925 |
CC |
denotes |
but |
T3677 |
18926-18930 |
RB |
denotes |
only |
T3678 |
18931-18934 |
IN |
denotes |
for |
T3679 |
18935-18937 |
NN |
denotes |
UV |
T3680 |
18938-18941 |
NN |
denotes |
UDS |
T3681 |
18937-18938 |
HYPH |
denotes |
- |
T3682 |
18942-18950 |
NN |
denotes |
activity |
T3683 |
18950-18951 |
. |
denotes |
. |
T3684 |
18951-19200 |
sentence |
denotes |
Finally, none of the mutant TFIIH combinations (carrying alterations associated with TTD [XPDR722W], XPCS [XPDG602D], or XP [XPDR683W]) exhibited synergism in an in vitro NER reaction reconstituted with different mutant TFIIH complexes (Figure 4D). |
T3685 |
18952-18959 |
RB |
denotes |
Finally |
T3686 |
19088-19097 |
VBD |
denotes |
exhibited |
T3687 |
18959-18961 |
, |
denotes |
, |
T3688 |
18961-18965 |
NN |
denotes |
none |
T3689 |
18966-18968 |
IN |
denotes |
of |
T3690 |
18969-18972 |
DT |
denotes |
the |
T3691 |
18986-18998 |
NNS |
denotes |
combinations |
T3692 |
18973-18979 |
JJ |
denotes |
mutant |
T3693 |
18980-18985 |
NN |
denotes |
TFIIH |
T3694 |
18999-19000 |
-LRB- |
denotes |
( |
T3695 |
19000-19008 |
VBG |
denotes |
carrying |
T3696 |
19009-19020 |
NNS |
denotes |
alterations |
T3697 |
19021-19031 |
VBN |
denotes |
associated |
T3698 |
19032-19036 |
IN |
denotes |
with |
T3699 |
19037-19040 |
NN |
denotes |
TTD |
T3700 |
19041-19042 |
-LRB- |
denotes |
[ |
T3701 |
19042-19050 |
NN |
denotes |
XPDR722W |
T3702 |
19050-19051 |
-RRB- |
denotes |
] |
T3703 |
19051-19053 |
, |
denotes |
, |
T3704 |
19053-19057 |
NN |
denotes |
XPCS |
T3705 |
19058-19059 |
-LRB- |
denotes |
[ |
T3706 |
19059-19067 |
NN |
denotes |
XPDG602D |
T3707 |
19067-19068 |
-RRB- |
denotes |
] |
T3708 |
19068-19070 |
, |
denotes |
, |
T3709 |
19070-19072 |
CC |
denotes |
or |
T3710 |
19073-19075 |
NN |
denotes |
XP |
T3711 |
19076-19077 |
-LRB- |
denotes |
[ |
T3712 |
19077-19085 |
NN |
denotes |
XPDR683W |
T3713 |
19085-19086 |
-RRB- |
denotes |
] |
T3714 |
19086-19087 |
-RRB- |
denotes |
) |
T3715 |
19098-19107 |
NN |
denotes |
synergism |
T3716 |
19108-19110 |
IN |
denotes |
in |
T3717 |
19111-19113 |
DT |
denotes |
an |
T3718 |
19127-19135 |
NN |
denotes |
reaction |
T3719 |
19114-19116 |
FW |
denotes |
in |
T3720 |
19117-19122 |
FW |
denotes |
vitro |
T3721 |
19123-19126 |
NN |
denotes |
NER |
T3722 |
19136-19149 |
VBN |
denotes |
reconstituted |
T3723 |
19150-19154 |
IN |
denotes |
with |
T3724 |
19155-19164 |
JJ |
denotes |
different |
T3725 |
19178-19187 |
NNS |
denotes |
complexes |
T3726 |
19165-19171 |
JJ |
denotes |
mutant |
T3727 |
19172-19177 |
NN |
denotes |
TFIIH |
T3728 |
19188-19189 |
-LRB- |
denotes |
( |
T3729 |
19196-19198 |
NN |
denotes |
4D |
T3730 |
19189-19195 |
NN |
denotes |
Figure |
T3731 |
19198-19199 |
-RRB- |
denotes |
) |
T3732 |
19199-19200 |
. |
denotes |
. |
T3733 |
19200-19435 |
sentence |
denotes |
Taken together, these data are consistent with interallelic complementation of UV sensitivity in cells but underscore the lack of any correlation between UV-related repair characteristics and TTD progeroid phenotypes in animal models. |
T3734 |
19201-19206 |
VBN |
denotes |
Taken |
T3735 |
19228-19231 |
VBP |
denotes |
are |
T3872 |
22603-22611 |
NNS |
denotes |
patients |
T3873 |
22612-22616 |
IN |
denotes |
with |
T3874 |
22617-22620 |
NN |
denotes |
TTD |
T3875 |
22621-22629 |
VBN |
denotes |
compared |
T3876 |
22630-22634 |
IN |
denotes |
with |
T3877 |
22635-22637 |
NN |
denotes |
wt |
T3878 |
22638-22646 |
NNS |
denotes |
controls |
T3879 |
22647-22650 |
IN |
denotes |
due |
T3880 |
22651-22653 |
IN |
denotes |
to |
T3881 |
22654-22661 |
VBN |
denotes |
reduced |
T3882 |
22662-22671 |
NN |
denotes |
stability |
T3883 |
22672-22673 |
-LRB- |
denotes |
[ |
T3884 |
22676-22678 |
CD |
denotes |
17 |
T3885 |
22673-22675 |
CD |
denotes |
16 |
T3886 |
22675-22676 |
, |
denotes |
, |
T3887 |
22678-22679 |
-RRB- |
denotes |
] |
T3888 |
22679-22680 |
. |
denotes |
. |
T3889 |
22680-22934 |
sentence |
denotes |
Despite overexpression of mRNA from the XpdTTD allele relative to the wt allele (Figure 1E), TFIIH protein levels were reduced by 50% in primary mouse XpdTTD/TTD fibroblasts (Figure 4E and 4F), thereby mimicking the situation in human patients with TTD. |
T3890 |
22681-22688 |
IN |
denotes |
Despite |
T3891 |
22800-22807 |
VBN |
denotes |
reduced |
T3892 |
22689-22703 |
NN |
denotes |
overexpression |
T3893 |
22704-22706 |
IN |
denotes |
of |
T3894 |
22707-22711 |
NN |
denotes |
mRNA |
T3895 |
22712-22716 |
IN |
denotes |
from |
T3896 |
22717-22720 |
DT |
denotes |
the |
T3897 |
22728-22734 |
NN |
denotes |
allele |
T3898 |
22721-22727 |
NN |
denotes |
XpdTTD |
T3899 |
22735-22743 |
JJ |
denotes |
relative |
T3900 |
22744-22746 |
IN |
denotes |
to |
T3901 |
22747-22750 |
DT |
denotes |
the |
T3902 |
22754-22760 |
NN |
denotes |
allele |
T3903 |
22751-22753 |
NN |
denotes |
wt |
T3904 |
22761-22762 |
-LRB- |
denotes |
( |
T3905 |
22769-22771 |
NN |
denotes |
1E |
T3906 |
22762-22768 |
NN |
denotes |
Figure |
T3907 |
22771-22772 |
-RRB- |
denotes |
) |
T3908 |
22772-22774 |
, |
denotes |
, |
T3909 |
22774-22779 |
NN |
denotes |
TFIIH |
T3910 |
22788-22794 |
NNS |
denotes |
levels |
T3911 |
22780-22787 |
NN |
denotes |
protein |
T3912 |
22795-22799 |
VBD |
denotes |
were |
T3913 |
22808-22810 |
IN |
denotes |
by |
T3914 |
22811-22813 |
CD |
denotes |
50 |
T3915 |
22813-22814 |
NN |
denotes |
% |
T3916 |
22815-22817 |
IN |
denotes |
in |
T3917 |
22818-22825 |
JJ |
denotes |
primary |
T3918 |
22843-22854 |
NNS |
denotes |
fibroblasts |
T3919 |
22826-22831 |
NN |
denotes |
mouse |
T3920 |
22832-22838 |
NN |
denotes |
XpdTTD |
T3921 |
22839-22842 |
NN |
denotes |
TTD |
T3922 |
22838-22839 |
HYPH |
denotes |
/ |
T3923 |
22855-22856 |
-LRB- |
denotes |
( |
T3924 |
22863-22865 |
NN |
denotes |
4E |
T3925 |
22856-22862 |
NN |
denotes |
Figure |
T3926 |
22866-22869 |
CC |
denotes |
and |
T3927 |
22870-22872 |
NN |
denotes |
4F |
T3928 |
22872-22873 |
-RRB- |
denotes |
) |
T3929 |
22873-22875 |
, |
denotes |
, |
T3930 |
22875-22882 |
RB |
denotes |
thereby |
T3931 |
22883-22892 |
VBG |
denotes |
mimicking |
T3932 |
22893-22896 |
DT |
denotes |
the |
T3933 |
22897-22906 |
NN |
denotes |
situation |
T3934 |
22907-22909 |
IN |
denotes |
in |
T3935 |
22910-22915 |
JJ |
denotes |
human |
T3936 |
22916-22924 |
NNS |
denotes |
patients |
T3937 |
22925-22929 |
IN |
denotes |
with |
T3938 |
22930-22933 |
NN |
denotes |
TTD |
T3939 |
22933-22934 |
. |
denotes |
. |
T3940 |
22934-23063 |
sentence |
denotes |
In accordance with the gene dosage, a further reduction of up to 70% of the wt level was observed in hemizygous XpdTTD/KO cells. |
T3941 |
22935-22937 |
IN |
denotes |
In |
T3942 |
23024-23032 |
VBN |
denotes |
observed |
T3943 |
22938-22948 |
NN |
denotes |
accordance |
T3944 |
22949-22953 |
IN |
denotes |
with |
T3945 |
22954-22957 |
DT |
denotes |
the |
T3946 |
22963-22969 |
NN |
denotes |
dosage |
T3947 |
22958-22962 |
NN |
denotes |
gene |
T3948 |
22969-22971 |
, |
denotes |
, |
T3949 |
22971-22972 |
DT |
denotes |
a |
T3950 |
22981-22990 |
NN |
denotes |
reduction |
T3951 |
22973-22980 |
JJ |
denotes |
further |
T3952 |
22991-22993 |
IN |
denotes |
of |
T3953 |
22994-22996 |
IN |
denotes |
up |
T3954 |
23000-23002 |
CD |
denotes |
70 |
T3955 |
22997-22999 |
IN |
denotes |
to |
T3956 |
23002-23003 |
NN |
denotes |
% |
T3957 |
23004-23006 |
IN |
denotes |
of |
T3958 |
23007-23010 |
DT |
denotes |
the |
T3959 |
23014-23019 |
NN |
denotes |
level |
T3960 |
23011-23013 |
NN |
denotes |
wt |
T3961 |
23020-23023 |
VBD |
denotes |
was |
T3962 |
23033-23035 |
IN |
denotes |
in |
T3963 |
23036-23046 |
JJ |
denotes |
hemizygous |
T3964 |
23057-23062 |
NNS |
denotes |
cells |
T3965 |
23047-23053 |
NN |
denotes |
XpdTTD |
T3966 |
23054-23056 |
NN |
denotes |
KO |
T3967 |
23053-23054 |
HYPH |
denotes |
/ |
T3968 |
23062-23063 |
. |
denotes |
. |
T3969 |
23063-23257 |
sentence |
denotes |
Consistent with low mRNA expression levels, neither the Xpd†XPCS nor the Xpd†XP allele was able to restore TFIIH abundance to wt levels in XpdTTD compound heterozygote cells (Figure 4E and 4F). |
T3970 |
23064-23074 |
JJ |
denotes |
Consistent |
T3971 |
23151-23154 |
VBD |
denotes |
was |
T3972 |
23075-23079 |
IN |
denotes |
with |
T3973 |
23080-23083 |
JJ |
denotes |
low |
T3974 |
23100-23106 |
NNS |
denotes |
levels |
T3975 |
23084-23088 |
NN |
denotes |
mRNA |
T3976 |
23089-23099 |
NN |
denotes |
expression |
T3977 |
23106-23108 |
, |
denotes |
, |
T3978 |
23108-23115 |
CC |
denotes |
neither |
T3979 |
23144-23150 |
NN |
denotes |
allele |
T3980 |
23116-23119 |
DT |
denotes |
the |
T3981 |
23120-23128 |
NN |
denotes |
Xpd†XPCS |
T3982 |
23129-23132 |
CC |
denotes |
nor |
T3983 |
23133-23136 |
DT |
denotes |
the |
T3984 |
23137-23143 |
NN |
denotes |
Xpd†XP |
T3985 |
23155-23159 |
JJ |
denotes |
able |
T3986 |
23160-23162 |
TO |
denotes |
to |
T3987 |
23163-23170 |
VB |
denotes |
restore |
T3988 |
23171-23176 |
NN |
denotes |
TFIIH |
T3989 |
23177-23186 |
NN |
denotes |
abundance |
T3990 |
23187-23189 |
IN |
denotes |
to |
T3991 |
23190-23192 |
NN |
denotes |
wt |
T3992 |
23193-23199 |
NNS |
denotes |
levels |
T3993 |
23200-23202 |
IN |
denotes |
in |
T3994 |
23203-23209 |
NN |
denotes |
XpdTTD |
T3995 |
23232-23237 |
NNS |
denotes |
cells |
T3996 |
23210-23218 |
NN |
denotes |
compound |
T3997 |
23219-23231 |
NN |
denotes |
heterozygote |
T3998 |
23238-23239 |
-LRB- |
denotes |
( |
T3999 |
23246-23248 |
NN |
denotes |
4E |
T4000 |
23239-23245 |
NN |
denotes |
Figure |
T4001 |
23249-23252 |
CC |
denotes |
and |
T4002 |
23253-23255 |
NN |
denotes |
4F |
T4003 |
23255-23256 |
-RRB- |
denotes |
) |
T4004 |
23256-23257 |
. |
denotes |
. |
T4005 |
23257-23534 |
sentence |
denotes |
Thus, the improved UV survival observed in compound heterozygote cells (Figure 4A) and likely the rescue of TTD progeroid symptoms (Figure 3) were not due to normalisation of TFIIH levels, suggesting a qualitative rather than a quantitative effect on these phenotypes in vivo. |
T4006 |
23258-23262 |
RB |
denotes |
Thus |
T4007 |
23400-23404 |
VBD |
denotes |
were |
T4008 |
23262-23264 |
, |
denotes |
, |
T4009 |
23264-23267 |
DT |
denotes |
the |
T4010 |
23280-23288 |
NN |
denotes |
survival |
T4011 |
23268-23276 |
VBN |
denotes |
improved |
T4012 |
23277-23279 |
NN |
denotes |
UV |
T4013 |
23289-23297 |
VBN |
denotes |
observed |
T4014 |
23298-23300 |
IN |
denotes |
in |
T4015 |
23301-23309 |
NN |
denotes |
compound |
T4016 |
23323-23328 |
NNS |
denotes |
cells |
T4017 |
23310-23322 |
NN |
denotes |
heterozygote |
T4018 |
23329-23330 |
-LRB- |
denotes |
( |
T4019 |
23337-23339 |
NN |
denotes |
4A |
T4020 |
23330-23336 |
NN |
denotes |
Figure |
T4021 |
23339-23340 |
-RRB- |
denotes |
) |
T4022 |
23341-23344 |
CC |
denotes |
and |
T4023 |
23345-23351 |
RB |
denotes |
likely |
T4024 |
23356-23362 |
NN |
denotes |
rescue |
T4025 |
23352-23355 |
DT |
denotes |
the |
T4026 |
23363-23365 |
IN |
denotes |
of |
T4027 |
23366-23369 |
NN |
denotes |
TTD |
T4028 |
23380-23388 |
NNS |
denotes |
symptoms |
T4029 |
23370-23379 |
NN |
denotes |
progeroid |
T4030 |
23389-23390 |
-LRB- |
denotes |
( |
T4031 |
23390-23396 |
NN |
denotes |
Figure |
T4032 |
23397-23398 |
CD |
denotes |
3 |
T4033 |
23398-23399 |
-RRB- |
denotes |
) |
T4034 |
23405-23408 |
RB |
denotes |
not |
T4035 |
23409-23412 |
IN |
denotes |
due |
T4036 |
23413-23415 |
IN |
denotes |
to |
T4037 |
23416-23429 |
NN |
denotes |
normalisation |
T4038 |
23430-23432 |
IN |
denotes |
of |
T4039 |
23433-23438 |
NN |
denotes |
TFIIH |
T4040 |
23439-23445 |
NNS |
denotes |
levels |
T4041 |
23445-23447 |
, |
denotes |
, |
T4042 |
23447-23457 |
VBG |
denotes |
suggesting |
T4043 |
23458-23459 |
DT |
denotes |
a |
T4044 |
23460-23471 |
JJ |
denotes |
qualitative |
T4045 |
23499-23505 |
NN |
denotes |
effect |
T4046 |
23472-23478 |
RB |
denotes |
rather |
T4047 |
23479-23483 |
IN |
denotes |
than |
T4048 |
23484-23485 |
DT |
denotes |
a |
T4049 |
23486-23498 |
JJ |
denotes |
quantitative |
T4050 |
23506-23508 |
IN |
denotes |
on |
T4051 |
23509-23514 |
DT |
denotes |
these |
T4052 |
23515-23525 |
NNS |
denotes |
phenotypes |
T4053 |
23526-23528 |
FW |
denotes |
in |
T4054 |
23529-23533 |
FW |
denotes |
vivo |
T4055 |
23533-23534 |
. |
denotes |
. |
T4056 |
23534-23683 |
sentence |
denotes |
In contrast, the level of XPCS mRNA expression did affect the ability of the encoded protein (XPDG602D) to restore the TTD hair phenotype to normal. |
T4057 |
23535-23537 |
IN |
denotes |
In |
T4058 |
23586-23592 |
VB |
denotes |
affect |
T4059 |
23538-23546 |
NN |
denotes |
contrast |
T4060 |
23546-23548 |
, |
denotes |
, |
T4061 |
23548-23551 |
DT |
denotes |
the |
T4062 |
23552-23557 |
NN |
denotes |
level |
T4063 |
23558-23560 |
IN |
denotes |
of |
T4064 |
23561-23565 |
NN |
denotes |
XPCS |
T4065 |
23571-23581 |
NN |
denotes |
expression |
T4066 |
23566-23570 |
NN |
denotes |
mRNA |
T4067 |
23582-23585 |
VBD |
denotes |
did |
T4068 |
23593-23596 |
DT |
denotes |
the |
T4069 |
23597-23604 |
NN |
denotes |
ability |
T4070 |
23605-23607 |
IN |
denotes |
of |
T4071 |
23608-23611 |
DT |
denotes |
the |
T4072 |
23620-23627 |
NN |
denotes |
protein |
T4073 |
23612-23619 |
VBN |
denotes |
encoded |
T4074 |
23628-23629 |
-LRB- |
denotes |
( |
T4075 |
23629-23637 |
NN |
denotes |
XPDG602D |
T4076 |
23637-23638 |
-RRB- |
denotes |
) |
T4077 |
23639-23641 |
TO |
denotes |
to |
T4078 |
23642-23649 |
VB |
denotes |
restore |
T4079 |
23650-23653 |
DT |
denotes |
the |
T4080 |
23663-23672 |
NN |
denotes |
phenotype |
T4081 |
23654-23657 |
NN |
denotes |
TTD |
T4082 |
23658-23662 |
NN |
denotes |
hair |
T4083 |
23673-23675 |
IN |
denotes |
to |
T4086 |
23683-23946 |
sentence |
denotes |
Notably, XpdTTD/ †XPCS animals had a partial TTD hair phenotype, correlating with low levels of Xpd†XPCS expression, whereas XpdTTD/XPCS animals had wt hair, correlating with normal expression levels from the viable XpdXPCS allele (Table 2 and unpublished data). |
T4087 |
23684-23691 |
RB |
denotes |
Notably |
T4088 |
23715-23718 |
VBD |
denotes |
had |
T4089 |
23691-23693 |
, |
denotes |
, |
T4090 |
23693-23699 |
NN |
denotes |
XpdTTD |
T4091 |
23700-23706 |
NN |
denotes |
†XPCS |
T4092 |
23699-23700 |
HYPH |
denotes |
/ |
T4093 |
23707-23714 |
NNS |
denotes |
animals |
T4094 |
23719-23720 |
DT |
denotes |
a |
T4095 |
23738-23747 |
NN |
denotes |
phenotype |
T4096 |
23721-23728 |
JJ |
denotes |
partial |
T4097 |
23729-23732 |
NN |
denotes |
TTD |
T4098 |
23733-23737 |
NN |
denotes |
hair |
T4099 |
23747-23749 |
, |
denotes |
, |
T4100 |
23749-23760 |
VBG |
denotes |
correlating |
T4101 |
23761-23765 |
IN |
denotes |
with |
T4102 |
23766-23769 |
JJ |
denotes |
low |
T4103 |
23770-23776 |
NNS |
denotes |
levels |
T4104 |
23777-23779 |
IN |
denotes |
of |
T4105 |
23780-23788 |
NN |
denotes |
Xpd†XPCS |
T4106 |
23789-23799 |
NN |
denotes |
expression |
T4107 |
23799-23801 |
, |
denotes |
, |
T4108 |
23801-23808 |
IN |
denotes |
whereas |
T4109 |
23829-23832 |
VBD |
denotes |
had |
T4110 |
23809-23815 |
NN |
denotes |
XpdTTD |
T4111 |
23816-23820 |
NN |
denotes |
XPCS |
T4112 |
23815-23816 |
HYPH |
denotes |
/ |
T4113 |
23821-23828 |
NNS |
denotes |
animals |
T4114 |
23833-23835 |
NN |
denotes |
wt |
T4115 |
23836-23840 |
NN |
denotes |
hair |
T4116 |
23840-23842 |
, |
denotes |
, |
T4117 |
23842-23853 |
VBG |
denotes |
correlating |
T4118 |
23854-23858 |
IN |
denotes |
with |
T4119 |
23859-23865 |
JJ |
denotes |
normal |
T4120 |
23877-23883 |
NNS |
denotes |
levels |
T4121 |
23866-23876 |
NN |
denotes |
expression |
T4122 |
23884-23888 |
IN |
denotes |
from |
T4123 |
23889-23892 |
DT |
denotes |
the |
T4124 |
23908-23914 |
NN |
denotes |
allele |
T4125 |
23893-23899 |
JJ |
denotes |
viable |
T4126 |
23900-23907 |
NN |
denotes |
XpdXPCS |
T4127 |
23915-23916 |
-LRB- |
denotes |
( |
T4128 |
23916-23921 |
NN |
denotes |
Table |
T4129 |
23922-23923 |
CD |
denotes |
2 |
T4130 |
23924-23927 |
CC |
denotes |
and |
T4131 |
23928-23939 |
JJ |
denotes |
unpublished |
T4132 |
23940-23944 |
NNS |
denotes |
data |
T4133 |
23944-23945 |
-RRB- |
denotes |
) |
T4134 |
23945-23946 |
. |
denotes |
. |
T4135 |
23946-24074 |
sentence |
denotes |
Thus, the range of expression levels from these two mutant alleles affected their ability to complement some phenotypes (hair). |
T4136 |
23947-23951 |
RB |
denotes |
Thus |
T4137 |
24014-24022 |
VBD |
denotes |
affected |
T4138 |
23951-23953 |
, |
denotes |
, |
T4139 |
23953-23956 |
DT |
denotes |
the |
T4140 |
23957-23962 |
NN |
denotes |
range |
T4141 |
23963-23965 |
IN |
denotes |
of |
T4142 |
23966-23976 |
NN |
denotes |
expression |
T4143 |
23977-23983 |
NNS |
denotes |
levels |
T4144 |
23984-23988 |
IN |
denotes |
from |
T4145 |
23989-23994 |
DT |
denotes |
these |
T4146 |
24006-24013 |
NNS |
denotes |
alleles |
T4147 |
23995-23998 |
CD |
denotes |
two |
T4148 |
23999-24005 |
JJ |
denotes |
mutant |
T4149 |
24023-24028 |
PRP$ |
denotes |
their |
T4150 |
24029-24036 |
NN |
denotes |
ability |
T4151 |
24037-24039 |
TO |
denotes |
to |
T4152 |
24040-24050 |
VB |
denotes |
complement |
T4153 |
24051-24055 |
DT |
denotes |
some |
T4154 |
24056-24066 |
NNS |
denotes |
phenotypes |
T4155 |
24067-24068 |
-LRB- |
denotes |
( |
T4156 |
24068-24072 |
NN |
denotes |
hair |
T4157 |
24072-24073 |
-RRB- |
denotes |
) |
T4158 |
24073-24074 |
. |
denotes |
. |
T4159 |
24074-24237 |
sentence |
denotes |
An overview of the functional relationships between Xpd alleles, phenotypes, and the presumed underlying TFIIH function in mice and cells is presented in Table 2. |
T4160 |
24075-24077 |
DT |
denotes |
An |
T4161 |
24078-24086 |
NN |
denotes |
overview |
T4162 |
24216-24225 |
VBN |
denotes |
presented |
T4163 |
24087-24089 |
IN |
denotes |
of |
T4164 |
24090-24093 |
DT |
denotes |
the |
T4165 |
24105-24118 |
NNS |
denotes |
relationships |
T4166 |
24094-24104 |
JJ |
denotes |
functional |
T4167 |
24119-24126 |
IN |
denotes |
between |
T4168 |
24127-24130 |
NN |
denotes |
Xpd |
T4169 |
24131-24138 |
NNS |
denotes |
alleles |
T4170 |
24138-24140 |
, |
denotes |
, |
T4171 |
24140-24150 |
NNS |
denotes |
phenotypes |
T4172 |
24150-24152 |
, |
denotes |
, |
T4173 |
24152-24155 |
CC |
denotes |
and |
T4174 |
24156-24159 |
DT |
denotes |
the |
T4175 |
24186-24194 |
NN |
denotes |
function |
T4176 |
24160-24168 |
VBN |
denotes |
presumed |
T4177 |
24169-24179 |
VBG |
denotes |
underlying |
T4178 |
24180-24185 |
NN |
denotes |
TFIIH |
T4179 |
24195-24197 |
IN |
denotes |
in |
T4180 |
24198-24202 |
NNS |
denotes |
mice |
T4181 |
24203-24206 |
CC |
denotes |
and |
T4182 |
24207-24212 |
NNS |
denotes |
cells |
T4183 |
24213-24215 |
VBZ |
denotes |
is |
T4184 |
24226-24228 |
IN |
denotes |
in |
T4185 |
24229-24234 |
NN |
denotes |
Table |
T4186 |
24235-24236 |
CD |
denotes |
2 |
T4187 |
24236-24237 |
. |
denotes |
. |
T4259 |
24251-24261 |
NN |
denotes |
Dissection |
T4260 |
24262-24264 |
IN |
denotes |
of |
T4261 |
24265-24274 |
JJ |
denotes |
Biallelic |
T4262 |
24275-24282 |
NNS |
denotes |
Effects |
T4263 |
24283-24287 |
IN |
denotes |
from |
T4264 |
24288-24293 |
JJ |
denotes |
other |
T4265 |
24294-24306 |
NNS |
denotes |
Determinants |
T4266 |
24307-24309 |
IN |
denotes |
of |
T4267 |
24310-24319 |
NN |
denotes |
Phenotype |
T4268 |
24319-24611 |
sentence |
denotes |
Although phenotypic consequences, referred to here as biallelic effects, resulting from two different mutant alleles in compound heterozygote patients have been postulated, such effects have historically been difficult to distinguish from the influence of environment and genetic background. |
T4269 |
24320-24328 |
IN |
denotes |
Although |
T4270 |
24481-24491 |
VBN |
denotes |
postulated |
T4271 |
24329-24339 |
JJ |
denotes |
phenotypic |
T4272 |
24340-24352 |
NNS |
denotes |
consequences |
T4273 |
24352-24354 |
, |
denotes |
, |
T4274 |
24354-24362 |
VBN |
denotes |
referred |
T4275 |
24363-24365 |
IN |
denotes |
to |
T4276 |
24366-24370 |
RB |
denotes |
here |
T4277 |
24371-24373 |
IN |
denotes |
as |
T4278 |
24374-24383 |
JJ |
denotes |
biallelic |
T4279 |
24384-24391 |
NNS |
denotes |
effects |
T4280 |
24391-24393 |
, |
denotes |
, |
T4281 |
24393-24402 |
VBG |
denotes |
resulting |
T4282 |
24403-24407 |
IN |
denotes |
from |
T4283 |
24408-24411 |
CD |
denotes |
two |
T4284 |
24429-24436 |
NNS |
denotes |
alleles |
T4285 |
24412-24421 |
JJ |
denotes |
different |
T4286 |
24422-24428 |
JJ |
denotes |
mutant |
T4287 |
24437-24439 |
IN |
denotes |
in |
T4288 |
24440-24448 |
NN |
denotes |
compound |
T4289 |
24462-24470 |
NNS |
denotes |
patients |
T4290 |
24449-24461 |
NN |
denotes |
heterozygote |
T4291 |
24471-24475 |
VBP |
denotes |
have |
T4292 |
24476-24480 |
VBN |
denotes |
been |
T4293 |
24524-24528 |
VBN |
denotes |
been |
T4294 |
24491-24493 |
, |
denotes |
, |
T4295 |
24493-24497 |
JJ |
denotes |
such |
T4296 |
24498-24505 |
NNS |
denotes |
effects |
T4297 |
24506-24510 |
VBP |
denotes |
have |
T4298 |
24511-24523 |
RB |
denotes |
historically |
T4299 |
24529-24538 |
JJ |
denotes |
difficult |
T4300 |
24539-24541 |
TO |
denotes |
to |
T4301 |
24542-24553 |
VB |
denotes |
distinguish |
T4302 |
24554-24558 |
IN |
denotes |
from |
T4303 |
24559-24562 |
DT |
denotes |
the |
T4304 |
24563-24572 |
NN |
denotes |
influence |
T4305 |
24573-24575 |
IN |
denotes |
of |
T4306 |
24576-24587 |
NN |
denotes |
environment |
T4307 |
24588-24591 |
CC |
denotes |
and |
T4308 |
24592-24599 |
JJ |
denotes |
genetic |
T4309 |
24600-24610 |
NN |
denotes |
background |
T4310 |
24610-24611 |
. |
denotes |
. |
T4311 |
24611-24816 |
sentence |
denotes |
We used a genetically defined mammalian model system under controlled environmental conditions to reveal phenotypic effects attributable specifically to combinations of differentially mutated Xpd alleles. |
T4312 |
24612-24614 |
PRP |
denotes |
We |
T4313 |
24615-24619 |
VBD |
denotes |
used |
T4314 |
24620-24621 |
DT |
denotes |
a |
T4315 |
24658-24664 |
NN |
denotes |
system |
T4316 |
24622-24633 |
RB |
denotes |
genetically |
T4317 |
24634-24641 |
VBN |
denotes |
defined |
T4318 |
24642-24651 |
JJ |
denotes |
mammalian |
T4319 |
24652-24657 |
NN |
denotes |
model |
T4320 |
24665-24670 |
IN |
denotes |
under |
T4321 |
24671-24681 |
JJ |
denotes |
controlled |
T4322 |
24696-24706 |
NNS |
denotes |
conditions |
T4323 |
24682-24695 |
JJ |
denotes |
environmental |
T4324 |
24707-24709 |
TO |
denotes |
to |
T4325 |
24710-24716 |
VB |
denotes |
reveal |
T4326 |
24717-24727 |
JJ |
denotes |
phenotypic |
T4327 |
24728-24735 |
NNS |
denotes |
effects |
T4328 |
24736-24748 |
JJ |
denotes |
attributable |
T4329 |
24749-24761 |
RB |
denotes |
specifically |
T4330 |
24762-24764 |
IN |
denotes |
to |
T4331 |
24765-24777 |
NNS |
denotes |
combinations |
T4332 |
24778-24780 |
IN |
denotes |
of |
T4333 |
24781-24795 |
RB |
denotes |
differentially |
T4334 |
24796-24803 |
VBN |
denotes |
mutated |
T4335 |
24808-24815 |
NNS |
denotes |
alleles |
T4336 |
24804-24807 |
NN |
denotes |
Xpd |
T4337 |
24815-24816 |
. |
denotes |
. |
T4338 |
24816-24876 |
sentence |
denotes |
The observed biallelic effects were of three general types. |
T4339 |
24817-24820 |
DT |
denotes |
The |
T4340 |
24840-24847 |
NNS |
denotes |
effects |
T4341 |
24821-24829 |
VBN |
denotes |
observed |
T4342 |
24830-24839 |
JJ |
denotes |
biallelic |
T4343 |
24848-24852 |
VBD |
denotes |
were |
T4344 |
24853-24855 |
IN |
denotes |
of |
T4345 |
24856-24861 |
CD |
denotes |
three |
T4346 |
24870-24875 |
NNS |
denotes |
types |
T4347 |
24862-24869 |
JJ |
denotes |
general |
T4348 |
24875-24876 |
. |
denotes |
. |
T4349 |
24876-25064 |
sentence |
denotes |
In the first, the allele associated in a homozygous state with a phenotype closer to wt singularly determined the phenotypic outcome, a phenomenon widely known in human recessive disease. |
T4350 |
24877-24879 |
IN |
denotes |
In |
T4351 |
24976-24986 |
VBN |
denotes |
determined |
T4352 |
24880-24883 |
DT |
denotes |
the |
T4353 |
24884-24889 |
JJ |
denotes |
first |
T4354 |
24889-24891 |
, |
denotes |
, |
T4355 |
24891-24894 |
DT |
denotes |
the |
T4356 |
24895-24901 |
NN |
denotes |
allele |
T4357 |
24902-24912 |
VBN |
denotes |
associated |
T4358 |
24913-24915 |
IN |
denotes |
in |
T4359 |
24916-24917 |
DT |
denotes |
a |
T4360 |
24929-24934 |
NN |
denotes |
state |
T4361 |
24918-24928 |
JJ |
denotes |
homozygous |
T4362 |
24935-24939 |
IN |
denotes |
with |
T4363 |
24940-24941 |
DT |
denotes |
a |
T4364 |
24942-24951 |
NN |
denotes |
phenotype |
T4365 |
24952-24958 |
RBR |
denotes |
closer |
T4366 |
24959-24961 |
IN |
denotes |
to |
T4367 |
24962-24964 |
NN |
denotes |
wt |
T4368 |
24965-24975 |
RB |
denotes |
singularly |
T4369 |
24987-24990 |
DT |
denotes |
the |
T4370 |
25002-25009 |
NN |
denotes |
outcome |
T4371 |
24991-25001 |
JJ |
denotes |
phenotypic |
T4372 |
25009-25011 |
, |
denotes |
, |
T4373 |
25011-25012 |
DT |
denotes |
a |
T4374 |
25013-25023 |
NN |
denotes |
phenomenon |
T4375 |
25024-25030 |
RB |
denotes |
widely |
T4376 |
25031-25036 |
VBN |
denotes |
known |
T4377 |
25037-25039 |
IN |
denotes |
in |
T4378 |
25040-25045 |
JJ |
denotes |
human |
T4379 |
25056-25063 |
NN |
denotes |
disease |
T4380 |
25046-25055 |
JJ |
denotes |
recessive |
T4381 |
25063-25064 |
. |
denotes |
. |
T4382 |
25064-25195 |
sentence |
denotes |
Because these Xpd alleles functioned at or near wt levels with respect to a particular function, we call these effects “dominant”. |
T4383 |
25065-25072 |
IN |
denotes |
Because |
T4384 |
25091-25101 |
VBD |
denotes |
functioned |
T4385 |
25073-25078 |
DT |
denotes |
these |
T4386 |
25083-25090 |
NNS |
denotes |
alleles |
T4387 |
25079-25082 |
NN |
denotes |
Xpd |
T4388 |
25165-25169 |
VBP |
denotes |
call |
T4389 |
25102-25104 |
IN |
denotes |
at |
T4390 |
25105-25107 |
CC |
denotes |
or |
T4391 |
25108-25112 |
IN |
denotes |
near |
T4392 |
25113-25115 |
NN |
denotes |
wt |
T4393 |
25116-25122 |
NNS |
denotes |
levels |
T4394 |
25123-25127 |
IN |
denotes |
with |
T4395 |
25128-25135 |
NN |
denotes |
respect |
T4396 |
25136-25138 |
IN |
denotes |
to |
T4397 |
25139-25140 |
DT |
denotes |
a |
T4398 |
25152-25160 |
NN |
denotes |
function |
T4399 |
25141-25151 |
JJ |
denotes |
particular |
T4400 |
25160-25162 |
, |
denotes |
, |
T4401 |
25162-25164 |
PRP |
denotes |
we |
T4402 |
25170-25175 |
DT |
denotes |
these |
T4403 |
25176-25183 |
NNS |
denotes |
effects |
T4404 |
25184-25185 |
`` |
denotes |
“ |
T4405 |
25185-25193 |
JJ |
denotes |
dominant |
T4406 |
25193-25194 |
'' |
denotes |
” |
T4407 |
25194-25195 |
. |
denotes |
. |
T4408 |
25195-25364 |
sentence |
denotes |
Such alleles can also be referred to as “separation of function” alleles, because they allow dissection of the roles of multifunctional proteins in specific phenotypes. |
T4409 |
25196-25200 |
JJ |
denotes |
Such |
T4410 |
25201-25208 |
NNS |
denotes |
alleles |
T4411 |
25221-25229 |
VBN |
denotes |
referred |
T4412 |
25209-25212 |
MD |
denotes |
can |
T4413 |
25213-25217 |
RB |
denotes |
also |
T4414 |
25218-25220 |
VB |
denotes |
be |
T4415 |
25230-25232 |
IN |
denotes |
to |
T4416 |
25233-25235 |
IN |
denotes |
as |
T4417 |
25236-25237 |
`` |
denotes |
“ |
T4418 |
25261-25268 |
NNS |
denotes |
alleles |
T4419 |
25237-25247 |
NN |
denotes |
separation |
T4420 |
25248-25250 |
IN |
denotes |
of |
T4421 |
25251-25259 |
NN |
denotes |
function |
T4422 |
25259-25260 |
'' |
denotes |
” |
T4423 |
25268-25270 |
, |
denotes |
, |
T4424 |
25270-25277 |
IN |
denotes |
because |
T4425 |
25283-25288 |
VBP |
denotes |
allow |
T4426 |
25278-25282 |
PRP |
denotes |
they |
T4427 |
25289-25299 |
NN |
denotes |
dissection |
T4428 |
25300-25302 |
IN |
denotes |
of |
T4429 |
25303-25306 |
DT |
denotes |
the |
T4430 |
25307-25312 |
NNS |
denotes |
roles |
T4431 |
25313-25315 |
IN |
denotes |
of |
T4432 |
25316-25331 |
JJ |
denotes |
multifunctional |
T4433 |
25332-25340 |
NN |
denotes |
proteins |
T4434 |
25341-25343 |
IN |
denotes |
in |
T4435 |
25344-25352 |
JJ |
denotes |
specific |
T4436 |
25353-25363 |
NNS |
denotes |
phenotypes |
T4437 |
25363-25364 |
. |
denotes |
. |
T4438 |
25364-25741 |
sentence |
denotes |
Secondly, highlighting the potential relevance of current findings to all diploid organisms including humans was the observation that in one compound heterozygous animal, the Xpd allelic relationship could shift from A dominant |a recessive to A recessive |a dominant with respect to different phenotypes in a time-dependent and tissue-specific manner (see below and Table 2). |
T4439 |
25365-25373 |
RB |
denotes |
Secondly |
T4440 |
25474-25477 |
VBD |
denotes |
was |
T4441 |
25373-25375 |
, |
denotes |
, |
T4442 |
25375-25387 |
VBG |
denotes |
highlighting |
T4443 |
25388-25391 |
DT |
denotes |
the |
T4444 |
25402-25411 |
NN |
denotes |
relevance |
T4445 |
25392-25401 |
JJ |
denotes |
potential |
T4446 |
25412-25414 |
IN |
denotes |
of |
T4447 |
25415-25422 |
JJ |
denotes |
current |
T4448 |
25423-25431 |
NNS |
denotes |
findings |
T4449 |
25432-25434 |
IN |
denotes |
to |
T4450 |
25435-25438 |
DT |
denotes |
all |
T4451 |
25447-25456 |
NNS |
denotes |
organisms |
T4452 |
25439-25446 |
JJ |
denotes |
diploid |
T4453 |
25457-25466 |
VBG |
denotes |
including |
T4454 |
25467-25473 |
NNS |
denotes |
humans |
T4455 |
25478-25481 |
DT |
denotes |
the |
T4456 |
25482-25493 |
NN |
denotes |
observation |
T4457 |
25494-25498 |
IN |
denotes |
that |
T4458 |
25571-25576 |
VB |
denotes |
shift |
T4459 |
25499-25501 |
IN |
denotes |
in |
T4460 |
25502-25505 |
CD |
denotes |
one |
T4461 |
25528-25534 |
NN |
denotes |
animal |
T4462 |
25506-25514 |
NN |
denotes |
compound |
T4463 |
25515-25527 |
JJ |
denotes |
heterozygous |
T4464 |
25534-25536 |
, |
denotes |
, |
T4465 |
25536-25539 |
DT |
denotes |
the |
T4466 |
25552-25564 |
NN |
denotes |
relationship |
T4467 |
25540-25543 |
NN |
denotes |
Xpd |
T4468 |
25544-25551 |
JJ |
denotes |
allelic |
T4469 |
25565-25570 |
MD |
denotes |
could |
T4470 |
25577-25581 |
IN |
denotes |
from |
T4471 |
25582-25592 |
JJ |
denotes |
A dominant |
T4472 |
25594-25605 |
JJ |
denotes |
a recessive |
T4473 |
25593-25594 |
HYPH |
denotes |
| |
T4474 |
25606-25608 |
IN |
denotes |
to |
T4475 |
25609-25620 |
JJ |
denotes |
A recessive |
T4476 |
25622-25632 |
JJ |
denotes |
a dominant |
T4477 |
25621-25622 |
HYPH |
denotes |
| |
T4478 |
25633-25637 |
IN |
denotes |
with |
T4479 |
25638-25645 |
NN |
denotes |
respect |
T4480 |
25646-25648 |
IN |
denotes |
to |
T4481 |
25649-25658 |
JJ |
denotes |
different |
T4482 |
25659-25669 |
NNS |
denotes |
phenotypes |
T4483 |
25670-25672 |
IN |
denotes |
in |
T4484 |
25673-25674 |
DT |
denotes |
a |
T4485 |
25710-25716 |
NN |
denotes |
manner |
T4486 |
25675-25679 |
NN |
denotes |
time |
T4487 |
25680-25689 |
JJ |
denotes |
dependent |
T4488 |
25679-25680 |
HYPH |
denotes |
- |
T4489 |
25690-25693 |
CC |
denotes |
and |
T4490 |
25694-25700 |
NN |
denotes |
tissue |
T4491 |
25701-25709 |
JJ |
denotes |
specific |
T4492 |
25700-25701 |
HYPH |
denotes |
- |
T4493 |
25717-25718 |
-LRB- |
denotes |
( |
T4494 |
25718-25721 |
VB |
denotes |
see |
T4495 |
25722-25727 |
RB |
denotes |
below |
T4496 |
25732-25737 |
NN |
denotes |
Table |
T4497 |
25728-25731 |
CC |
denotes |
and |
T4498 |
25738-25739 |
CD |
denotes |
2 |
T4499 |
25739-25740 |
-RRB- |
denotes |
) |
T4500 |
25740-25741 |
. |
denotes |
. |
T4501 |
25741-25928 |
sentence |
denotes |
In the third type of biallelic effect, known as interallelic complementation, two mutant alleles produced a phenotype closer to wt than either could alone in a homo- or hemizygous state. |
T4502 |
25742-25744 |
IN |
denotes |
In |
T4503 |
25839-25847 |
VBD |
denotes |
produced |
T4504 |
25745-25748 |
DT |
denotes |
the |
T4505 |
25755-25759 |
NN |
denotes |
type |
T4506 |
25749-25754 |
JJ |
denotes |
third |
T4507 |
25760-25762 |
IN |
denotes |
of |
T4508 |
25763-25772 |
JJ |
denotes |
biallelic |
T4509 |
25773-25779 |
NN |
denotes |
effect |
T4510 |
25779-25781 |
, |
denotes |
, |
T4511 |
25781-25786 |
VBN |
denotes |
known |
T4512 |
25787-25789 |
IN |
denotes |
as |
T4513 |
25790-25802 |
JJ |
denotes |
interallelic |
T4514 |
25803-25818 |
NN |
denotes |
complementation |
T4515 |
25818-25820 |
, |
denotes |
, |
T4516 |
25820-25823 |
CD |
denotes |
two |
T4517 |
25831-25838 |
NNS |
denotes |
alleles |
T4518 |
25824-25830 |
JJ |
denotes |
mutant |
T4519 |
25848-25849 |
DT |
denotes |
a |
T4520 |
25850-25859 |
NN |
denotes |
phenotype |
T4521 |
25860-25866 |
RBR |
denotes |
closer |
T4522 |
25867-25869 |
IN |
denotes |
to |
T4523 |
25870-25872 |
NN |
denotes |
wt |
T4524 |
25873-25877 |
IN |
denotes |
than |
T4525 |
25891-25896 |
RB |
denotes |
alone |
T4526 |
25878-25884 |
DT |
denotes |
either |
T4527 |
25885-25890 |
MD |
denotes |
could |
T4528 |
25897-25899 |
IN |
denotes |
in |
T4529 |
25900-25901 |
DT |
denotes |
a |
T4530 |
25922-25927 |
NN |
denotes |
state |
T4531 |
25902-25906 |
AFX |
denotes |
homo |
T4532 |
25911-25921 |
JJ |
denotes |
hemizygous |
T4533 |
25906-25907 |
HYPH |
denotes |
- |
T4534 |
25908-25910 |
CC |
denotes |
or |
T4535 |
25927-25928 |
. |
denotes |
. |
T4536 |
25928-26103 |
sentence |
denotes |
As summarised in Table 2, examples of all types of biallelic effects were observed in a variety of Xpd-associated phenotypes, ranging from brittle hair to segmental progeria. |
T4537 |
25929-25931 |
IN |
denotes |
As |
T4538 |
25932-25942 |
VBN |
denotes |
summarised |
T4539 |
26003-26011 |
VBN |
denotes |
observed |
T4540 |
25943-25945 |
IN |
denotes |
in |
T4541 |
25946-25951 |
NN |
denotes |
Table |
T4542 |
25952-25953 |
CD |
denotes |
2 |
T4543 |
25953-25955 |
, |
denotes |
, |
T4544 |
25955-25963 |
NNS |
denotes |
examples |
T4545 |
25964-25966 |
IN |
denotes |
of |
T4546 |
25967-25970 |
DT |
denotes |
all |
T4547 |
25971-25976 |
NNS |
denotes |
types |
T4548 |
25977-25979 |
IN |
denotes |
of |
T4549 |
25980-25989 |
JJ |
denotes |
biallelic |
T4550 |
25990-25997 |
NNS |
denotes |
effects |
T4551 |
25998-26002 |
VBD |
denotes |
were |
T4552 |
26012-26014 |
IN |
denotes |
in |
T4553 |
26015-26016 |
DT |
denotes |
a |
T4554 |
26017-26024 |
NN |
denotes |
variety |
T4555 |
26025-26027 |
IN |
denotes |
of |
T4556 |
26028-26031 |
NN |
denotes |
Xpd |
T4557 |
26032-26042 |
VBN |
denotes |
associated |
T4558 |
26031-26032 |
HYPH |
denotes |
- |
T4559 |
26043-26053 |
NNS |
denotes |
phenotypes |
T4560 |
26053-26055 |
, |
denotes |
, |
T4561 |
26055-26062 |
VBG |
denotes |
ranging |
T4562 |
26063-26067 |
IN |
denotes |
from |
T4563 |
26068-26075 |
JJ |
denotes |
brittle |
T4564 |
26076-26080 |
NN |
denotes |
hair |
T4565 |
26081-26083 |
IN |
denotes |
to |
T4566 |
26084-26093 |
JJ |
denotes |
segmental |
T4567 |
26094-26102 |
NN |
denotes |
progeria |
T4568 |
26102-26103 |
. |
denotes |
. |
T4805 |
26105-26110 |
NN |
denotes |
TFIIH |
T4806 |
26111-26113 |
IN |
denotes |
in |
T4807 |
26114-26127 |
NN |
denotes |
Transcription |
T4808 |
26128-26131 |
CC |
denotes |
and |
T4809 |
26132-26138 |
NN |
denotes |
Repair |
T4810 |
26138-26140 |
: |
denotes |
: |
T4811 |
26140-26150 |
NNS |
denotes |
Mechanisms |
T4812 |
26151-26153 |
IN |
denotes |
of |
T4813 |
26154-26157 |
NN |
denotes |
XPD |
T4814 |
26166-26176 |
NN |
denotes |
Pleiotropy |
T4815 |
26158-26165 |
NN |
denotes |
Disease |
T4816 |
26176-26466 |
sentence |
denotes |
We observed differences in the ability of XpdTTD versus homozygous lethal Xpd†XPCS and Xpd†XP alleles to function in two transcription-related phenotypes separated in the organism by both time and space: embryonic lethality and terminal differentiation of enucleating skin and blood cells. |
T4817 |
26177-26179 |
PRP |
denotes |
We |
T4818 |
26180-26188 |
VBD |
denotes |
observed |
T4819 |
26189-26200 |
NNS |
denotes |
differences |
T4820 |
26201-26203 |
IN |
denotes |
in |
T4821 |
26204-26207 |
DT |
denotes |
the |
T4822 |
26208-26215 |
NN |
denotes |
ability |
T4823 |
26216-26218 |
IN |
denotes |
of |
T4824 |
26219-26225 |
NN |
denotes |
XpdTTD |
T4825 |
26226-26232 |
CC |
denotes |
versus |
T4826 |
26233-26243 |
JJ |
denotes |
homozygous |
T4827 |
26271-26278 |
NNS |
denotes |
alleles |
T4828 |
26244-26250 |
JJ |
denotes |
lethal |
T4829 |
26251-26259 |
NN |
denotes |
Xpd†XPCS |
T4830 |
26260-26263 |
CC |
denotes |
and |
T4831 |
26264-26270 |
NN |
denotes |
Xpd†XP |
T4832 |
26279-26281 |
TO |
denotes |
to |
T4833 |
26282-26290 |
VB |
denotes |
function |
T4834 |
26291-26293 |
IN |
denotes |
in |
T4835 |
26294-26297 |
CD |
denotes |
two |
T4836 |
26320-26330 |
NNS |
denotes |
phenotypes |
T4837 |
26298-26311 |
NN |
denotes |
transcription |
T4838 |
26312-26319 |
VBN |
denotes |
related |
T4839 |
26311-26312 |
HYPH |
denotes |
- |
T4840 |
26331-26340 |
VBN |
denotes |
separated |
T4841 |
26341-26343 |
IN |
denotes |
in |
T4842 |
26344-26347 |
DT |
denotes |
the |
T4843 |
26348-26356 |
NN |
denotes |
organism |
T4844 |
26357-26359 |
IN |
denotes |
by |
T4845 |
26360-26364 |
CC |
denotes |
both |
T4846 |
26365-26369 |
NN |
denotes |
time |
T4847 |
26370-26373 |
CC |
denotes |
and |
T4848 |
26374-26379 |
NN |
denotes |
space |
T4849 |
26379-26381 |
: |
denotes |
: |
T4850 |
26381-26390 |
JJ |
denotes |
embryonic |
T4851 |
26391-26400 |
NN |
denotes |
lethality |
T4852 |
26401-26404 |
CC |
denotes |
and |
T4853 |
26405-26413 |
JJ |
denotes |
terminal |
T4854 |
26414-26429 |
NN |
denotes |
differentiation |
T4855 |
26430-26432 |
IN |
denotes |
of |
T4856 |
26433-26444 |
VBG |
denotes |
enucleating |
T4857 |
26445-26449 |
NN |
denotes |
skin |
T4858 |
26450-26453 |
CC |
denotes |
and |
T4859 |
26454-26459 |
NN |
denotes |
blood |
T4860 |
26460-26465 |
NNS |
denotes |
cells |
T4861 |
26465-26466 |
. |
denotes |
. |
T4862 |
26466-26646 |
sentence |
denotes |
The preblastocyst-stage homozygous lethality shared by the XpdKO, Xpd†XPCS, and Xpd†XP alleles most likely reflects a defect in basal transcription that is incompatible with life. |
T4863 |
26467-26470 |
DT |
denotes |
The |
T4864 |
26502-26511 |
NN |
denotes |
lethality |
T4865 |
26471-26484 |
NN |
denotes |
preblastocyst |
T4866 |
26485-26490 |
NN |
denotes |
stage |
T4867 |
26484-26485 |
HYPH |
denotes |
- |
T4868 |
26491-26501 |
JJ |
denotes |
homozygous |
T4869 |
26574-26582 |
VBZ |
denotes |
reflects |
T4870 |
26512-26518 |
VBN |
denotes |
shared |
T4871 |
26519-26521 |
IN |
denotes |
by |
T4872 |
26522-26525 |
DT |
denotes |
the |
T4873 |
26554-26561 |
NNS |
denotes |
alleles |
T4874 |
26526-26531 |
NN |
denotes |
XpdKO |
T4875 |
26531-26533 |
, |
denotes |
, |
T4876 |
26533-26541 |
NN |
denotes |
Xpd†XPCS |
T4877 |
26541-26543 |
, |
denotes |
, |
T4878 |
26543-26546 |
CC |
denotes |
and |
T4879 |
26547-26553 |
NN |
denotes |
Xpd†XP |
T4880 |
26562-26566 |
RBS |
denotes |
most |
T4881 |
26567-26573 |
RB |
denotes |
likely |
T4882 |
26583-26584 |
DT |
denotes |
a |
T4883 |
26585-26591 |
NN |
denotes |
defect |
T4884 |
26592-26594 |
IN |
denotes |
in |
T4885 |
26595-26600 |
JJ |
denotes |
basal |
T4886 |
26601-26614 |
NN |
denotes |
transcription |
T4887 |
26615-26619 |
WDT |
denotes |
that |
T4888 |
26620-26622 |
VBZ |
denotes |
is |
T4889 |
26623-26635 |
JJ |
denotes |
incompatible |
T4890 |
26636-26640 |
IN |
denotes |
with |
T4891 |
26641-26645 |
NN |
denotes |
life |
T4892 |
26645-26646 |
. |
denotes |
. |
T4893 |
26646-26767 |
sentence |
denotes |
In XpdTTD/ †XPCS and XpdTTD/ †XP compound heterozygous mice, embryonic lethality was fully rescued by the XpdTTD allele. |
T4894 |
26647-26649 |
IN |
denotes |
In |
T4895 |
26738-26745 |
VBN |
denotes |
rescued |
T4896 |
26650-26656 |
NN |
denotes |
XpdTTD |
T4897 |
26657-26663 |
NN |
denotes |
†XPCS |
T4898 |
26656-26657 |
HYPH |
denotes |
/ |
T4899 |
26702-26706 |
NNS |
denotes |
mice |
T4900 |
26664-26667 |
CC |
denotes |
and |
T4901 |
26668-26674 |
NN |
denotes |
XpdTTD |
T4902 |
26675-26679 |
NN |
denotes |
†XP |
T4903 |
26674-26675 |
HYPH |
denotes |
/ |
T4904 |
26680-26688 |
NN |
denotes |
compound |
T4905 |
26689-26701 |
JJ |
denotes |
heterozygous |
T4906 |
26706-26708 |
, |
denotes |
, |
T4907 |
26708-26717 |
JJ |
denotes |
embryonic |
T4908 |
26718-26727 |
NN |
denotes |
lethality |
T4909 |
26728-26731 |
VBD |
denotes |
was |
T4910 |
26732-26737 |
RB |
denotes |
fully |
T4911 |
26746-26748 |
IN |
denotes |
by |
T4912 |
26749-26752 |
DT |
denotes |
the |
T4913 |
26760-26766 |
NN |
denotes |
allele |
T4914 |
26753-26759 |
NN |
denotes |
XpdTTD |
T4915 |
26766-26767 |
. |
denotes |
. |
T4916 |
26767-27032 |
sentence |
denotes |
Because embryonic lethality was also fully rescued in XpdTTD/KO hemizygous mice, the XpdTTD allele can be considered as wt and thus dominant to each of the homozygous lethal alleles (XpdKO, Xpd†XPCS, and Xpd†XP) with respect to this particular phenotype (Table 2). |
T4917 |
26768-26775 |
IN |
denotes |
Because |
T4918 |
26811-26818 |
VBN |
denotes |
rescued |
T4919 |
26776-26785 |
JJ |
denotes |
embryonic |
T4920 |
26786-26795 |
NN |
denotes |
lethality |
T4921 |
26796-26799 |
VBD |
denotes |
was |
T4922 |
26800-26804 |
RB |
denotes |
also |
T4923 |
26805-26810 |
RB |
denotes |
fully |
T4924 |
26874-26884 |
VBN |
denotes |
considered |
T4925 |
26819-26821 |
IN |
denotes |
in |
T4926 |
26822-26828 |
NN |
denotes |
XpdTTD |
T4927 |
26829-26831 |
NN |
denotes |
KO |
T4928 |
26828-26829 |
HYPH |
denotes |
/ |
T4929 |
26843-26847 |
NNS |
denotes |
mice |
T4930 |
26832-26842 |
JJ |
denotes |
hemizygous |
T4931 |
26847-26849 |
, |
denotes |
, |
T4932 |
26849-26852 |
DT |
denotes |
the |
T4933 |
26860-26866 |
NN |
denotes |
allele |
T4934 |
26853-26859 |
NN |
denotes |
XpdTTD |
T4935 |
26867-26870 |
MD |
denotes |
can |
T4936 |
26871-26873 |
VB |
denotes |
be |
T4937 |
26885-26887 |
IN |
denotes |
as |
T4938 |
26888-26890 |
NN |
denotes |
wt |
T4939 |
26891-26894 |
CC |
denotes |
and |
T4940 |
26895-26899 |
RB |
denotes |
thus |
T4941 |
26900-26908 |
JJ |
denotes |
dominant |
T4942 |
26909-26911 |
IN |
denotes |
to |
T4943 |
26912-26916 |
DT |
denotes |
each |
T4944 |
26917-26919 |
IN |
denotes |
of |
T4945 |
26920-26923 |
DT |
denotes |
the |
T4946 |
26942-26949 |
NNS |
denotes |
alleles |
T4947 |
26924-26934 |
JJ |
denotes |
homozygous |
T4948 |
26935-26941 |
JJ |
denotes |
lethal |
T4949 |
26950-26951 |
-LRB- |
denotes |
( |
T4950 |
26951-26956 |
NN |
denotes |
XpdKO |
T4951 |
26956-26958 |
, |
denotes |
, |
T4952 |
26958-26966 |
NN |
denotes |
Xpd†XPCS |
T4953 |
26966-26968 |
, |
denotes |
, |
T4954 |
26968-26971 |
CC |
denotes |
and |
T4955 |
26972-26978 |
NN |
denotes |
Xpd†XP |
T4956 |
26978-26979 |
-RRB- |
denotes |
) |
T4957 |
26980-26984 |
IN |
denotes |
with |
T4958 |
26985-26992 |
NN |
denotes |
respect |
T4959 |
26993-26995 |
IN |
denotes |
to |
T4960 |
26996-27000 |
DT |
denotes |
this |
T4961 |
27012-27021 |
NN |
denotes |
phenotype |
T4962 |
27001-27011 |
JJ |
denotes |
particular |
T4963 |
27022-27023 |
-LRB- |
denotes |
( |
T4964 |
27023-27028 |
NN |
denotes |
Table |
T4965 |
27029-27030 |
CD |
denotes |
2 |
T4966 |
27030-27031 |
-RRB- |
denotes |
) |
T4967 |
27031-27032 |
. |
denotes |
. |
T4968 |
27032-27292 |
sentence |
denotes |
TTD-specific cutaneous and anaemic features, on the other hand, are thought to result from a specific kind of transcriptional insufficiency caused by depletion of unstable TFIIH during the terminal differentiation of skin, hair-shaft, and blood cells [16,24]. |
T4969 |
27033-27036 |
NN |
denotes |
TTD |
T4970 |
27037-27045 |
JJ |
denotes |
specific |
T4971 |
27036-27037 |
HYPH |
denotes |
- |
T4972 |
27068-27076 |
NNS |
denotes |
features |
T4973 |
27046-27055 |
JJ |
denotes |
cutaneous |
T4974 |
27056-27059 |
CC |
denotes |
and |
T4975 |
27060-27067 |
JJ |
denotes |
anaemic |
T4976 |
27101-27108 |
VBN |
denotes |
thought |
T4977 |
27076-27078 |
, |
denotes |
, |
T4978 |
27078-27080 |
IN |
denotes |
on |
T4979 |
27081-27084 |
DT |
denotes |
the |
T4980 |
27091-27095 |
NN |
denotes |
hand |
T4981 |
27085-27090 |
JJ |
denotes |
other |
T4982 |
27095-27097 |
, |
denotes |
, |
T4983 |
27097-27100 |
VBP |
denotes |
are |
T4984 |
27109-27111 |
TO |
denotes |
to |
T4985 |
27112-27118 |
VB |
denotes |
result |
T4986 |
27119-27123 |
IN |
denotes |
from |
T4987 |
27124-27125 |
DT |
denotes |
a |
T4988 |
27135-27139 |
NN |
denotes |
kind |
T4989 |
27126-27134 |
JJ |
denotes |
specific |
T4990 |
27140-27142 |
IN |
denotes |
of |
T4991 |
27143-27158 |
JJ |
denotes |
transcriptional |
T4992 |
27159-27172 |
NN |
denotes |
insufficiency |
T4993 |
27173-27179 |
VBN |
denotes |
caused |
T4994 |
27180-27182 |
IN |
denotes |
by |
T4995 |
27183-27192 |
NN |
denotes |
depletion |
T4996 |
27193-27195 |
IN |
denotes |
of |
T4997 |
27196-27204 |
JJ |
denotes |
unstable |
T4998 |
27205-27210 |
NN |
denotes |
TFIIH |
T4999 |
27211-27217 |
IN |
denotes |
during |
T5000 |
27218-27221 |
DT |
denotes |
the |
T5001 |
27231-27246 |
NN |
denotes |
differentiation |
T5002 |
27222-27230 |
JJ |
denotes |
terminal |
T5003 |
27247-27249 |
IN |
denotes |
of |
T5004 |
27250-27254 |
NN |
denotes |
skin |
T5005 |
27278-27283 |
NNS |
denotes |
cells |
T5006 |
27254-27256 |
, |
denotes |
, |
T5007 |
27256-27260 |
NN |
denotes |
hair |
T5008 |
27261-27266 |
NN |
denotes |
shaft |
T5009 |
27260-27261 |
HYPH |
denotes |
- |
T5010 |
27266-27268 |
, |
denotes |
, |
T5011 |
27268-27271 |
CC |
denotes |
and |
T5012 |
27272-27277 |
NN |
denotes |
blood |
T5013 |
27284-27285 |
-LRB- |
denotes |
[ |
T5014 |
27288-27290 |
CD |
denotes |
24 |
T5015 |
27285-27287 |
CD |
denotes |
16 |
T5016 |
27287-27288 |
, |
denotes |
, |
T5017 |
27290-27291 |
-RRB- |
denotes |
] |
T5018 |
27291-27292 |
. |
denotes |
. |
T5019 |
27292-27537 |
sentence |
denotes |
In compound heterozygous mice, both homozygous lethal Xpd†XPCS and Xpd†XP alleles were able to alleviate XpdTTD-specific cutaneous and anaemic features and can thus be defined as dominant over the XpdTTD allele with respect to these phenotypes. |
T5020 |
27293-27295 |
IN |
denotes |
In |
T5021 |
27375-27379 |
VBD |
denotes |
were |
T5022 |
27296-27304 |
NN |
denotes |
compound |
T5023 |
27318-27322 |
NNS |
denotes |
mice |
T5024 |
27305-27317 |
JJ |
denotes |
heterozygous |
T5025 |
27322-27324 |
, |
denotes |
, |
T5026 |
27324-27328 |
DT |
denotes |
both |
T5027 |
27367-27374 |
NNS |
denotes |
alleles |
T5028 |
27329-27339 |
JJ |
denotes |
homozygous |
T5029 |
27340-27346 |
JJ |
denotes |
lethal |
T5030 |
27347-27355 |
NN |
denotes |
Xpd†XPCS |
T5031 |
27356-27359 |
CC |
denotes |
and |
T5032 |
27360-27366 |
NN |
denotes |
Xpd†XP |
T5033 |
27380-27384 |
JJ |
denotes |
able |
T5034 |
27385-27387 |
TO |
denotes |
to |
T5035 |
27388-27397 |
VB |
denotes |
alleviate |
T5036 |
27398-27404 |
NN |
denotes |
XpdTTD |
T5037 |
27405-27413 |
JJ |
denotes |
specific |
T5038 |
27404-27405 |
HYPH |
denotes |
- |
T5039 |
27436-27444 |
NNS |
denotes |
features |
T5040 |
27414-27423 |
JJ |
denotes |
cutaneous |
T5041 |
27424-27427 |
CC |
denotes |
and |
T5042 |
27428-27435 |
JJ |
denotes |
anaemic |
T5043 |
27445-27448 |
CC |
denotes |
and |
T5044 |
27449-27452 |
MD |
denotes |
can |
T5045 |
27461-27468 |
VBN |
denotes |
defined |
T5046 |
27453-27457 |
RB |
denotes |
thus |
T5047 |
27458-27460 |
VB |
denotes |
be |
T5048 |
27469-27471 |
IN |
denotes |
as |
T5049 |
27472-27480 |
JJ |
denotes |
dominant |
T5050 |
27481-27485 |
IN |
denotes |
over |
T5051 |
27486-27489 |
DT |
denotes |
the |
T5052 |
27497-27503 |
NN |
denotes |
allele |
T5053 |
27490-27496 |
NN |
denotes |
XpdTTD |
T5054 |
27504-27508 |
IN |
denotes |
with |
T5055 |
27509-27516 |
NN |
denotes |
respect |
T5056 |
27517-27519 |
IN |
denotes |
to |
T5057 |
27520-27525 |
DT |
denotes |
these |
T5058 |
27526-27536 |
NNS |
denotes |
phenotypes |
T5059 |
27536-27537 |
. |
denotes |
. |
T5060 |
27537-27754 |
sentence |
denotes |
We conclude that the defects leading to embryonic lethality and aberrant terminal differentiation of the skin, hair, and blood represent two qualitatively and/or quantitatively different transcriptional deficiencies. |
T5061 |
27538-27540 |
PRP |
denotes |
We |
T5062 |
27541-27549 |
VBP |
denotes |
conclude |
T5063 |
27550-27554 |
IN |
denotes |
that |
T5064 |
27665-27674 |
VBP |
denotes |
represent |
T5065 |
27555-27558 |
DT |
denotes |
the |
T5066 |
27559-27566 |
NNS |
denotes |
defects |
T5067 |
27567-27574 |
VBG |
denotes |
leading |
T5068 |
27575-27577 |
IN |
denotes |
to |
T5069 |
27578-27587 |
JJ |
denotes |
embryonic |
T5070 |
27588-27597 |
NN |
denotes |
lethality |
T5071 |
27598-27601 |
CC |
denotes |
and |
T5072 |
27602-27610 |
JJ |
denotes |
aberrant |
T5073 |
27620-27635 |
NN |
denotes |
differentiation |
T5074 |
27611-27619 |
JJ |
denotes |
terminal |
T5075 |
27636-27638 |
IN |
denotes |
of |
T5076 |
27639-27642 |
DT |
denotes |
the |
T5077 |
27643-27647 |
NN |
denotes |
skin |
T5078 |
27647-27649 |
, |
denotes |
, |
T5079 |
27649-27653 |
NN |
denotes |
hair |
T5080 |
27653-27655 |
, |
denotes |
, |
T5081 |
27655-27658 |
CC |
denotes |
and |
T5082 |
27659-27664 |
NN |
denotes |
blood |
T5083 |
27675-27678 |
CD |
denotes |
two |
T5084 |
27741-27753 |
NNS |
denotes |
deficiencies |
T5085 |
27679-27692 |
RB |
denotes |
qualitatively |
T5086 |
27715-27724 |
JJ |
denotes |
different |
T5087 |
27693-27696 |
CC |
denotes |
and |
T5088 |
27696-27697 |
HYPH |
denotes |
/ |
T5089 |
27697-27699 |
CC |
denotes |
or |
T5090 |
27700-27714 |
RB |
denotes |
quantitatively |
T5091 |
27725-27740 |
JJ |
denotes |
transcriptional |
T5092 |
27753-27754 |
. |
denotes |
. |
T5093 |
27754-27945 |
sentence |
denotes |
During early embryonic development, XpdTTD is dominant over the Xpd†XPCS and Xpd†XP alleles, whereas later in the ontogenesis of skin, hair-shaft, and blood cells, the situation is reversed. |
T5094 |
27755-27761 |
IN |
denotes |
During |
T5095 |
27798-27800 |
VBZ |
denotes |
is |
T5096 |
27762-27767 |
JJ |
denotes |
early |
T5097 |
27778-27789 |
NN |
denotes |
development |
T5098 |
27768-27777 |
JJ |
denotes |
embryonic |
T5099 |
27789-27791 |
, |
denotes |
, |
T5100 |
27791-27797 |
NN |
denotes |
XpdTTD |
T5101 |
27801-27809 |
JJ |
denotes |
dominant |
T5102 |
27810-27814 |
IN |
denotes |
over |
T5103 |
27815-27818 |
DT |
denotes |
the |
T5104 |
27839-27846 |
NNS |
denotes |
alleles |
T5105 |
27819-27827 |
NN |
denotes |
Xpd†XPCS |
T5106 |
27828-27831 |
CC |
denotes |
and |
T5107 |
27832-27838 |
NN |
denotes |
Xpd†XP |
T5108 |
27846-27848 |
, |
denotes |
, |
T5109 |
27848-27855 |
IN |
denotes |
whereas |
T5110 |
27936-27944 |
VBN |
denotes |
reversed |
T5111 |
27856-27861 |
RB |
denotes |
later |
T5112 |
27862-27864 |
IN |
denotes |
in |
T5113 |
27865-27868 |
DT |
denotes |
the |
T5114 |
27869-27880 |
NN |
denotes |
ontogenesis |
T5115 |
27881-27883 |
IN |
denotes |
of |
T5116 |
27884-27888 |
NN |
denotes |
skin |
T5117 |
27888-27890 |
, |
denotes |
, |
T5118 |
27890-27894 |
NN |
denotes |
hair |
T5119 |
27895-27900 |
NN |
denotes |
shaft |
T5120 |
27894-27895 |
HYPH |
denotes |
- |
T5121 |
27900-27902 |
, |
denotes |
, |
T5122 |
27902-27905 |
CC |
denotes |
and |
T5123 |
27906-27911 |
NN |
denotes |
blood |
T5124 |
27912-27917 |
NNS |
denotes |
cells |
T5125 |
27917-27919 |
, |
denotes |
, |
T5126 |
27919-27922 |
DT |
denotes |
the |
T5127 |
27923-27932 |
NN |
denotes |
situation |
T5128 |
27933-27935 |
VBZ |
denotes |
is |
T5129 |
27944-27945 |
. |
denotes |
. |
T5130 |
27945-28188 |
sentence |
denotes |
In its role in the repair of UV photolesions, the Xpd†XPCS allele imparted a clear UV survival benefit over a single XpdTTD allele or two XpdXPCS alleles independent of expression levels, which is consistent with interallelic complementation. |
T5131 |
27946-27948 |
IN |
denotes |
In |
T5132 |
28012-28020 |
VBD |
denotes |
imparted |
T5133 |
27949-27952 |
PRP$ |
denotes |
its |
T5134 |
27953-27957 |
NN |
denotes |
role |
T5135 |
27958-27960 |
IN |
denotes |
in |
T5136 |
27961-27964 |
DT |
denotes |
the |
T5137 |
27965-27971 |
NN |
denotes |
repair |
T5138 |
27972-27974 |
IN |
denotes |
of |
T5139 |
27975-27977 |
NN |
denotes |
UV |
T5140 |
27978-27990 |
NNS |
denotes |
photolesions |
T5141 |
27990-27992 |
, |
denotes |
, |
T5142 |
27992-27995 |
DT |
denotes |
the |
T5143 |
28005-28011 |
NN |
denotes |
allele |
T5144 |
27996-28004 |
NN |
denotes |
Xpd†XPCS |
T5145 |
28021-28022 |
DT |
denotes |
a |
T5146 |
28041-28048 |
NN |
denotes |
benefit |
T5147 |
28023-28028 |
JJ |
denotes |
clear |
T5148 |
28029-28031 |
NN |
denotes |
UV |
T5149 |
28032-28040 |
NN |
denotes |
survival |
T5150 |
28049-28053 |
IN |
denotes |
over |
T5151 |
28054-28055 |
DT |
denotes |
a |
T5152 |
28070-28076 |
NN |
denotes |
allele |
T5153 |
28056-28062 |
JJ |
denotes |
single |
T5154 |
28063-28069 |
NN |
denotes |
XpdTTD |
T5155 |
28077-28079 |
CC |
denotes |
or |
T5156 |
28080-28083 |
CD |
denotes |
two |
T5157 |
28092-28099 |
NNS |
denotes |
alleles |
T5158 |
28084-28091 |
NN |
denotes |
XpdXPCS |
T5159 |
28100-28111 |
JJ |
denotes |
independent |
T5160 |
28112-28114 |
IN |
denotes |
of |
T5161 |
28115-28125 |
NN |
denotes |
expression |
T5162 |
28126-28132 |
NNS |
denotes |
levels |
T5163 |
28132-28134 |
, |
denotes |
, |
T5164 |
28134-28139 |
WDT |
denotes |
which |
T5165 |
28140-28142 |
VBZ |
denotes |
is |
T5166 |
28143-28153 |
JJ |
denotes |
consistent |
T5167 |
28154-28158 |
IN |
denotes |
with |
T5168 |
28159-28171 |
JJ |
denotes |
interallelic |
T5169 |
28172-28187 |
NN |
denotes |
complementation |
T5170 |
28187-28188 |
. |
denotes |
. |
T5171 |
28188-28408 |
sentence |
denotes |
However, the observation that no other cellular or biochemical UV-related parameters were improved in XpdTTD/ †XPCS argues against complementation of this repair activity in the rescue of TTD progeroid symptoms in vivo. |
T5172 |
28189-28196 |
RB |
denotes |
However |
T5173 |
28305-28311 |
VBZ |
denotes |
argues |
T5174 |
28196-28198 |
, |
denotes |
, |
T5175 |
28198-28201 |
DT |
denotes |
the |
T5176 |
28202-28213 |
NN |
denotes |
observation |
T5177 |
28214-28218 |
IN |
denotes |
that |
T5178 |
28279-28287 |
VBN |
denotes |
improved |
T5179 |
28219-28221 |
DT |
denotes |
no |
T5180 |
28263-28273 |
NNS |
denotes |
parameters |
T5181 |
28222-28227 |
JJ |
denotes |
other |
T5182 |
28228-28236 |
JJ |
denotes |
cellular |
T5183 |
28237-28239 |
CC |
denotes |
or |
T5184 |
28240-28251 |
JJ |
denotes |
biochemical |
T5185 |
28252-28254 |
NN |
denotes |
UV |
T5186 |
28255-28262 |
VBN |
denotes |
related |
T5187 |
28254-28255 |
HYPH |
denotes |
- |
T5188 |
28274-28278 |
VBD |
denotes |
were |
T5189 |
28288-28290 |
IN |
denotes |
in |
T5190 |
28291-28297 |
NN |
denotes |
XpdTTD |
T5191 |
28298-28304 |
NN |
denotes |
†XPCS |
T5192 |
28297-28298 |
HYPH |
denotes |
/ |
T5193 |
28312-28319 |
IN |
denotes |
against |
T5194 |
28320-28335 |
NN |
denotes |
complementation |
T5195 |
28336-28338 |
IN |
denotes |
of |
T5196 |
28339-28343 |
DT |
denotes |
this |
T5197 |
28351-28359 |
NN |
denotes |
activity |
T5198 |
28344-28350 |
NN |
denotes |
repair |
T5199 |
28360-28362 |
IN |
denotes |
in |
T5200 |
28363-28366 |
DT |
denotes |
the |
T5201 |
28367-28373 |
NN |
denotes |
rescue |
T5202 |
28374-28376 |
IN |
denotes |
of |
T5203 |
28377-28380 |
NN |
denotes |
TTD |
T5204 |
28391-28399 |
NNS |
denotes |
symptoms |
T5205 |
28381-28390 |
JJ |
denotes |
progeroid |
T5206 |
28400-28402 |
FW |
denotes |
in |
T5207 |
28403-28407 |
FW |
denotes |
vivo |
T5208 |
28407-28408 |
. |
denotes |
. |
T5295 |
28410-28422 |
JJ |
denotes |
Interallelic |
T5296 |
28423-28438 |
NN |
denotes |
Complementation |
T5297 |
28439-28442 |
CC |
denotes |
and |
T5298 |
28443-28446 |
NN |
denotes |
XPD |
T5299 |
28447-28455 |
NN |
denotes |
Function |
T5300 |
28455-28539 |
sentence |
denotes |
What does interallelic complementation tell us about the mechanism of XPD function? |
T5301 |
28456-28460 |
WP |
denotes |
What |
T5302 |
28495-28499 |
VB |
denotes |
tell |
T5303 |
28461-28465 |
VBZ |
denotes |
does |
T5304 |
28466-28478 |
JJ |
denotes |
interallelic |
T5305 |
28479-28494 |
NN |
denotes |
complementation |
T5306 |
28500-28502 |
PRP |
denotes |
us |
T5307 |
28503-28508 |
IN |
denotes |
about |
T5308 |
28509-28512 |
DT |
denotes |
the |
T5309 |
28513-28522 |
NN |
denotes |
mechanism |
T5310 |
28523-28525 |
IN |
denotes |
of |
T5311 |
28526-28529 |
NN |
denotes |
XPD |
T5312 |
28530-28538 |
NN |
denotes |
function |
T5313 |
28538-28539 |
. |
denotes |
? |
T5314 |
28539-28648 |
sentence |
denotes |
Interallelic complementation is most often observed in multimeric proteins with multiple functional domains. |
T5315 |
28540-28552 |
JJ |
denotes |
Interallelic |
T5316 |
28553-28568 |
NN |
denotes |
complementation |
T5317 |
28583-28591 |
VBN |
denotes |
observed |
T5318 |
28569-28571 |
VBZ |
denotes |
is |
T5319 |
28572-28576 |
RBS |
denotes |
most |
T5320 |
28577-28582 |
RB |
denotes |
often |
T5321 |
28592-28594 |
IN |
denotes |
in |
T5322 |
28595-28605 |
JJ |
denotes |
multimeric |
T5323 |
28606-28614 |
NN |
denotes |
proteins |
T5324 |
28615-28619 |
IN |
denotes |
with |
T5325 |
28620-28628 |
JJ |
denotes |
multiple |
T5326 |
28640-28647 |
NNS |
denotes |
domains |
T5327 |
28629-28639 |
JJ |
denotes |
functional |
T5328 |
28647-28648 |
. |
denotes |
. |
T5329 |
28648-28867 |
sentence |
denotes |
Unfortunately, the structure–function relationship between disease-causing mutations and XPD functional domains, including detailed structural information on XPD or even its stoichiometry within TFIIH, remains unknown. |
T5330 |
28649-28662 |
RB |
denotes |
Unfortunately |
T5331 |
28851-28858 |
VBZ |
denotes |
remains |
T5332 |
28662-28664 |
, |
denotes |
, |
T5333 |
28664-28667 |
DT |
denotes |
the |
T5334 |
28687-28699 |
NN |
denotes |
relationship |
T5335 |
28668-28677 |
NN |
denotes |
structure |
T5336 |
28678-28686 |
NN |
denotes |
function |
T5337 |
28677-28678 |
HYPH |
denotes |
– |
T5338 |
28700-28707 |
IN |
denotes |
between |
T5339 |
28708-28715 |
NN |
denotes |
disease |
T5340 |
28716-28723 |
VBG |
denotes |
causing |
T5341 |
28715-28716 |
HYPH |
denotes |
- |
T5342 |
28724-28733 |
NNS |
denotes |
mutations |
T5343 |
28734-28737 |
CC |
denotes |
and |
T5344 |
28738-28741 |
NN |
denotes |
XPD |
T5345 |
28753-28760 |
NNS |
denotes |
domains |
T5346 |
28742-28752 |
JJ |
denotes |
functional |
T5347 |
28760-28762 |
, |
denotes |
, |
T5348 |
28762-28771 |
VBG |
denotes |
including |
T5349 |
28772-28780 |
JJ |
denotes |
detailed |
T5350 |
28792-28803 |
NN |
denotes |
information |
T5351 |
28781-28791 |
JJ |
denotes |
structural |
T5352 |
28804-28806 |
IN |
denotes |
on |
T5353 |
28807-28810 |
NN |
denotes |
XPD |
T5354 |
28811-28813 |
CC |
denotes |
or |
T5355 |
28814-28818 |
RB |
denotes |
even |
T5356 |
28823-28836 |
NN |
denotes |
stoichiometry |
T5357 |
28819-28822 |
PRP$ |
denotes |
its |
T5358 |
28837-28843 |
IN |
denotes |
within |
T5359 |
28844-28849 |
NN |
denotes |
TFIIH |
T5360 |
28849-28851 |
, |
denotes |
, |
T5361 |
28859-28866 |
JJ |
denotes |
unknown |
T5362 |
28866-28867 |
. |
denotes |
. |
T5363 |
28867-29136 |
sentence |
denotes |
However, based on the ability of cell extracts that are defective in two different TFIIH components (XPD and XPB) to complement NER activity in vitro [26], it is likely that TFIIH (or its components) can either multimerise or exchange at least during the NER reaction. |
T5364 |
28868-28875 |
RB |
denotes |
However |
T5365 |
29027-29029 |
VBZ |
denotes |
is |
T5366 |
28875-28877 |
, |
denotes |
, |
T5367 |
28877-28882 |
VBN |
denotes |
based |
T5368 |
28883-28885 |
IN |
denotes |
on |
T5369 |
28886-28889 |
DT |
denotes |
the |
T5370 |
28890-28897 |
NN |
denotes |
ability |
T5371 |
28898-28900 |
IN |
denotes |
of |
T5372 |
28901-28905 |
NN |
denotes |
cell |
T5373 |
28906-28914 |
NNS |
denotes |
extracts |
T5374 |
28915-28919 |
WDT |
denotes |
that |
T5375 |
28920-28923 |
VBP |
denotes |
are |
T5376 |
28924-28933 |
JJ |
denotes |
defective |
T5377 |
28934-28936 |
IN |
denotes |
in |
T5378 |
28937-28940 |
CD |
denotes |
two |
T5379 |
28957-28967 |
NNS |
denotes |
components |
T5380 |
28941-28950 |
JJ |
denotes |
different |
T5381 |
28951-28956 |
NN |
denotes |
TFIIH |
T5382 |
28968-28969 |
-LRB- |
denotes |
( |
T5383 |
28969-28972 |
NN |
denotes |
XPD |
T5384 |
28973-28976 |
CC |
denotes |
and |
T5385 |
28977-28980 |
NN |
denotes |
XPB |
T5386 |
28980-28981 |
-RRB- |
denotes |
) |
T5387 |
28982-28984 |
TO |
denotes |
to |
T5388 |
28985-28995 |
VB |
denotes |
complement |
T5389 |
28996-28999 |
NN |
denotes |
NER |
T5390 |
29000-29008 |
NN |
denotes |
activity |
T5391 |
29009-29011 |
FW |
denotes |
in |
T5392 |
29012-29017 |
FW |
denotes |
vitro |
T5393 |
29018-29019 |
-LRB- |
denotes |
[ |
T5394 |
29019-29021 |
CD |
denotes |
26 |
T5395 |
29021-29022 |
-RRB- |
denotes |
] |
T5396 |
29022-29024 |
, |
denotes |
, |
T5397 |
29024-29026 |
PRP |
denotes |
it |
T5398 |
29030-29036 |
JJ |
denotes |
likely |
T5399 |
29037-29041 |
IN |
denotes |
that |
T5400 |
29079-29090 |
VB |
denotes |
multimerise |
T5401 |
29042-29047 |
NN |
denotes |
TFIIH |
T5402 |
29048-29049 |
-LRB- |
denotes |
( |
T5403 |
29049-29051 |
CC |
denotes |
or |
T5404 |
29052-29055 |
PRP$ |
denotes |
its |
T5405 |
29056-29066 |
NNS |
denotes |
components |
T5406 |
29066-29067 |
-RRB- |
denotes |
) |
T5407 |
29068-29071 |
MD |
denotes |
can |
T5408 |
29072-29078 |
CC |
denotes |
either |
T5409 |
29091-29093 |
CC |
denotes |
or |
T5410 |
29094-29102 |
VB |
denotes |
exchange |
T5411 |
29103-29105 |
RB |
denotes |
at |
T5412 |
29106-29111 |
RBS |
denotes |
least |
T5413 |
29112-29118 |
IN |
denotes |
during |
T5414 |
29119-29122 |
DT |
denotes |
the |
T5415 |
29127-29135 |
NN |
denotes |
reaction |
T5416 |
29123-29126 |
NN |
denotes |
NER |
T5417 |
29135-29136 |
. |
denotes |
. |
T5418 |
29136-29209 |
sentence |
denotes |
Furthermore, XPD is known to be a “loosely bound” subunit of TFIIH [27]. |
T5419 |
29137-29148 |
RB |
denotes |
Furthermore |
T5420 |
29157-29162 |
VBN |
denotes |
known |
T5421 |
29148-29150 |
, |
denotes |
, |
T5422 |
29150-29153 |
NN |
denotes |
XPD |
T5423 |
29154-29156 |
VBZ |
denotes |
is |
T5424 |
29163-29165 |
TO |
denotes |
to |
T5425 |
29166-29168 |
VB |
denotes |
be |
T5426 |
29169-29170 |
DT |
denotes |
a |
T5427 |
29187-29194 |
NN |
denotes |
subunit |
T5428 |
29171-29172 |
RB |
denotes |
“ |
T5429 |
29172-29179 |
RB |
denotes |
loosely |
T5430 |
29180-29185 |
VBN |
denotes |
bound |
T5431 |
29185-29186 |
'' |
denotes |
” |
T5432 |
29195-29197 |
IN |
denotes |
of |
T5433 |
29198-29203 |
NN |
denotes |
TFIIH |
T5434 |
29204-29205 |
-LRB- |
denotes |
[ |
T5435 |
29205-29207 |
CD |
denotes |
27 |
T5436 |
29207-29208 |
-RRB- |
denotes |
] |
T5437 |
29208-29209 |
. |
denotes |
. |
T5438 |
29209-29566 |
sentence |
denotes |
We thus envisage the molecular mechanism of interallelic complementation to involve the exchange of XPD molecules within the TFIIH complex or turnover of TFIIH complexes containing different XPD molecules at the site of DNA damage during the course of the global genome as well as transcription-coupled repair of either UV-induced or endogenous DNA damage. |
T5439 |
29210-29212 |
PRP |
denotes |
We |
T5440 |
29218-29226 |
VBP |
denotes |
envisage |
T5441 |
29213-29217 |
RB |
denotes |
thus |
T5442 |
29227-29230 |
DT |
denotes |
the |
T5443 |
29241-29250 |
NN |
denotes |
mechanism |
T5444 |
29231-29240 |
JJ |
denotes |
molecular |
T5445 |
29286-29293 |
VB |
denotes |
involve |
T5446 |
29251-29253 |
IN |
denotes |
of |
T5447 |
29254-29266 |
JJ |
denotes |
interallelic |
T5448 |
29267-29282 |
NN |
denotes |
complementation |
T5449 |
29283-29285 |
TO |
denotes |
to |
T5450 |
29294-29297 |
DT |
denotes |
the |
T5451 |
29298-29306 |
NN |
denotes |
exchange |
T5452 |
29307-29309 |
IN |
denotes |
of |
T5453 |
29310-29313 |
NN |
denotes |
XPD |
T5454 |
29314-29323 |
NNS |
denotes |
molecules |
T5455 |
29324-29330 |
IN |
denotes |
within |
T5456 |
29331-29334 |
DT |
denotes |
the |
T5457 |
29341-29348 |
NN |
denotes |
complex |
T5458 |
29335-29340 |
NN |
denotes |
TFIIH |
T5459 |
29349-29351 |
CC |
denotes |
or |
T5460 |
29352-29360 |
NN |
denotes |
turnover |
T5461 |
29361-29363 |
IN |
denotes |
of |
T5462 |
29364-29369 |
NN |
denotes |
TFIIH |
T5463 |
29370-29379 |
NNS |
denotes |
complexes |
T5464 |
29380-29390 |
VBG |
denotes |
containing |
T5465 |
29391-29400 |
JJ |
denotes |
different |
T5466 |
29405-29414 |
NNS |
denotes |
molecules |
T5467 |
29401-29404 |
NN |
denotes |
XPD |
T5468 |
29415-29417 |
IN |
denotes |
at |
T5469 |
29418-29421 |
DT |
denotes |
the |
T5470 |
29422-29426 |
NN |
denotes |
site |
T5471 |
29427-29429 |
IN |
denotes |
of |
T5472 |
29430-29433 |
NN |
denotes |
DNA |
T5473 |
29434-29440 |
NN |
denotes |
damage |
T5474 |
29441-29447 |
IN |
denotes |
during |
T5475 |
29448-29451 |
DT |
denotes |
the |
T5476 |
29452-29458 |
NN |
denotes |
course |
T5477 |
29459-29461 |
IN |
denotes |
of |
T5478 |
29462-29465 |
DT |
denotes |
the |
T5479 |
29473-29479 |
NN |
denotes |
genome |
T5480 |
29466-29472 |
JJ |
denotes |
global |
T5481 |
29480-29482 |
RB |
denotes |
as |
T5482 |
29488-29490 |
IN |
denotes |
as |
T5483 |
29483-29487 |
RB |
denotes |
well |
T5484 |
29491-29504 |
NN |
denotes |
transcription |
T5485 |
29505-29512 |
VBN |
denotes |
coupled |
T5486 |
29504-29505 |
HYPH |
denotes |
- |
T5487 |
29513-29519 |
NN |
denotes |
repair |
T5488 |
29520-29522 |
IN |
denotes |
of |
T5489 |
29523-29529 |
CC |
denotes |
either |
T5490 |
29559-29565 |
NN |
denotes |
damage |
T5491 |
29530-29532 |
NN |
denotes |
UV |
T5492 |
29533-29540 |
VBN |
denotes |
induced |
T5493 |
29532-29533 |
HYPH |
denotes |
- |
T5494 |
29541-29543 |
CC |
denotes |
or |
T5495 |
29544-29554 |
JJ |
denotes |
endogenous |
T5496 |
29555-29558 |
NN |
denotes |
DNA |
T5497 |
29565-29566 |
. |
denotes |
. |
T5658 |
29877-29882 |
NN |
denotes |
rad15 |
T5607 |
29568-29569 |
DT |
denotes |
A |
T5608 |
29580-29588 |
NN |
denotes |
Paradigm |
T5609 |
29570-29579 |
JJ |
denotes |
Biallelic |
T5610 |
29589-29592 |
IN |
denotes |
for |
T5611 |
29593-29596 |
NN |
denotes |
XPD |
T5612 |
29597-29606 |
NNS |
denotes |
Disorders |
T5613 |
29606-29888 |
sentence |
denotes |
Recently, proteins originating from presumed null alleles were biochemically characterised as inactive in basal transcription [27], providing an explanation as to why these alleles failed to rescue lethality in haploid S. pombe with a null mutation in the XPD homologue rad15 [19]. |
T5614 |
29607-29615 |
RB |
denotes |
Recently |
T5615 |
29684-29697 |
VBN |
denotes |
characterised |
T5616 |
29615-29617 |
, |
denotes |
, |
T5617 |
29617-29625 |
NN |
denotes |
proteins |
T5618 |
29626-29637 |
VBG |
denotes |
originating |
T5619 |
29638-29642 |
IN |
denotes |
from |
T5620 |
29643-29651 |
VBN |
denotes |
presumed |
T5621 |
29657-29664 |
NNS |
denotes |
alleles |
T5622 |
29652-29656 |
JJ |
denotes |
null |
T5623 |
29665-29669 |
VBD |
denotes |
were |
T5624 |
29670-29683 |
RB |
denotes |
biochemically |
T5625 |
29698-29700 |
IN |
denotes |
as |
T5626 |
29701-29709 |
JJ |
denotes |
inactive |
T5627 |
29710-29712 |
IN |
denotes |
in |
T5628 |
29713-29718 |
JJ |
denotes |
basal |
T5629 |
29719-29732 |
NN |
denotes |
transcription |
T5630 |
29733-29734 |
-LRB- |
denotes |
[ |
T5631 |
29734-29736 |
CD |
denotes |
27 |
T5632 |
29736-29737 |
-RRB- |
denotes |
] |
T5633 |
29737-29739 |
, |
denotes |
, |
T5634 |
29739-29748 |
VBG |
denotes |
providing |
T5635 |
29749-29751 |
DT |
denotes |
an |
T5636 |
29752-29763 |
NN |
denotes |
explanation |
T5637 |
29764-29766 |
IN |
denotes |
as |
T5638 |
29767-29769 |
IN |
denotes |
to |
T5639 |
29770-29773 |
WRB |
denotes |
why |
T5640 |
29788-29794 |
VBD |
denotes |
failed |
T5641 |
29774-29779 |
DT |
denotes |
these |
T5642 |
29780-29787 |
NNS |
denotes |
alleles |
T5643 |
29795-29797 |
TO |
denotes |
to |
T5644 |
29798-29804 |
VB |
denotes |
rescue |
T5645 |
29805-29814 |
NN |
denotes |
lethality |
T5646 |
29815-29817 |
IN |
denotes |
in |
T5647 |
29818-29825 |
JJ |
denotes |
haploid |
T5648 |
29829-29834 |
FW |
denotes |
pombe |
T5649 |
29826-29828 |
FW |
denotes |
S. |
T5650 |
29835-29839 |
IN |
denotes |
with |
T5651 |
29840-29841 |
DT |
denotes |
a |
T5652 |
29847-29855 |
NN |
denotes |
mutation |
T5653 |
29842-29846 |
JJ |
denotes |
null |
T5654 |
29856-29858 |
IN |
denotes |
in |
T5655 |
29859-29862 |
DT |
denotes |
the |
T5656 |
29867-29876 |
NN |
denotes |
homologue |
T5657 |
29863-29866 |
NN |
denotes |
XPD |
T5659 |
29883-29884 |
-LRB- |
denotes |
[ |
T5660 |
29884-29886 |
CD |
denotes |
19 |
T5661 |
29886-29887 |
-RRB- |
denotes |
] |
T5662 |
29887-29888 |
. |
denotes |
. |
T5663 |
29888-30120 |
sentence |
denotes |
Our data suggest that certain presumed null alleles, although unable on their own to support basal transcription, may in fact have a substantial impact on disease outcome in compound heterozygous humans, as they do in mouse models. |
T5664 |
29889-29892 |
PRP$ |
denotes |
Our |
T5665 |
29893-29897 |
NNS |
denotes |
data |
T5666 |
29898-29905 |
VBP |
denotes |
suggest |
T5667 |
29906-29910 |
IN |
denotes |
that |
T5668 |
30015-30019 |
VB |
denotes |
have |
T5669 |
29911-29918 |
JJ |
denotes |
certain |
T5670 |
29933-29940 |
NNS |
denotes |
alleles |
T5671 |
29919-29927 |
VBN |
denotes |
presumed |
T5672 |
29928-29932 |
JJ |
denotes |
null |
T5673 |
29940-29942 |
, |
denotes |
, |
T5674 |
29942-29950 |
IN |
denotes |
although |
T5675 |
29951-29957 |
JJ |
denotes |
unable |
T5676 |
29958-29960 |
IN |
denotes |
on |
T5677 |
29974-29981 |
VB |
denotes |
support |
T5678 |
29961-29966 |
PRP$ |
denotes |
their |
T5679 |
29967-29970 |
NN |
denotes |
own |
T5680 |
29971-29973 |
TO |
denotes |
to |
T5681 |
29982-29987 |
JJ |
denotes |
basal |
T5682 |
29988-30001 |
NN |
denotes |
transcription |
T5683 |
30001-30003 |
, |
denotes |
, |
T5684 |
30003-30006 |
MD |
denotes |
may |
T5685 |
30007-30009 |
IN |
denotes |
in |
T5686 |
30010-30014 |
NN |
denotes |
fact |
T5687 |
30020-30021 |
DT |
denotes |
a |
T5688 |
30034-30040 |
NN |
denotes |
impact |
T5689 |
30022-30033 |
JJ |
denotes |
substantial |
T5690 |
30041-30043 |
IN |
denotes |
on |
T5691 |
30044-30051 |
NN |
denotes |
disease |
T5692 |
30052-30059 |
NN |
denotes |
outcome |
T5693 |
30060-30062 |
IN |
denotes |
in |
T5694 |
30063-30071 |
NN |
denotes |
compound |
T5695 |
30085-30091 |
NNS |
denotes |
humans |
T5696 |
30072-30084 |
JJ |
denotes |
heterozygous |
T5697 |
30091-30093 |
, |
denotes |
, |
T5698 |
30093-30095 |
IN |
denotes |
as |
T5699 |
30104-30106 |
IN |
denotes |
in |
T5700 |
30096-30100 |
PRP |
denotes |
they |
T5701 |
30101-30103 |
VBP |
denotes |
do |
T5702 |
30107-30112 |
NN |
denotes |
mouse |
T5703 |
30113-30119 |
NNS |
denotes |
models |
T5704 |
30119-30120 |
. |
denotes |
. |
T5705 |
30120-30329 |
sentence |
denotes |
Clinical evidence in support of this hypothesis comes from a number of XP complementation group D patients that do not fit within the framework of the current monoallelic paradigm of XPD disorders (Figure 5). |
T5706 |
30121-30129 |
JJ |
denotes |
Clinical |
T5707 |
30130-30138 |
NN |
denotes |
evidence |
T5708 |
30169-30174 |
VBZ |
denotes |
comes |
T5709 |
30139-30141 |
IN |
denotes |
in |
T5710 |
30142-30149 |
NN |
denotes |
support |
T5711 |
30150-30152 |
IN |
denotes |
of |
T5712 |
30153-30157 |
DT |
denotes |
this |
T5713 |
30158-30168 |
NN |
denotes |
hypothesis |
T5714 |
30175-30179 |
IN |
denotes |
from |
T5715 |
30180-30181 |
DT |
denotes |
a |
T5716 |
30182-30188 |
NN |
denotes |
number |
T5717 |
30189-30191 |
IN |
denotes |
of |
T5718 |
30192-30194 |
NN |
denotes |
XP |
T5719 |
30219-30227 |
NNS |
denotes |
patients |
T5720 |
30195-30210 |
NN |
denotes |
complementation |
T5721 |
30211-30216 |
NN |
denotes |
group |
T5722 |
30217-30218 |
NN |
denotes |
D |
T5723 |
30228-30232 |
WDT |
denotes |
that |
T5724 |
30240-30243 |
VB |
denotes |
fit |
T5725 |
30233-30235 |
VBP |
denotes |
do |
T5726 |
30236-30239 |
RB |
denotes |
not |
T5727 |
30244-30250 |
IN |
denotes |
within |
T5728 |
30251-30254 |
DT |
denotes |
the |
T5729 |
30255-30264 |
NN |
denotes |
framework |
T5730 |
30265-30267 |
IN |
denotes |
of |
T5731 |
30268-30271 |
DT |
denotes |
the |
T5732 |
30292-30300 |
NN |
denotes |
paradigm |
T5733 |
30272-30279 |
JJ |
denotes |
current |
T5734 |
30280-30291 |
JJ |
denotes |
monoallelic |
T5735 |
30301-30303 |
IN |
denotes |
of |
T5736 |
30304-30307 |
NN |
denotes |
XPD |
T5737 |
30308-30317 |
NNS |
denotes |
disorders |
T5738 |
30318-30319 |
-LRB- |
denotes |
( |
T5739 |
30319-30325 |
NN |
denotes |
Figure |
T5740 |
30326-30327 |
CD |
denotes |
5 |
T5741 |
30327-30328 |
-RRB- |
denotes |
) |
T5742 |
30328-30329 |
. |
denotes |
. |
T5743 |
30329-30757 |
sentence |
denotes |
In contrast to two hemizygous XPDXPCS patients carrying the XPDG47R- or XPDR666W-encoding alleles who died of the disease before 2 y of age, two compound heterozygous XPDXPCS patients carrying the same XPDG47R- or XPDR666W-encoding alleles in addition to the presumed null XPDL461V+del716−730 both had considerably milder disease symptoms and survived more than ten times longer (A. Lehmann, personal communication) (Figure 5). |
T5744 |
30330-30332 |
IN |
denotes |
In |
T5745 |
30628-30631 |
VBD |
denotes |
had |
T5746 |
30333-30341 |
NN |
denotes |
contrast |
T5747 |
30342-30344 |
IN |
denotes |
to |
T5748 |
30345-30348 |
CD |
denotes |
two |
T5749 |
30368-30376 |
NNS |
denotes |
patients |
T5750 |
30349-30359 |
JJ |
denotes |
hemizygous |
T5751 |
30360-30367 |
NN |
denotes |
XPDXPCS |
T5752 |
30377-30385 |
VBG |
denotes |
carrying |
T5753 |
30386-30389 |
DT |
denotes |
the |
T5754 |
30420-30427 |
NNS |
denotes |
alleles |
T5755 |
30390-30397 |
NN |
denotes |
XPDG47R |
T5756 |
30411-30419 |
VBG |
denotes |
encoding |
T5757 |
30397-30398 |
HYPH |
denotes |
- |
T5758 |
30399-30401 |
CC |
denotes |
or |
T5759 |
30402-30410 |
NN |
denotes |
XPDR666W |
T5760 |
30410-30411 |
HYPH |
denotes |
- |
T5761 |
30428-30431 |
WP |
denotes |
who |
T5762 |
30432-30436 |
VBD |
denotes |
died |
T5763 |
30437-30439 |
IN |
denotes |
of |
T5764 |
30440-30443 |
DT |
denotes |
the |
T5765 |
30444-30451 |
NN |
denotes |
disease |
T5766 |
30452-30458 |
IN |
denotes |
before |
T5767 |
30459-30460 |
CD |
denotes |
2 |
T5768 |
30461-30462 |
NNS |
denotes |
y |
T5769 |
30463-30465 |
IN |
denotes |
of |
T5770 |
30466-30469 |
NN |
denotes |
age |
T5771 |
30469-30471 |
, |
denotes |
, |
T5772 |
30471-30474 |
CD |
denotes |
two |
T5773 |
30505-30513 |
NNS |
denotes |
patients |
T5774 |
30475-30483 |
JJ |
denotes |
compound |
T5775 |
30484-30496 |
JJ |
denotes |
heterozygous |
T5776 |
30497-30504 |
NN |
denotes |
XPDXPCS |
T5777 |
30514-30522 |
VBG |
denotes |
carrying |
T5778 |
30523-30526 |
DT |
denotes |
the |
T5779 |
30562-30569 |
NNS |
denotes |
alleles |
T5780 |
30527-30531 |
JJ |
denotes |
same |
T5781 |
30532-30539 |
NN |
denotes |
XPDG47R |
T5782 |
30553-30561 |
VBG |
denotes |
encoding |
T5783 |
30539-30540 |
HYPH |
denotes |
- |
T5784 |
30541-30543 |
CC |
denotes |
or |
T5785 |
30544-30552 |
NN |
denotes |
XPDR666W |
T5786 |
30552-30553 |
HYPH |
denotes |
- |
T5787 |
30570-30572 |
IN |
denotes |
in |
T5788 |
30573-30581 |
NN |
denotes |
addition |
T5789 |
30582-30584 |
IN |
denotes |
to |
T5790 |
30585-30588 |
DT |
denotes |
the |
T5791 |
30619-30622 |
NN |
denotes |
730 |
T5792 |
30589-30597 |
VBN |
denotes |
presumed |
T5793 |
30598-30602 |
JJ |
denotes |
null |
T5794 |
30603-30611 |
NN |
denotes |
XPDL461V |
T5795 |
30611-30612 |
SYM |
denotes |
+ |
T5796 |
30612-30618 |
NN |
denotes |
del716 |
T5797 |
30618-30619 |
HYPH |
denotes |
− |
T5798 |
30623-30627 |
DT |
denotes |
both |
T5799 |
30632-30644 |
RB |
denotes |
considerably |
T5800 |
30645-30651 |
JJR |
denotes |
milder |
T5801 |
30660-30668 |
NNS |
denotes |
symptoms |
T5802 |
30652-30659 |
NN |
denotes |
disease |
T5803 |
30669-30672 |
CC |
denotes |
and |
T5804 |
30673-30681 |
VBD |
denotes |
survived |
T5805 |
30682-30686 |
JJR |
denotes |
more |
T5806 |
30692-30695 |
CD |
denotes |
ten |
T5807 |
30687-30691 |
IN |
denotes |
than |
T5808 |
30696-30701 |
NNS |
denotes |
times |
T5809 |
30702-30708 |
RBR |
denotes |
longer |
T5810 |
30709-30710 |
-LRB- |
denotes |
( |
T5811 |
30710-30712 |
NNP |
denotes |
A. |
T5812 |
30713-30720 |
NNP |
denotes |
Lehmann |
T5813 |
30720-30722 |
, |
denotes |
, |
T5814 |
30722-30730 |
JJ |
denotes |
personal |
T5815 |
30731-30744 |
NN |
denotes |
communication |
T5816 |
30744-30745 |
-RRB- |
denotes |
) |
T5817 |
30746-30747 |
-LRB- |
denotes |
( |
T5818 |
30747-30753 |
NN |
denotes |
Figure |
T5819 |
30754-30755 |
CD |
denotes |
5 |
T5820 |
30755-30756 |
-RRB- |
denotes |
) |
T5821 |
30756-30757 |
. |
denotes |
. |
T5822 |
30757-30872 |
sentence |
denotes |
Compound heterozygosity is also associated with the recently reported combination XP and TTD (XPTTD) syndrome [8]. |
T5823 |
30758-30766 |
NN |
denotes |
Compound |
T5824 |
30767-30781 |
NN |
denotes |
heterozygosity |
T5825 |
30790-30800 |
VBN |
denotes |
associated |
T5826 |
30782-30784 |
VBZ |
denotes |
is |
T5827 |
30785-30789 |
RB |
denotes |
also |
T5828 |
30801-30805 |
IN |
denotes |
with |
T5829 |
30806-30809 |
DT |
denotes |
the |
T5830 |
30859-30867 |
NN |
denotes |
syndrome |
T5831 |
30810-30818 |
RB |
denotes |
recently |
T5832 |
30819-30827 |
VBN |
denotes |
reported |
T5833 |
30828-30839 |
NN |
denotes |
combination |
T5834 |
30840-30842 |
NN |
denotes |
XP |
T5835 |
30843-30846 |
CC |
denotes |
and |
T5836 |
30847-30850 |
NN |
denotes |
TTD |
T5837 |
30851-30852 |
-LRB- |
denotes |
( |
T5838 |
30852-30857 |
NN |
denotes |
XPTTD |
T5839 |
30857-30858 |
-RRB- |
denotes |
) |
T5840 |
30868-30869 |
-LRB- |
denotes |
[ |
T5841 |
30869-30870 |
CD |
denotes |
8 |
T5842 |
30870-30871 |
-RRB- |
denotes |
] |
T5843 |
30871-30872 |
. |
denotes |
. |
T5844 |
30872-31017 |
sentence |
denotes |
Similar to the XpdTTD/†XPCS and XpdTTD/†XP mice described here, both patients with XPTTD described so far had intermediate hair cysteine values. |
T5845 |
30873-30880 |
JJ |
denotes |
Similar |
T5846 |
30979-30982 |
VBD |
denotes |
had |
T5847 |
30881-30883 |
IN |
denotes |
to |
T5848 |
30884-30887 |
DT |
denotes |
the |
T5849 |
30916-30920 |
NNS |
denotes |
mice |
T5850 |
30888-30894 |
NN |
denotes |
XpdTTD |
T5851 |
30895-30900 |
NN |
denotes |
†XPCS |
T5852 |
30894-30895 |
HYPH |
denotes |
/ |
T5853 |
30901-30904 |
CC |
denotes |
and |
T5854 |
30905-30911 |
NN |
denotes |
XpdTTD |
T5855 |
30912-30915 |
NN |
denotes |
†XP |
T5856 |
30911-30912 |
HYPH |
denotes |
/ |
T5857 |
30921-30930 |
VBN |
denotes |
described |
T5858 |
30931-30935 |
RB |
denotes |
here |
T5859 |
30935-30937 |
, |
denotes |
, |
T5860 |
30937-30941 |
DT |
denotes |
both |
T5861 |
30942-30950 |
NNS |
denotes |
patients |
T5862 |
30951-30955 |
IN |
denotes |
with |
T5863 |
30956-30961 |
NN |
denotes |
XPTTD |
T5864 |
30962-30971 |
VBN |
denotes |
described |
T5865 |
30972-30974 |
RB |
denotes |
so |
T5866 |
30975-30978 |
RB |
denotes |
far |
T5867 |
30983-30995 |
JJ |
denotes |
intermediate |
T5868 |
31010-31016 |
NNS |
denotes |
values |
T5869 |
30996-31000 |
NN |
denotes |
hair |
T5870 |
31001-31009 |
NN |
denotes |
cysteine |
T5871 |
31016-31017 |
. |
denotes |
. |
T5872 |
31017-31159 |
sentence |
denotes |
Furthermore, XPTTD patient XP38BR carried a “causative” TTD mutation in one allele and a novel point mutation encoding XPDL485P in the other. |
T5873 |
31018-31029 |
RB |
denotes |
Furthermore |
T5874 |
31052-31059 |
VBD |
denotes |
carried |
T5875 |
31029-31031 |
, |
denotes |
, |
T5876 |
31031-31036 |
NN |
denotes |
XPTTD |
T5877 |
31045-31051 |
NN |
denotes |
XP38BR |
T5878 |
31037-31044 |
NN |
denotes |
patient |
T5879 |
31060-31061 |
DT |
denotes |
a |
T5880 |
31078-31086 |
NN |
denotes |
mutation |
T5881 |
31062-31063 |
`` |
denotes |
“ |
T5882 |
31063-31072 |
JJ |
denotes |
causative |
T5883 |
31072-31073 |
'' |
denotes |
” |
T5884 |
31074-31077 |
NN |
denotes |
TTD |
T5885 |
31087-31089 |
IN |
denotes |
in |
T5886 |
31090-31093 |
CD |
denotes |
one |
T5887 |
31094-31100 |
NN |
denotes |
allele |
T5888 |
31101-31104 |
CC |
denotes |
and |
T5889 |
31105-31106 |
DT |
denotes |
a |
T5890 |
31119-31127 |
NN |
denotes |
mutation |
T5891 |
31107-31112 |
JJ |
denotes |
novel |
T5892 |
31113-31118 |
NN |
denotes |
point |
T5893 |
31128-31136 |
VBG |
denotes |
encoding |
T5894 |
31137-31145 |
NN |
denotes |
XPDL485P |
T5895 |
31146-31148 |
IN |
denotes |
in |
T5896 |
31149-31152 |
DT |
denotes |
the |
T5897 |
31153-31158 |
JJ |
denotes |
other |
T5898 |
31158-31159 |
. |
denotes |
. |
T5899 |
31159-31447 |
sentence |
denotes |
Although the XPDL485P-encoding allele fails to complement viability in the haploid S. pombe rad15 deletion strain and is thus interpretable as a null allele [8], we nonetheless suggest that the combined XPTTD phenotype in this patient involves phenotypic contributions from both alleles. |
T5900 |
31160-31168 |
IN |
denotes |
Although |
T5901 |
31198-31203 |
VBZ |
denotes |
fails |
T5902 |
31169-31172 |
DT |
denotes |
the |
T5903 |
31191-31197 |
NN |
denotes |
allele |
T5904 |
31173-31181 |
NN |
denotes |
XPDL485P |
T5905 |
31182-31190 |
VBG |
denotes |
encoding |
T5906 |
31181-31182 |
HYPH |
denotes |
- |
T5907 |
31337-31344 |
VBP |
denotes |
suggest |
T5908 |
31204-31206 |
TO |
denotes |
to |
T5909 |
31207-31217 |
VB |
denotes |
complement |
T5910 |
31218-31227 |
NN |
denotes |
viability |
T5911 |
31228-31230 |
IN |
denotes |
in |
T5912 |
31231-31234 |
DT |
denotes |
the |
T5913 |
31267-31273 |
NN |
denotes |
strain |
T5914 |
31235-31242 |
JJ |
denotes |
haploid |
T5915 |
31243-31245 |
FW |
denotes |
S. |
T5916 |
31246-31251 |
FW |
denotes |
pombe |
T5917 |
31252-31257 |
NN |
denotes |
rad15 |
T5918 |
31258-31266 |
NN |
denotes |
deletion |
T5919 |
31274-31277 |
CC |
denotes |
and |
T5920 |
31278-31280 |
VBZ |
denotes |
is |
T5921 |
31281-31285 |
RB |
denotes |
thus |
T5922 |
31286-31299 |
JJ |
denotes |
interpretable |
T5923 |
31300-31302 |
IN |
denotes |
as |
T5924 |
31303-31304 |
DT |
denotes |
a |
T5925 |
31310-31316 |
NN |
denotes |
allele |
T5926 |
31305-31309 |
JJ |
denotes |
null |
T5927 |
31317-31318 |
-LRB- |
denotes |
[ |
T5928 |
31318-31319 |
CD |
denotes |
8 |
T5929 |
31319-31320 |
-RRB- |
denotes |
] |
T5930 |
31320-31322 |
, |
denotes |
, |
T5931 |
31322-31324 |
PRP |
denotes |
we |
T5932 |
31325-31336 |
RB |
denotes |
nonetheless |
T5933 |
31345-31349 |
IN |
denotes |
that |
T5934 |
31395-31403 |
VBZ |
denotes |
involves |
T5935 |
31350-31353 |
DT |
denotes |
the |
T5936 |
31369-31378 |
NN |
denotes |
phenotype |
T5937 |
31354-31362 |
JJ |
denotes |
combined |
T5938 |
31363-31368 |
NN |
denotes |
XPTTD |
T5939 |
31379-31381 |
IN |
denotes |
in |
T5940 |
31382-31386 |
DT |
denotes |
this |
T5941 |
31387-31394 |
NN |
denotes |
patient |
T5942 |
31404-31414 |
JJ |
denotes |
phenotypic |
T5943 |
31415-31428 |
NNS |
denotes |
contributions |
T5944 |
31429-31433 |
IN |
denotes |
from |
T5945 |
31434-31438 |
DT |
denotes |
both |
T5946 |
31439-31446 |
NNS |
denotes |
alleles |
T5947 |
31446-31447 |
. |
denotes |
. |
T5948 |
31447-31580 |
sentence |
denotes |
Taken together, these data suggest a shift to a biallelic paradigm for compound heterozygous patients in XP complementation group D. |
T5949 |
31448-31453 |
VBN |
denotes |
Taken |
T5950 |
31475-31482 |
VBP |
denotes |
suggest |
T5951 |
31454-31462 |
RB |
denotes |
together |
T5952 |
31462-31464 |
, |
denotes |
, |
T5953 |
31464-31469 |
DT |
denotes |
these |
T5954 |
31470-31474 |
NNS |
denotes |
data |
T5955 |
31483-31484 |
DT |
denotes |
a |
T5956 |
31485-31490 |
NN |
denotes |
shift |
T5957 |
31491-31493 |
IN |
denotes |
to |
T5958 |
31494-31495 |
DT |
denotes |
a |
T5959 |
31506-31514 |
NN |
denotes |
paradigm |
T5960 |
31496-31505 |
JJ |
denotes |
biallelic |
T5961 |
31515-31518 |
IN |
denotes |
for |
T5962 |
31519-31527 |
NN |
denotes |
compound |
T5963 |
31541-31549 |
NNS |
denotes |
patients |
T5964 |
31528-31540 |
JJ |
denotes |
heterozygous |
T5965 |
31550-31552 |
IN |
denotes |
in |
T5966 |
31553-31555 |
NN |
denotes |
XP |
T5967 |
31578-31579 |
NN |
denotes |
D |
T5968 |
31556-31571 |
NN |
denotes |
complementation |
T5969 |
31572-31577 |
NN |
denotes |
group |
T5970 |
31579-31580 |
. |
denotes |
. |
T6041 |
32357-32366 |
NN |
denotes |
Potential |
T6042 |
32367-32369 |
IN |
denotes |
of |
T6043 |
32370-32378 |
VBN |
denotes |
Combined |
T6044 |
32389-32396 |
NNS |
denotes |
Alleles |
T6045 |
32379-32388 |
JJ |
denotes |
Recessive |
T6046 |
32397-32399 |
TO |
denotes |
to |
T6047 |
32400-32406 |
VB |
denotes |
Affect |
T6048 |
32407-32417 |
JJ |
denotes |
Phenotypic |
T6049 |
32418-32427 |
NN |
denotes |
Diversity |
T6050 |
32428-32430 |
IN |
denotes |
in |
T6051 |
32431-32438 |
NNS |
denotes |
Mammals |
T6052 |
32438-32547 |
sentence |
denotes |
In humans, the clinical relevance of biallelic effects such as interallelic complementation remains unknown. |
T6053 |
32439-32441 |
IN |
denotes |
In |
T6054 |
32531-32538 |
VBZ |
denotes |
remains |
T6055 |
32442-32448 |
NNS |
denotes |
humans |
T6056 |
32448-32450 |
, |
denotes |
, |
T6057 |
32450-32453 |
DT |
denotes |
the |
T6058 |
32463-32472 |
NN |
denotes |
relevance |
T6059 |
32454-32462 |
JJ |
denotes |
clinical |
T6060 |
32473-32475 |
IN |
denotes |
of |
T6061 |
32476-32485 |
JJ |
denotes |
biallelic |
T6062 |
32486-32493 |
NNS |
denotes |
effects |
T6063 |
32494-32498 |
JJ |
denotes |
such |
T6064 |
32499-32501 |
IN |
denotes |
as |
T6065 |
32502-32514 |
JJ |
denotes |
interallelic |
T6066 |
32515-32530 |
NN |
denotes |
complementation |
T6067 |
32539-32546 |
JJ |
denotes |
unknown |
T6068 |
32546-32547 |
. |
denotes |
. |
T6069 |
32547-32791 |
sentence |
denotes |
Although interallelic complementation between two endogenous mutant alleles has been described in cells from a compound heterozygous patient with methylmalonic acidaemia, no observable effects on disease outcome were noted in the patient [28]. |
T6070 |
32548-32556 |
IN |
denotes |
Although |
T6071 |
32633-32642 |
VBN |
denotes |
described |
T6072 |
32557-32569 |
JJ |
denotes |
interallelic |
T6073 |
32570-32585 |
NN |
denotes |
complementation |
T6074 |
32586-32593 |
IN |
denotes |
between |
T6075 |
32594-32597 |
CD |
denotes |
two |
T6076 |
32616-32623 |
NNS |
denotes |
alleles |
T6077 |
32598-32608 |
JJ |
denotes |
endogenous |
T6078 |
32609-32615 |
JJ |
denotes |
mutant |
T6079 |
32624-32627 |
VBZ |
denotes |
has |
T6080 |
32628-32632 |
VBN |
denotes |
been |
T6081 |
32765-32770 |
VBN |
denotes |
noted |
T6082 |
32643-32645 |
IN |
denotes |
in |
T6083 |
32646-32651 |
NNS |
denotes |
cells |
T6084 |
32652-32656 |
IN |
denotes |
from |
T6085 |
32657-32658 |
DT |
denotes |
a |
T6086 |
32681-32688 |
NN |
denotes |
patient |
T6087 |
32659-32667 |
NN |
denotes |
compound |
T6088 |
32668-32680 |
JJ |
denotes |
heterozygous |
T6089 |
32689-32693 |
IN |
denotes |
with |
T6090 |
32694-32707 |
JJ |
denotes |
methylmalonic |
T6091 |
32708-32717 |
NN |
denotes |
acidaemia |
T6092 |
32717-32719 |
, |
denotes |
, |
T6093 |
32719-32721 |
DT |
denotes |
no |
T6094 |
32733-32740 |
NNS |
denotes |
effects |
T6095 |
32722-32732 |
JJ |
denotes |
observable |
T6096 |
32741-32743 |
IN |
denotes |
on |
T6097 |
32744-32751 |
NN |
denotes |
disease |
T6098 |
32752-32759 |
NN |
denotes |
outcome |
T6099 |
32760-32764 |
VBD |
denotes |
were |
T6100 |
32771-32773 |
IN |
denotes |
in |
T6101 |
32774-32777 |
DT |
denotes |
the |
T6102 |
32778-32785 |
NN |
denotes |
patient |
T6103 |
32786-32787 |
-LRB- |
denotes |
[ |
T6104 |
32787-32789 |
CD |
denotes |
28 |
T6105 |
32789-32790 |
-RRB- |
denotes |
] |
T6106 |
32790-32791 |
. |
denotes |
. |
T6107 |
32791-33009 |
sentence |
denotes |
Thus, to the best of our knowledge, the amelioration of progeroid features observed here is the first in vivo demonstration in compound heterozygous animals of interallelic complementation relevant to a human disease. |
T6108 |
32792-32796 |
RB |
denotes |
Thus |
T6109 |
32881-32883 |
VBZ |
denotes |
is |
T6110 |
32796-32798 |
, |
denotes |
, |
T6111 |
32798-32800 |
IN |
denotes |
to |
T6112 |
32801-32804 |
DT |
denotes |
the |
T6113 |
32805-32809 |
JJS |
denotes |
best |
T6114 |
32810-32812 |
IN |
denotes |
of |
T6115 |
32813-32816 |
PRP$ |
denotes |
our |
T6116 |
32817-32826 |
NN |
denotes |
knowledge |
T6117 |
32826-32828 |
, |
denotes |
, |
T6118 |
32828-32831 |
DT |
denotes |
the |
T6119 |
32832-32844 |
NN |
denotes |
amelioration |
T6120 |
32845-32847 |
IN |
denotes |
of |
T6121 |
32848-32857 |
JJ |
denotes |
progeroid |
T6122 |
32858-32866 |
NNS |
denotes |
features |
T6123 |
32867-32875 |
VBN |
denotes |
observed |
T6124 |
32876-32880 |
RB |
denotes |
here |
T6125 |
32884-32887 |
DT |
denotes |
the |
T6126 |
32902-32915 |
NN |
denotes |
demonstration |
T6127 |
32888-32893 |
JJ |
denotes |
first |
T6128 |
32894-32896 |
FW |
denotes |
in |
T6129 |
32897-32901 |
FW |
denotes |
vivo |
T6130 |
32916-32918 |
IN |
denotes |
in |
T6131 |
32919-32927 |
NN |
denotes |
compound |
T6132 |
32941-32948 |
NNS |
denotes |
animals |
T6133 |
32928-32940 |
JJ |
denotes |
heterozygous |
T6134 |
32949-32951 |
IN |
denotes |
of |
T6135 |
32952-32964 |
JJ |
denotes |
interallelic |
T6136 |
32965-32980 |
NN |
denotes |
complementation |
T6137 |
32981-32989 |
JJ |
denotes |
relevant |
T6138 |
32990-32992 |
IN |
denotes |
to |
T6139 |
32993-32994 |
DT |
denotes |
a |
T6140 |
33001-33008 |
NN |
denotes |
disease |
T6141 |
32995-33000 |
JJ |
denotes |
human |
T6142 |
33008-33009 |
. |
denotes |
. |
T6143 |
33009-33385 |
sentence |
denotes |
Keeping in mind that the ~1,200 alleles known to exist for the CTRF gene implicated in the common autosomal recessive disorder cystic fibrosis alone [29] can theoretically result in ~700,000 different allelic combinations, the potential number of allelic combinations of different recessive mutations and single nucleotide polymorphisms genome-wide is currently incalculable. |
T6144 |
33010-33017 |
VBG |
denotes |
Keeping |
T6145 |
33359-33361 |
VBZ |
denotes |
is |
T6146 |
33018-33020 |
IN |
denotes |
in |
T6147 |
33021-33025 |
NN |
denotes |
mind |
T6148 |
33026-33030 |
IN |
denotes |
that |
T6149 |
33182-33188 |
VB |
denotes |
result |
T6150 |
33031-33034 |
DT |
denotes |
the |
T6151 |
33042-33049 |
NNS |
denotes |
alleles |
T6152 |
33035-33036 |
SYM |
denotes |
~ |
T6153 |
33036-33041 |
CD |
denotes |
1,200 |
T6154 |
33050-33055 |
VBN |
denotes |
known |
T6155 |
33056-33058 |
TO |
denotes |
to |
T6156 |
33059-33064 |
VB |
denotes |
exist |
T6157 |
33065-33068 |
IN |
denotes |
for |
T6158 |
33069-33072 |
DT |
denotes |
the |
T6159 |
33078-33082 |
NN |
denotes |
gene |
T6160 |
33073-33077 |
NN |
denotes |
CTRF |
T6161 |
33083-33093 |
VBN |
denotes |
implicated |
T6162 |
33094-33096 |
IN |
denotes |
in |
T6163 |
33097-33100 |
DT |
denotes |
the |
T6164 |
33128-33136 |
NN |
denotes |
disorder |
T6165 |
33101-33107 |
JJ |
denotes |
common |
T6166 |
33108-33117 |
JJ |
denotes |
autosomal |
T6167 |
33118-33127 |
JJ |
denotes |
recessive |
T6168 |
33137-33143 |
JJ |
denotes |
cystic |
T6169 |
33144-33152 |
NN |
denotes |
fibrosis |
T6170 |
33153-33158 |
RB |
denotes |
alone |
T6171 |
33159-33160 |
-LRB- |
denotes |
[ |
T6172 |
33160-33162 |
CD |
denotes |
29 |
T6173 |
33162-33163 |
-RRB- |
denotes |
] |
T6174 |
33164-33167 |
MD |
denotes |
can |
T6175 |
33168-33181 |
RB |
denotes |
theoretically |
T6176 |
33189-33191 |
IN |
denotes |
in |
T6177 |
33192-33193 |
SYM |
denotes |
~ |
T6178 |
33193-33200 |
CD |
denotes |
700,000 |
T6179 |
33219-33231 |
NNS |
denotes |
combinations |
T6180 |
33201-33210 |
JJ |
denotes |
different |
T6181 |
33211-33218 |
JJ |
denotes |
allelic |
T6182 |
33231-33233 |
, |
denotes |
, |
T6183 |
33233-33236 |
DT |
denotes |
the |
T6184 |
33247-33253 |
NN |
denotes |
number |
T6185 |
33237-33246 |
JJ |
denotes |
potential |
T6186 |
33254-33256 |
IN |
denotes |
of |
T6187 |
33257-33264 |
JJ |
denotes |
allelic |
T6188 |
33265-33277 |
NNS |
denotes |
combinations |
T6189 |
33278-33280 |
IN |
denotes |
of |
T6190 |
33281-33290 |
JJ |
denotes |
different |
T6191 |
33301-33310 |
NNS |
denotes |
mutations |
T6192 |
33291-33300 |
JJ |
denotes |
recessive |
T6193 |
33311-33314 |
CC |
denotes |
and |
T6194 |
33315-33321 |
JJ |
denotes |
single |
T6195 |
33333-33346 |
NNS |
denotes |
polymorphisms |
T6196 |
33322-33332 |
NN |
denotes |
nucleotide |
T6197 |
33347-33353 |
NN |
denotes |
genome |
T6198 |
33354-33358 |
JJ |
denotes |
wide |
T6199 |
33353-33354 |
HYPH |
denotes |
- |
T6200 |
33362-33371 |
RB |
denotes |
currently |
T6201 |
33372-33384 |
JJ |
denotes |
incalculable |
T6202 |
33384-33385 |
. |
denotes |
. |
T6203 |
33385-33592 |
sentence |
denotes |
We suggest biallelic effects as a previously underestimated yet important variable in considering genotype–phenotype relationships from autosomal recessive disease to normal phenotypic diversity in mammals. |
T6204 |
33386-33388 |
PRP |
denotes |
We |
T6205 |
33389-33396 |
VBP |
denotes |
suggest |
T6206 |
33397-33406 |
JJ |
denotes |
biallelic |
T6207 |
33407-33414 |
NNS |
denotes |
effects |
T6208 |
33415-33417 |
IN |
denotes |
as |
T6209 |
33418-33419 |
DT |
denotes |
a |
T6210 |
33460-33468 |
NN |
denotes |
variable |
T6211 |
33420-33430 |
RB |
denotes |
previously |
T6212 |
33431-33445 |
VBN |
denotes |
underestimated |
T6213 |
33450-33459 |
JJ |
denotes |
important |
T6214 |
33446-33449 |
RB |
denotes |
yet |
T6215 |
33469-33471 |
IN |
denotes |
in |
T6216 |
33472-33483 |
VBG |
denotes |
considering |
T6217 |
33484-33492 |
NN |
denotes |
genotype |
T6218 |
33493-33502 |
NN |
denotes |
phenotype |
T6219 |
33492-33493 |
HYPH |
denotes |
– |
T6220 |
33503-33516 |
NNS |
denotes |
relationships |
T6221 |
33517-33521 |
IN |
denotes |
from |
T6222 |
33522-33531 |
JJ |
denotes |
autosomal |
T6223 |
33542-33549 |
NN |
denotes |
disease |
T6224 |
33532-33541 |
JJ |
denotes |
recessive |
T6225 |
33550-33552 |
IN |
denotes |
to |
T6226 |
33553-33559 |
JJ |
denotes |
normal |
T6227 |
33571-33580 |
NN |
denotes |
diversity |
T6228 |
33560-33570 |
JJ |
denotes |
phenotypic |
T6229 |
33581-33583 |
IN |
denotes |
in |
T6230 |
33584-33591 |
NNS |
denotes |
mammals |
T6231 |
33591-33592 |
. |
denotes |
. |
T6232 |
33592-33769 |
sentence |
denotes |
Extension of the above concept implies that recessive mutations can enter evolutionary selection in F1 provided that the second allele carries a different recessive alteration. |
T6233 |
33593-33602 |
NN |
denotes |
Extension |
T6234 |
33624-33631 |
VBZ |
denotes |
implies |
T6235 |
33603-33605 |
IN |
denotes |
of |
T6236 |
33606-33609 |
DT |
denotes |
the |
T6237 |
33616-33623 |
NN |
denotes |
concept |
T6238 |
33610-33615 |
JJ |
denotes |
above |
T6239 |
33632-33636 |
IN |
denotes |
that |
T6240 |
33661-33666 |
VB |
denotes |
enter |
T6241 |
33637-33646 |
JJ |
denotes |
recessive |
T6242 |
33647-33656 |
NNS |
denotes |
mutations |
T6243 |
33657-33660 |
MD |
denotes |
can |
T6244 |
33667-33679 |
JJ |
denotes |
evolutionary |
T6245 |
33680-33689 |
NN |
denotes |
selection |
T6246 |
33690-33692 |
IN |
denotes |
in |
T6247 |
33693-33695 |
NN |
denotes |
F1 |
T6248 |
33696-33704 |
VBN |
denotes |
provided |
T6249 |
33705-33709 |
IN |
denotes |
that |
T6250 |
33728-33735 |
VBZ |
denotes |
carries |
T6251 |
33710-33713 |
DT |
denotes |
the |
T6252 |
33721-33727 |
NN |
denotes |
allele |
T6253 |
33714-33720 |
JJ |
denotes |
second |
T6254 |
33736-33737 |
DT |
denotes |
a |
T6255 |
33758-33768 |
NN |
denotes |
alteration |
T6256 |
33738-33747 |
JJ |
denotes |
different |
T6257 |
33748-33757 |
JJ |
denotes |
recessive |
T6258 |
33768-33769 |
. |
denotes |
. |
T6259 |
33769-33966 |
sentence |
denotes |
Finally, our data highlight the potential of clinically relevant alleles previously designated as null, with little or no detectable expression or activity, to nonetheless contribute to phenotype. |
T6260 |
33770-33777 |
RB |
denotes |
Finally |
T6261 |
33788-33797 |
VBP |
denotes |
highlight |
T6262 |
33777-33779 |
, |
denotes |
, |
T6263 |
33779-33782 |
PRP$ |
denotes |
our |
T6264 |
33783-33787 |
NNS |
denotes |
data |
T6265 |
33798-33801 |
DT |
denotes |
the |
T6266 |
33802-33811 |
NN |
denotes |
potential |
T6267 |
33812-33814 |
IN |
denotes |
of |
T6268 |
33815-33825 |
RB |
denotes |
clinically |
T6269 |
33826-33834 |
JJ |
denotes |
relevant |
T6270 |
33835-33842 |
NNS |
denotes |
alleles |
T6271 |
33843-33853 |
RB |
denotes |
previously |
T6272 |
33854-33864 |
VBN |
denotes |
designated |
T6273 |
33865-33867 |
IN |
denotes |
as |
T6274 |
33868-33872 |
JJ |
denotes |
null |
T6275 |
33872-33874 |
, |
denotes |
, |
T6276 |
33874-33878 |
IN |
denotes |
with |
T6277 |
33879-33885 |
JJ |
denotes |
little |
T6278 |
33903-33913 |
NN |
denotes |
expression |
T6279 |
33886-33888 |
CC |
denotes |
or |
T6280 |
33889-33891 |
DT |
denotes |
no |
T6281 |
33892-33902 |
JJ |
denotes |
detectable |
T6282 |
33914-33916 |
CC |
denotes |
or |
T6283 |
33917-33925 |
NN |
denotes |
activity |
T6284 |
33925-33927 |
, |
denotes |
, |
T6285 |
33927-33929 |
TO |
denotes |
to |
T6286 |
33942-33952 |
VB |
denotes |
contribute |
T6287 |
33930-33941 |
RB |
denotes |
nonetheless |
T6288 |
33953-33955 |
IN |
denotes |
to |
T6289 |
33956-33965 |
NN |
denotes |
phenotype |
T6290 |
33965-33966 |
. |
denotes |
. |
T6364 |
33991-34001 |
NN |
denotes |
Derivation |
T6365 |
34002-34005 |
CC |
denotes |
and |
T6366 |
34006-34014 |
NN |
denotes |
analysis |
T6367 |
34015-34017 |
IN |
denotes |
of |
T6368 |
34018-34024 |
JJ |
denotes |
mutant |
T6369 |
34025-34029 |
NNS |
denotes |
mice |
T6370 |
34029-34030 |
. |
denotes |
. |
T6371 |
34030-34120 |
sentence |
denotes |
Generation of XpdTTD (XPDR722W) and XpdTTD/KO mice has been described previously [21,22]. |
T6372 |
34031-34041 |
NN |
denotes |
Generation |
T6373 |
34091-34100 |
VBN |
denotes |
described |
T6374 |
34042-34044 |
IN |
denotes |
of |
T6375 |
34045-34051 |
NN |
denotes |
XpdTTD |
T6376 |
34077-34081 |
NNS |
denotes |
mice |
T6377 |
34052-34053 |
-LRB- |
denotes |
( |
T6378 |
34053-34061 |
NN |
denotes |
XPDR722W |
T6379 |
34061-34062 |
-RRB- |
denotes |
) |
T6380 |
34063-34066 |
CC |
denotes |
and |
T6381 |
34067-34073 |
NN |
denotes |
XpdTTD |
T6382 |
34074-34076 |
NN |
denotes |
KO |
T6383 |
34073-34074 |
HYPH |
denotes |
/ |
T6384 |
34082-34085 |
VBZ |
denotes |
has |
T6385 |
34086-34090 |
VBN |
denotes |
been |
T6386 |
34101-34111 |
RB |
denotes |
previously |
T6387 |
34112-34113 |
-LRB- |
denotes |
[ |
T6388 |
34116-34118 |
CD |
denotes |
22 |
T6389 |
34113-34115 |
CD |
denotes |
21 |
T6390 |
34115-34116 |
, |
denotes |
, |
T6391 |
34118-34119 |
-RRB- |
denotes |
] |
T6392 |
34119-34120 |
. |
denotes |
. |
T6393 |
34120-34309 |
sentence |
denotes |
A detailed description of the generation of targeting constructs for Xpd†XPCS and Xpd †XP alleles carrying mutations encoding the G602D and R683W alterations will be provided upon request. |
T6394 |
34121-34122 |
DT |
denotes |
A |
T6395 |
34132-34143 |
NN |
denotes |
description |
T6396 |
34123-34131 |
JJ |
denotes |
detailed |
T6397 |
34287-34295 |
VBN |
denotes |
provided |
T6398 |
34144-34146 |
IN |
denotes |
of |
T6399 |
34147-34150 |
DT |
denotes |
the |
T6400 |
34151-34161 |
NN |
denotes |
generation |
T6401 |
34162-34164 |
IN |
denotes |
of |
T6402 |
34165-34174 |
VBG |
denotes |
targeting |
T6403 |
34175-34185 |
NNS |
denotes |
constructs |
T6404 |
34186-34189 |
IN |
denotes |
for |
T6405 |
34190-34198 |
NN |
denotes |
Xpd†XPCS |
T6406 |
34211-34218 |
NNS |
denotes |
alleles |
T6407 |
34199-34202 |
CC |
denotes |
and |
T6408 |
34203-34210 |
NN |
denotes |
Xpd †XP |
T6409 |
34219-34227 |
VBG |
denotes |
carrying |
T6410 |
34228-34237 |
NNS |
denotes |
mutations |
T6411 |
34238-34246 |
VBG |
denotes |
encoding |
T6412 |
34247-34250 |
DT |
denotes |
the |
T6413 |
34267-34278 |
NNS |
denotes |
alterations |
T6414 |
34251-34256 |
NN |
denotes |
G602D |
T6415 |
34257-34260 |
CC |
denotes |
and |
T6416 |
34261-34266 |
NN |
denotes |
R683W |
T6417 |
34279-34283 |
MD |
denotes |
will |
T6418 |
34284-34286 |
VB |
denotes |
be |
T6419 |
34296-34300 |
IN |
denotes |
upon |
T6420 |
34301-34308 |
NN |
denotes |
request |
T6421 |
34308-34309 |
. |
denotes |
. |
T6422 |
34309-34404 |
sentence |
denotes |
Chimeric mice and mouse embryonic fibroblasts were generated according to standard procedures. |
T6423 |
34310-34318 |
JJ |
denotes |
Chimeric |
T6424 |
34344-34355 |
NNS |
denotes |
fibroblasts |
T6425 |
34319-34323 |
NNS |
denotes |
mice |
T6426 |
34324-34327 |
CC |
denotes |
and |
T6427 |
34328-34333 |
NN |
denotes |
mouse |
T6428 |
34334-34343 |
JJ |
denotes |
embryonic |
T6429 |
34361-34370 |
VBN |
denotes |
generated |
T6430 |
34356-34360 |
VBD |
denotes |
were |
T6431 |
34371-34380 |
VBG |
denotes |
according |
T6432 |
34381-34383 |
IN |
denotes |
to |
T6433 |
34384-34392 |
JJ |
denotes |
standard |
T6434 |
34393-34403 |
NNS |
denotes |
procedures |
T6435 |
34403-34404 |
. |
denotes |
. |
T6436 |
34404-34484 |
sentence |
denotes |
Haematoxylin and eosin staining was performed according to standard procedures. |
T6437 |
34405-34417 |
NN |
denotes |
Haematoxylin |
T6438 |
34428-34436 |
NN |
denotes |
staining |
T6439 |
34418-34421 |
CC |
denotes |
and |
T6440 |
34422-34427 |
NN |
denotes |
eosin |
T6441 |
34441-34450 |
VBN |
denotes |
performed |
T6442 |
34437-34440 |
VBD |
denotes |
was |
T6443 |
34451-34460 |
VBG |
denotes |
according |
T6444 |
34461-34463 |
IN |
denotes |
to |
T6445 |
34464-34472 |
JJ |
denotes |
standard |
T6446 |
34473-34483 |
NNS |
denotes |
procedures |
T6447 |
34483-34484 |
. |
denotes |
. |
T6448 |
34484-34540 |
sentence |
denotes |
Amino acid analysis was conducted as described in [21]. |
T6449 |
34485-34490 |
NN |
denotes |
Amino |
T6450 |
34491-34495 |
NN |
denotes |
acid |
T6451 |
34496-34504 |
NN |
denotes |
analysis |
T6452 |
34509-34518 |
VBN |
denotes |
conducted |
T6453 |
34505-34508 |
VBD |
denotes |
was |
T6454 |
34519-34521 |
IN |
denotes |
as |
T6455 |
34522-34531 |
VBN |
denotes |
described |
T6456 |
34532-34534 |
IN |
denotes |
in |
T6457 |
34535-34536 |
-LRB- |
denotes |
[ |
T6458 |
34536-34538 |
CD |
denotes |
21 |
T6459 |
34538-34539 |
-RRB- |
denotes |
] |
T6460 |
34539-34540 |
. |
denotes |
. |
T6461 |
34540-34637 |
sentence |
denotes |
Blood values were analysed using Animal Blood Counter Vet (ABX Diagnostix, Montpellier, France). |
T6462 |
34541-34546 |
NN |
denotes |
Blood |
T6463 |
34547-34553 |
NNS |
denotes |
values |
T6464 |
34559-34567 |
VBN |
denotes |
analysed |
T6465 |
34554-34558 |
VBD |
denotes |
were |
T6466 |
34568-34573 |
VBG |
denotes |
using |
T6467 |
34574-34580 |
NN |
denotes |
Animal |
T6468 |
34595-34598 |
NN |
denotes |
Vet |
T6469 |
34581-34586 |
NN |
denotes |
Blood |
T6470 |
34587-34594 |
JJ |
denotes |
Counter |
T6471 |
34599-34600 |
-LRB- |
denotes |
( |
T6472 |
34604-34614 |
NNP |
denotes |
Diagnostix |
T6473 |
34600-34603 |
NNP |
denotes |
ABX |
T6474 |
34614-34616 |
, |
denotes |
, |
T6475 |
34616-34627 |
NNP |
denotes |
Montpellier |
T6476 |
34627-34629 |
, |
denotes |
, |
T6477 |
34629-34635 |
NNP |
denotes |
France |
T6478 |
34635-34636 |
-RRB- |
denotes |
) |
T6479 |
34636-34637 |
. |
denotes |
. |
T6480 |
34637-34732 |
sentence |
denotes |
Radiographs were taken, and relative bone mineral density was calculated as described in [15]. |
T6481 |
34638-34649 |
NNS |
denotes |
Radiographs |
T6482 |
34655-34660 |
VBN |
denotes |
taken |
T6483 |
34650-34654 |
VBD |
denotes |
were |
T6484 |
34660-34662 |
, |
denotes |
, |
T6485 |
34662-34665 |
CC |
denotes |
and |
T6486 |
34666-34674 |
JJ |
denotes |
relative |
T6487 |
34688-34695 |
NN |
denotes |
density |
T6488 |
34675-34679 |
NN |
denotes |
bone |
T6489 |
34680-34687 |
NN |
denotes |
mineral |
T6490 |
34700-34710 |
VBN |
denotes |
calculated |
T6491 |
34696-34699 |
VBD |
denotes |
was |
T6492 |
34711-34713 |
IN |
denotes |
as |
T6493 |
34714-34723 |
VBN |
denotes |
described |
T6494 |
34724-34726 |
IN |
denotes |
in |
T6495 |
34727-34728 |
-LRB- |
denotes |
[ |
T6496 |
34728-34730 |
CD |
denotes |
15 |
T6497 |
34730-34731 |
-RRB- |
denotes |
] |
T6498 |
34731-34732 |
. |
denotes |
. |
T6499 |
34732-34823 |
sentence |
denotes |
Mice used in this study were in a 129Ola/C57BL6 mixed background unless noted differently. |
T6500 |
34733-34737 |
NNS |
denotes |
Mice |
T6501 |
34757-34761 |
VBD |
denotes |
were |
T6502 |
34738-34742 |
VBN |
denotes |
used |
T6503 |
34743-34745 |
IN |
denotes |
in |
T6504 |
34746-34750 |
DT |
denotes |
this |
T6505 |
34751-34756 |
NN |
denotes |
study |
T6506 |
34762-34764 |
IN |
denotes |
in |
T6507 |
34765-34766 |
DT |
denotes |
a |
T6508 |
34787-34797 |
NN |
denotes |
background |
T6509 |
34767-34773 |
NN |
denotes |
129Ola |
T6510 |
34774-34780 |
NN |
denotes |
C57BL6 |
T6511 |
34773-34774 |
HYPH |
denotes |
/ |
T6512 |
34781-34786 |
JJ |
denotes |
mixed |
T6513 |
34798-34804 |
IN |
denotes |
unless |
T6514 |
34805-34810 |
VBN |
denotes |
noted |
T6515 |
34811-34822 |
RB |
denotes |
differently |
T6516 |
34822-34823 |
. |
denotes |
. |
T6517 |
34823-35050 |
sentence |
denotes |
All experiments involving mice were judged and approved by the national committee for genetic identification of organisms and the animal ethical committee, and were conducted according to national and international guidelines. |
T6518 |
34824-34827 |
DT |
denotes |
All |
T6519 |
34828-34839 |
NNS |
denotes |
experiments |
T6520 |
34860-34866 |
VBN |
denotes |
judged |
T6521 |
34840-34849 |
VBG |
denotes |
involving |
T6522 |
34850-34854 |
NNS |
denotes |
mice |
T6523 |
34855-34859 |
VBD |
denotes |
were |
T6524 |
34867-34870 |
CC |
denotes |
and |
T6525 |
34871-34879 |
VBN |
denotes |
approved |
T6526 |
34880-34882 |
IN |
denotes |
by |
T6527 |
34883-34886 |
DT |
denotes |
the |
T6528 |
34896-34905 |
NN |
denotes |
committee |
T6529 |
34887-34895 |
JJ |
denotes |
national |
T6530 |
34906-34909 |
IN |
denotes |
for |
T6531 |
34910-34917 |
JJ |
denotes |
genetic |
T6532 |
34918-34932 |
NN |
denotes |
identification |
T6533 |
34933-34935 |
IN |
denotes |
of |
T6534 |
34936-34945 |
NNS |
denotes |
organisms |
T6535 |
34946-34949 |
CC |
denotes |
and |
T6536 |
34950-34953 |
DT |
denotes |
the |
T6537 |
34969-34978 |
NN |
denotes |
committee |
T6538 |
34954-34960 |
NN |
denotes |
animal |
T6539 |
34961-34968 |
JJ |
denotes |
ethical |
T6540 |
34978-34980 |
, |
denotes |
, |
T6541 |
34980-34983 |
CC |
denotes |
and |
T6542 |
34984-34988 |
VBD |
denotes |
were |
T6543 |
34989-34998 |
VBN |
denotes |
conducted |
T6544 |
34999-35008 |
VBG |
denotes |
according |
T6545 |
35009-35011 |
IN |
denotes |
to |
T6546 |
35012-35020 |
JJ |
denotes |
national |
T6547 |
35039-35049 |
NNS |
denotes |
guidelines |
T6548 |
35021-35024 |
CC |
denotes |
and |
T6549 |
35025-35038 |
JJ |
denotes |
international |
T6550 |
35049-35050 |
. |
denotes |
. |
T6587 |
35052-35054 |
NN |
denotes |
UV |
T6588 |
35055-35066 |
NN |
denotes |
sensitivity |
T6589 |
35066-35068 |
, |
denotes |
, |
T6590 |
35068-35070 |
NN |
denotes |
UV |
T6591 |
35071-35074 |
NN |
denotes |
UDS |
T6592 |
35070-35071 |
HYPH |
denotes |
- |
T6593 |
35112-35120 |
NN |
denotes |
activity |
T6594 |
35074-35076 |
, |
denotes |
, |
T6595 |
35076-35078 |
NN |
denotes |
UV |
T6596 |
35079-35082 |
NN |
denotes |
RRS |
T6597 |
35078-35079 |
HYPH |
denotes |
- |
T6598 |
35082-35084 |
, |
denotes |
, |
T6599 |
35084-35087 |
CC |
denotes |
and |
T6600 |
35088-35093 |
NN |
denotes |
TFIIH |
T6601 |
35094-35102 |
NN |
denotes |
incision |
T6602 |
35103-35111 |
NN |
denotes |
excision |
T6603 |
35102-35103 |
HYPH |
denotes |
/ |
T6604 |
35120-35121 |
. |
denotes |
. |
T6605 |
35121-35208 |
sentence |
denotes |
UV survival, UV-UDS, and UV-RRS assays were performed as described previously [21,30]. |
T6606 |
35122-35124 |
NN |
denotes |
UV |
T6607 |
35125-35133 |
NN |
denotes |
survival |
T6608 |
35154-35160 |
NNS |
denotes |
assays |
T6609 |
35133-35135 |
, |
denotes |
, |
T6610 |
35135-35137 |
NN |
denotes |
UV |
T6611 |
35138-35141 |
NN |
denotes |
UDS |
T6612 |
35137-35138 |
HYPH |
denotes |
- |
T6613 |
35141-35143 |
, |
denotes |
, |
T6614 |
35143-35146 |
CC |
denotes |
and |
T6615 |
35147-35149 |
NN |
denotes |
UV |
T6616 |
35150-35153 |
NN |
denotes |
RRS |
T6617 |
35149-35150 |
HYPH |
denotes |
- |
T6618 |
35166-35175 |
VBN |
denotes |
performed |
T6619 |
35161-35165 |
VBD |
denotes |
were |
T6620 |
35176-35178 |
IN |
denotes |
as |
T6621 |
35179-35188 |
VBN |
denotes |
described |
T6622 |
35189-35199 |
RB |
denotes |
previously |
T6623 |
35200-35201 |
-LRB- |
denotes |
[ |
T6624 |
35204-35206 |
CD |
denotes |
30 |
T6625 |
35201-35203 |
CD |
denotes |
21 |
T6626 |
35203-35204 |
, |
denotes |
, |
T6627 |
35206-35207 |
-RRB- |
denotes |
] |
T6628 |
35207-35208 |
. |
denotes |
. |
T6629 |
35208-35367 |
sentence |
denotes |
For UV-RRS, average values from the representative experiment containing two wt, three XpdTTD/TTD, two XpdTTD/XPCS, and one XpdTTD/XP cell line are presented. |
T6630 |
35209-35212 |
IN |
denotes |
For |
T6631 |
35357-35366 |
VBN |
denotes |
presented |
T6632 |
35213-35215 |
NN |
denotes |
UV |
T6633 |
35216-35219 |
NN |
denotes |
RRS |
T6634 |
35215-35216 |
HYPH |
denotes |
- |
T6635 |
35219-35221 |
, |
denotes |
, |
T6636 |
35221-35228 |
JJ |
denotes |
average |
T6637 |
35229-35235 |
NNS |
denotes |
values |
T6638 |
35236-35240 |
IN |
denotes |
from |
T6639 |
35241-35244 |
DT |
denotes |
the |
T6640 |
35260-35270 |
NN |
denotes |
experiment |
T6641 |
35245-35259 |
JJ |
denotes |
representative |
T6642 |
35271-35281 |
VBG |
denotes |
containing |
T6643 |
35282-35285 |
CD |
denotes |
two |
T6644 |
35286-35288 |
NN |
denotes |
wt |
T6645 |
35348-35352 |
NN |
denotes |
line |
T6646 |
35288-35290 |
, |
denotes |
, |
T6647 |
35290-35295 |
CD |
denotes |
three |
T6648 |
35303-35306 |
NN |
denotes |
TTD |
T6649 |
35296-35302 |
NN |
denotes |
XpdTTD |
T6650 |
35302-35303 |
HYPH |
denotes |
/ |
T6651 |
35306-35308 |
, |
denotes |
, |
T6652 |
35308-35311 |
CD |
denotes |
two |
T6653 |
35319-35323 |
NN |
denotes |
XPCS |
T6654 |
35312-35318 |
NN |
denotes |
XpdTTD |
T6655 |
35318-35319 |
HYPH |
denotes |
/ |
T6656 |
35323-35325 |
, |
denotes |
, |
T6657 |
35325-35328 |
CC |
denotes |
and |
T6658 |
35329-35332 |
CD |
denotes |
one |
T6659 |
35340-35342 |
NN |
denotes |
XP |
T6660 |
35333-35339 |
NN |
denotes |
XpdTTD |
T6661 |
35339-35340 |
HYPH |
denotes |
/ |
T6662 |
35343-35347 |
NN |
denotes |
cell |
T6663 |
35353-35356 |
VBP |
denotes |
are |
T6664 |
35366-35367 |
. |
denotes |
. |
T6665 |
35367-35615 |
sentence |
denotes |
The ~48% UV-UDS value presented in this study for XpdTTD/TTD cells differs from our previously published data of 25% UV-UDS [21], possibly because of the high variability intrinsic to the assay or routine variations in the cell culture conditions. |
T6666 |
35368-35371 |
DT |
denotes |
The |
T6667 |
35384-35389 |
NN |
denotes |
value |
T6668 |
35372-35373 |
SYM |
denotes |
~ |
T6669 |
35373-35375 |
CD |
denotes |
48 |
T6670 |
35375-35376 |
NN |
denotes |
% |
T6671 |
35377-35379 |
NN |
denotes |
UV |
T6672 |
35380-35383 |
NN |
denotes |
UDS |
T6673 |
35379-35380 |
HYPH |
denotes |
- |
T6674 |
35435-35442 |
VBZ |
denotes |
differs |
T6675 |
35390-35399 |
VBN |
denotes |
presented |
T6676 |
35400-35402 |
IN |
denotes |
in |
T6677 |
35403-35407 |
DT |
denotes |
this |
T6678 |
35408-35413 |
NN |
denotes |
study |
T6679 |
35414-35417 |
IN |
denotes |
for |
T6680 |
35418-35424 |
NN |
denotes |
XpdTTD |
T6681 |
35425-35428 |
NN |
denotes |
TTD |
T6682 |
35424-35425 |
HYPH |
denotes |
/ |
T6683 |
35429-35434 |
NNS |
denotes |
cells |
T6684 |
35443-35447 |
IN |
denotes |
from |
T6685 |
35448-35451 |
PRP$ |
denotes |
our |
T6686 |
35473-35477 |
NNS |
denotes |
data |
T6687 |
35452-35462 |
RB |
denotes |
previously |
T6688 |
35463-35472 |
VBN |
denotes |
published |
T6689 |
35478-35480 |
IN |
denotes |
of |
T6690 |
35481-35483 |
CD |
denotes |
25 |
T6691 |
35483-35484 |
NN |
denotes |
% |
T6692 |
35488-35491 |
NN |
denotes |
UDS |
T6693 |
35485-35487 |
NN |
denotes |
UV |
T6694 |
35487-35488 |
HYPH |
denotes |
- |
T6695 |
35492-35493 |
-LRB- |
denotes |
[ |
T6696 |
35493-35495 |
CD |
denotes |
21 |
T6697 |
35495-35496 |
-RRB- |
denotes |
] |
T6698 |
35496-35498 |
, |
denotes |
, |
T6699 |
35498-35506 |
RB |
denotes |
possibly |
T6700 |
35507-35514 |
IN |
denotes |
because |
T6701 |
35515-35517 |
IN |
denotes |
of |
T6702 |
35518-35521 |
DT |
denotes |
the |
T6703 |
35527-35538 |
NN |
denotes |
variability |
T6704 |
35522-35526 |
JJ |
denotes |
high |
T6705 |
35539-35548 |
JJ |
denotes |
intrinsic |
T6706 |
35549-35551 |
IN |
denotes |
to |
T6707 |
35552-35555 |
DT |
denotes |
the |
T6708 |
35556-35561 |
NN |
denotes |
assay |
T6709 |
35562-35564 |
CC |
denotes |
or |
T6710 |
35565-35572 |
JJ |
denotes |
routine |
T6711 |
35573-35583 |
NNS |
denotes |
variations |
T6712 |
35584-35586 |
IN |
denotes |
in |
T6713 |
35587-35590 |
DT |
denotes |
the |
T6714 |
35604-35614 |
NNS |
denotes |
conditions |
T6715 |
35591-35595 |
NN |
denotes |
cell |
T6716 |
35596-35603 |
NN |
denotes |
culture |
T6717 |
35614-35615 |
. |
denotes |
. |
T6718 |
35615-35730 |
sentence |
denotes |
For the incision/excision activity assay, recombinant TFIIH was prepared and assayed as described previously [27]. |
T6719 |
35616-35619 |
IN |
denotes |
For |
T6720 |
35680-35688 |
VBN |
denotes |
prepared |
T6721 |
35620-35623 |
DT |
denotes |
the |
T6722 |
35651-35656 |
NN |
denotes |
assay |
T6723 |
35624-35632 |
NN |
denotes |
incision |
T6724 |
35633-35641 |
NN |
denotes |
excision |
T6725 |
35632-35633 |
HYPH |
denotes |
/ |
T6726 |
35642-35650 |
NN |
denotes |
activity |
T6727 |
35656-35658 |
, |
denotes |
, |
T6728 |
35658-35669 |
JJ |
denotes |
recombinant |
T6729 |
35670-35675 |
NN |
denotes |
TFIIH |
T6730 |
35676-35679 |
VBD |
denotes |
was |
T6731 |
35689-35692 |
CC |
denotes |
and |
T6732 |
35693-35700 |
VBN |
denotes |
assayed |
T6733 |
35701-35703 |
IN |
denotes |
as |
T6734 |
35704-35713 |
VBN |
denotes |
described |
T6735 |
35714-35724 |
RB |
denotes |
previously |
T6736 |
35725-35726 |
-LRB- |
denotes |
[ |
T6737 |
35726-35728 |
CD |
denotes |
27 |
T6738 |
35728-35729 |
-RRB- |
denotes |
] |
T6739 |
35729-35730 |
. |
denotes |
. |
T6809 |
35965-36162 |
sentence |
denotes |
Two or more cell lines per genotype (except for the XpdTTD/†XP cells, in which only one cell line was used in repeated experiments) were used, and experiments were repeated 2–6 times per genotype. |
T6810 |
35966-35969 |
CD |
denotes |
Two |
T6811 |
35983-35988 |
NNS |
denotes |
lines |
T6812 |
35970-35972 |
CC |
denotes |
or |
T6813 |
35973-35977 |
JJR |
denotes |
more |
T6814 |
35978-35982 |
NN |
denotes |
cell |
T6815 |
36103-36107 |
VBN |
denotes |
used |
T6816 |
35989-35992 |
IN |
denotes |
per |
T6817 |
35993-36001 |
NN |
denotes |
genotype |
T6818 |
36002-36003 |
-LRB- |
denotes |
( |
T6819 |
36003-36009 |
IN |
denotes |
except |
T6820 |
36010-36013 |
IN |
denotes |
for |
T6821 |
36014-36017 |
DT |
denotes |
the |
T6822 |
36029-36034 |
NNS |
denotes |
cells |
T6823 |
36018-36024 |
NN |
denotes |
XpdTTD |
T6824 |
36025-36028 |
NN |
denotes |
†XP |
T6825 |
36024-36025 |
HYPH |
denotes |
/ |
T6826 |
36034-36036 |
, |
denotes |
, |
T6827 |
36036-36038 |
IN |
denotes |
in |
T6828 |
36068-36072 |
VBN |
denotes |
used |
T6829 |
36039-36044 |
WDT |
denotes |
which |
T6830 |
36045-36049 |
RB |
denotes |
only |
T6831 |
36059-36063 |
NN |
denotes |
line |
T6832 |
36050-36053 |
CD |
denotes |
one |
T6833 |
36054-36058 |
NN |
denotes |
cell |
T6834 |
36064-36067 |
VBD |
denotes |
was |
T6835 |
36073-36075 |
IN |
denotes |
in |
T6836 |
36076-36084 |
VBN |
denotes |
repeated |
T6837 |
36085-36096 |
NNS |
denotes |
experiments |
T6838 |
36096-36097 |
-RRB- |
denotes |
) |
T6839 |
36098-36102 |
VBD |
denotes |
were |
T6840 |
36107-36109 |
, |
denotes |
, |
T6841 |
36109-36112 |
CC |
denotes |
and |
T6842 |
36113-36124 |
NNS |
denotes |
experiments |
T6843 |
36130-36138 |
VBN |
denotes |
repeated |
T6844 |
36125-36129 |
VBD |
denotes |
were |
T6845 |
36139-36140 |
CD |
denotes |
2 |
T6846 |
36141-36142 |
CD |
denotes |
6 |
T6847 |
36140-36141 |
HYPH |
denotes |
– |
T6848 |
36143-36148 |
NNS |
denotes |
times |
T6849 |
36149-36152 |
IN |
denotes |
per |
T6850 |
36153-36161 |
NN |
denotes |
genotype |
T6851 |
36161-36162 |
. |
denotes |
. |
T7095 |
7546-7555 |
NN |
denotes |
Targeting |
T7096 |
7556-7558 |
IN |
denotes |
of |
T7097 |
7559-7562 |
DT |
denotes |
the |
T7098 |
7573-7577 |
NN |
denotes |
Gene |
T7099 |
7563-7568 |
NN |
denotes |
Mouse |
T7100 |
7569-7572 |
NN |
denotes |
Xpd |
T7101 |
7577-7698 |
sentence |
denotes |
(A) Schematic representation of the genomic structure and partial restriction map of the wt and targeted mouse Xpd loci. |
T7102 |
7578-7579 |
-LRB- |
denotes |
( |
T7103 |
7579-7580 |
LS |
denotes |
A |
T7104 |
7592-7606 |
NN |
denotes |
representation |
T7105 |
7580-7581 |
-RRB- |
denotes |
) |
T7106 |
7582-7591 |
JJ |
denotes |
Schematic |
T7107 |
7607-7609 |
IN |
denotes |
of |
T7108 |
7610-7613 |
DT |
denotes |
the |
T7109 |
7622-7631 |
NN |
denotes |
structure |
T7110 |
7614-7621 |
JJ |
denotes |
genomic |
T7111 |
7632-7635 |
CC |
denotes |
and |
T7112 |
7636-7643 |
JJ |
denotes |
partial |
T7113 |
7656-7659 |
NN |
denotes |
map |
T7114 |
7644-7655 |
NN |
denotes |
restriction |
T7115 |
7660-7662 |
IN |
denotes |
of |
T7116 |
7663-7666 |
DT |
denotes |
the |
T7117 |
7693-7697 |
NNS |
denotes |
loci |
T7118 |
7667-7669 |
NN |
denotes |
wt |
T7119 |
7670-7673 |
CC |
denotes |
and |
T7120 |
7674-7682 |
VBN |
denotes |
targeted |
T7121 |
7683-7688 |
NN |
denotes |
mouse |
T7122 |
7689-7692 |
NN |
denotes |
Xpd |
T7123 |
7697-7698 |
. |
denotes |
. |
T7124 |
7698-7823 |
sentence |
denotes |
For the wt Xpd allele, shaded boxes represent coding regions of exons 12 and 19–23; the 3′UTR is represented by an open box. |
T7125 |
7699-7702 |
IN |
denotes |
For |
T7126 |
7796-7807 |
VBN |
denotes |
represented |
T7127 |
7703-7706 |
DT |
denotes |
the |
T7128 |
7714-7720 |
NN |
denotes |
allele |
T7129 |
7707-7709 |
NN |
denotes |
wt |
T7130 |
7710-7713 |
NN |
denotes |
Xpd |
T7131 |
7720-7722 |
, |
denotes |
, |
T7132 |
7722-7728 |
JJ |
denotes |
shaded |
T7133 |
7729-7734 |
NNS |
denotes |
boxes |
T7134 |
7735-7744 |
VBP |
denotes |
represent |
T7135 |
7745-7751 |
VBG |
denotes |
coding |
T7136 |
7752-7759 |
NNS |
denotes |
regions |
T7137 |
7760-7762 |
IN |
denotes |
of |
T7138 |
7763-7768 |
NNS |
denotes |
exons |
T7139 |
7769-7771 |
CD |
denotes |
12 |
T7140 |
7772-7775 |
CC |
denotes |
and |
T7141 |
7776-7778 |
CD |
denotes |
19 |
T7142 |
7778-7779 |
SYM |
denotes |
– |
T7143 |
7779-7781 |
CD |
denotes |
23 |
T7144 |
7781-7782 |
: |
denotes |
; |
T7145 |
7783-7786 |
DT |
denotes |
the |
T7146 |
7789-7792 |
NN |
denotes |
UTR |
T7147 |
7787-7788 |
CD |
denotes |
3 |
T7148 |
7788-7789 |
SYM |
denotes |
′ |
T7149 |
7793-7795 |
VBZ |
denotes |
is |
T7150 |
7808-7810 |
IN |
denotes |
by |
T7151 |
7811-7813 |
DT |
denotes |
an |
T7152 |
7819-7822 |
NN |
denotes |
box |
T7153 |
7814-7818 |
JJ |
denotes |
open |
T7154 |
7822-7823 |
. |
denotes |
. |
T7155 |
7823-7911 |
sentence |
denotes |
TGA indicates the translational stop codon; PolyA indicates the polyadenylation signal. |
T7156 |
7824-7827 |
NN |
denotes |
TGA |
T7157 |
7828-7837 |
VBZ |
denotes |
indicates |
T7158 |
7874-7883 |
VBZ |
denotes |
indicates |
T7159 |
7838-7841 |
DT |
denotes |
the |
T7160 |
7861-7866 |
NN |
denotes |
codon |
T7161 |
7842-7855 |
JJ |
denotes |
translational |
T7162 |
7856-7860 |
NN |
denotes |
stop |
T7163 |
7866-7867 |
: |
denotes |
; |
T7164 |
7868-7873 |
NN |
denotes |
PolyA |
T7165 |
7884-7887 |
DT |
denotes |
the |
T7166 |
7904-7910 |
NN |
denotes |
signal |
T7167 |
7888-7903 |
NN |
denotes |
polyadenylation |
T7168 |
7910-7911 |
. |
denotes |
. |
T7169 |
7911-8103 |
sentence |
denotes |
For the XpdTTD targeted allele, the 194–base pair (bp) human XPD cDNA fragment fused to exon 22 is indicated as a striped box including the TTD (R722W) mutation indicated by a vertical arrow. |
T7170 |
7912-7915 |
IN |
denotes |
For |
T7171 |
8011-8020 |
VBN |
denotes |
indicated |
T7172 |
7916-7919 |
DT |
denotes |
the |
T7173 |
7936-7942 |
NN |
denotes |
allele |
T7174 |
7920-7926 |
NN |
denotes |
XpdTTD |
T7175 |
7927-7935 |
VBN |
denotes |
targeted |
T7176 |
7942-7944 |
, |
denotes |
, |
T7177 |
7944-7947 |
DT |
denotes |
the |
T7178 |
7982-7990 |
NN |
denotes |
fragment |
T7179 |
7948-7951 |
CD |
denotes |
194 |
T7180 |
7957-7961 |
NN |
denotes |
pair |
T7181 |
7951-7952 |
HYPH |
denotes |
– |
T7182 |
7952-7956 |
NN |
denotes |
base |
T7183 |
7962-7963 |
-LRB- |
denotes |
( |
T7184 |
7963-7965 |
NN |
denotes |
bp |
T7185 |
7965-7966 |
-RRB- |
denotes |
) |
T7186 |
7967-7972 |
JJ |
denotes |
human |
T7187 |
7973-7976 |
NN |
denotes |
XPD |
T7188 |
7977-7981 |
NN |
denotes |
cDNA |
T7189 |
7991-7996 |
VBN |
denotes |
fused |
T7190 |
7997-7999 |
IN |
denotes |
to |
T7191 |
8000-8004 |
NN |
denotes |
exon |
T7192 |
8005-8007 |
CD |
denotes |
22 |
T7193 |
8008-8010 |
VBZ |
denotes |
is |
T7194 |
8021-8023 |
IN |
denotes |
as |
T7195 |
8024-8025 |
DT |
denotes |
a |
T7196 |
8034-8037 |
NN |
denotes |
box |
T7197 |
8026-8033 |
VBN |
denotes |
striped |
T7198 |
8038-8047 |
VBG |
denotes |
including |
T7199 |
8048-8051 |
DT |
denotes |
the |
T7200 |
8064-8072 |
NN |
denotes |
mutation |
T7201 |
8052-8055 |
NN |
denotes |
TTD |
T7202 |
8056-8057 |
-LRB- |
denotes |
( |
T7203 |
8057-8062 |
NN |
denotes |
R722W |
T7204 |
8062-8063 |
-RRB- |
denotes |
) |
T7205 |
8073-8082 |
VBN |
denotes |
indicated |
T7206 |
8083-8085 |
IN |
denotes |
by |
T7207 |
8086-8087 |
DT |
denotes |
a |
T7208 |
8097-8102 |
NN |
denotes |
arrow |
T7209 |
8088-8096 |
JJ |
denotes |
vertical |
T7210 |
8102-8103 |
. |
denotes |
. |
T7211 |
8103-8275 |
sentence |
denotes |
Chicken β-globin exons 2 and 3 including the 3′UTR are indicated as black boxes with corresponding Roman numerals followed by the β-globin polyadenylation signal (PolyA*). |
T7212 |
8104-8111 |
NN |
denotes |
Chicken |
T7213 |
8127-8128 |
CD |
denotes |
2 |
T7214 |
8112-8113 |
NN |
denotes |
β |
T7215 |
8114-8120 |
NN |
denotes |
globin |
T7216 |
8113-8114 |
HYPH |
denotes |
- |
T7217 |
8121-8126 |
NNS |
denotes |
exons |
T7218 |
8159-8168 |
VBN |
denotes |
indicated |
T7219 |
8129-8132 |
CC |
denotes |
and |
T7220 |
8133-8134 |
CD |
denotes |
3 |
T7221 |
8135-8144 |
VBG |
denotes |
including |
T7222 |
8145-8148 |
DT |
denotes |
the |
T7223 |
8151-8154 |
NN |
denotes |
UTR |
T7224 |
8149-8150 |
CD |
denotes |
3 |
T7225 |
8150-8151 |
HYPH |
denotes |
′ |
T7226 |
8155-8158 |
VBP |
denotes |
are |
T7227 |
8169-8171 |
IN |
denotes |
as |
T7228 |
8172-8177 |
JJ |
denotes |
black |
T7229 |
8178-8183 |
NNS |
denotes |
boxes |
T7230 |
8184-8188 |
IN |
denotes |
with |
T7231 |
8189-8202 |
VBG |
denotes |
corresponding |
T7232 |
8209-8217 |
NNS |
denotes |
numerals |
T7233 |
8203-8208 |
NNP |
denotes |
Roman |
T7234 |
8218-8226 |
VBN |
denotes |
followed |
T7235 |
8227-8229 |
IN |
denotes |
by |
T7236 |
8230-8233 |
DT |
denotes |
the |
T7237 |
8259-8265 |
NN |
denotes |
signal |
T7238 |
8234-8235 |
NN |
denotes |
β |
T7239 |
8236-8242 |
NN |
denotes |
globin |
T7240 |
8235-8236 |
HYPH |
denotes |
- |
T7241 |
8243-8258 |
NN |
denotes |
polyadenylation |
T7242 |
8266-8267 |
-LRB- |
denotes |
( |
T7243 |
8267-8273 |
NN |
denotes |
PolyA* |
T7244 |
8273-8274 |
-RRB- |
denotes |
) |
T7245 |
8274-8275 |
. |
denotes |
. |
T7246 |
8275-8436 |
sentence |
denotes |
For the Xpd†XP and Xpd†XPCS targeted alleles, vertical arrows indicate XPCS (G602D-encoding) and XP (R683W-encoding) mutations in exons 19 and 22, respectively. |
T7247 |
8276-8279 |
IN |
denotes |
For |
T7248 |
8338-8346 |
VBP |
denotes |
indicate |
T7249 |
8280-8283 |
DT |
denotes |
the |
T7250 |
8313-8320 |
NNS |
denotes |
alleles |
T7251 |
8284-8290 |
NN |
denotes |
Xpd†XP |
T7252 |
8291-8294 |
CC |
denotes |
and |
T7253 |
8295-8303 |
NN |
denotes |
Xpd†XPCS |
T7254 |
8304-8312 |
VBN |
denotes |
targeted |
T7255 |
8320-8322 |
, |
denotes |
, |
T7256 |
8322-8330 |
JJ |
denotes |
vertical |
T7257 |
8331-8337 |
NNS |
denotes |
arrows |
T7258 |
8347-8351 |
NN |
denotes |
XPCS |
T7259 |
8393-8402 |
NNS |
denotes |
mutations |
T7260 |
8352-8353 |
-LRB- |
denotes |
( |
T7261 |
8359-8367 |
VBG |
denotes |
encoding |
T7262 |
8353-8358 |
NN |
denotes |
G602D |
T7263 |
8358-8359 |
HYPH |
denotes |
- |
T7264 |
8367-8368 |
-RRB- |
denotes |
) |
T7265 |
8369-8372 |
CC |
denotes |
and |
T7266 |
8373-8375 |
NN |
denotes |
XP |
T7267 |
8376-8377 |
-LRB- |
denotes |
( |
T7268 |
8383-8391 |
VBG |
denotes |
encoding |
T7269 |
8377-8382 |
NN |
denotes |
R683W |
T7270 |
8382-8383 |
HYPH |
denotes |
- |
T7271 |
8391-8392 |
-RRB- |
denotes |
) |
T7272 |
8403-8405 |
IN |
denotes |
in |
T7273 |
8406-8411 |
NNS |
denotes |
exons |
T7274 |
8412-8414 |
CD |
denotes |
19 |
T7275 |
8415-8418 |
CC |
denotes |
and |
T7276 |
8419-8421 |
CD |
denotes |
22 |
T7277 |
8421-8423 |
, |
denotes |
, |
T7278 |
8423-8435 |
RB |
denotes |
respectively |
T7279 |
8435-8436 |
. |
denotes |
. |
T7280 |
8436-8529 |
sentence |
denotes |
The unique 3′ probe located outside the targeting construct is marked by a thick black line. |
T7281 |
8437-8440 |
DT |
denotes |
The |
T7282 |
8451-8456 |
NN |
denotes |
probe |
T7283 |
8441-8447 |
JJ |
denotes |
unique |
T7284 |
8448-8449 |
CD |
denotes |
3 |
T7285 |
8449-8450 |
SYM |
denotes |
′ |
T7286 |
8500-8506 |
VBN |
denotes |
marked |
T7287 |
8457-8464 |
VBN |
denotes |
located |
T7288 |
8465-8472 |
IN |
denotes |
outside |
T7289 |
8473-8476 |
DT |
denotes |
the |
T7290 |
8487-8496 |
NN |
denotes |
construct |
T7291 |
8477-8486 |
VBG |
denotes |
targeting |
T7292 |
8497-8499 |
VBZ |
denotes |
is |
T7293 |
8507-8509 |
IN |
denotes |
by |
T7294 |
8510-8511 |
DT |
denotes |
a |
T7295 |
8524-8528 |
NN |
denotes |
line |
T7296 |
8512-8517 |
JJ |
denotes |
thick |
T7297 |
8518-8523 |
JJ |
denotes |
black |
T7298 |
8528-8529 |
. |
denotes |
. |
T7299 |
8529-8609 |
sentence |
denotes |
Restriction sites: B, BamHI; C, ClaI; E, EcoRI; H, HindIII; Hp, HpaI; Sf, SfiI. |
T7300 |
8530-8541 |
NN |
denotes |
Restriction |
T7301 |
8542-8547 |
NNS |
denotes |
sites |
T7302 |
8547-8549 |
: |
denotes |
: |
T7303 |
8549-8550 |
NN |
denotes |
B |
T7304 |
8550-8552 |
, |
denotes |
, |
T7305 |
8552-8557 |
NN |
denotes |
BamHI |
T7306 |
8557-8558 |
: |
denotes |
; |
T7307 |
8559-8560 |
NN |
denotes |
C |
T7308 |
8560-8562 |
, |
denotes |
, |
T7309 |
8562-8566 |
NN |
denotes |
ClaI |
T7310 |
8566-8567 |
: |
denotes |
; |
T7311 |
8568-8569 |
NN |
denotes |
E |
T7312 |
8569-8571 |
, |
denotes |
, |
T7313 |
8571-8576 |
NN |
denotes |
EcoRI |
T7314 |
8576-8577 |
: |
denotes |
; |
T7315 |
8578-8579 |
NN |
denotes |
H |
T7316 |
8579-8581 |
, |
denotes |
, |
T7317 |
8581-8588 |
NN |
denotes |
HindIII |
T7318 |
8588-8589 |
: |
denotes |
; |
T7319 |
8590-8592 |
NN |
denotes |
Hp |
T7320 |
8592-8594 |
, |
denotes |
, |
T7321 |
8594-8598 |
NN |
denotes |
HpaI |
T7322 |
8598-8599 |
: |
denotes |
; |
T7323 |
8600-8602 |
NN |
denotes |
Sf |
T7324 |
8602-8604 |
, |
denotes |
, |
T7325 |
8604-8608 |
NN |
denotes |
SfiI |
T7326 |
8608-8609 |
. |
denotes |
. |
T7327 |
8609-8787 |
sentence |
denotes |
(B) Southern blot analysis of EcoRI-digested genomic DNA from wt, Xpd†XPCS/wt, and Xpd†XP/wt recombinant embryonic stem cell clones hybridised with the 3′ probe depicted in (A). |
T7328 |
8610-8611 |
-LRB- |
denotes |
( |
T7329 |
8611-8612 |
LS |
denotes |
B |
T7330 |
8628-8636 |
NN |
denotes |
analysis |
T7331 |
8612-8613 |
-RRB- |
denotes |
) |
T7332 |
8614-8622 |
NNP |
denotes |
Southern |
T7333 |
8623-8627 |
NN |
denotes |
blot |
T7334 |
8637-8639 |
IN |
denotes |
of |
T7335 |
8640-8645 |
NN |
denotes |
EcoRI |
T7336 |
8646-8654 |
VBN |
denotes |
digested |
T7337 |
8645-8646 |
HYPH |
denotes |
- |
T7338 |
8663-8666 |
NN |
denotes |
DNA |
T7339 |
8655-8662 |
JJ |
denotes |
genomic |
T7340 |
8667-8671 |
IN |
denotes |
from |
T7341 |
8672-8674 |
NN |
denotes |
wt |
T7342 |
8735-8741 |
NNS |
denotes |
clones |
T7343 |
8674-8676 |
, |
denotes |
, |
T7344 |
8676-8684 |
NN |
denotes |
Xpd†XPCS |
T7345 |
8685-8687 |
NN |
denotes |
wt |
T7346 |
8684-8685 |
HYPH |
denotes |
/ |
T7347 |
8687-8689 |
, |
denotes |
, |
T7348 |
8689-8692 |
CC |
denotes |
and |
T7349 |
8693-8699 |
NN |
denotes |
Xpd†XP |
T7350 |
8700-8702 |
NN |
denotes |
wt |
T7351 |
8699-8700 |
HYPH |
denotes |
/ |
T7352 |
8703-8714 |
JJ |
denotes |
recombinant |
T7353 |
8715-8724 |
JJ |
denotes |
embryonic |
T7354 |
8730-8734 |
NN |
denotes |
cell |
T7355 |
8725-8729 |
NN |
denotes |
stem |
T7356 |
8742-8752 |
VBN |
denotes |
hybridised |
T7357 |
8753-8757 |
IN |
denotes |
with |
T7358 |
8758-8761 |
DT |
denotes |
the |
T7359 |
8765-8770 |
NN |
denotes |
probe |
T7360 |
8762-8763 |
CD |
denotes |
3 |
T7361 |
8763-8764 |
SYM |
denotes |
′ |
T7362 |
8771-8779 |
VBN |
denotes |
depicted |
T7363 |
8780-8782 |
IN |
denotes |
in |
T7364 |
8783-8784 |
-LRB- |
denotes |
( |
T7365 |
8784-8785 |
NN |
denotes |
A |
T7366 |
8785-8786 |
-RRB- |
denotes |
) |
T7367 |
8786-8787 |
. |
denotes |
. |
T7368 |
8787-8913 |
sentence |
denotes |
The wt allele yields a 6.5-kilobase (kb) fragment, whereas both targeted Xpd†XP and Xpd†XPCS alleles yield a 5.1-kb fragment. |
T7369 |
8788-8791 |
DT |
denotes |
The |
T7370 |
8795-8801 |
NN |
denotes |
allele |
T7371 |
8792-8794 |
NN |
denotes |
wt |
T7372 |
8802-8808 |
VBZ |
denotes |
yields |
T7373 |
8809-8810 |
DT |
denotes |
a |
T7374 |
8829-8837 |
NN |
denotes |
fragment |
T7375 |
8811-8814 |
CD |
denotes |
6.5 |
T7376 |
8815-8823 |
NN |
denotes |
kilobase |
T7377 |
8814-8815 |
HYPH |
denotes |
- |
T7378 |
8824-8825 |
-LRB- |
denotes |
( |
T7379 |
8825-8827 |
NN |
denotes |
kb |
T7380 |
8827-8828 |
-RRB- |
denotes |
) |
T7381 |
8837-8839 |
, |
denotes |
, |
T7382 |
8839-8846 |
IN |
denotes |
whereas |
T7383 |
8889-8894 |
VBP |
denotes |
yield |
T7384 |
8847-8851 |
CC |
denotes |
both |
T7385 |
8881-8888 |
NNS |
denotes |
alleles |
T7386 |
8852-8860 |
VBN |
denotes |
targeted |
T7387 |
8861-8867 |
NN |
denotes |
Xpd†XP |
T7388 |
8868-8871 |
CC |
denotes |
and |
T7389 |
8872-8880 |
NN |
denotes |
Xpd†XPCS |
T7390 |
8895-8896 |
DT |
denotes |
a |
T7391 |
8904-8912 |
NN |
denotes |
fragment |
T7392 |
8897-8900 |
CD |
denotes |
5.1 |
T7393 |
8901-8903 |
NN |
denotes |
kb |
T7394 |
8900-8901 |
HYPH |
denotes |
- |
T7395 |
8912-8913 |
. |
denotes |
. |
T7396 |
8913-9064 |
sentence |
denotes |
(C) Genotyping of wt and targeted alleles by PCR using primers F2, R1, and mR as indicated in (A) yields fragments of 399 bp and 468 bp, respectively. |
T7397 |
8914-8915 |
-LRB- |
denotes |
( |
T7398 |
8915-8916 |
LS |
denotes |
C |
T7399 |
8918-8928 |
NN |
denotes |
Genotyping |
T7400 |
8916-8917 |
-RRB- |
denotes |
) |
T7401 |
8929-8931 |
IN |
denotes |
of |
T7402 |
8932-8934 |
NN |
denotes |
wt |
T7403 |
8948-8955 |
NNS |
denotes |
alleles |
T7404 |
8935-8938 |
CC |
denotes |
and |
T7405 |
8939-8947 |
VBN |
denotes |
targeted |
T7406 |
8956-8958 |
IN |
denotes |
by |
T7407 |
8959-8962 |
NN |
denotes |
PCR |
T7408 |
8963-8968 |
VBG |
denotes |
using |
T7409 |
8969-8976 |
NNS |
denotes |
primers |
T7410 |
8977-8979 |
NN |
denotes |
F2 |
T7411 |
8979-8981 |
, |
denotes |
, |
T7412 |
8981-8983 |
NN |
denotes |
R1 |
T7413 |
8983-8985 |
, |
denotes |
, |
T7414 |
8985-8988 |
CC |
denotes |
and |
T7415 |
8989-8991 |
NN |
denotes |
mR |
T7416 |
8992-8994 |
IN |
denotes |
as |
T7417 |
8995-9004 |
VBN |
denotes |
indicated |
T7418 |
9005-9007 |
IN |
denotes |
in |
T7419 |
9008-9009 |
-LRB- |
denotes |
( |
T7420 |
9009-9010 |
LS |
denotes |
A |
T7421 |
9019-9028 |
NNS |
denotes |
fragments |
T7422 |
9010-9011 |
-RRB- |
denotes |
) |
T7423 |
9012-9018 |
VBZ |
denotes |
yields |
T7424 |
9029-9031 |
IN |
denotes |
of |
T7425 |
9032-9035 |
CD |
denotes |
399 |
T7426 |
9036-9038 |
NN |
denotes |
bp |
T7427 |
9039-9042 |
CC |
denotes |
and |
T7428 |
9043-9046 |
CD |
denotes |
468 |
T7429 |
9047-9049 |
NN |
denotes |
bp |
T7430 |
9049-9051 |
, |
denotes |
, |
T7431 |
9051-9063 |
RB |
denotes |
respectively |
T7432 |
9063-9064 |
. |
denotes |
. |
T7433 |
9064-9308 |
sentence |
denotes |
(D) RT-PCR detection of mRNA expression originating from the targeted †XP and †XPCS alleles in embryonic stem cell clones using primers F1 (hybridising outside the targeting construct) and mR as indicated in (A) results in a 1,416-bp fragment. |
T7434 |
9065-9066 |
-LRB- |
denotes |
( |
T7435 |
9066-9067 |
LS |
denotes |
D |
T7436 |
9277-9284 |
VBZ |
denotes |
results |
T7437 |
9067-9068 |
-RRB- |
denotes |
) |
T7438 |
9069-9071 |
NN |
denotes |
RT |
T7439 |
9072-9075 |
NN |
denotes |
PCR |
T7440 |
9071-9072 |
HYPH |
denotes |
- |
T7441 |
9076-9085 |
NN |
denotes |
detection |
T7442 |
9086-9088 |
IN |
denotes |
of |
T7443 |
9089-9093 |
NN |
denotes |
mRNA |
T7444 |
9094-9104 |
NN |
denotes |
expression |
T7445 |
9105-9116 |
VBG |
denotes |
originating |
T7446 |
9117-9121 |
IN |
denotes |
from |
T7447 |
9122-9125 |
DT |
denotes |
the |
T7448 |
9149-9156 |
NNS |
denotes |
alleles |
T7449 |
9126-9134 |
VBN |
denotes |
targeted |
T7450 |
9135-9138 |
NN |
denotes |
†XP |
T7451 |
9139-9142 |
CC |
denotes |
and |
T7452 |
9143-9148 |
NN |
denotes |
†XPCS |
T7453 |
9157-9159 |
IN |
denotes |
in |
T7454 |
9160-9169 |
JJ |
denotes |
embryonic |
T7455 |
9175-9179 |
NN |
denotes |
cell |
T7456 |
9170-9174 |
NN |
denotes |
stem |
T7457 |
9180-9186 |
NNS |
denotes |
clones |
T7458 |
9187-9192 |
VBG |
denotes |
using |
T7459 |
9193-9200 |
NNS |
denotes |
primers |
T7460 |
9201-9203 |
NN |
denotes |
F1 |
T7461 |
9204-9205 |
-LRB- |
denotes |
( |
T7462 |
9205-9216 |
VBG |
denotes |
hybridising |
T7463 |
9217-9224 |
IN |
denotes |
outside |
T7464 |
9225-9228 |
DT |
denotes |
the |
T7465 |
9239-9248 |
NN |
denotes |
construct |
T7466 |
9229-9238 |
VBG |
denotes |
targeting |
T7467 |
9248-9249 |
-RRB- |
denotes |
) |
T7468 |
9250-9253 |
CC |
denotes |
and |
T7469 |
9254-9256 |
NN |
denotes |
mR |
T7470 |
9257-9259 |
IN |
denotes |
as |
T7471 |
9260-9269 |
VBN |
denotes |
indicated |
T7472 |
9270-9272 |
IN |
denotes |
in |
T7473 |
9273-9274 |
-LRB- |
denotes |
( |
T7474 |
9274-9275 |
NN |
denotes |
A |
T7475 |
9275-9276 |
-RRB- |
denotes |
) |
T7476 |
9285-9287 |
IN |
denotes |
in |
T7477 |
9288-9289 |
DT |
denotes |
a |
T7478 |
9299-9307 |
NN |
denotes |
fragment |
T7479 |
9290-9295 |
CD |
denotes |
1,416 |
T7480 |
9296-9298 |
NN |
denotes |
bp |
T7481 |
9295-9296 |
HYPH |
denotes |
- |
T7482 |
9307-9308 |
. |
denotes |
. |
T7483 |
9308-9500 |
sentence |
denotes |
(E) Northern blot analysis of total RNA isolated from testis of homozygous wt and XpdTTD/TTD, heterozygous Xpd†XPCS/wt and XpdTTD/wt, and compound heterozygous Xpd†XPCS/TTD mice as indicated. |
T7484 |
9309-9310 |
-LRB- |
denotes |
( |
T7485 |
9310-9311 |
LS |
denotes |
E |
T7486 |
9327-9335 |
NN |
denotes |
analysis |
T7487 |
9311-9312 |
-RRB- |
denotes |
) |
T7488 |
9313-9321 |
NNP |
denotes |
Northern |
T7489 |
9322-9326 |
NN |
denotes |
blot |
T7490 |
9336-9338 |
IN |
denotes |
of |
T7491 |
9339-9344 |
JJ |
denotes |
total |
T7492 |
9345-9348 |
NN |
denotes |
RNA |
T7493 |
9349-9357 |
VBN |
denotes |
isolated |
T7494 |
9358-9362 |
IN |
denotes |
from |
T7495 |
9363-9369 |
NN |
denotes |
testis |
T7496 |
9370-9372 |
IN |
denotes |
of |
T7497 |
9373-9383 |
JJ |
denotes |
homozygous |
T7498 |
9384-9386 |
NN |
denotes |
wt |
T7499 |
9482-9486 |
NNS |
denotes |
mice |
T7500 |
9387-9390 |
CC |
denotes |
and |
T7501 |
9391-9397 |
NN |
denotes |
XpdTTD |
T7502 |
9398-9401 |
NN |
denotes |
TTD |
T7503 |
9397-9398 |
HYPH |
denotes |
/ |
T7504 |
9401-9403 |
, |
denotes |
, |
T7505 |
9403-9415 |
JJ |
denotes |
heterozygous |
T7506 |
9425-9427 |
NN |
denotes |
wt |
T7507 |
9416-9424 |
NN |
denotes |
Xpd†XPCS |
T7508 |
9424-9425 |
HYPH |
denotes |
/ |
T7509 |
9428-9431 |
CC |
denotes |
and |
T7510 |
9432-9438 |
NN |
denotes |
XpdTTD |
T7511 |
9439-9441 |
NN |
denotes |
wt |
T7512 |
9438-9439 |
HYPH |
denotes |
/ |
T7513 |
9441-9443 |
, |
denotes |
, |
T7514 |
9443-9446 |
CC |
denotes |
and |
T7515 |
9447-9455 |
JJ |
denotes |
compound |
T7516 |
9478-9481 |
NN |
denotes |
TTD |
T7517 |
9456-9468 |
JJ |
denotes |
heterozygous |
T7518 |
9469-9477 |
NN |
denotes |
Xpd†XPCS |
T7519 |
9477-9478 |
HYPH |
denotes |
/ |
T7520 |
9487-9489 |
IN |
denotes |
as |
T7521 |
9490-9499 |
VBN |
denotes |
indicated |
T7522 |
9499-9500 |
. |
denotes |
. |
T7523 |
9500-9638 |
sentence |
denotes |
Hybridisation with a 1.4-kb mouse Xpd cDNA probe detects mRNAs of 4, 3.3, and 2.7 kb from wt, Xpd†XPCS, and XpdTTD alleles, respectively. |
T7524 |
9501-9514 |
NN |
denotes |
Hybridisation |
T7525 |
9550-9557 |
VBZ |
denotes |
detects |
T7526 |
9515-9519 |
IN |
denotes |
with |
T7527 |
9520-9521 |
DT |
denotes |
a |
T7528 |
9544-9549 |
NN |
denotes |
probe |
T7529 |
9522-9525 |
CD |
denotes |
1.4 |
T7530 |
9526-9528 |
NN |
denotes |
kb |
T7531 |
9525-9526 |
HYPH |
denotes |
- |
T7532 |
9529-9534 |
NN |
denotes |
mouse |
T7533 |
9535-9538 |
NN |
denotes |
Xpd |
T7534 |
9539-9543 |
NN |
denotes |
cDNA |
T7535 |
9558-9563 |
NNS |
denotes |
mRNAs |
T7536 |
9564-9566 |
IN |
denotes |
of |
T7537 |
9567-9568 |
CD |
denotes |
4 |
T7538 |
9583-9585 |
NN |
denotes |
kb |
T7539 |
9568-9570 |
, |
denotes |
, |
T7540 |
9570-9573 |
CD |
denotes |
3.3 |
T7541 |
9573-9575 |
, |
denotes |
, |
T7542 |
9575-9578 |
CC |
denotes |
and |
T7543 |
9579-9582 |
CD |
denotes |
2.7 |
T7544 |
9586-9590 |
IN |
denotes |
from |
T7545 |
9591-9593 |
NN |
denotes |
wt |
T7546 |
9616-9623 |
NNS |
denotes |
alleles |
T7547 |
9593-9595 |
, |
denotes |
, |
T7548 |
9595-9603 |
NN |
denotes |
Xpd†XPCS |
T7549 |
9603-9605 |
, |
denotes |
, |
T7550 |
9605-9608 |
CC |
denotes |
and |
T7551 |
9609-9615 |
NN |
denotes |
XpdTTD |
T7552 |
9623-9625 |
, |
denotes |
, |
T7553 |
9625-9637 |
RB |
denotes |
respectively |
T7554 |
9637-9638 |
. |
denotes |
. |
T7555 |
9638-9732 |
sentence |
denotes |
An ethidium bromide (EtBr)–stained gel showing the amount of total RNA loaded is shown below. |
T7556 |
9639-9641 |
DT |
denotes |
An |
T7557 |
9674-9677 |
NN |
denotes |
gel |
T7558 |
9642-9650 |
NN |
denotes |
ethidium |
T7559 |
9651-9658 |
NN |
denotes |
bromide |
T7560 |
9666-9673 |
VBN |
denotes |
stained |
T7561 |
9659-9660 |
-LRB- |
denotes |
( |
T7562 |
9660-9664 |
NN |
denotes |
EtBr |
T7563 |
9664-9665 |
-RRB- |
denotes |
) |
T7564 |
9665-9666 |
HYPH |
denotes |
– |
T7565 |
9720-9725 |
VBN |
denotes |
shown |
T7566 |
9678-9685 |
VBG |
denotes |
showing |
T7567 |
9686-9689 |
DT |
denotes |
the |
T7568 |
9690-9696 |
NN |
denotes |
amount |
T7569 |
9697-9699 |
IN |
denotes |
of |
T7570 |
9700-9705 |
JJ |
denotes |
total |
T7571 |
9706-9709 |
NN |
denotes |
RNA |
T7572 |
9710-9716 |
VBN |
denotes |
loaded |
T7573 |
9717-9719 |
VBZ |
denotes |
is |
T7574 |
9726-9731 |
RB |
denotes |
below |
T7575 |
9731-9732 |
. |
denotes |
. |
T7658 |
11937-11944 |
JJ |
denotes |
Partial |
T7659 |
11945-11951 |
NN |
denotes |
Rescue |
T7660 |
11952-11954 |
IN |
denotes |
of |
T7661 |
11955-11958 |
NN |
denotes |
TTD |
T7662 |
11959-11968 |
JJ |
denotes |
Cutaneous |
T7663 |
11968-11970 |
, |
denotes |
, |
T7664 |
11970-11975 |
NN |
denotes |
Blood |
T7665 |
11975-11977 |
, |
denotes |
, |
T7666 |
11977-11980 |
CC |
denotes |
and |
T7667 |
11981-11994 |
JJ |
denotes |
Developmental |
T7668 |
11995-12005 |
NNS |
denotes |
Phenotypes |
T7669 |
12006-12008 |
IN |
denotes |
in |
T7670 |
12009-12017 |
NN |
denotes |
Compound |
T7671 |
12044-12048 |
NNS |
denotes |
Mice |
T7672 |
12018-12030 |
JJ |
denotes |
Heterozygous |
T7673 |
12031-12037 |
NN |
denotes |
XpdTTD |
T7674 |
12038-12043 |
NN |
denotes |
†XPCS |
T7675 |
12037-12038 |
HYPH |
denotes |
/ |
T7676 |
12048-12148 |
sentence |
denotes |
(A) Photographs of 5-mo-old homozygous XpdTTD/TTD, compound heterozygous XpdTTD/†XPCS, and wt mice. |
T7677 |
12049-12050 |
-LRB- |
denotes |
( |
T7678 |
12050-12051 |
LS |
denotes |
A |
T7679 |
12053-12064 |
NNS |
denotes |
Photographs |
T7680 |
12051-12052 |
-RRB- |
denotes |
) |
T7681 |
12065-12067 |
IN |
denotes |
of |
T7682 |
12068-12069 |
CD |
denotes |
5 |
T7683 |
12070-12072 |
NN |
denotes |
mo |
T7684 |
12069-12070 |
HYPH |
denotes |
- |
T7685 |
12073-12076 |
JJ |
denotes |
old |
T7686 |
12072-12073 |
HYPH |
denotes |
- |
T7687 |
12143-12147 |
NNS |
denotes |
mice |
T7688 |
12077-12087 |
JJ |
denotes |
homozygous |
T7689 |
12095-12098 |
NN |
denotes |
TTD |
T7690 |
12088-12094 |
NN |
denotes |
XpdTTD |
T7691 |
12094-12095 |
HYPH |
denotes |
/ |
T7692 |
12098-12100 |
, |
denotes |
, |
T7693 |
12100-12108 |
NN |
denotes |
compound |
T7694 |
12129-12134 |
NN |
denotes |
†XPCS |
T7695 |
12109-12121 |
JJ |
denotes |
heterozygous |
T7696 |
12122-12128 |
NN |
denotes |
XpdTTD |
T7697 |
12128-12129 |
HYPH |
denotes |
/ |
T7698 |
12134-12136 |
, |
denotes |
, |
T7699 |
12136-12139 |
CC |
denotes |
and |
T7700 |
12140-12142 |
NN |
denotes |
wt |
T7701 |
12147-12148 |
. |
denotes |
. |
T7702 |
12148-12189 |
sentence |
denotes |
Insets: images of first-round hair loss. |
T7703 |
12149-12155 |
NNS |
denotes |
Insets |
T7704 |
12155-12157 |
: |
denotes |
: |
T7705 |
12157-12163 |
NNS |
denotes |
images |
T7706 |
12164-12166 |
IN |
denotes |
of |
T7707 |
12167-12172 |
JJ |
denotes |
first |
T7708 |
12173-12178 |
NN |
denotes |
round |
T7709 |
12172-12173 |
HYPH |
denotes |
- |
T7710 |
12184-12188 |
NN |
denotes |
loss |
T7711 |
12179-12183 |
NN |
denotes |
hair |
T7712 |
12188-12189 |
. |
denotes |
. |
T7713 |
12189-12269 |
sentence |
denotes |
(B) Histological analysis of the skin of XpdTTD/TTD, XpdTTD/†XPCS, and wt mice. |
T7714 |
12190-12191 |
-LRB- |
denotes |
( |
T7715 |
12191-12192 |
LS |
denotes |
B |
T7716 |
12207-12215 |
NN |
denotes |
analysis |
T7717 |
12192-12193 |
-RRB- |
denotes |
) |
T7718 |
12194-12206 |
JJ |
denotes |
Histological |
T7719 |
12216-12218 |
IN |
denotes |
of |
T7720 |
12219-12222 |
DT |
denotes |
the |
T7721 |
12223-12227 |
NN |
denotes |
skin |
T7722 |
12228-12230 |
IN |
denotes |
of |
T7723 |
12231-12237 |
NN |
denotes |
XpdTTD |
T7724 |
12238-12241 |
NN |
denotes |
TTD |
T7725 |
12237-12238 |
HYPH |
denotes |
/ |
T7726 |
12264-12268 |
NNS |
denotes |
mice |
T7727 |
12241-12243 |
, |
denotes |
, |
T7728 |
12243-12249 |
NN |
denotes |
XpdTTD |
T7729 |
12250-12255 |
NN |
denotes |
†XPCS |
T7730 |
12249-12250 |
HYPH |
denotes |
/ |
T7731 |
12255-12257 |
, |
denotes |
, |
T7732 |
12257-12260 |
CC |
denotes |
and |
T7733 |
12261-12263 |
NN |
denotes |
wt |
T7734 |
12268-12269 |
. |
denotes |
. |
T7735 |
12269-12525 |
sentence |
denotes |
TTD-associated acanthosis (thicker epidermis, indicated by solid vertical line), pronounced granular layer (indicated by arrows), and sebacious gland hyperplasia (indicated by dotted vertical line) were absent in the epidermis of XpdTTD/†XPCS and wt mice. |
T7736 |
12270-12273 |
NN |
denotes |
TTD |
T7737 |
12274-12284 |
JJ |
denotes |
associated |
T7738 |
12273-12274 |
HYPH |
denotes |
- |
T7739 |
12285-12295 |
NN |
denotes |
acanthosis |
T7740 |
12468-12472 |
VBD |
denotes |
were |
T7741 |
12296-12297 |
-LRB- |
denotes |
( |
T7742 |
12305-12314 |
NN |
denotes |
epidermis |
T7743 |
12297-12304 |
JJR |
denotes |
thicker |
T7744 |
12314-12316 |
, |
denotes |
, |
T7745 |
12316-12325 |
VBN |
denotes |
indicated |
T7746 |
12326-12328 |
IN |
denotes |
by |
T7747 |
12329-12334 |
JJ |
denotes |
solid |
T7748 |
12344-12348 |
NN |
denotes |
line |
T7749 |
12335-12343 |
JJ |
denotes |
vertical |
T7750 |
12348-12349 |
-RRB- |
denotes |
) |
T7751 |
12349-12351 |
, |
denotes |
, |
T7752 |
12351-12361 |
VBN |
denotes |
pronounced |
T7753 |
12371-12376 |
NN |
denotes |
layer |
T7754 |
12362-12370 |
JJ |
denotes |
granular |
T7755 |
12377-12378 |
-LRB- |
denotes |
( |
T7756 |
12378-12387 |
VBN |
denotes |
indicated |
T7757 |
12388-12390 |
IN |
denotes |
by |
T7758 |
12391-12397 |
NNS |
denotes |
arrows |
T7759 |
12397-12398 |
-RRB- |
denotes |
) |
T7760 |
12398-12400 |
, |
denotes |
, |
T7761 |
12400-12403 |
CC |
denotes |
and |
T7762 |
12404-12413 |
JJ |
denotes |
sebacious |
T7763 |
12420-12431 |
NN |
denotes |
hyperplasia |
T7764 |
12414-12419 |
NN |
denotes |
gland |
T7765 |
12432-12433 |
-LRB- |
denotes |
( |
T7766 |
12433-12442 |
VBN |
denotes |
indicated |
T7767 |
12443-12445 |
IN |
denotes |
by |
T7768 |
12446-12452 |
VBN |
denotes |
dotted |
T7769 |
12462-12466 |
NN |
denotes |
line |
T7770 |
12453-12461 |
JJ |
denotes |
vertical |
T7771 |
12466-12467 |
-RRB- |
denotes |
) |
T7772 |
12473-12479 |
JJ |
denotes |
absent |
T7773 |
12480-12482 |
IN |
denotes |
in |
T7774 |
12483-12486 |
DT |
denotes |
the |
T7775 |
12487-12496 |
NN |
denotes |
epidermis |
T7776 |
12497-12499 |
IN |
denotes |
of |
T7777 |
12500-12506 |
NN |
denotes |
XpdTTD |
T7778 |
12507-12512 |
NN |
denotes |
†XPCS |
T7779 |
12506-12507 |
HYPH |
denotes |
/ |
T7780 |
12520-12524 |
NNS |
denotes |
mice |
T7781 |
12513-12516 |
CC |
denotes |
and |
T7782 |
12517-12519 |
NN |
denotes |
wt |
T7783 |
12524-12525 |
. |
denotes |
. |
T7784 |
12525-12545 |
sentence |
denotes |
Magnification 400×. |
T7785 |
12526-12539 |
NN |
denotes |
Magnification |
T7786 |
12540-12543 |
CD |
denotes |
400 |
T7787 |
12543-12544 |
SYM |
denotes |
× |
T7788 |
12544-12545 |
. |
denotes |
. |
T7789 |
12545-12618 |
sentence |
denotes |
(C) Cysteine content of hair from wt, XpdTTD/TTD, and XpdTTD/†XPCS mice. |
T7790 |
12546-12547 |
-LRB- |
denotes |
( |
T7791 |
12547-12548 |
LS |
denotes |
C |
T7792 |
12559-12566 |
NN |
denotes |
content |
T7793 |
12548-12549 |
-RRB- |
denotes |
) |
T7794 |
12550-12558 |
NN |
denotes |
Cysteine |
T7795 |
12567-12569 |
IN |
denotes |
of |
T7796 |
12570-12574 |
NN |
denotes |
hair |
T7797 |
12575-12579 |
IN |
denotes |
from |
T7798 |
12580-12582 |
NN |
denotes |
wt |
T7799 |
12613-12617 |
NNS |
denotes |
mice |
T7800 |
12582-12584 |
, |
denotes |
, |
T7801 |
12584-12590 |
NN |
denotes |
XpdTTD |
T7802 |
12591-12594 |
NN |
denotes |
TTD |
T7803 |
12590-12591 |
HYPH |
denotes |
/ |
T7804 |
12594-12596 |
, |
denotes |
, |
T7805 |
12596-12599 |
CC |
denotes |
and |
T7806 |
12600-12606 |
NN |
denotes |
XpdTTD |
T7807 |
12607-12612 |
NN |
denotes |
†XPCS |
T7808 |
12606-12607 |
HYPH |
denotes |
/ |
T7809 |
12617-12618 |
. |
denotes |
. |
T7810 |
12618-12741 |
sentence |
denotes |
The p-value indicates significant differences between mutants and wt, as well as between XpdTTD/TTD and XpdTTD/†XPCS mice. |
T7811 |
12619-12622 |
DT |
denotes |
The |
T7812 |
12625-12630 |
NN |
denotes |
value |
T7813 |
12623-12624 |
NN |
denotes |
p |
T7814 |
12624-12625 |
HYPH |
denotes |
- |
T7815 |
12631-12640 |
VBZ |
denotes |
indicates |
T7816 |
12641-12652 |
JJ |
denotes |
significant |
T7817 |
12653-12664 |
NNS |
denotes |
differences |
T7818 |
12665-12672 |
IN |
denotes |
between |
T7819 |
12673-12680 |
NNS |
denotes |
mutants |
T7820 |
12681-12684 |
CC |
denotes |
and |
T7821 |
12685-12687 |
NN |
denotes |
wt |
T7822 |
12687-12689 |
, |
denotes |
, |
T7823 |
12689-12691 |
RB |
denotes |
as |
T7824 |
12697-12699 |
IN |
denotes |
as |
T7825 |
12692-12696 |
RB |
denotes |
well |
T7826 |
12700-12707 |
IN |
denotes |
between |
T7827 |
12708-12714 |
NN |
denotes |
XpdTTD |
T7828 |
12715-12718 |
NN |
denotes |
TTD |
T7829 |
12714-12715 |
HYPH |
denotes |
/ |
T7830 |
12736-12740 |
NNS |
denotes |
mice |
T7831 |
12719-12722 |
CC |
denotes |
and |
T7832 |
12723-12729 |
NN |
denotes |
XpdTTD |
T7833 |
12730-12735 |
NN |
denotes |
†XPCS |
T7834 |
12729-12730 |
HYPH |
denotes |
/ |
T7835 |
12740-12741 |
. |
denotes |
. |
T7836 |
12741-12795 |
sentence |
denotes |
Error bars indicate standard error of the mean (SEM). |
T7837 |
12742-12747 |
NN |
denotes |
Error |
T7838 |
12748-12752 |
NNS |
denotes |
bars |
T7839 |
12753-12761 |
VBP |
denotes |
indicate |
T7840 |
12762-12770 |
JJ |
denotes |
standard |
T7841 |
12771-12776 |
NN |
denotes |
error |
T7842 |
12777-12779 |
IN |
denotes |
of |
T7843 |
12780-12783 |
DT |
denotes |
the |
T7844 |
12784-12788 |
NN |
denotes |
mean |
T7845 |
12789-12790 |
-LRB- |
denotes |
( |
T7846 |
12790-12793 |
NN |
denotes |
SEM |
T7847 |
12793-12794 |
-RRB- |
denotes |
) |
T7848 |
12794-12795 |
. |
denotes |
. |
T7849 |
12795-12865 |
sentence |
denotes |
(D) Hematocrit values from blood of XpdTTD/TTD and XpdTTD/†XPCS mice. |
T7850 |
12796-12797 |
-LRB- |
denotes |
( |
T7851 |
12797-12798 |
LS |
denotes |
D |
T7852 |
12811-12817 |
NNS |
denotes |
values |
T7853 |
12798-12799 |
-RRB- |
denotes |
) |
T7854 |
12800-12810 |
NN |
denotes |
Hematocrit |
T7855 |
12818-12822 |
IN |
denotes |
from |
T7856 |
12823-12828 |
NN |
denotes |
blood |
T7857 |
12829-12831 |
IN |
denotes |
of |
T7858 |
12832-12838 |
NN |
denotes |
XpdTTD |
T7859 |
12839-12842 |
NN |
denotes |
TTD |
T7860 |
12838-12839 |
HYPH |
denotes |
/ |
T7861 |
12860-12864 |
NNS |
denotes |
mice |
T7862 |
12843-12846 |
CC |
denotes |
and |
T7863 |
12847-12853 |
NN |
denotes |
XpdTTD |
T7864 |
12854-12859 |
NN |
denotes |
†XPCS |
T7865 |
12853-12854 |
HYPH |
denotes |
/ |
T7866 |
12864-12865 |
. |
denotes |
. |
T7867 |
12865-12938 |
sentence |
denotes |
The p-values indicate the significance of the difference relative to wt. |
T7868 |
12866-12869 |
DT |
denotes |
The |
T7869 |
12872-12878 |
NNS |
denotes |
values |
T7870 |
12870-12871 |
NN |
denotes |
p |
T7871 |
12871-12872 |
HYPH |
denotes |
- |
T7872 |
12879-12887 |
VBP |
denotes |
indicate |
T7873 |
12888-12891 |
DT |
denotes |
the |
T7874 |
12892-12904 |
NN |
denotes |
significance |
T7875 |
12905-12907 |
IN |
denotes |
of |
T7876 |
12908-12911 |
DT |
denotes |
the |
T7877 |
12912-12922 |
NN |
denotes |
difference |
T7878 |
12923-12931 |
JJ |
denotes |
relative |
T7879 |
12932-12934 |
IN |
denotes |
to |
T7880 |
12935-12937 |
NN |
denotes |
wt |
T7881 |
12937-12938 |
. |
denotes |
. |
T7882 |
12938-12963 |
sentence |
denotes |
Error bars indicate SEM. |
T7883 |
12939-12944 |
NN |
denotes |
Error |
T7884 |
12945-12949 |
NNS |
denotes |
bars |
T7885 |
12950-12958 |
VBP |
denotes |
indicate |
T7886 |
12959-12962 |
NN |
denotes |
SEM |
T7887 |
12962-12963 |
. |
denotes |
. |
T7888 |
12963-13154 |
sentence |
denotes |
(E) Body weights of developing XpdTTD/TTD and XpdTTD/†XPCS mice after weaning plotted as a percentage of the weight of age-matched control wt and heterozygote (hz) littermates (set at 100%). |
T7889 |
12964-12965 |
-LRB- |
denotes |
( |
T7890 |
12965-12966 |
LS |
denotes |
E |
T7891 |
12973-12980 |
NNS |
denotes |
weights |
T7892 |
12966-12967 |
-RRB- |
denotes |
) |
T7893 |
12968-12972 |
NN |
denotes |
Body |
T7894 |
12981-12983 |
IN |
denotes |
of |
T7895 |
12984-12994 |
VBG |
denotes |
developing |
T7896 |
13023-13027 |
NNS |
denotes |
mice |
T7897 |
12995-13001 |
NN |
denotes |
XpdTTD |
T7898 |
13002-13005 |
NN |
denotes |
TTD |
T7899 |
13001-13002 |
HYPH |
denotes |
/ |
T7900 |
13006-13009 |
CC |
denotes |
and |
T7901 |
13010-13016 |
NN |
denotes |
XpdTTD |
T7902 |
13017-13022 |
NN |
denotes |
†XPCS |
T7903 |
13016-13017 |
HYPH |
denotes |
/ |
T7904 |
13028-13033 |
IN |
denotes |
after |
T7905 |
13034-13041 |
VBG |
denotes |
weaning |
T7906 |
13042-13049 |
VBN |
denotes |
plotted |
T7907 |
13050-13052 |
IN |
denotes |
as |
T7908 |
13053-13054 |
DT |
denotes |
a |
T7909 |
13055-13065 |
NN |
denotes |
percentage |
T7910 |
13066-13068 |
IN |
denotes |
of |
T7911 |
13069-13072 |
DT |
denotes |
the |
T7912 |
13073-13079 |
NN |
denotes |
weight |
T7913 |
13080-13082 |
IN |
denotes |
of |
T7914 |
13083-13086 |
NN |
denotes |
age |
T7915 |
13087-13094 |
JJ |
denotes |
matched |
T7916 |
13086-13087 |
HYPH |
denotes |
- |
T7917 |
13128-13139 |
NNS |
denotes |
littermates |
T7918 |
13095-13102 |
NN |
denotes |
control |
T7919 |
13103-13105 |
NN |
denotes |
wt |
T7920 |
13106-13109 |
CC |
denotes |
and |
T7921 |
13110-13122 |
NN |
denotes |
heterozygote |
T7922 |
13123-13124 |
-LRB- |
denotes |
( |
T7923 |
13124-13126 |
NN |
denotes |
hz |
T7924 |
13126-13127 |
-RRB- |
denotes |
) |
T7925 |
13140-13141 |
-LRB- |
denotes |
( |
T7926 |
13141-13144 |
VBN |
denotes |
set |
T7927 |
13145-13147 |
IN |
denotes |
at |
T7928 |
13148-13151 |
CD |
denotes |
100 |
T7929 |
13151-13152 |
NN |
denotes |
% |
T7930 |
13152-13153 |
-RRB- |
denotes |
) |
T7931 |
13153-13154 |
. |
denotes |
. |
T7932 |
13154-13179 |
sentence |
denotes |
Error bars indicate SEM. |
T7933 |
13155-13160 |
NN |
denotes |
Error |
T7934 |
13161-13165 |
NNS |
denotes |
bars |
T7935 |
13166-13174 |
VBP |
denotes |
indicate |
T7936 |
13175-13178 |
NN |
denotes |
SEM |
T7937 |
13178-13179 |
. |
denotes |
. |
T8041 |
14852-14858 |
NN |
denotes |
Rescue |
T8042 |
14859-14861 |
IN |
denotes |
of |
T8043 |
14862-14865 |
NN |
denotes |
TTD |
T8044 |
14866-14876 |
JJ |
denotes |
Associated |
T8045 |
14865-14866 |
HYPH |
denotes |
- |
T8046 |
14897-14905 |
NNS |
denotes |
Features |
T8047 |
14877-14886 |
JJ |
denotes |
Segmental |
T8048 |
14887-14896 |
JJ |
denotes |
Progeroid |
T8049 |
14906-14908 |
IN |
denotes |
in |
T8050 |
14909-14917 |
JJ |
denotes |
Compound |
T8051 |
14945-14949 |
NNS |
denotes |
Mice |
T8052 |
14918-14930 |
JJ |
denotes |
Heterozygous |
T8053 |
14931-14938 |
NN |
denotes |
Xpd TTD |
T8054 |
14939-14944 |
NN |
denotes |
†XPCS |
T8055 |
14938-14939 |
HYPH |
denotes |
/ |
T8056 |
14949-15050 |
sentence |
denotes |
(A) Photographs of 20-mo-old wt, compound heterozygous XpdTTD/†XPCS, and homozygous XpdTTD/TTD mice. |
T8057 |
14950-14951 |
-LRB- |
denotes |
( |
T8058 |
14951-14952 |
LS |
denotes |
A |
T8059 |
14954-14965 |
NNS |
denotes |
Photographs |
T8060 |
14952-14953 |
-RRB- |
denotes |
) |
T8061 |
14966-14968 |
IN |
denotes |
of |
T8062 |
14969-14971 |
CD |
denotes |
20 |
T8063 |
14972-14974 |
NN |
denotes |
mo |
T8064 |
14971-14972 |
HYPH |
denotes |
- |
T8065 |
14975-14978 |
JJ |
denotes |
old |
T8066 |
14974-14975 |
HYPH |
denotes |
- |
T8067 |
15045-15049 |
NNS |
denotes |
mice |
T8068 |
14979-14981 |
NN |
denotes |
wt |
T8069 |
14981-14983 |
, |
denotes |
, |
T8070 |
14983-14991 |
JJ |
denotes |
compound |
T8071 |
15012-15017 |
NN |
denotes |
†XPCS |
T8072 |
14992-15004 |
JJ |
denotes |
heterozygous |
T8073 |
15005-15011 |
NN |
denotes |
XpdTTD |
T8074 |
15011-15012 |
HYPH |
denotes |
/ |
T8075 |
15017-15019 |
, |
denotes |
, |
T8076 |
15019-15022 |
CC |
denotes |
and |
T8077 |
15023-15033 |
JJ |
denotes |
homozygous |
T8078 |
15041-15044 |
NN |
denotes |
TTD |
T8079 |
15034-15040 |
NN |
denotes |
XpdTTD |
T8080 |
15040-15041 |
HYPH |
denotes |
/ |
T8081 |
15049-15050 |
. |
denotes |
. |
T8082 |
15050-15190 |
sentence |
denotes |
Note the extreme cachexia (lack of subcutaneous fat) in the XpdTTD/TTD mouse and the absence of this phenotype in wt and XpdTTD/†XPCS mice. |
T8083 |
15051-15055 |
VB |
denotes |
Note |
T8084 |
15056-15059 |
DT |
denotes |
the |
T8085 |
15068-15076 |
NN |
denotes |
cachexia |
T8086 |
15060-15067 |
JJ |
denotes |
extreme |
T8087 |
15077-15078 |
-LRB- |
denotes |
( |
T8088 |
15078-15082 |
NN |
denotes |
lack |
T8089 |
15083-15085 |
IN |
denotes |
of |
T8090 |
15086-15098 |
JJ |
denotes |
subcutaneous |
T8091 |
15099-15102 |
NN |
denotes |
fat |
T8092 |
15102-15103 |
-RRB- |
denotes |
) |
T8093 |
15104-15106 |
IN |
denotes |
in |
T8094 |
15107-15110 |
DT |
denotes |
the |
T8095 |
15122-15127 |
NN |
denotes |
mouse |
T8096 |
15111-15117 |
NN |
denotes |
XpdTTD |
T8097 |
15118-15121 |
NN |
denotes |
TTD |
T8098 |
15117-15118 |
HYPH |
denotes |
/ |
T8099 |
15128-15131 |
CC |
denotes |
and |
T8100 |
15132-15135 |
DT |
denotes |
the |
T8101 |
15136-15143 |
NN |
denotes |
absence |
T8102 |
15144-15146 |
IN |
denotes |
of |
T8103 |
15147-15151 |
DT |
denotes |
this |
T8104 |
15152-15161 |
NN |
denotes |
phenotype |
T8105 |
15162-15164 |
IN |
denotes |
in |
T8106 |
15165-15167 |
NN |
denotes |
wt |
T8107 |
15185-15189 |
NNS |
denotes |
mice |
T8108 |
15168-15171 |
CC |
denotes |
and |
T8109 |
15172-15178 |
NN |
denotes |
XpdTTD |
T8110 |
15179-15184 |
NN |
denotes |
†XPCS |
T8111 |
15178-15179 |
HYPH |
denotes |
/ |
T8112 |
15189-15190 |
. |
denotes |
. |
T8113 |
15190-15263 |
sentence |
denotes |
(B) Radiographs of 20-mo-old male wt, XpdTTD/†XPCS, and XpdTTD/TTD mice. |
T8114 |
15191-15192 |
-LRB- |
denotes |
( |
T8115 |
15192-15193 |
LS |
denotes |
B |
T8116 |
15195-15206 |
NNS |
denotes |
Radiographs |
T8117 |
15193-15194 |
-RRB- |
denotes |
) |
T8118 |
15207-15209 |
IN |
denotes |
of |
T8119 |
15210-15212 |
CD |
denotes |
20 |
T8120 |
15213-15215 |
NN |
denotes |
mo |
T8121 |
15212-15213 |
HYPH |
denotes |
- |
T8122 |
15216-15219 |
JJ |
denotes |
old |
T8123 |
15215-15216 |
HYPH |
denotes |
- |
T8124 |
15258-15262 |
NNS |
denotes |
mice |
T8125 |
15220-15224 |
JJ |
denotes |
male |
T8126 |
15225-15227 |
NN |
denotes |
wt |
T8127 |
15227-15229 |
, |
denotes |
, |
T8128 |
15229-15235 |
NN |
denotes |
XpdTTD |
T8129 |
15236-15241 |
NN |
denotes |
†XPCS |
T8130 |
15235-15236 |
HYPH |
denotes |
/ |
T8131 |
15241-15243 |
, |
denotes |
, |
T8132 |
15243-15246 |
CC |
denotes |
and |
T8133 |
15247-15253 |
NN |
denotes |
XpdTTD |
T8134 |
15254-15257 |
NN |
denotes |
TTD |
T8135 |
15253-15254 |
HYPH |
denotes |
/ |
T8136 |
15262-15263 |
. |
denotes |
. |
T8137 |
15263-15473 |
sentence |
denotes |
Ageing XpdTTD/TTD mice develop kyphosis (curvature of the spinal column) and reduction of bone mineral density as shown in the 6–8 segment of the tail vertebrae counted from the pelvis (see close-up at right). |
T8138 |
15264-15270 |
VBG |
denotes |
Ageing |
T8139 |
15282-15286 |
NNS |
denotes |
mice |
T8140 |
15271-15277 |
NN |
denotes |
XpdTTD |
T8141 |
15278-15281 |
NN |
denotes |
TTD |
T8142 |
15277-15278 |
HYPH |
denotes |
/ |
T8143 |
15287-15294 |
VBP |
denotes |
develop |
T8144 |
15295-15303 |
NN |
denotes |
kyphosis |
T8145 |
15304-15305 |
-LRB- |
denotes |
( |
T8146 |
15305-15314 |
NN |
denotes |
curvature |
T8147 |
15315-15317 |
IN |
denotes |
of |
T8148 |
15318-15321 |
DT |
denotes |
the |
T8149 |
15329-15335 |
NN |
denotes |
column |
T8150 |
15322-15328 |
JJ |
denotes |
spinal |
T8151 |
15335-15336 |
-RRB- |
denotes |
) |
T8152 |
15337-15340 |
CC |
denotes |
and |
T8153 |
15341-15350 |
NN |
denotes |
reduction |
T8154 |
15351-15353 |
IN |
denotes |
of |
T8155 |
15354-15358 |
NN |
denotes |
bone |
T8156 |
15359-15366 |
NN |
denotes |
mineral |
T8157 |
15367-15374 |
NN |
denotes |
density |
T8158 |
15375-15377 |
IN |
denotes |
as |
T8159 |
15378-15383 |
VBN |
denotes |
shown |
T8160 |
15384-15386 |
IN |
denotes |
in |
T8161 |
15387-15390 |
DT |
denotes |
the |
T8162 |
15395-15402 |
NN |
denotes |
segment |
T8163 |
15391-15392 |
CD |
denotes |
6 |
T8164 |
15393-15394 |
CD |
denotes |
8 |
T8165 |
15392-15393 |
SYM |
denotes |
– |
T8166 |
15403-15405 |
IN |
denotes |
of |
T8167 |
15406-15409 |
DT |
denotes |
the |
T8168 |
15415-15424 |
NNS |
denotes |
vertebrae |
T8169 |
15410-15414 |
NN |
denotes |
tail |
T8170 |
15425-15432 |
VBN |
denotes |
counted |
T8171 |
15433-15437 |
IN |
denotes |
from |
T8172 |
15438-15441 |
DT |
denotes |
the |
T8173 |
15442-15448 |
NN |
denotes |
pelvis |
T8174 |
15449-15450 |
-LRB- |
denotes |
( |
T8175 |
15450-15453 |
VB |
denotes |
see |
T8176 |
15454-15459 |
JJ |
denotes |
close |
T8177 |
15459-15460 |
HYPH |
denotes |
- |
T8178 |
15460-15462 |
RP |
denotes |
up |
T8179 |
15463-15465 |
IN |
denotes |
at |
T8180 |
15466-15471 |
NN |
denotes |
right |
T8181 |
15471-15472 |
-RRB- |
denotes |
) |
T8182 |
15472-15473 |
. |
denotes |
. |
T8183 |
15473-15538 |
sentence |
denotes |
Note the absence of these features in the XpdTTD / † XPCS mouse. |
T8184 |
15474-15478 |
VB |
denotes |
Note |
T8185 |
15479-15482 |
DT |
denotes |
the |
T8186 |
15483-15490 |
NN |
denotes |
absence |
T8187 |
15491-15493 |
IN |
denotes |
of |
T8188 |
15494-15499 |
DT |
denotes |
these |
T8189 |
15500-15508 |
NNS |
denotes |
features |
T8190 |
15509-15511 |
IN |
denotes |
in |
T8191 |
15512-15515 |
DT |
denotes |
the |
T8192 |
15532-15537 |
NN |
denotes |
mouse |
T8193 |
15516-15523 |
NN |
denotes |
XpdTTD |
T8194 |
15524-15531 |
NN |
denotes |
† XPCS |
T8195 |
15523-15524 |
HYPH |
denotes |
/ |
T8196 |
15537-15538 |
. |
denotes |
. |
T8197 |
15538-15691 |
sentence |
denotes |
(C) Quantification of relative bone mineral density of tail vertebrae from 20-mo-old male wt (n = 3), XpdTTD/†XPCS (n = 4), and XpdTTD/TTD (n = 3) mice. |
T8198 |
15539-15540 |
-LRB- |
denotes |
( |
T8199 |
15540-15541 |
LS |
denotes |
C |
T8200 |
15543-15557 |
NN |
denotes |
Quantification |
T8201 |
15541-15542 |
-RRB- |
denotes |
) |
T8202 |
15558-15560 |
IN |
denotes |
of |
T8203 |
15561-15569 |
JJ |
denotes |
relative |
T8204 |
15583-15590 |
NN |
denotes |
density |
T8205 |
15570-15574 |
NN |
denotes |
bone |
T8206 |
15575-15582 |
NN |
denotes |
mineral |
T8207 |
15591-15593 |
IN |
denotes |
of |
T8208 |
15594-15598 |
NN |
denotes |
tail |
T8209 |
15599-15608 |
NNS |
denotes |
vertebrae |
T8210 |
15609-15613 |
IN |
denotes |
from |
T8211 |
15614-15616 |
CD |
denotes |
20 |
T8212 |
15617-15619 |
NN |
denotes |
mo |
T8213 |
15616-15617 |
HYPH |
denotes |
- |
T8214 |
15620-15623 |
JJ |
denotes |
old |
T8215 |
15619-15620 |
HYPH |
denotes |
- |
T8216 |
15686-15690 |
NNS |
denotes |
mice |
T8217 |
15624-15628 |
JJ |
denotes |
male |
T8218 |
15629-15631 |
NN |
denotes |
wt |
T8219 |
15632-15633 |
-LRB- |
denotes |
( |
T8220 |
15637-15638 |
CD |
denotes |
3 |
T8221 |
15633-15634 |
NN |
denotes |
n |
T8222 |
15635-15636 |
SYM |
denotes |
= |
T8223 |
15638-15639 |
-RRB- |
denotes |
) |
T8224 |
15639-15641 |
, |
denotes |
, |
T8225 |
15641-15647 |
NN |
denotes |
XpdTTD |
T8226 |
15648-15653 |
NN |
denotes |
†XPCS |
T8227 |
15647-15648 |
HYPH |
denotes |
/ |
T8228 |
15654-15655 |
-LRB- |
denotes |
( |
T8229 |
15659-15660 |
CD |
denotes |
4 |
T8230 |
15655-15656 |
NN |
denotes |
n |
T8231 |
15657-15658 |
SYM |
denotes |
= |
T8232 |
15660-15661 |
-RRB- |
denotes |
) |
T8233 |
15661-15663 |
, |
denotes |
, |
T8234 |
15663-15666 |
CC |
denotes |
and |
T8235 |
15667-15673 |
NN |
denotes |
XpdTTD |
T8236 |
15674-15677 |
NN |
denotes |
TTD |
T8237 |
15673-15674 |
HYPH |
denotes |
/ |
T8238 |
15678-15679 |
-LRB- |
denotes |
( |
T8239 |
15683-15684 |
CD |
denotes |
3 |
T8240 |
15679-15680 |
NN |
denotes |
n |
T8241 |
15681-15682 |
SYM |
denotes |
= |
T8242 |
15684-15685 |
-RRB- |
denotes |
) |
T8243 |
15690-15691 |
. |
denotes |
. |
T8244 |
15691-15772 |
sentence |
denotes |
The p-values indicate the significance of the difference relative to XpdTTD/TTD. |
T8245 |
15692-15695 |
DT |
denotes |
The |
T8246 |
15698-15704 |
NNS |
denotes |
values |
T8247 |
15696-15697 |
NN |
denotes |
p |
T8248 |
15697-15698 |
HYPH |
denotes |
- |
T8249 |
15705-15713 |
VBP |
denotes |
indicate |
T8250 |
15714-15717 |
DT |
denotes |
the |
T8251 |
15718-15730 |
NN |
denotes |
significance |
T8252 |
15731-15733 |
IN |
denotes |
of |
T8253 |
15734-15737 |
DT |
denotes |
the |
T8254 |
15738-15748 |
NN |
denotes |
difference |
T8255 |
15749-15757 |
JJ |
denotes |
relative |
T8256 |
15758-15760 |
IN |
denotes |
to |
T8257 |
15761-15767 |
NN |
denotes |
XpdTTD |
T8258 |
15768-15771 |
NN |
denotes |
TTD |
T8259 |
15767-15768 |
HYPH |
denotes |
/ |
T8260 |
15771-15772 |
. |
denotes |
. |
T8261 |
15772-15797 |
sentence |
denotes |
Error bars indicate SEM. |
T8262 |
15773-15778 |
NN |
denotes |
Error |
T8263 |
15779-15783 |
NNS |
denotes |
bars |
T8264 |
15784-15792 |
VBP |
denotes |
indicate |
T8265 |
15793-15796 |
NN |
denotes |
SEM |
T8266 |
15796-15797 |
. |
denotes |
. |
T8267 |
15797-15843 |
sentence |
denotes |
(D) Body weight curves as a function of time. |
T8268 |
15798-15799 |
-LRB- |
denotes |
( |
T8269 |
15799-15800 |
LS |
denotes |
D |
T8270 |
15814-15820 |
NNS |
denotes |
curves |
T8271 |
15800-15801 |
-RRB- |
denotes |
) |
T8272 |
15802-15806 |
NN |
denotes |
Body |
T8273 |
15807-15813 |
NN |
denotes |
weight |
T8274 |
15821-15823 |
IN |
denotes |
as |
T8275 |
15824-15825 |
DT |
denotes |
a |
T8276 |
15826-15834 |
NN |
denotes |
function |
T8277 |
15835-15837 |
IN |
denotes |
of |
T8278 |
15838-15842 |
NN |
denotes |
time |
T8279 |
15842-15843 |
. |
denotes |
. |
T8280 |
15843-15965 |
sentence |
denotes |
Note that the age-dependent cachexia observed in XpdTTD/TTD mice was rescued in both male and female XpdTTD / †XPCS mice. |
T8281 |
15844-15848 |
VB |
denotes |
Note |
T8282 |
15849-15853 |
IN |
denotes |
that |
T8283 |
15913-15920 |
VBN |
denotes |
rescued |
T8284 |
15854-15857 |
DT |
denotes |
the |
T8285 |
15872-15880 |
NN |
denotes |
cachexia |
T8286 |
15858-15861 |
NN |
denotes |
age |
T8287 |
15862-15871 |
JJ |
denotes |
dependent |
T8288 |
15861-15862 |
HYPH |
denotes |
- |
T8289 |
15881-15889 |
VBN |
denotes |
observed |
T8290 |
15890-15892 |
IN |
denotes |
in |
T8291 |
15893-15899 |
NN |
denotes |
XpdTTD |
T8292 |
15900-15903 |
NN |
denotes |
TTD |
T8293 |
15899-15900 |
HYPH |
denotes |
/ |
T8294 |
15904-15908 |
NNS |
denotes |
mice |
T8295 |
15909-15912 |
VBD |
denotes |
was |
T8296 |
15921-15923 |
IN |
denotes |
in |
T8297 |
15924-15928 |
CC |
denotes |
both |
T8298 |
15929-15933 |
JJ |
denotes |
male |
T8299 |
15960-15964 |
NNS |
denotes |
mice |
T8300 |
15934-15937 |
CC |
denotes |
and |
T8301 |
15938-15944 |
JJ |
denotes |
female |
T8302 |
15945-15952 |
NN |
denotes |
XpdTTD |
T8303 |
15953-15959 |
NN |
denotes |
†XPCS |
T8304 |
15952-15953 |
HYPH |
denotes |
/ |
T8305 |
15964-15965 |
. |
denotes |
. |
T8306 |
15965-16119 |
sentence |
denotes |
Significant differences between wt and XpdTTD/TTD but not between wt and XpdTTD/†XPCS mice were observed at 9 and 18 mo of age as indicated by asterisks. |
T8307 |
15966-15977 |
JJ |
denotes |
Significant |
T8308 |
15978-15989 |
NNS |
denotes |
differences |
T8309 |
16062-16070 |
VBN |
denotes |
observed |
T8310 |
15990-15997 |
IN |
denotes |
between |
T8311 |
15998-16000 |
NN |
denotes |
wt |
T8312 |
16001-16004 |
CC |
denotes |
and |
T8313 |
16005-16011 |
NN |
denotes |
XpdTTD |
T8314 |
16012-16015 |
NN |
denotes |
TTD |
T8315 |
16011-16012 |
HYPH |
denotes |
/ |
T8316 |
16016-16019 |
CC |
denotes |
but |
T8317 |
16020-16023 |
RB |
denotes |
not |
T8318 |
16024-16031 |
IN |
denotes |
between |
T8319 |
16032-16034 |
NN |
denotes |
wt |
T8320 |
16052-16056 |
NNS |
denotes |
mice |
T8321 |
16035-16038 |
CC |
denotes |
and |
T8322 |
16039-16045 |
NN |
denotes |
XpdTTD |
T8323 |
16046-16051 |
NN |
denotes |
†XPCS |
T8324 |
16045-16046 |
HYPH |
denotes |
/ |
T8325 |
16057-16061 |
VBD |
denotes |
were |
T8326 |
16071-16073 |
IN |
denotes |
at |
T8327 |
16074-16075 |
CD |
denotes |
9 |
T8328 |
16083-16085 |
NNS |
denotes |
mo |
T8329 |
16076-16079 |
CC |
denotes |
and |
T8330 |
16080-16082 |
CD |
denotes |
18 |
T8331 |
16086-16088 |
IN |
denotes |
of |
T8332 |
16089-16092 |
NN |
denotes |
age |
T8333 |
16093-16095 |
IN |
denotes |
as |
T8334 |
16096-16105 |
VBN |
denotes |
indicated |
T8335 |
16106-16108 |
IN |
denotes |
by |
T8336 |
16109-16118 |
NNS |
denotes |
asterisks |
T8337 |
16118-16119 |
. |
denotes |
. |
T8338 |
16119-16144 |
sentence |
denotes |
Error bars indicate SEM. |
T8339 |
16120-16125 |
NN |
denotes |
Error |
T8340 |
16126-16130 |
NNS |
denotes |
bars |
T8341 |
16131-16139 |
VBP |
denotes |
indicate |
T8342 |
16140-16143 |
NN |
denotes |
SEM |
T8343 |
16143-16144 |
. |
denotes |
. |
T8564 |
19446-19451 |
NN |
denotes |
TFIIH |
T8565 |
19452-19461 |
NNS |
denotes |
Functions |
T8566 |
19462-19465 |
CC |
denotes |
and |
T8567 |
19466-19476 |
NNS |
denotes |
Mechanisms |
T8568 |
19477-19479 |
IN |
denotes |
of |
T8569 |
19480-19483 |
NN |
denotes |
XPD |
T8570 |
19484-19494 |
VBN |
denotes |
Associated |
T8571 |
19483-19484 |
HYPH |
denotes |
- |
T8572 |
19503-19513 |
NN |
denotes |
Pleiotropy |
T8573 |
19495-19502 |
NN |
denotes |
Disease |
T8574 |
19513-19557 |
sentence |
denotes |
(A) Cellular survival after UV irradiation. |
T8575 |
19514-19515 |
-LRB- |
denotes |
( |
T8576 |
19515-19516 |
LS |
denotes |
A |
T8577 |
19527-19535 |
NN |
denotes |
survival |
T8578 |
19516-19517 |
-RRB- |
denotes |
) |
T8579 |
19518-19526 |
JJ |
denotes |
Cellular |
T8580 |
19536-19541 |
IN |
denotes |
after |
T8581 |
19542-19544 |
NN |
denotes |
UV |
T8582 |
19545-19556 |
NN |
denotes |
irradiation |
T8583 |
19556-19557 |
. |
denotes |
. |
T8584 |
19557-19683 |
sentence |
denotes |
Rescue of hemizygous XpdTTD/KO survival by Xpd†XPCS and Xpd†XP alleles is illustrated by arrows marked A and B, respectively. |
T8585 |
19558-19564 |
NN |
denotes |
Rescue |
T8586 |
19632-19643 |
VBN |
denotes |
illustrated |
T8587 |
19565-19567 |
IN |
denotes |
of |
T8588 |
19568-19578 |
JJ |
denotes |
hemizygous |
T8589 |
19589-19597 |
NN |
denotes |
survival |
T8590 |
19579-19585 |
NN |
denotes |
XpdTTD |
T8591 |
19586-19588 |
NN |
denotes |
KO |
T8592 |
19585-19586 |
HYPH |
denotes |
/ |
T8593 |
19598-19600 |
IN |
denotes |
by |
T8594 |
19601-19609 |
NN |
denotes |
Xpd†XPCS |
T8595 |
19621-19628 |
NNS |
denotes |
alleles |
T8596 |
19610-19613 |
CC |
denotes |
and |
T8597 |
19614-19620 |
NN |
denotes |
Xpd†XP |
T8598 |
19629-19631 |
VBZ |
denotes |
is |
T8599 |
19644-19646 |
IN |
denotes |
by |
T8600 |
19647-19653 |
NNS |
denotes |
arrows |
T8601 |
19654-19660 |
VBN |
denotes |
marked |
T8602 |
19661-19662 |
NN |
denotes |
A |
T8603 |
19663-19666 |
CC |
denotes |
and |
T8604 |
19667-19668 |
NN |
denotes |
B |
T8605 |
19668-19670 |
, |
denotes |
, |
T8606 |
19670-19682 |
RB |
denotes |
respectively |
T8607 |
19682-19683 |
. |
denotes |
. |
T8608 |
19683-19821 |
sentence |
denotes |
UV survival of homozygous XpdXPCS/XPCS cells (asterisk) from the normally expressed viable allele (XpdXPCS) is depicted by a dotted line. |
T8609 |
19684-19686 |
NN |
denotes |
UV |
T8610 |
19687-19695 |
NN |
denotes |
survival |
T8611 |
19795-19803 |
VBN |
denotes |
depicted |
T8612 |
19696-19698 |
IN |
denotes |
of |
T8613 |
19699-19709 |
JJ |
denotes |
homozygous |
T8614 |
19723-19728 |
NNS |
denotes |
cells |
T8615 |
19710-19717 |
NN |
denotes |
XpdXPCS |
T8616 |
19718-19722 |
NN |
denotes |
XPCS |
T8617 |
19717-19718 |
HYPH |
denotes |
/ |
T8618 |
19729-19730 |
-LRB- |
denotes |
( |
T8619 |
19730-19738 |
NN |
denotes |
asterisk |
T8620 |
19738-19739 |
-RRB- |
denotes |
) |
T8621 |
19740-19744 |
IN |
denotes |
from |
T8622 |
19745-19748 |
DT |
denotes |
the |
T8623 |
19775-19781 |
NN |
denotes |
allele |
T8624 |
19749-19757 |
RB |
denotes |
normally |
T8625 |
19758-19767 |
VBN |
denotes |
expressed |
T8626 |
19768-19774 |
JJ |
denotes |
viable |
T8627 |
19782-19783 |
-LRB- |
denotes |
( |
T8628 |
19783-19790 |
NN |
denotes |
XpdXPCS |
T8629 |
19790-19791 |
-RRB- |
denotes |
) |
T8630 |
19792-19794 |
VBZ |
denotes |
is |
T8631 |
19804-19806 |
IN |
denotes |
by |
T8632 |
19807-19808 |
DT |
denotes |
a |
T8633 |
19816-19820 |
NN |
denotes |
line |
T8634 |
19809-19815 |
VBN |
denotes |
dotted |
T8635 |
19820-19821 |
. |
denotes |
. |
T8636 |
19821-19953 |
sentence |
denotes |
Survival curves represent an average of four independent experiments; 1–2 cell lines per genotype were included in each experiment. |
T8637 |
19822-19830 |
NN |
denotes |
Survival |
T8638 |
19831-19837 |
NNS |
denotes |
curves |
T8639 |
19838-19847 |
VBP |
denotes |
represent |
T8640 |
19925-19933 |
VBN |
denotes |
included |
T8641 |
19848-19850 |
DT |
denotes |
an |
T8642 |
19851-19858 |
NN |
denotes |
average |
T8643 |
19859-19861 |
IN |
denotes |
of |
T8644 |
19862-19866 |
CD |
denotes |
four |
T8645 |
19879-19890 |
NNS |
denotes |
experiments |
T8646 |
19867-19878 |
JJ |
denotes |
independent |
T8647 |
19890-19891 |
: |
denotes |
; |
T8648 |
19892-19893 |
CD |
denotes |
1 |
T8649 |
19894-19895 |
CD |
denotes |
2 |
T8650 |
19893-19894 |
SYM |
denotes |
– |
T8651 |
19901-19906 |
NNS |
denotes |
lines |
T8652 |
19896-19900 |
NN |
denotes |
cell |
T8653 |
19907-19910 |
IN |
denotes |
per |
T8654 |
19911-19919 |
NN |
denotes |
genotype |
T8655 |
19920-19924 |
VBD |
denotes |
were |
T8656 |
19934-19936 |
IN |
denotes |
in |
T8657 |
19937-19941 |
DT |
denotes |
each |
T8658 |
19942-19952 |
NN |
denotes |
experiment |
T8659 |
19952-19953 |
. |
denotes |
. |
T8660 |
19953-19998 |
sentence |
denotes |
Error bars indicate SEM between experiments. |
T8661 |
19954-19959 |
NN |
denotes |
Error |
T8662 |
19960-19964 |
NNS |
denotes |
bars |
T8663 |
19965-19973 |
VBP |
denotes |
indicate |
T8664 |
19974-19977 |
NN |
denotes |
SEM |
T8665 |
19978-19985 |
IN |
denotes |
between |
T8666 |
19986-19997 |
NNS |
denotes |
experiments |
T8667 |
19997-19998 |
. |
denotes |
. |
T8668 |
19998-20045 |
sentence |
denotes |
(B) UV-UDS, a measure of global genome repair. |
T8669 |
19999-20000 |
-LRB- |
denotes |
( |
T8670 |
20000-20001 |
LS |
denotes |
B |
T8671 |
20006-20009 |
NN |
denotes |
UDS |
T8672 |
20001-20002 |
-RRB- |
denotes |
) |
T8673 |
20003-20005 |
NN |
denotes |
UV |
T8674 |
20005-20006 |
HYPH |
denotes |
- |
T8675 |
20009-20011 |
, |
denotes |
, |
T8676 |
20011-20012 |
DT |
denotes |
a |
T8677 |
20013-20020 |
NN |
denotes |
measure |
T8678 |
20021-20023 |
IN |
denotes |
of |
T8679 |
20024-20030 |
JJ |
denotes |
global |
T8680 |
20038-20044 |
NN |
denotes |
repair |
T8681 |
20031-20037 |
NN |
denotes |
genome |
T8682 |
20044-20045 |
. |
denotes |
. |
T8683 |
20045-20214 |
sentence |
denotes |
Number of experiments: n = 15 (XpdTTD/TTD), n = 6 (XpdTTD/KO), n = 4 (XpdTTD/†XPCS ), n = 2 (XpdTTD/†XP ); 1–2 cell lines per genotype were included in each experiment. |
T8684 |
20046-20052 |
NN |
denotes |
Number |
T8685 |
20186-20194 |
VBN |
denotes |
included |
T8686 |
20053-20055 |
IN |
denotes |
of |
T8687 |
20056-20067 |
NNS |
denotes |
experiments |
T8688 |
20067-20069 |
: |
denotes |
: |
T8689 |
20069-20070 |
NN |
denotes |
n |
T8690 |
20073-20075 |
CD |
denotes |
15 |
T8691 |
20071-20072 |
SYM |
denotes |
= |
T8692 |
20076-20077 |
-LRB- |
denotes |
( |
T8693 |
20077-20083 |
NN |
denotes |
XpdTTD |
T8694 |
20083-20084 |
SYM |
denotes |
/ |
T8695 |
20084-20087 |
NN |
denotes |
TTD |
T8696 |
20087-20088 |
-RRB- |
denotes |
) |
T8697 |
20088-20090 |
, |
denotes |
, |
T8698 |
20090-20091 |
NN |
denotes |
n |
T8699 |
20094-20095 |
CD |
denotes |
6 |
T8700 |
20092-20093 |
SYM |
denotes |
= |
T8701 |
20096-20097 |
-LRB- |
denotes |
( |
T8702 |
20104-20106 |
NN |
denotes |
KO |
T8703 |
20097-20103 |
NN |
denotes |
XpdTTD |
T8704 |
20103-20104 |
HYPH |
denotes |
/ |
T8705 |
20106-20107 |
-RRB- |
denotes |
) |
T8706 |
20107-20109 |
, |
denotes |
, |
T8707 |
20109-20110 |
NN |
denotes |
n |
T8708 |
20113-20114 |
CD |
denotes |
4 |
T8709 |
20111-20112 |
SYM |
denotes |
= |
T8710 |
20115-20116 |
-LRB- |
denotes |
( |
T8711 |
20123-20128 |
NN |
denotes |
†XPCS |
T8712 |
20116-20122 |
NN |
denotes |
XpdTTD |
T8713 |
20122-20123 |
HYPH |
denotes |
/ |
T8714 |
20129-20130 |
-RRB- |
denotes |
) |
T8715 |
20130-20132 |
, |
denotes |
, |
T8716 |
20132-20133 |
NN |
denotes |
n |
T8717 |
20136-20137 |
CD |
denotes |
2 |
T8718 |
20134-20135 |
SYM |
denotes |
= |
T8719 |
20138-20139 |
-LRB- |
denotes |
( |
T8720 |
20146-20149 |
NN |
denotes |
†XP |
T8721 |
20139-20145 |
NN |
denotes |
XpdTTD |
T8722 |
20145-20146 |
HYPH |
denotes |
/ |
T8723 |
20150-20151 |
-RRB- |
denotes |
) |
T8724 |
20151-20152 |
: |
denotes |
; |
T8725 |
20153-20154 |
CD |
denotes |
1 |
T8726 |
20155-20156 |
CD |
denotes |
2 |
T8727 |
20154-20155 |
SYM |
denotes |
– |
T8728 |
20162-20167 |
NNS |
denotes |
lines |
T8729 |
20157-20161 |
NN |
denotes |
cell |
T8730 |
20168-20171 |
IN |
denotes |
per |
T8731 |
20172-20180 |
NN |
denotes |
genotype |
T8732 |
20181-20185 |
VBD |
denotes |
were |
T8733 |
20195-20197 |
IN |
denotes |
in |
T8734 |
20198-20202 |
DT |
denotes |
each |
T8735 |
20203-20213 |
NN |
denotes |
experiment |
T8736 |
20213-20214 |
. |
denotes |
. |
T8737 |
20214-20334 |
sentence |
denotes |
The asterisk indicates significant difference with XpdTTD/TTD; crosses indicate significant differences with XpdTTD/KO. |
T8738 |
20215-20218 |
DT |
denotes |
The |
T8739 |
20219-20227 |
NN |
denotes |
asterisk |
T8740 |
20228-20237 |
VBZ |
denotes |
indicates |
T8741 |
20286-20294 |
VBP |
denotes |
indicate |
T8742 |
20238-20249 |
JJ |
denotes |
significant |
T8743 |
20250-20260 |
NN |
denotes |
difference |
T8744 |
20261-20265 |
IN |
denotes |
with |
T8745 |
20266-20272 |
NN |
denotes |
XpdTTD |
T8746 |
20273-20276 |
NN |
denotes |
TTD |
T8747 |
20272-20273 |
HYPH |
denotes |
/ |
T8748 |
20276-20277 |
: |
denotes |
; |
T8749 |
20278-20285 |
NNS |
denotes |
crosses |
T8750 |
20295-20306 |
JJ |
denotes |
significant |
T8751 |
20307-20318 |
NNS |
denotes |
differences |
T8752 |
20319-20323 |
IN |
denotes |
with |
T8753 |
20324-20330 |
NN |
denotes |
XpdTTD |
T8754 |
20331-20333 |
NN |
denotes |
KO |
T8755 |
20330-20331 |
HYPH |
denotes |
/ |
T8756 |
20333-20334 |
. |
denotes |
. |
T8757 |
20334-20411 |
sentence |
denotes |
(C) UV-RRS, a measure of transcription-coupled repair of UV-induced lesions. |
T8758 |
20335-20336 |
-LRB- |
denotes |
( |
T8759 |
20336-20337 |
LS |
denotes |
C |
T8760 |
20342-20345 |
NN |
denotes |
RRS |
T8761 |
20337-20338 |
-RRB- |
denotes |
) |
T8762 |
20339-20341 |
NN |
denotes |
UV |
T8763 |
20341-20342 |
HYPH |
denotes |
- |
T8764 |
20345-20347 |
, |
denotes |
, |
T8765 |
20347-20348 |
DT |
denotes |
a |
T8766 |
20349-20356 |
NN |
denotes |
measure |
T8767 |
20357-20359 |
IN |
denotes |
of |
T8768 |
20360-20373 |
NN |
denotes |
transcription |
T8769 |
20374-20381 |
VBN |
denotes |
coupled |
T8770 |
20373-20374 |
HYPH |
denotes |
- |
T8771 |
20382-20388 |
NN |
denotes |
repair |
T8772 |
20389-20391 |
IN |
denotes |
of |
T8773 |
20392-20394 |
NN |
denotes |
UV |
T8774 |
20395-20402 |
VBN |
denotes |
induced |
T8775 |
20394-20395 |
HYPH |
denotes |
- |
T8776 |
20403-20410 |
NNS |
denotes |
lesions |
T8777 |
20410-20411 |
. |
denotes |
. |
T8778 |
20411-20579 |
sentence |
denotes |
Number of experiments: n = 7 (XpdTTD/TTD), n = 2 (XpdTTD/KO), n = 4 (XpdTTD/†XPCS ), n = 2 (XpdTTD/†XP ); 1–2 cell lines per genotype were included in each experiment. |
T8779 |
20412-20418 |
NN |
denotes |
Number |
T8780 |
20551-20559 |
VBN |
denotes |
included |
T8781 |
20419-20421 |
IN |
denotes |
of |
T8782 |
20422-20433 |
NNS |
denotes |
experiments |
T8783 |
20433-20435 |
: |
denotes |
: |
T8784 |
20435-20436 |
NN |
denotes |
n |
T8785 |
20439-20440 |
CD |
denotes |
7 |
T8786 |
20437-20438 |
SYM |
denotes |
= |
T8787 |
20441-20442 |
-LRB- |
denotes |
( |
T8788 |
20449-20452 |
NN |
denotes |
TTD |
T8789 |
20442-20448 |
NN |
denotes |
XpdTTD |
T8790 |
20448-20449 |
HYPH |
denotes |
/ |
T8791 |
20452-20453 |
-RRB- |
denotes |
) |
T8792 |
20453-20455 |
, |
denotes |
, |
T8793 |
20455-20456 |
NN |
denotes |
n |
T8794 |
20459-20460 |
CD |
denotes |
2 |
T8795 |
20457-20458 |
SYM |
denotes |
= |
T8796 |
20461-20462 |
-LRB- |
denotes |
( |
T8797 |
20469-20471 |
NN |
denotes |
KO |
T8798 |
20462-20468 |
NN |
denotes |
XpdTTD |
T8799 |
20468-20469 |
HYPH |
denotes |
/ |
T8800 |
20471-20472 |
-RRB- |
denotes |
) |
T8801 |
20472-20474 |
, |
denotes |
, |
T8802 |
20474-20475 |
NN |
denotes |
n |
T8803 |
20478-20479 |
CD |
denotes |
4 |
T8804 |
20476-20477 |
SYM |
denotes |
= |
T8805 |
20480-20481 |
-LRB- |
denotes |
( |
T8806 |
20488-20493 |
NN |
denotes |
†XPCS |
T8807 |
20481-20487 |
NN |
denotes |
XpdTTD |
T8808 |
20487-20488 |
HYPH |
denotes |
/ |
T8809 |
20494-20495 |
-RRB- |
denotes |
) |
T8810 |
20495-20497 |
, |
denotes |
, |
T8811 |
20497-20498 |
NN |
denotes |
n |
T8812 |
20501-20502 |
CD |
denotes |
2 |
T8813 |
20499-20500 |
SYM |
denotes |
= |
T8814 |
20503-20504 |
-LRB- |
denotes |
( |
T8815 |
20511-20514 |
NN |
denotes |
†XP |
T8816 |
20504-20510 |
NN |
denotes |
XpdTTD |
T8817 |
20510-20511 |
HYPH |
denotes |
/ |
T8818 |
20515-20516 |
-RRB- |
denotes |
) |
T8819 |
20516-20517 |
: |
denotes |
; |
T8820 |
20518-20519 |
CD |
denotes |
1 |
T8821 |
20520-20521 |
CD |
denotes |
2 |
T8822 |
20519-20520 |
SYM |
denotes |
– |
T8823 |
20527-20532 |
NNS |
denotes |
lines |
T8824 |
20522-20526 |
NN |
denotes |
cell |
T8825 |
20533-20536 |
IN |
denotes |
per |
T8826 |
20537-20545 |
NN |
denotes |
genotype |
T8827 |
20546-20550 |
VBD |
denotes |
were |
T8828 |
20560-20562 |
IN |
denotes |
in |
T8829 |
20563-20567 |
DT |
denotes |
each |
T8830 |
20568-20578 |
NN |
denotes |
experiment |
T8831 |
20578-20579 |
. |
denotes |
. |
T8832 |
20579-20686 |
sentence |
denotes |
(D) Incision/excision activity of combinations of altered TFIIH complexes in a reconstituted NER reaction. |
T8833 |
20580-20581 |
-LRB- |
denotes |
( |
T8834 |
20581-20582 |
LS |
denotes |
D |
T8835 |
20602-20610 |
NN |
denotes |
activity |
T8836 |
20582-20583 |
-RRB- |
denotes |
) |
T8837 |
20584-20592 |
NN |
denotes |
Incision |
T8838 |
20593-20601 |
NN |
denotes |
excision |
T8839 |
20592-20593 |
HYPH |
denotes |
/ |
T8840 |
20611-20613 |
IN |
denotes |
of |
T8841 |
20614-20626 |
NNS |
denotes |
combinations |
T8842 |
20627-20629 |
IN |
denotes |
of |
T8843 |
20630-20637 |
VBN |
denotes |
altered |
T8844 |
20644-20653 |
NNS |
denotes |
complexes |
T8845 |
20638-20643 |
NN |
denotes |
TFIIH |
T8846 |
20654-20656 |
IN |
denotes |
in |
T8847 |
20657-20658 |
DT |
denotes |
a |
T8848 |
20677-20685 |
NN |
denotes |
reaction |
T8849 |
20659-20672 |
VBN |
denotes |
reconstituted |
T8850 |
20673-20676 |
NN |
denotes |
NER |
T8851 |
20685-20686 |
. |
denotes |
. |
T8852 |
20686-20940 |
sentence |
denotes |
Equal amounts of single or mixed populations of recombinant TFIIHs (containing XPD, XPB, p62, p52, His-p44, Flag-p34, cdk7, cyclin H, Mat1, and p8) were mixed with recombinant XPG, XPF/ERCC1, XPC/hHR23B, RPA, and a radiolabelled synthetic NER substrate. |
T8853 |
20687-20692 |
JJ |
denotes |
Equal |
T8854 |
20693-20700 |
NNS |
denotes |
amounts |
T8855 |
20840-20845 |
VBN |
denotes |
mixed |
T8856 |
20701-20703 |
IN |
denotes |
of |
T8857 |
20704-20710 |
JJ |
denotes |
single |
T8858 |
20720-20731 |
NNS |
denotes |
populations |
T8859 |
20711-20713 |
CC |
denotes |
or |
T8860 |
20714-20719 |
JJ |
denotes |
mixed |
T8861 |
20732-20734 |
IN |
denotes |
of |
T8862 |
20735-20746 |
JJ |
denotes |
recombinant |
T8863 |
20747-20753 |
NNS |
denotes |
TFIIHs |
T8864 |
20754-20755 |
-LRB- |
denotes |
( |
T8865 |
20755-20765 |
VBG |
denotes |
containing |
T8866 |
20766-20769 |
NN |
denotes |
XPD |
T8867 |
20769-20771 |
, |
denotes |
, |
T8868 |
20771-20774 |
NN |
denotes |
XPB |
T8869 |
20774-20776 |
, |
denotes |
, |
T8870 |
20776-20779 |
NN |
denotes |
p62 |
T8871 |
20779-20781 |
, |
denotes |
, |
T8872 |
20781-20784 |
NN |
denotes |
p52 |
T8873 |
20784-20786 |
, |
denotes |
, |
T8874 |
20786-20789 |
NN |
denotes |
His |
T8875 |
20790-20793 |
NN |
denotes |
p44 |
T8876 |
20789-20790 |
HYPH |
denotes |
- |
T8877 |
20793-20795 |
, |
denotes |
, |
T8878 |
20795-20799 |
NN |
denotes |
Flag |
T8879 |
20800-20803 |
NN |
denotes |
p34 |
T8880 |
20799-20800 |
HYPH |
denotes |
- |
T8881 |
20803-20805 |
, |
denotes |
, |
T8882 |
20805-20809 |
NN |
denotes |
cdk7 |
T8883 |
20809-20811 |
, |
denotes |
, |
T8884 |
20811-20817 |
NN |
denotes |
cyclin |
T8885 |
20818-20819 |
NN |
denotes |
H |
T8886 |
20819-20821 |
, |
denotes |
, |
T8887 |
20821-20825 |
NN |
denotes |
Mat1 |
T8888 |
20825-20827 |
, |
denotes |
, |
T8889 |
20827-20830 |
CC |
denotes |
and |
T8890 |
20831-20833 |
NN |
denotes |
p8 |
T8891 |
20833-20834 |
-RRB- |
denotes |
) |
T8892 |
20835-20839 |
VBD |
denotes |
were |
T8893 |
20846-20850 |
IN |
denotes |
with |
T8894 |
20851-20862 |
JJ |
denotes |
recombinant |
T8895 |
20863-20866 |
NN |
denotes |
XPG |
T8896 |
20866-20868 |
, |
denotes |
, |
T8897 |
20868-20871 |
NN |
denotes |
XPF |
T8898 |
20872-20877 |
NN |
denotes |
ERCC1 |
T8899 |
20871-20872 |
HYPH |
denotes |
/ |
T8900 |
20877-20879 |
, |
denotes |
, |
T8901 |
20879-20882 |
NN |
denotes |
XPC |
T8902 |
20883-20889 |
NN |
denotes |
hHR23B |
T8903 |
20882-20883 |
HYPH |
denotes |
/ |
T8904 |
20889-20891 |
, |
denotes |
, |
T8905 |
20891-20894 |
NN |
denotes |
RPA |
T8906 |
20894-20896 |
, |
denotes |
, |
T8907 |
20896-20899 |
CC |
denotes |
and |
T8908 |
20900-20901 |
DT |
denotes |
a |
T8909 |
20930-20939 |
NN |
denotes |
substrate |
T8910 |
20902-20915 |
VBN |
denotes |
radiolabelled |
T8911 |
20916-20925 |
JJ |
denotes |
synthetic |
T8912 |
20926-20929 |
NN |
denotes |
NER |
T8913 |
20939-20940 |
. |
denotes |
. |
T8914 |
20940-21083 |
sentence |
denotes |
The excision products (26–34 nucleotides in length) were visualised at nucleotide resolution on a denaturing polyacrylamide gel as indicated . |
T8915 |
20941-20944 |
DT |
denotes |
The |
T8916 |
20954-20962 |
NNS |
denotes |
products |
T8917 |
20945-20953 |
NN |
denotes |
excision |
T8918 |
20998-21008 |
VBN |
denotes |
visualised |
T8919 |
20963-20964 |
-LRB- |
denotes |
( |
T8920 |
20970-20981 |
NNS |
denotes |
nucleotides |
T8921 |
20964-20966 |
CD |
denotes |
26 |
T8922 |
20967-20969 |
CD |
denotes |
34 |
T8923 |
20966-20967 |
SYM |
denotes |
– |
T8924 |
20982-20984 |
IN |
denotes |
in |
T8925 |
20985-20991 |
NN |
denotes |
length |
T8926 |
20991-20992 |
-RRB- |
denotes |
) |
T8927 |
20993-20997 |
VBD |
denotes |
were |
T8928 |
21009-21011 |
IN |
denotes |
at |
T8929 |
21012-21022 |
NN |
denotes |
nucleotide |
T8930 |
21023-21033 |
NN |
denotes |
resolution |
T8931 |
21034-21036 |
IN |
denotes |
on |
T8932 |
21037-21038 |
DT |
denotes |
a |
T8933 |
21065-21068 |
NN |
denotes |
gel |
T8934 |
21039-21049 |
VBG |
denotes |
denaturing |
T8935 |
21050-21064 |
NN |
denotes |
polyacrylamide |
T8936 |
21069-21071 |
IN |
denotes |
as |
T8937 |
21072-21081 |
VBN |
denotes |
indicated |
T8938 |
21082-21083 |
. |
denotes |
. |
T8939 |
21083-21234 |
sentence |
denotes |
Note the weak activity corresponding to each single and combined TFIIH complex (lanes 3–8) relative to the wt (lane 1) and negative controls (lane 2). |
T8940 |
21084-21088 |
VB |
denotes |
Note |
T8941 |
21089-21092 |
DT |
denotes |
the |
T8942 |
21098-21106 |
NN |
denotes |
activity |
T8943 |
21093-21097 |
JJ |
denotes |
weak |
T8944 |
21107-21120 |
VBG |
denotes |
corresponding |
T8945 |
21121-21123 |
IN |
denotes |
to |
T8946 |
21124-21128 |
DT |
denotes |
each |
T8947 |
21155-21162 |
NN |
denotes |
complex |
T8948 |
21129-21135 |
JJ |
denotes |
single |
T8949 |
21136-21139 |
CC |
denotes |
and |
T8950 |
21140-21148 |
VBN |
denotes |
combined |
T8951 |
21149-21154 |
NN |
denotes |
TFIIH |
T8952 |
21163-21164 |
-LRB- |
denotes |
( |
T8953 |
21170-21171 |
CD |
denotes |
3 |
T8954 |
21164-21169 |
NNS |
denotes |
lanes |
T8955 |
21171-21172 |
SYM |
denotes |
– |
T8956 |
21172-21173 |
CD |
denotes |
8 |
T8957 |
21173-21174 |
-RRB- |
denotes |
) |
T8958 |
21175-21183 |
JJ |
denotes |
relative |
T8959 |
21184-21186 |
IN |
denotes |
to |
T8960 |
21187-21190 |
DT |
denotes |
the |
T8961 |
21191-21193 |
NN |
denotes |
wt |
T8962 |
21194-21195 |
-LRB- |
denotes |
( |
T8963 |
21195-21199 |
NN |
denotes |
lane |
T8964 |
21200-21201 |
CD |
denotes |
1 |
T8965 |
21201-21202 |
-RRB- |
denotes |
) |
T8966 |
21203-21206 |
CC |
denotes |
and |
T8967 |
21207-21215 |
JJ |
denotes |
negative |
T8968 |
21216-21224 |
NNS |
denotes |
controls |
T8969 |
21225-21226 |
-LRB- |
denotes |
( |
T8970 |
21226-21230 |
NN |
denotes |
lane |
T8971 |
21231-21232 |
CD |
denotes |
2 |
T8972 |
21232-21233 |
-RRB- |
denotes |
) |
T8973 |
21233-21234 |
. |
denotes |
. |
T8974 |
21234-21447 |
sentence |
denotes |
(E) Xpd dose-dependent reduction of TFIIH in homozygous XpdTTD/TTD, hemizygous XpdTTD/KO, and compound heterozygous XpdTTD/†XPCS and XpdTTD/†XP cells by comparative immunofluorescence of the p62 subunit of TFIIH. |
T8975 |
21235-21236 |
-LRB- |
denotes |
( |
T8976 |
21236-21237 |
LS |
denotes |
E |
T8977 |
21258-21267 |
NN |
denotes |
reduction |
T8978 |
21237-21238 |
-RRB- |
denotes |
) |
T8979 |
21239-21242 |
NN |
denotes |
Xpd |
T8980 |
21243-21247 |
NN |
denotes |
dose |
T8981 |
21248-21257 |
JJ |
denotes |
dependent |
T8982 |
21247-21248 |
HYPH |
denotes |
- |
T8983 |
21268-21270 |
IN |
denotes |
of |
T8984 |
21271-21276 |
NN |
denotes |
TFIIH |
T8985 |
21277-21279 |
IN |
denotes |
in |
T8986 |
21280-21290 |
JJ |
denotes |
homozygous |
T8987 |
21298-21301 |
NN |
denotes |
TTD |
T8988 |
21291-21297 |
NN |
denotes |
XpdTTD |
T8989 |
21297-21298 |
HYPH |
denotes |
/ |
T8990 |
21379-21384 |
NNS |
denotes |
cells |
T8991 |
21301-21303 |
, |
denotes |
, |
T8992 |
21303-21313 |
JJ |
denotes |
hemizygous |
T8993 |
21321-21323 |
NN |
denotes |
KO |
T8994 |
21314-21320 |
NN |
denotes |
XpdTTD |
T8995 |
21320-21321 |
HYPH |
denotes |
/ |
T8996 |
21323-21325 |
, |
denotes |
, |
T8997 |
21325-21328 |
CC |
denotes |
and |
T8998 |
21329-21337 |
NN |
denotes |
compound |
T8999 |
21358-21363 |
NN |
denotes |
†XPCS |
T9000 |
21338-21350 |
JJ |
denotes |
heterozygous |
T9001 |
21351-21357 |
NN |
denotes |
XpdTTD |
T9002 |
21357-21358 |
HYPH |
denotes |
/ |
T9003 |
21364-21367 |
CC |
denotes |
and |
T9004 |
21368-21374 |
NN |
denotes |
XpdTTD |
T9005 |
21375-21378 |
NN |
denotes |
†XP |
T9006 |
21374-21375 |
HYPH |
denotes |
/ |
T9007 |
21385-21387 |
IN |
denotes |
by |
T9008 |
21388-21399 |
JJ |
denotes |
comparative |
T9009 |
21400-21418 |
NN |
denotes |
immunofluorescence |
T9010 |
21419-21421 |
IN |
denotes |
of |
T9011 |
21422-21425 |
DT |
denotes |
the |
T9012 |
21430-21437 |
NN |
denotes |
subunit |
T9013 |
21426-21429 |
NN |
denotes |
p62 |
T9014 |
21438-21440 |
IN |
denotes |
of |
T9015 |
21441-21446 |
NN |
denotes |
TFIIH |
T9016 |
21446-21447 |
. |
denotes |
. |
T9017 |
21447-21865 |
sentence |
denotes |
Roman numerals represent different microscopic slides and Arabic numerals different cell lines labelled as follows: (I) wt cells (1) labelled with 2-μm beads, XpdTTD/TTD cells (2) with 0.79-μm beads, and XpdTTD/KO cells (3) with no beads; (II) wt cells (1) labelled with 0.79-μm beads and XpdTTD/†XPCS cells (4) with no beads; and (III) wt cells (1) labelled with 0.79-μm beads and XpdTTD/†XP cells (5) with no beads. |
T9018 |
21448-21453 |
JJ |
denotes |
Roman |
T9019 |
21454-21462 |
NNS |
denotes |
numerals |
T9020 |
21463-21472 |
VBP |
denotes |
represent |
T9021 |
21473-21482 |
JJ |
denotes |
different |
T9022 |
21495-21501 |
NNS |
denotes |
slides |
T9023 |
21483-21494 |
JJ |
denotes |
microscopic |
T9024 |
21502-21505 |
CC |
denotes |
and |
T9025 |
21506-21512 |
JJ |
denotes |
Arabic |
T9026 |
21513-21521 |
NNS |
denotes |
numerals |
T9027 |
21537-21542 |
NNS |
denotes |
lines |
T9028 |
21522-21531 |
JJ |
denotes |
different |
T9029 |
21532-21536 |
NN |
denotes |
cell |
T9030 |
21543-21551 |
VBN |
denotes |
labelled |
T9031 |
21552-21554 |
IN |
denotes |
as |
T9032 |
21555-21562 |
VBZ |
denotes |
follows |
T9033 |
21562-21564 |
: |
denotes |
: |
T9034 |
21564-21565 |
-LRB- |
denotes |
( |
T9035 |
21565-21566 |
LS |
denotes |
I |
T9036 |
21571-21576 |
NNS |
denotes |
cells |
T9037 |
21566-21567 |
-RRB- |
denotes |
) |
T9038 |
21568-21570 |
NN |
denotes |
wt |
T9039 |
21577-21578 |
-LRB- |
denotes |
( |
T9040 |
21578-21579 |
CD |
denotes |
1 |
T9041 |
21579-21580 |
-RRB- |
denotes |
) |
T9042 |
21581-21589 |
VBN |
denotes |
labelled |
T9043 |
21590-21594 |
IN |
denotes |
with |
T9044 |
21595-21596 |
CD |
denotes |
2 |
T9045 |
21597-21599 |
NN |
denotes |
μm |
T9046 |
21596-21597 |
HYPH |
denotes |
- |
T9047 |
21600-21605 |
NNS |
denotes |
beads |
T9048 |
21605-21607 |
, |
denotes |
, |
T9049 |
21607-21613 |
NN |
denotes |
XpdTTD |
T9050 |
21614-21617 |
NN |
denotes |
TTD |
T9051 |
21613-21614 |
HYPH |
denotes |
/ |
T9052 |
21618-21623 |
NNS |
denotes |
cells |
T9053 |
21624-21625 |
-LRB- |
denotes |
( |
T9054 |
21625-21626 |
CD |
denotes |
2 |
T9055 |
21626-21627 |
-RRB- |
denotes |
) |
T9056 |
21628-21632 |
IN |
denotes |
with |
T9057 |
21633-21637 |
CD |
denotes |
0.79 |
T9058 |
21638-21640 |
NN |
denotes |
μm |
T9059 |
21637-21638 |
HYPH |
denotes |
- |
T9060 |
21641-21646 |
NNS |
denotes |
beads |
T9061 |
21646-21648 |
, |
denotes |
, |
T9062 |
21648-21651 |
CC |
denotes |
and |
T9063 |
21652-21658 |
NN |
denotes |
XpdTTD |
T9064 |
21659-21661 |
NN |
denotes |
KO |
T9065 |
21658-21659 |
HYPH |
denotes |
/ |
T9066 |
21662-21667 |
NNS |
denotes |
cells |
T9067 |
21668-21669 |
-LRB- |
denotes |
( |
T9068 |
21669-21670 |
CD |
denotes |
3 |
T9069 |
21670-21671 |
-RRB- |
denotes |
) |
T9070 |
21672-21676 |
IN |
denotes |
with |
T9071 |
21677-21679 |
DT |
denotes |
no |
T9072 |
21680-21685 |
NNS |
denotes |
beads |
T9073 |
21685-21686 |
: |
denotes |
; |
T9074 |
21687-21688 |
-LRB- |
denotes |
( |
T9075 |
21688-21690 |
LS |
denotes |
II |
T9076 |
21695-21700 |
NNS |
denotes |
cells |
T9077 |
21690-21691 |
-RRB- |
denotes |
) |
T9078 |
21692-21694 |
NN |
denotes |
wt |
T9079 |
21701-21702 |
-LRB- |
denotes |
( |
T9080 |
21702-21703 |
CD |
denotes |
1 |
T9081 |
21703-21704 |
-RRB- |
denotes |
) |
T9082 |
21705-21713 |
VBN |
denotes |
labelled |
T9083 |
21714-21718 |
IN |
denotes |
with |
T9084 |
21719-21723 |
CD |
denotes |
0.79 |
T9085 |
21724-21726 |
NN |
denotes |
μm |
T9086 |
21723-21724 |
HYPH |
denotes |
- |
T9087 |
21727-21732 |
NNS |
denotes |
beads |
T9088 |
21733-21736 |
CC |
denotes |
and |
T9089 |
21737-21743 |
NN |
denotes |
XpdTTD |
T9090 |
21744-21749 |
NN |
denotes |
†XPCS |
T9091 |
21743-21744 |
HYPH |
denotes |
/ |
T9092 |
21750-21755 |
NNS |
denotes |
cells |
T9093 |
21756-21757 |
-LRB- |
denotes |
( |
T9094 |
21757-21758 |
CD |
denotes |
4 |
T9095 |
21758-21759 |
-RRB- |
denotes |
) |
T9096 |
21760-21764 |
IN |
denotes |
with |
T9097 |
21765-21767 |
DT |
denotes |
no |
T9098 |
21768-21773 |
NNS |
denotes |
beads |
T9099 |
21773-21774 |
: |
denotes |
; |
T9100 |
21775-21778 |
CC |
denotes |
and |
T9101 |
21779-21780 |
-LRB- |
denotes |
( |
T9102 |
21780-21783 |
LS |
denotes |
III |
T9103 |
21788-21793 |
NNS |
denotes |
cells |
T9104 |
21783-21784 |
-RRB- |
denotes |
) |
T9105 |
21785-21787 |
NN |
denotes |
wt |
T9106 |
21794-21795 |
-LRB- |
denotes |
( |
T9107 |
21795-21796 |
CD |
denotes |
1 |
T9108 |
21796-21797 |
-RRB- |
denotes |
) |
T9109 |
21798-21806 |
VBN |
denotes |
labelled |
T9110 |
21807-21811 |
IN |
denotes |
with |
T9111 |
21812-21816 |
CD |
denotes |
0.79 |
T9112 |
21817-21819 |
NN |
denotes |
μm |
T9113 |
21816-21817 |
HYPH |
denotes |
- |
T9114 |
21820-21825 |
NNS |
denotes |
beads |
T9115 |
21826-21829 |
CC |
denotes |
and |
T9116 |
21830-21836 |
NN |
denotes |
XpdTTD |
T9117 |
21837-21840 |
NN |
denotes |
†XP |
T9118 |
21836-21837 |
HYPH |
denotes |
/ |
T9119 |
21841-21846 |
NNS |
denotes |
cells |
T9120 |
21847-21848 |
-LRB- |
denotes |
( |
T9121 |
21848-21849 |
CD |
denotes |
5 |
T9122 |
21849-21850 |
-RRB- |
denotes |
) |
T9123 |
21851-21855 |
IN |
denotes |
with |
T9124 |
21856-21858 |
DT |
denotes |
no |
T9125 |
21859-21864 |
NNS |
denotes |
beads |
T9126 |
21864-21865 |
. |
denotes |
. |
T9127 |
21865-21984 |
sentence |
denotes |
(F) Quantification of immunofluorescent signal from at least 50 nuclei per cell line and 2–6 experiments per genotype. |
T9128 |
21866-21867 |
-LRB- |
denotes |
( |
T9129 |
21867-21868 |
LS |
denotes |
F |
T9130 |
21870-21884 |
NN |
denotes |
Quantification |
T9131 |
21868-21869 |
-RRB- |
denotes |
) |
T9132 |
21885-21887 |
IN |
denotes |
of |
T9133 |
21888-21905 |
JJ |
denotes |
immunofluorescent |
T9134 |
21906-21912 |
NN |
denotes |
signal |
T9135 |
21913-21917 |
IN |
denotes |
from |
T9136 |
21918-21920 |
RB |
denotes |
at |
T9137 |
21927-21929 |
CD |
denotes |
50 |
T9138 |
21921-21926 |
RBS |
denotes |
least |
T9139 |
21930-21936 |
NNS |
denotes |
nuclei |
T9140 |
21937-21940 |
IN |
denotes |
per |
T9141 |
21941-21945 |
NN |
denotes |
cell |
T9142 |
21946-21950 |
NN |
denotes |
line |
T9143 |
21951-21954 |
CC |
denotes |
and |
T9144 |
21955-21956 |
CD |
denotes |
2 |
T9145 |
21957-21958 |
CD |
denotes |
6 |
T9146 |
21956-21957 |
SYM |
denotes |
– |
T9147 |
21959-21970 |
NNS |
denotes |
experiments |
T9148 |
21971-21974 |
IN |
denotes |
per |
T9149 |
21975-21983 |
NN |
denotes |
genotype |
T9150 |
21983-21984 |
. |
denotes |
. |
T9151 |
21984-22095 |
sentence |
denotes |
Bars representing cells analysed on the same microscopic slide are depicted side by side, with wt set at 100%. |
T9152 |
21985-21989 |
NNS |
denotes |
Bars |
T9153 |
22052-22060 |
VBN |
denotes |
depicted |
T9154 |
21990-22002 |
VBG |
denotes |
representing |
T9155 |
22003-22008 |
NNS |
denotes |
cells |
T9156 |
22009-22017 |
VBN |
denotes |
analysed |
T9157 |
22018-22020 |
IN |
denotes |
on |
T9158 |
22021-22024 |
DT |
denotes |
the |
T9159 |
22042-22047 |
NN |
denotes |
slide |
T9160 |
22025-22029 |
JJ |
denotes |
same |
T9161 |
22030-22041 |
JJ |
denotes |
microscopic |
T9162 |
22048-22051 |
VBP |
denotes |
are |
T9163 |
22061-22065 |
NN |
denotes |
side |
T9164 |
22066-22068 |
IN |
denotes |
by |
T9165 |
22069-22073 |
NN |
denotes |
side |
T9166 |
22073-22075 |
, |
denotes |
, |
T9167 |
22075-22079 |
IN |
denotes |
with |
T9168 |
22080-22082 |
NN |
denotes |
wt |
T9169 |
22083-22086 |
VBN |
denotes |
set |
T9170 |
22087-22089 |
IN |
denotes |
at |
T9171 |
22090-22093 |
CD |
denotes |
100 |
T9172 |
22093-22094 |
NN |
denotes |
% |
T9173 |
22094-22095 |
. |
denotes |
. |
T9174 |
22095-22250 |
sentence |
denotes |
The p-value indicates minimum significant difference between wt and the indicated cell lines analysed on the same microscopic slide within one experiment. |
T9175 |
22096-22099 |
DT |
denotes |
The |
T9176 |
22102-22107 |
NN |
denotes |
value |
T9177 |
22100-22101 |
NN |
denotes |
p |
T9178 |
22101-22102 |
HYPH |
denotes |
- |
T9179 |
22108-22117 |
VBZ |
denotes |
indicates |
T9180 |
22118-22125 |
JJ |
denotes |
minimum |
T9181 |
22138-22148 |
NN |
denotes |
difference |
T9182 |
22126-22137 |
JJ |
denotes |
significant |
T9183 |
22149-22156 |
IN |
denotes |
between |
T9184 |
22157-22159 |
NN |
denotes |
wt |
T9185 |
22160-22163 |
CC |
denotes |
and |
T9186 |
22164-22167 |
DT |
denotes |
the |
T9187 |
22183-22188 |
NNS |
denotes |
lines |
T9188 |
22168-22177 |
VBN |
denotes |
indicated |
T9189 |
22178-22182 |
NN |
denotes |
cell |
T9190 |
22189-22197 |
VBN |
denotes |
analysed |
T9191 |
22198-22200 |
IN |
denotes |
on |
T9192 |
22201-22204 |
DT |
denotes |
the |
T9193 |
22222-22227 |
NN |
denotes |
slide |
T9194 |
22205-22209 |
JJ |
denotes |
same |
T9195 |
22210-22221 |
JJ |
denotes |
microscopic |
T9196 |
22228-22234 |
IN |
denotes |
within |
T9197 |
22235-22238 |
CD |
denotes |
one |
T9198 |
22239-22249 |
NN |
denotes |
experiment |
T9199 |
22249-22250 |
. |
denotes |
. |
T9280 |
31591-31599 |
NN |
denotes |
Genotype |
T9281 |
31600-31609 |
NN |
denotes |
Phenotype |
T9282 |
31599-31600 |
HYPH |
denotes |
– |
T9283 |
31610-31623 |
NNS |
denotes |
Relationships |
T9284 |
31624-31626 |
IN |
denotes |
in |
T9285 |
31627-31630 |
NN |
denotes |
XPD |
T9286 |
31631-31640 |
NNS |
denotes |
Disorders |
T9287 |
31640-31753 |
sentence |
denotes |
According to the current monoallelic hypothesis, phenotype is determined solely by the causative allele product. |
T9288 |
31641-31650 |
VBG |
denotes |
According |
T9289 |
31703-31713 |
VBN |
denotes |
determined |
T9290 |
31651-31653 |
IN |
denotes |
to |
T9291 |
31654-31657 |
DT |
denotes |
the |
T9292 |
31678-31688 |
NN |
denotes |
hypothesis |
T9293 |
31658-31665 |
JJ |
denotes |
current |
T9294 |
31666-31677 |
JJ |
denotes |
monoallelic |
T9295 |
31688-31690 |
, |
denotes |
, |
T9296 |
31690-31699 |
NN |
denotes |
phenotype |
T9297 |
31700-31702 |
VBZ |
denotes |
is |
T9298 |
31714-31720 |
RB |
denotes |
solely |
T9299 |
31721-31723 |
IN |
denotes |
by |
T9300 |
31724-31727 |
DT |
denotes |
the |
T9301 |
31745-31752 |
NN |
denotes |
product |
T9302 |
31728-31737 |
JJ |
denotes |
causative |
T9303 |
31738-31744 |
NN |
denotes |
allele |
T9304 |
31752-31753 |
. |
denotes |
. |
T9305 |
31753-31831 |
sentence |
denotes |
If a second, different allele is present, it is considered a functional null. |
T9306 |
31754-31756 |
IN |
denotes |
If |
T9307 |
31784-31786 |
VBZ |
denotes |
is |
T9308 |
31757-31758 |
DT |
denotes |
a |
T9309 |
31777-31783 |
NN |
denotes |
allele |
T9310 |
31759-31765 |
JJ |
denotes |
second |
T9311 |
31765-31767 |
, |
denotes |
, |
T9312 |
31767-31776 |
JJ |
denotes |
different |
T9313 |
31802-31812 |
VBN |
denotes |
considered |
T9314 |
31787-31794 |
JJ |
denotes |
present |
T9315 |
31794-31796 |
, |
denotes |
, |
T9316 |
31796-31798 |
PRP |
denotes |
it |
T9317 |
31799-31801 |
VBZ |
denotes |
is |
T9318 |
31813-31814 |
DT |
denotes |
a |
T9319 |
31826-31830 |
NN |
denotes |
null |
T9320 |
31815-31825 |
JJ |
denotes |
functional |
T9321 |
31830-31831 |
. |
denotes |
. |
T9322 |
31831-31931 |
sentence |
denotes |
There is a lack of any correlation between the site of the XPD mutation and the resulting disorder. |
T9323 |
31832-31837 |
EX |
denotes |
There |
T9324 |
31838-31840 |
VBZ |
denotes |
is |
T9325 |
31841-31842 |
DT |
denotes |
a |
T9326 |
31843-31847 |
NN |
denotes |
lack |
T9327 |
31848-31850 |
IN |
denotes |
of |
T9328 |
31851-31854 |
DT |
denotes |
any |
T9329 |
31855-31866 |
NN |
denotes |
correlation |
T9330 |
31867-31874 |
IN |
denotes |
between |
T9331 |
31875-31878 |
DT |
denotes |
the |
T9332 |
31879-31883 |
NN |
denotes |
site |
T9333 |
31884-31886 |
IN |
denotes |
of |
T9334 |
31887-31890 |
DT |
denotes |
the |
T9335 |
31895-31903 |
NN |
denotes |
mutation |
T9336 |
31891-31894 |
NN |
denotes |
XPD |
T9337 |
31904-31907 |
CC |
denotes |
and |
T9338 |
31908-31911 |
DT |
denotes |
the |
T9339 |
31922-31930 |
NN |
denotes |
disorder |
T9340 |
31912-31921 |
VBG |
denotes |
resulting |
T9341 |
31930-31931 |
. |
denotes |
. |
T9342 |
31931-32047 |
sentence |
denotes |
We propose a biallelic hypothesis for compound heterozygotes in which both alleles can contribute to the phenotype. |
T9343 |
31932-31934 |
PRP |
denotes |
We |
T9344 |
31935-31942 |
VBP |
denotes |
propose |
T9345 |
31943-31944 |
DT |
denotes |
a |
T9346 |
31955-31965 |
NN |
denotes |
hypothesis |
T9347 |
31945-31954 |
JJ |
denotes |
biallelic |
T9348 |
31966-31969 |
IN |
denotes |
for |
T9349 |
31970-31978 |
NN |
denotes |
compound |
T9350 |
31979-31992 |
NNS |
denotes |
heterozygotes |
T9351 |
31993-31995 |
IN |
denotes |
in |
T9352 |
32019-32029 |
VB |
denotes |
contribute |
T9353 |
31996-32001 |
WDT |
denotes |
which |
T9354 |
32002-32006 |
DT |
denotes |
both |
T9355 |
32007-32014 |
NNS |
denotes |
alleles |
T9356 |
32015-32018 |
MD |
denotes |
can |
T9357 |
32030-32032 |
IN |
denotes |
to |
T9358 |
32033-32036 |
DT |
denotes |
the |
T9359 |
32037-32046 |
NN |
denotes |
phenotype |
T9360 |
32046-32047 |
. |
denotes |
. |
T9361 |
32047-32284 |
sentence |
denotes |
Examples of compound heterozygous patients in which a second, presumed null allele is likely to contribute to disease outcome are provided above in comparison to corresponding homo- or hemizygous patients with the same causative allele. |
T9362 |
32048-32056 |
NNS |
denotes |
Examples |
T9363 |
32178-32186 |
VBN |
denotes |
provided |
T9364 |
32057-32059 |
IN |
denotes |
of |
T9365 |
32060-32068 |
NN |
denotes |
compound |
T9366 |
32082-32090 |
NNS |
denotes |
patients |
T9367 |
32069-32081 |
JJ |
denotes |
heterozygous |
T9368 |
32091-32093 |
IN |
denotes |
in |
T9369 |
32131-32133 |
VBZ |
denotes |
is |
T9370 |
32094-32099 |
WDT |
denotes |
which |
T9371 |
32100-32101 |
DT |
denotes |
a |
T9372 |
32124-32130 |
NN |
denotes |
allele |
T9373 |
32102-32108 |
JJ |
denotes |
second |
T9374 |
32108-32110 |
, |
denotes |
, |
T9375 |
32110-32118 |
JJ |
denotes |
presumed |
T9376 |
32119-32123 |
JJ |
denotes |
null |
T9377 |
32134-32140 |
JJ |
denotes |
likely |
T9378 |
32141-32143 |
TO |
denotes |
to |
T9379 |
32144-32154 |
VB |
denotes |
contribute |
T9380 |
32155-32157 |
IN |
denotes |
to |
T9381 |
32158-32165 |
NN |
denotes |
disease |
T9382 |
32166-32173 |
NN |
denotes |
outcome |
T9383 |
32174-32177 |
VBP |
denotes |
are |
T9384 |
32187-32192 |
RB |
denotes |
above |
T9385 |
32193-32195 |
IN |
denotes |
in |
T9386 |
32196-32206 |
NN |
denotes |
comparison |
T9387 |
32207-32209 |
IN |
denotes |
to |
T9388 |
32210-32223 |
VBG |
denotes |
corresponding |
T9389 |
32244-32252 |
NNS |
denotes |
patients |
T9390 |
32224-32228 |
AFX |
denotes |
homo |
T9391 |
32233-32243 |
JJ |
denotes |
hemizygous |
T9392 |
32228-32229 |
HYPH |
denotes |
- |
T9393 |
32230-32232 |
CC |
denotes |
or |
T9394 |
32253-32257 |
IN |
denotes |
with |
T9395 |
32258-32261 |
DT |
denotes |
the |
T9396 |
32277-32283 |
NN |
denotes |
allele |
T9397 |
32262-32266 |
JJ |
denotes |
same |
T9398 |
32267-32276 |
JJ |
denotes |
causative |
T9399 |
32283-32284 |
. |
denotes |
. |
T9400 |
32284-32355 |
sentence |
denotes |
Numbers in the schematic of the protein indicate the helicase domains. |
T9401 |
32285-32292 |
NNS |
denotes |
Numbers |
T9402 |
32325-32333 |
VBP |
denotes |
indicate |
T9403 |
32293-32295 |
IN |
denotes |
in |
T9404 |
32296-32299 |
DT |
denotes |
the |
T9405 |
32300-32309 |
NN |
denotes |
schematic |
T9406 |
32310-32312 |
IN |
denotes |
of |
T9407 |
32313-32316 |
DT |
denotes |
the |
T9408 |
32317-32324 |
NN |
denotes |
protein |
T9409 |
32334-32337 |
DT |
denotes |
the |
T9410 |
32347-32354 |
NNS |
denotes |
domains |
T9411 |
32338-32346 |
NN |
denotes |
helicase |
T9412 |
32354-32355 |
. |
denotes |
. |
T6770 |
35732-35743 |
JJ |
denotes |
Comparative |
T6771 |
35744-35762 |
NN |
denotes |
immunofluorescence |
T6772 |
35762-35763 |
. |
denotes |
. |
T6773 |
35763-35965 |
sentence |
denotes |
Latex bead labelling and comparative immunofluorescence analysis of the p62 subunit of the TFIIH was performed as described previously [16,17] using primary mouse embryonic fibroblasts at passages 2–5. |
T6774 |
35764-35769 |
NN |
denotes |
Latex |
T6775 |
35775-35784 |
NN |
denotes |
labelling |
T6776 |
35770-35774 |
NN |
denotes |
bead |
T6777 |
35865-35874 |
VBN |
denotes |
performed |
T6778 |
35785-35788 |
CC |
denotes |
and |
T6779 |
35789-35800 |
JJ |
denotes |
comparative |
T6780 |
35820-35828 |
NN |
denotes |
analysis |
T9211 |
9742-9751 |
NN |
denotes |
Frequency |
T9212 |
9752-9754 |
IN |
denotes |
of |
T9213 |
9755-9761 |
NN |
denotes |
Xpd†XP |
T9214 |
9762-9765 |
NN |
denotes |
†XP |
T9215 |
9761-9762 |
HYPH |
denotes |
/ |
T9216 |
9765-9767 |
, |
denotes |
, |
T9217 |
9767-9775 |
NN |
denotes |
Xpd†XPCS |
T9218 |
9776-9781 |
NN |
denotes |
†XPCS |
T9219 |
9775-9776 |
HYPH |
denotes |
/ |
T9220 |
9781-9783 |
, |
denotes |
, |
T9221 |
9783-9786 |
CC |
denotes |
and |
T9222 |
9787-9795 |
NN |
denotes |
Compound |
T9223 |
9816-9821 |
NN |
denotes |
†XPCS |
T9224 |
9796-9808 |
JJ |
denotes |
Heterozygous |
T9225 |
9809-9815 |
NN |
denotes |
Xpd†XP |
T9226 |
9815-9816 |
HYPH |
denotes |
/ |
T9227 |
9822-9829 |
NNS |
denotes |
Embryos |
T9228 |
9830-9833 |
CC |
denotes |
and |
T9229 |
9834-9843 |
NN |
denotes |
Offspring |
T9241 |
16154-16165 |
JJ |
denotes |
Pleiotropic |
T9242 |
16180-16187 |
NNS |
denotes |
Effects |
T9243 |
16166-16169 |
NN |
denotes |
Xpd |
T9244 |
16170-16179 |
JJ |
denotes |
Biallelic |
T9245 |
16188-16190 |
IN |
denotes |
in |
T9246 |
16191-16195 |
NNS |
denotes |
Mice |
T9247 |
16196-16199 |
CC |
denotes |
and |
T9248 |
16200-16205 |
NNS |
denotes |
Cells |
T6781 |
35801-35819 |
NN |
denotes |
immunofluorescence |
T6782 |
35829-35831 |
IN |
denotes |
of |
T6783 |
35832-35835 |
DT |
denotes |
the |
T6784 |
35840-35847 |
NN |
denotes |
subunit |
T6785 |
35836-35839 |
NN |
denotes |
p62 |
T6786 |
35848-35850 |
IN |
denotes |
of |
T6787 |
35851-35854 |
DT |
denotes |
the |
T6788 |
35855-35860 |
NN |
denotes |
TFIIH |
T6789 |
35861-35864 |
VBD |
denotes |
was |
T6790 |
35875-35877 |
IN |
denotes |
as |
T6791 |
35878-35887 |
VBN |
denotes |
described |
T6792 |
35888-35898 |
RB |
denotes |
previously |
T6793 |
35899-35900 |
-LRB- |
denotes |
[ |
T6794 |
35903-35905 |
CD |
denotes |
17 |
T6795 |
35900-35902 |
CD |
denotes |
16 |
T6796 |
35902-35903 |
, |
denotes |
, |
T6797 |
35905-35906 |
-RRB- |
denotes |
] |
T6798 |
35907-35912 |
VBG |
denotes |
using |
T6799 |
35913-35920 |
JJ |
denotes |
primary |
T6800 |
35937-35948 |
NNS |
denotes |
fibroblasts |
T6801 |
35921-35926 |
NN |
denotes |
mouse |
T6802 |
35927-35936 |
JJ |
denotes |
embryonic |
T6803 |
35949-35951 |
IN |
denotes |
at |
T6804 |
35952-35960 |
NNS |
denotes |
passages |
T6805 |
35961-35962 |
CD |
denotes |
2 |
T6806 |
35962-35963 |
SYM |
denotes |
– |
T6807 |
35963-35964 |
CD |
denotes |
5 |
T6808 |
35964-35965 |
. |
denotes |
. |
T84 |
0-6 |
NN |
denotes |
Rescue |
T85 |
0-74 |
sentence |
denotes |
Rescue of Progeria in Trichothiodystrophy by Homozygous Lethal Xpd Alleles |
T2760 |
14710-14715 |
NN |
denotes |
†XPCS |
T2761 |
14709-14710 |
HYPH |
denotes |
/ |
T2762 |
14721-14722 |
-LRB- |
denotes |
( |
T2763 |
14729-14731 |
NN |
denotes |
3A |
T2764 |
14722-14728 |
NN |
denotes |
Figure |
T2765 |
14732-14735 |
CC |
denotes |
and |
T2766 |
14736-14738 |
NN |
denotes |
3D |
T2767 |
14738-14739 |
-RRB- |
denotes |
) |
T2768 |
14739-14740 |
. |
denotes |
. |
T2769 |
14740-14841 |
sentence |
denotes |
Finally, the life span of compound heterozygotes was extended relative to XpdTTD/TTD mice (Table 2). |
T2770 |
14741-14748 |
RB |
denotes |
Finally |
T2771 |
14794-14802 |
VBN |
denotes |
extended |
T2772 |
14748-14750 |
, |
denotes |
, |
T2773 |
14750-14753 |
DT |
denotes |
the |
T2774 |
14759-14763 |
NN |
denotes |
span |
T2775 |
14754-14758 |
NN |
denotes |
life |
T2776 |
14764-14766 |
IN |
denotes |
of |
T2777 |
14767-14775 |
JJ |
denotes |
compound |
T2778 |
14776-14789 |
NNS |
denotes |
heterozygotes |
T2779 |
14790-14793 |
VBD |
denotes |
was |
T2780 |
14803-14811 |
JJ |
denotes |
relative |
T2781 |
14812-14814 |
IN |
denotes |
to |
T2782 |
14815-14821 |
NN |
denotes |
XpdTTD |
T2783 |
14822-14825 |
NN |
denotes |
TTD |
T2784 |
14821-14822 |
HYPH |
denotes |
/ |
T2785 |
14826-14830 |
NNS |
denotes |
mice |
T2786 |
14831-14832 |
-LRB- |
denotes |
( |
T2787 |
14832-14837 |
NN |
denotes |
Table |
T2788 |
14838-14839 |
CD |
denotes |
2 |
T2789 |
14839-14840 |
-RRB- |
denotes |
) |
T2790 |
14840-14841 |
. |
denotes |
. |
T2791 |
14841-16451 |
sentence |
denotes |
Figure 3 Rescue of TTD-Associated Segmental Progeroid Features in Compound Heterozygous Xpd TTD/†XPCS Mice
(A) Photographs of 20-mo-old wt, compound heterozygous XpdTTD/†XPCS, and homozygous XpdTTD/TTD mice. Note the extreme cachexia (lack of subcutaneous fat) in the XpdTTD/TTD mouse and the absence of this phenotype in wt and XpdTTD/†XPCS mice.
(B) Radiographs of 20-mo-old male wt, XpdTTD/†XPCS, and XpdTTD/TTD mice. Ageing XpdTTD/TTD mice develop kyphosis (curvature of the spinal column) and reduction of bone mineral density as shown in the 6–8 segment of the tail vertebrae counted from the pelvis (see close-up at right). Note the absence of these features in the XpdTTD / † XPCS mouse.
(C) Quantification of relative bone mineral density of tail vertebrae from 20-mo-old male wt (n = 3), XpdTTD/†XPCS (n = 4), and XpdTTD/TTD (n = 3) mice. The p-values indicate the significance of the difference relative to XpdTTD/TTD. Error bars indicate SEM.
(D) Body weight curves as a function of time. Note that the age-dependent cachexia observed in XpdTTD/TTD mice was rescued in both male and female XpdTTD / †XPCS mice. Significant differences between wt and XpdTTD/TTD but not between wt and XpdTTD/†XPCS mice were observed at 9 and 18 mo of age as indicated by asterisks. Error bars indicate SEM.
Table 2 Pleiotropic Xpd Biallelic Effects in Mice and Cells To determine whether the homozygous lethal Xpd†XPCS allele was unique in its ability to ameliorate symptoms associated with the XpdTTD allele, we generated compound heterozygous XpdTTD/†XP mice by crossing the corresponding heterozygous animals. |
T2792 |
16206-16208 |
TO |
denotes |
To |
T2793 |
16209-16218 |
VB |
denotes |
determine |
T2794 |
16352-16361 |
VBD |
denotes |
generated |
T2795 |
16219-16226 |
IN |
denotes |
whether |
T2796 |
16265-16268 |
VBD |
denotes |
was |
T2797 |
16227-16230 |
DT |
denotes |
the |
T2798 |
16258-16264 |
NN |
denotes |
allele |
T2799 |
16231-16241 |
JJ |
denotes |
homozygous |
T2800 |
16242-16248 |
JJ |
denotes |
lethal |
T2801 |
16249-16257 |
NN |
denotes |
Xpd†XPCS |
T2802 |
16269-16275 |
JJ |
denotes |
unique |
T2803 |
16276-16278 |
IN |
denotes |
in |
T2804 |
16279-16282 |
PRP$ |
denotes |
its |
T2805 |
16283-16290 |
NN |
denotes |
ability |
T2806 |
16291-16293 |
TO |
denotes |
to |
T2807 |
16294-16304 |
VB |
denotes |
ameliorate |
T2808 |
16305-16313 |
NNS |
denotes |
symptoms |
T2809 |
16314-16324 |
VBN |
denotes |
associated |
T2810 |
16325-16329 |
IN |
denotes |
with |
T2811 |
16330-16333 |
DT |
denotes |
the |
T2812 |
16341-16347 |
NN |
denotes |
allele |
T2813 |
16334-16340 |
NN |
denotes |
XpdTTD |
T2814 |
16347-16349 |
, |
denotes |
, |
T2815 |
16349-16351 |
PRP |
denotes |
we |
T2816 |
16362-16370 |
NN |
denotes |
compound |
T2817 |
16395-16399 |
NNS |
denotes |
mice |
T2818 |
16371-16383 |
JJ |
denotes |
heterozygous |
T2819 |
16384-16390 |
NN |
denotes |
XpdTTD |
T2820 |
16391-16394 |
NN |
denotes |
†XP |
T2821 |
16390-16391 |
HYPH |
denotes |
/ |
T2290 |
11706-11710 |
IN |
denotes |
than |
T2291 |
11711-11713 |
IN |
denotes |
in |
T2292 |
11714-11720 |
NN |
denotes |
XpdTTD |
T2293 |
11721-11724 |
NN |
denotes |
TTD |
T2294 |
11720-11721 |
HYPH |
denotes |
/ |
T2295 |
11725-11732 |
NNS |
denotes |
animals |
T2296 |
11732-11734 |
, |
denotes |
, |
T2297 |
11734-11737 |
CC |
denotes |
but |
T2298 |
11738-11746 |
VBD |
denotes |
remained |
T2299 |
11747-11752 |
IN |
denotes |
below |
T2300 |
11753-11756 |
DT |
denotes |
the |
T2301 |
11760-11765 |
NN |
denotes |
level |
T2302 |
11757-11759 |
NN |
denotes |
wt |
T2303 |
11766-11767 |
-LRB- |
denotes |
( |
T2304 |
11774-11776 |
NN |
denotes |
2C |
T2305 |
11767-11773 |
NN |
denotes |
Figure |
T2306 |
11776-11777 |
-RRB- |
denotes |
) |
T2307 |
11777-11778 |
. |
denotes |
. |
T2308 |
11778-11926 |
sentence |
denotes |
TTD hemizygotes (XpdTTD/KO) do not display significant differences in cutaneous features and longevity relative to homozygous XpdTTD/TTD mice [21]. |
T2309 |
11779-11782 |
NN |
denotes |
TTD |
T2310 |
11783-11794 |
NNS |
denotes |
hemizygotes |
T2311 |
11814-11821 |
VB |
denotes |
display |
T2312 |
11795-11796 |
-LRB- |
denotes |
( |
T2313 |
11803-11805 |
NN |
denotes |
KO |
T2314 |
11796-11802 |
NN |
denotes |
XpdTTD |
T2315 |
11802-11803 |
HYPH |
denotes |
/ |
T2316 |
11805-11806 |
-RRB- |
denotes |
) |
T2317 |
11807-11809 |
VBP |
denotes |
do |
T2318 |
11810-11813 |
RB |
denotes |
not |
T2319 |
11822-11833 |
JJ |
denotes |
significant |
T2320 |
11834-11845 |
NNS |
denotes |
differences |
T2321 |
11846-11848 |
IN |
denotes |
in |
T2322 |
11849-11858 |
JJ |
denotes |
cutaneous |
T2323 |
11859-11867 |
NNS |
denotes |
features |
T2324 |
11868-11871 |
CC |
denotes |
and |
T2325 |
11872-11881 |
NN |
denotes |
longevity |
T2326 |
11882-11890 |
JJ |
denotes |
relative |
T2327 |
11891-11893 |
IN |
denotes |
to |
T2328 |
11894-11904 |
JJ |
denotes |
homozygous |
T2329 |
11916-11920 |
NNS |
denotes |
mice |
T2330 |
11905-11911 |
NN |
denotes |
XpdTTD |
T2331 |
11912-11915 |
NN |
denotes |
TTD |
T2332 |
11911-11912 |
HYPH |
denotes |
/ |
T2333 |
11921-11922 |
-LRB- |
denotes |
[ |
T2334 |
11922-11924 |
CD |
denotes |
21 |
T2335 |
11924-11925 |
-RRB- |
denotes |
] |
T2336 |
11925-11926 |
. |
denotes |
. |
T2337 |
11926-13586 |
sentence |
denotes |
Figure 2 Partial Rescue of TTD Cutaneous, Blood, and Developmental Phenotypes in Compound Heterozygous XpdTTD/†XPCS Mice
(A) Photographs of 5-mo-old homozygous XpdTTD/TTD, compound heterozygous XpdTTD/†XPCS, and wt mice. Insets: images of first-round hair loss.
(B) Histological analysis of the skin of XpdTTD/TTD, XpdTTD/†XPCS, and wt mice. TTD-associated acanthosis (thicker epidermis, indicated by solid vertical line), pronounced granular layer (indicated by arrows), and sebacious gland hyperplasia (indicated by dotted vertical line) were absent in the epidermis of XpdTTD/†XPCS and wt mice. Magnification 400×.
(C) Cysteine content of hair from wt, XpdTTD/TTD, and XpdTTD/†XPCS mice. The p-value indicates significant differences between mutants and wt, as well as between XpdTTD/TTD and XpdTTD/†XPCS mice. Error bars indicate standard error of the mean (SEM).
(D) Hematocrit values from blood of XpdTTD/TTD and XpdTTD/†XPCS mice. The p-values indicate the significance of the difference relative to wt. Error bars indicate SEM.
(E) Body weights of developing XpdTTD/TTD and XpdTTD/†XPCS mice after weaning plotted as a percentage of the weight of age-matched control wt and heterozygote (hz) littermates (set at 100%). Error bars indicate SEM. Other prominent TTD features in the epidermis, including acanthosis (thickening of the layer of the nucleated cells), hyperkeratosis (prominent thickening of the cornified layer), and pronounced granular layer and sebacious gland hyperplasia (causing greasy appearance of the hair), were absent in the skin of XpdTTD/†XPCS mice, as established by blind microscopic examination of skin sections (Figure 2B). |
T2338 |
13180-13185 |
JJ |
denotes |
Other |
T2339 |
13200-13208 |
NNS |
denotes |
features |
T2340 |
13186-13195 |
JJ |
denotes |
prominent |
T2341 |
13196-13199 |
NN |
denotes |
TTD |
T2342 |
13463-13467 |
VBD |
denotes |
were |
T2343 |
13209-13211 |
IN |
denotes |
in |
T2344 |
13212-13215 |
DT |
denotes |
the |
T2345 |
13216-13225 |
NN |
denotes |
epidermis |
T2346 |
13225-13227 |
, |
denotes |
, |
T2347 |
13227-13236 |
VBG |
denotes |
including |
T2348 |
13237-13247 |
NN |
denotes |
acanthosis |
T2349 |
13248-13249 |
-LRB- |
denotes |
( |
T2350 |
13249-13259 |
VBG |
denotes |
thickening |
T2351 |
13260-13262 |
IN |
denotes |
of |
T3736 |
19207-19215 |
RB |
denotes |
together |
T3737 |
19215-19217 |
, |
denotes |
, |
T3738 |
19217-19222 |
DT |
denotes |
these |
T3739 |
19223-19227 |
NNS |
denotes |
data |
T3740 |
19232-19242 |
JJ |
denotes |
consistent |
T3741 |
19243-19247 |
IN |
denotes |
with |
T3742 |
19248-19260 |
JJ |
denotes |
interallelic |
T3743 |
19261-19276 |
NN |
denotes |
complementation |
T3744 |
19277-19279 |
IN |
denotes |
of |
T3745 |
19280-19282 |
NN |
denotes |
UV |
T3746 |
19283-19294 |
NN |
denotes |
sensitivity |
T3747 |
19295-19297 |
IN |
denotes |
in |
T3748 |
19298-19303 |
NNS |
denotes |
cells |
T3749 |
19304-19307 |
CC |
denotes |
but |
T3750 |
19308-19318 |
VBP |
denotes |
underscore |
T3751 |
19319-19322 |
DT |
denotes |
the |
T3752 |
19323-19327 |
NN |
denotes |
lack |
T3753 |
19328-19330 |
IN |
denotes |
of |
T3754 |
19331-19334 |
DT |
denotes |
any |
T3755 |
19335-19346 |
NN |
denotes |
correlation |
T3756 |
19347-19354 |
IN |
denotes |
between |
T3757 |
19355-19357 |
NN |
denotes |
UV |
T3758 |
19358-19365 |
VBN |
denotes |
related |
T3759 |
19357-19358 |
HYPH |
denotes |
- |
T3760 |
19373-19388 |
NNS |
denotes |
characteristics |
T3761 |
19366-19372 |
NN |
denotes |
repair |
T3762 |
19389-19392 |
CC |
denotes |
and |
T3763 |
19393-19396 |
NN |
denotes |
TTD |
T3764 |
19407-19417 |
NNS |
denotes |
phenotypes |
T3765 |
19397-19406 |
NN |
denotes |
progeroid |
T3766 |
19418-19420 |
IN |
denotes |
in |
T3767 |
19421-19427 |
NN |
denotes |
animal |
T3768 |
19428-19434 |
NNS |
denotes |
models |
T3769 |
19434-19435 |
. |
denotes |
. |
T3770 |
19435-19436 |
sentence |
denotes |
|
T3771 |
22251-22260 |
sentence |
denotes |
Next we a |
T3772 |
22251-22253 |
NN |
denotes |
Ne |
T3773 |
22253-22255 |
NNS |
denotes |
xt |
T3774 |
22255-22256 |
: |
denotes |
|
T3775 |
22256-22258 |
VBD |
denotes |
we |
T3776 |
22259-22260 |
DT |
denotes |
a |
T3777 |
22260-22270 |
sentence |
denotes |
sked wheth |
T3778 |
22260-22262 |
NN |
denotes |
sk |
T3779 |
22262-22263 |
VBZ |
denotes |
e |
T3780 |
22268-22269 |
VBP |
denotes |
t |
T3781 |
22263-22264 |
NN |
denotes |
d |
T3782 |
22265-22267 |
IN |
denotes |
wh |
T3783 |
22267-22268 |
NNS |
denotes |
e |
T3784 |
22269-22270 |
IN |
denotes |
h |
T3785 |
22270-22274 |
sentence |
denotes |
er t |
T3786 |
22270-22272 |
NN |
denotes |
er |
T3787 |
22273-22274 |
NN |
denotes |
t |
T3788 |
22274-22276 |
sentence |
denotes |
he |
T3789 |
22274-22275 |
DT |
denotes |
h |
T3790 |
22275-22276 |
NN |
denotes |
e |
T3791 |
22276-22277 |
sentence |
denotes |
|
T3792 |
22277-22280 |
sentence |
denotes |
Xpd |
T3793 |
22277-22278 |
NN |
denotes |
X |
T3794 |
22278-22279 |
NN |
denotes |
p |
T3795 |
22279-22280 |
NN |
denotes |
d |
T3796 |
22280-22299 |
sentence |
denotes |
†XPCS and Xpd†XP al |
T3797 |
22280-22285 |
NN |
denotes |
†XPCS |
T3798 |
22286-22289 |
CC |
denotes |
and |
T3799 |
22290-22293 |
NN |
denotes |
Xpd |
T3800 |
22293-22296 |
NN |
denotes |
†XP |
T3801 |
22297-22298 |
JJ |
denotes |
a |
T3802 |
22298-22299 |
NN |
denotes |
l |
T3803 |
22299-22317 |
sentence |
denotes |
leles, despite dec |
T3804 |
22299-22300 |
NNS |
denotes |
l |
T3805 |
22300-22301 |
VBP |
denotes |
e |
T3806 |
22301-22304 |
NNS |
denotes |
les |
T3807 |
22304-22306 |
, |
denotes |
, |
T3808 |
22306-22307 |
NN |
denotes |
d |
T3809 |
22307-22309 |
NNS |
denotes |
es |
T3810 |
22309-22310 |
NN |
denotes |
p |
T3811 |
22310-22312 |
IN |
denotes |
it |
T3812 |
22312-22313 |
NNS |
denotes |
e |
T3813 |
22314-22315 |
VBN |
denotes |
d |
T3814 |
22315-22316 |
NNS |
denotes |
e |
T3815 |
22316-22317 |
NNS |
denotes |
c |
T3816 |
22317-22325 |
sentence |
denotes |
reased m |
T3817 |
22317-22319 |
JJ |
denotes |
re |
T3818 |
22319-22320 |
NN |
denotes |
a |
T3819 |
22320-22321 |
RBS |
denotes |
s |
T3820 |
22321-22322 |
NNS |
denotes |
e |
T3821 |
22322-22323 |
CC |
denotes |
d |
T3822 |
22324-22325 |
NNS |
denotes |
m |
T3823 |
22325-22458 |
sentence |
denotes |
RNA levels, ameliorated TTD symptoms by increasing overall TFIIH levels in compound heterozygous XpdTTD/ †XPCS and XpdTTD/ †XP cells. |
T3824 |
22337-22348 |
VBN |
denotes |
ameliorated |
T3825 |
22329-22335 |
NNS |
denotes |
levels |
T3826 |
22325-22328 |
NN |
denotes |
RNA |
T3827 |
22335-22337 |
, |
denotes |
, |
T3828 |
22349-22352 |
NN |
denotes |
TTD |
T3829 |
22353-22361 |
NNS |
denotes |
symptoms |
T3830 |
22362-22364 |
IN |
denotes |
by |
T3831 |
22365-22375 |
VBG |
denotes |
increasing |
T3832 |
22390-22396 |
NNS |
denotes |
levels |
T3833 |
22376-22383 |
JJ |
denotes |
overall |
T3834 |
22384-22389 |
NN |
denotes |
TFIIH |
T3835 |
22397-22399 |
IN |
denotes |
in |
T3836 |
22400-22408 |
NN |
denotes |
compound |
T3837 |
22452-22457 |
NNS |
denotes |
cells |
T3838 |
22409-22421 |
JJ |
denotes |
heterozygous |
T3839 |
22422-22428 |
NN |
denotes |
XpdTTD |
T3840 |
22429-22435 |
NN |
denotes |
†XPCS |
T3841 |
22428-22429 |
HYPH |
denotes |
/ |
T3842 |
22436-22439 |
CC |
denotes |
and |
T3843 |
22440-22446 |
NN |
denotes |
XpdTTD |
T3844 |
22447-22451 |
NN |
denotes |
†XP |
T3845 |
22446-22447 |
HYPH |
denotes |
/ |
T3846 |
22457-22458 |
. |
denotes |
. |
T3847 |
22458-22680 |
sentence |
denotes |
Previously, using comparative immunohistochemistry, we and others have shown an up to 70% reduction of TFIIH levels in primary fibroblasts from patients with TTD compared with wt controls due to reduced stability [16,17]. |
T3848 |
22459-22469 |
RB |
denotes |
Previously |
T3849 |
22530-22535 |
VBN |
denotes |
shown |
T3850 |
22469-22471 |
, |
denotes |
, |
T3851 |
22471-22476 |
VBG |
denotes |
using |
T3852 |
22477-22488 |
JJ |
denotes |
comparative |
T3853 |
22489-22509 |
NN |
denotes |
immunohistochemistry |
T3854 |
22509-22511 |
, |
denotes |
, |
T3855 |
22511-22513 |
PRP |
denotes |
we |
T3856 |
22514-22517 |
CC |
denotes |
and |
T3857 |
22518-22524 |
NNS |
denotes |
others |
T3858 |
22525-22529 |
VBP |
denotes |
have |
T3859 |
22536-22538 |
DT |
denotes |
an |
T3860 |
22549-22558 |
NN |
denotes |
reduction |
T3861 |
22539-22541 |
IN |
denotes |
up |
T3862 |
22545-22547 |
CD |
denotes |
70 |
T3863 |
22542-22544 |
IN |
denotes |
to |
T3864 |
22547-22548 |
NN |
denotes |
% |
T3865 |
22559-22561 |
IN |
denotes |
of |
T3866 |
22562-22567 |
NN |
denotes |
TFIIH |
T3867 |
22568-22574 |
NNS |
denotes |
levels |
T3868 |
22575-22577 |
IN |
denotes |
in |
T3869 |
22578-22585 |
JJ |
denotes |
primary |
T3870 |
22586-22597 |
NNS |
denotes |
fibroblasts |
T3871 |
22598-22602 |
IN |
denotes |
from |
T4084 |
23676-23682 |
JJ |
denotes |
normal |
T4085 |
23682-23683 |
. |
denotes |
. |
R7 |
T92 |
T90 |
pobj |
Alleles,by |
R8 |
T93 |
T92 |
amod |
Lethal,Alleles |
R9 |
T94 |
T92 |
compound |
Xpd,Alleles |
R11 |
T97 |
T114 |
advcl |
is,documented |
R12 |
T98 |
T99 |
compound |
compound,heterozygosity |
R13 |
T99 |
T97 |
nsubj |
heterozygosity,is |
R14 |
T100 |
T99 |
punct |
", ",heterozygosity |
R15 |
T101 |
T99 |
cc |
or,heterozygosity |
R16 |
T102 |
T103 |
det |
the,presence |
R17 |
T103 |
T99 |
conj |
presence,heterozygosity |
R18 |
T104 |
T103 |
prep |
of,presence |
R19 |
T105 |
T106 |
nummod |
two,alleles |
R20 |
T106 |
T104 |
pobj |
alleles,of |
R21 |
T107 |
T106 |
amod |
different,alleles |
R22 |
T108 |
T106 |
amod |
mutant,alleles |
R23 |
T109 |
T106 |
prep |
of,alleles |
R24 |
T110 |
T111 |
det |
the,gene |
R26 |
T112 |
T111 |
amod |
same,gene |
R27 |
T113 |
T97 |
punct |
", ",is |
R31 |
T118 |
T116 |
pobj |
disease,in |
R32 |
T119 |
T118 |
amod |
recessive,disease |
R51 |
T140 |
T137 |
pobj |
difficulty,because |
R52 |
T141 |
T140 |
amod |
inherent,difficulty |
R56 |
T145 |
T143 |
dobj |
effects,distinguishing |
R57 |
T146 |
T145 |
amod |
biallelic,effects |
R71 |
T162 |
T160 |
pobj |
alleles,of |
R72 |
T163 |
T162 |
amod |
recessive,alleles |
R77 |
T168 |
T166 |
pobj |
pleiotropy,to |
R78 |
T169 |
T168 |
amod |
enigmatic,pleiotropy |
R82 |
T173 |
T171 |
pobj |
disorders,with |
R83 |
T174 |
T173 |
amod |
recessive,disorders |
R86 |
T177 |
T175 |
pobj |
models,in |
R87 |
T178 |
T177 |
amod |
heterozygous,models |
R88 |
T179 |
T177 |
compound |
mouse,models |
R93 |
T186 |
T184 |
pobj |
helicase,in |
R94 |
T187 |
T186 |
amod |
essential,helicase |
R100 |
T193 |
T191 |
pobj |
repair,in |
R101 |
T194 |
T193 |
compound |
DNA,repair |
R112 |
T205 |
T203 |
pobj |
sensitivity,from |
R113 |
T206 |
T205 |
compound |
UV,sensitivity |
R119 |
T212 |
T210 |
pobj |
progeria,to |
R120 |
T213 |
T212 |
amod |
segmental,progeria |
R136 |
T231 |
T229 |
pobj |
alleles,of |
R137 |
T232 |
T231 |
compound |
Xpd,alleles |
R145 |
T240 |
T236 |
appos |
ability,following |
R146 |
T241 |
T239 |
punct |
),i |
R147 |
T242 |
T240 |
det |
the,ability |
R150 |
T245 |
T243 |
pobj |
alleles,of |
R151 |
T246 |
T245 |
amod |
lethal,alleles |
R152 |
T247 |
T245 |
compound |
Xpd,alleles |
R161 |
T256 |
T249 |
advcl |
supplied,ameliorate |
R162 |
T257 |
T258 |
poss |
their,function |
R163 |
T258 |
T256 |
nsubjpass |
function,supplied |
R164 |
T259 |
T258 |
amod |
essential,function |
R165 |
T260 |
T258 |
amod |
basal,function |
R166 |
T261 |
T258 |
compound |
transcription,function |
R167 |
T262 |
T256 |
auxpass |
is,supplied |
R170 |
T265 |
T263 |
pobj |
allele,by |
R171 |
T266 |
T265 |
amod |
different,allele |
R172 |
T267 |
T268 |
npadvmod |
disease,causing |
R174 |
T269 |
T268 |
punct |
-,causing |
R178 |
T273 |
T240 |
conj |
functions,ability |
R179 |
T274 |
T272 |
punct |
),ii |
R180 |
T275 |
T276 |
amod |
differential,developmental |
R181 |
T276 |
T273 |
amod |
developmental,functions |
R182 |
T277 |
T276 |
cc |
and,developmental |
R183 |
T278 |
T279 |
npadvmod |
tissue,specific |
R185 |
T280 |
T279 |
punct |
-,specific |
R188 |
T283 |
T281 |
pobj |
products,of |
R189 |
T284 |
T285 |
compound |
Xpd,allele |
R190 |
T285 |
T283 |
compound |
allele,products |
R195 |
T290 |
T273 |
conj |
complementation,functions |
R196 |
T291 |
T289 |
punct |
),iii |
R197 |
T292 |
T290 |
amod |
interallelic,complementation |
R220 |
T317 |
T314 |
pobj |
alleles,of |
R221 |
T318 |
T317 |
punct |
”,alleles |
R237 |
T334 |
T332 |
dobj |
plasticity,affect |
R238 |
T335 |
T334 |
amod |
normal,plasticity |
R239 |
T336 |
T335 |
cc |
and,normal |
R240 |
T337 |
T335 |
conj |
pathological,normal |
R241 |
T338 |
T334 |
amod |
phenotypic,plasticity |
R246 |
T565 |
T566 |
amod |
Interallelic,complementation |
R247 |
T566 |
T567 |
nsubjpass |
complementation,defined |
R248 |
T568 |
T567 |
auxpass |
is,defined |
R249 |
T569 |
T567 |
prep |
as,defined |
R250 |
T570 |
T571 |
det |
the,ability |
R251 |
T571 |
T569 |
pobj |
ability,as |
R252 |
T572 |
T571 |
prep |
of,ability |
R253 |
T573 |
T574 |
nummod |
two,alleles |
R254 |
T574 |
T572 |
pobj |
alleles,of |
R255 |
T575 |
T576 |
advmod |
differentially,mutated |
R256 |
T576 |
T574 |
amod |
mutated,alleles |
R257 |
T577 |
T578 |
aux |
to,function |
R258 |
T578 |
T571 |
acl |
function,ability |
R259 |
T579 |
T578 |
advmod |
better,function |
R260 |
T580 |
T578 |
advmod |
together,function |
R261 |
T581 |
T582 |
mark |
than,can |
R263 |
T583 |
T582 |
nsubj |
either,can |
R264 |
T584 |
T582 |
prep |
on,can |
R265 |
T585 |
T586 |
poss |
its,own |
R266 |
T586 |
T584 |
pobj |
own,on |
R267 |
T587 |
T567 |
punct |
.,defined |
R268 |
T589 |
T590 |
prep |
Despite,considered |
R269 |
T591 |
T592 |
poss |
its,universality |
R271 |
T593 |
T592 |
amod |
near,universality |
R272 |
T594 |
T592 |
prep |
in,universality |
R273 |
T595 |
T596 |
amod |
lower,organisms |
R274 |
T596 |
T594 |
pobj |
organisms,in |
R275 |
T597 |
T598 |
punct |
[,1 |
R276 |
T598 |
T596 |
parataxis |
1,organisms |
R277 |
T599 |
T598 |
punct |
],1 |
R278 |
T600 |
T590 |
punct |
", ",considered |
R279 |
T601 |
T602 |
poss |
its,potential |
R280 |
T602 |
T590 |
nsubjpass |
potential,considered |
R281 |
T603 |
T604 |
aux |
to,contribute |
R282 |
T604 |
T602 |
acl |
contribute,potential |
R283 |
T605 |
T604 |
prep |
to,contribute |
R284 |
T606 |
T607 |
amod |
clinical,heterogeneity |
R285 |
T607 |
T605 |
pobj |
heterogeneity,to |
R286 |
T608 |
T607 |
prep |
in,heterogeneity |
R287 |
T609 |
T610 |
amod |
human,disease |
R288 |
T610 |
T608 |
pobj |
disease,in |
R289 |
T611 |
T590 |
auxpass |
is,considered |
R290 |
T612 |
T590 |
advmod |
seldom,considered |
R291 |
T613 |
T590 |
punct |
.,considered |
R292 |
T615 |
T616 |
nsubjpass |
Evidence,limited |
R293 |
T617 |
T615 |
prep |
of,Evidence |
R294 |
T618 |
T619 |
amod |
interallelic,complementation |
R295 |
T619 |
T617 |
pobj |
complementation,of |
R296 |
T620 |
T619 |
prep |
at,complementation |
R297 |
T621 |
T622 |
advmod |
clinically,relevant |
R298 |
T622 |
T623 |
amod |
relevant,loci |
R299 |
T623 |
T620 |
pobj |
loci,at |
R300 |
T624 |
T616 |
auxpass |
is,limited |
R301 |
T625 |
T616 |
prep |
to,limited |
R302 |
T626 |
T627 |
amod |
biochemical,studies |
R303 |
T627 |
T625 |
pobj |
studies,to |
R304 |
T628 |
T626 |
cc |
and,biochemical |
R305 |
T629 |
T630 |
npadvmod |
cell,based |
R306 |
T630 |
T626 |
conj |
based,biochemical |
R307 |
T631 |
T630 |
punct |
-,based |
R308 |
T632 |
T627 |
prep |
of,studies |
R309 |
T633 |
T634 |
det |
a,handful |
R310 |
T634 |
T632 |
pobj |
handful,of |
R311 |
T635 |
T634 |
prep |
of,handful |
R312 |
T636 |
T637 |
amod |
metabolic,disorders |
R313 |
T637 |
T635 |
pobj |
disorders,of |
R314 |
T638 |
T637 |
prep |
with,disorders |
R315 |
T639 |
T638 |
pobj |
defects,with |
R316 |
T640 |
T639 |
prep |
in,defects |
R317 |
T641 |
T640 |
pobj |
enzymes,in |
R318 |
T642 |
T641 |
prep |
including,enzymes |
R319 |
T643 |
T644 |
compound |
propinyl,CoA |
R321 |
T645 |
T644 |
punct |
-,CoA |
R322 |
T646 |
T642 |
pobj |
carboxylase,including |
R323 |
T647 |
T648 |
punct |
[,2 |
R324 |
T648 |
T646 |
parataxis |
2,carboxylase |
R325 |
T649 |
T648 |
punct |
],2 |
R326 |
T650 |
T646 |
punct |
", ",carboxylase |
R327 |
T651 |
T652 |
compound |
argininosuccinate,lyase |
R328 |
T652 |
T646 |
conj |
lyase,carboxylase |
R329 |
T653 |
T654 |
punct |
[,3 |
R330 |
T654 |
T652 |
parataxis |
3,lyase |
R331 |
T655 |
T654 |
punct |
],3 |
R332 |
T656 |
T652 |
punct |
", ",lyase |
R333 |
T657 |
T658 |
nmod |
galactose,phosphate |
R334 |
T658 |
T662 |
compound |
phosphate,uridylyltransferase |
R335 |
T659 |
T658 |
punct |
-,phosphate |
R336 |
T660 |
T658 |
nummod |
1,phosphate |
R337 |
T661 |
T658 |
punct |
-,phosphate |
R338 |
T662 |
T652 |
conj |
uridylyltransferase,lyase |
R339 |
T663 |
T664 |
punct |
[,4 |
R340 |
T664 |
T662 |
parataxis |
4,uridylyltransferase |
R341 |
T665 |
T664 |
punct |
],4 |
R342 |
T666 |
T662 |
punct |
", ",uridylyltransferase |
R343 |
T667 |
T662 |
cc |
and,uridylyltransferase |
R344 |
T668 |
T669 |
compound |
methylmalonyl,mutase |
R346 |
T670 |
T669 |
compound |
CoA,mutase |
R347 |
T671 |
T672 |
punct |
[,5 |
R348 |
T672 |
T669 |
parataxis |
5,mutase |
R349 |
T673 |
T672 |
punct |
],5 |
R350 |
T674 |
T616 |
punct |
.,limited |
R351 |
T676 |
T677 |
amod |
Compound,heterozygotes |
R352 |
T677 |
T678 |
nsubj |
heterozygotes,are |
R353 |
T679 |
T678 |
attr |
individuals,are |
R354 |
T680 |
T679 |
acl |
carrying,individuals |
R355 |
T681 |
T682 |
nummod |
two,alleles |
R356 |
T682 |
T680 |
dobj |
alleles,carrying |
R357 |
T683 |
T682 |
amod |
different,alleles |
R358 |
T684 |
T682 |
amod |
mutant,alleles |
R359 |
T685 |
T682 |
prep |
of,alleles |
R360 |
T686 |
T687 |
det |
the,gene |
R362 |
T688 |
T687 |
amod |
same,gene |
R363 |
T689 |
T678 |
punct |
.,are |
R364 |
T691 |
T692 |
prep |
In,result |
R365 |
T693 |
T694 |
det |
the,absence |
R366 |
T694 |
T691 |
pobj |
absence,In |
R367 |
T695 |
T694 |
prep |
of,absence |
R368 |
T696 |
T697 |
det |
a,allele |
R369 |
T697 |
T695 |
pobj |
allele,of |
R370 |
T698 |
T697 |
amod |
dominant,allele |
R371 |
T699 |
T697 |
punct |
(,allele |
R372 |
T700 |
T701 |
amod |
wild,type |
R373 |
T701 |
T697 |
nmod |
type,allele |
R374 |
T702 |
T701 |
punct |
-,type |
R375 |
T703 |
T701 |
punct |
[,type |
R376 |
T704 |
T701 |
appos |
wt,type |
R377 |
T705 |
T697 |
punct |
],allele |
R378 |
T706 |
T697 |
punct |
),allele |
R379 |
T707 |
T692 |
punct |
", ",result |
R380 |
T708 |
T709 |
amod |
genetic,interactions |
R381 |
T709 |
T692 |
nsubj |
interactions,result |
R382 |
T710 |
T709 |
prep |
between,interactions |
R383 |
T711 |
T712 |
amod |
recessive,alleles |
R384 |
T712 |
T710 |
pobj |
alleles,between |
R385 |
T713 |
T709 |
punct |
(,interactions |
R386 |
T714 |
T709 |
acl |
referred,interactions |
R387 |
T715 |
T714 |
prep |
to,referred |
R388 |
T716 |
T714 |
advmod |
here,referred |
R389 |
T717 |
T714 |
prep |
as,referred |
R390 |
T718 |
T717 |
punct |
“,as |
R391 |
T719 |
T720 |
amod |
biallelic,effects |
R393 |
T721 |
T720 |
punct |
”,effects |
R394 |
T722 |
T692 |
punct |
),result |
R395 |
T723 |
T692 |
aux |
could,result |
R396 |
T724 |
T692 |
prep |
in,result |
R397 |
T725 |
T726 |
amod |
different,outcomes |
R399 |
T727 |
T726 |
amod |
phenotypic,outcomes |
R400 |
T728 |
T726 |
prep |
including,outcomes |
R401 |
T729 |
T730 |
amod |
interallelic,complementation |
R402 |
T730 |
T728 |
pobj |
complementation,including |
R403 |
T731 |
T692 |
punct |
.,result |
R404 |
T733 |
T734 |
mark |
Although,create |
R405 |
T734 |
T743 |
advcl |
create,caused |
R406 |
T735 |
T734 |
nsubj |
amelioration,create |
R407 |
T736 |
T735 |
prep |
of,amelioration |
R408 |
T737 |
T738 |
compound |
disease,symptoms |
R409 |
T738 |
T736 |
pobj |
symptoms,of |
R410 |
T739 |
T735 |
prep |
by,amelioration |
R411 |
T740 |
T741 |
amod |
interallelic,complementation |
R412 |
T741 |
T739 |
pobj |
complementation,by |
R413 |
T742 |
T734 |
aux |
would,create |
R414 |
T744 |
T745 |
det |
an,bias |
R416 |
T746 |
T745 |
compound |
ascertainment,bias |
R417 |
T747 |
T734 |
prep |
in,create |
R418 |
T748 |
T749 |
det |
the,clinic |
R419 |
T749 |
T747 |
pobj |
clinic,in |
R420 |
T750 |
T743 |
punct |
", ",caused |
R421 |
T751 |
T752 |
det |
the,lack |
R422 |
T752 |
T743 |
nsubjpass |
lack,caused |
R423 |
T753 |
T752 |
prep |
of,lack |
R424 |
T754 |
T753 |
pobj |
evidence,of |
R425 |
T755 |
T754 |
prep |
concerning,evidence |
R426 |
T756 |
T757 |
amod |
interallelic,complementation |
R427 |
T757 |
T755 |
pobj |
complementation,concerning |
R428 |
T758 |
T757 |
cc |
or,complementation |
R429 |
T759 |
T760 |
amod |
other,effects |
R431 |
T761 |
T760 |
amod |
biallelic,effects |
R432 |
T762 |
T757 |
prep |
in,complementation |
R433 |
T763 |
T764 |
amod |
human,disease |
R434 |
T764 |
T762 |
pobj |
disease,in |
R435 |
T765 |
T743 |
auxpass |
is,caused |
R436 |
T766 |
T743 |
advmod |
likely,caused |
R437 |
T767 |
T743 |
agent |
by,caused |
R438 |
T768 |
T769 |
det |
the,difficulty |
R439 |
T769 |
T767 |
pobj |
difficulty,by |
R440 |
T770 |
T769 |
prep |
in,difficulty |
R441 |
T771 |
T770 |
pcomp |
distinguishing,in |
R442 |
T772 |
T773 |
amod |
such,effects |
R443 |
T773 |
T771 |
dobj |
effects,distinguishing |
R444 |
T774 |
T771 |
prep |
from,distinguishing |
R445 |
T775 |
T774 |
pobj |
environment,from |
R446 |
T776 |
T775 |
cc |
and,environment |
R447 |
T777 |
T778 |
amod |
genetic,background |
R448 |
T778 |
T775 |
conj |
background,environment |
R449 |
T779 |
T743 |
punct |
.,caused |
R450 |
T781 |
T782 |
nsubj |
XPD,encodes |
R451 |
T783 |
T782 |
dobj |
one,encodes |
R452 |
T784 |
T783 |
prep |
of,one |
R453 |
T785 |
T786 |
det |
the,components |
R454 |
T786 |
T784 |
pobj |
components,of |
R455 |
T787 |
T786 |
nummod |
two,components |
R456 |
T788 |
T786 |
compound |
helicase,components |
R457 |
T789 |
T786 |
prep |
of,components |
R458 |
T790 |
T791 |
amod |
basal,IIH |
R459 |
T791 |
T789 |
pobj |
IIH,of |
R460 |
T792 |
T791 |
nmod |
transcription,IIH |
R461 |
T793 |
T792 |
punct |
/,transcription |
R462 |
T794 |
T795 |
compound |
DNA,repair |
R463 |
T795 |
T792 |
appos |
repair,transcription |
R464 |
T796 |
T791 |
compound |
factor,IIH |
R465 |
T797 |
T791 |
punct |
(,IIH |
R466 |
T798 |
T791 |
appos |
TFIIH,IIH |
R467 |
T799 |
T783 |
punct |
),one |
R468 |
T800 |
T783 |
punct |
", ",one |
R469 |
T801 |
T802 |
det |
a,complex |
R470 |
T802 |
T783 |
appos |
complex,one |
R471 |
T803 |
T804 |
nummod |
ten,subunit |
R472 |
T804 |
T802 |
nmod |
subunit,complex |
R473 |
T805 |
T804 |
punct |
-,subunit |
R474 |
T806 |
T802 |
punct |
", ",complex |
R475 |
T807 |
T802 |
amod |
multifunctional,complex |
R476 |
T808 |
T809 |
dep |
that,is |
R477 |
T809 |
T802 |
relcl |
is,complex |
R478 |
T810 |
T809 |
acomp |
essential,is |
R479 |
T811 |
T810 |
prep |
for,essential |
R480 |
T812 |
T813 |
amod |
multiple,processes |
R481 |
T813 |
T811 |
pobj |
processes,for |
R482 |
T814 |
T813 |
punct |
", ",processes |
R483 |
T815 |
T813 |
prep |
including,processes |
R484 |
T816 |
T817 |
amod |
basal,initiation |
R486 |
T818 |
T817 |
compound |
transcription,initiation |
R487 |
T819 |
T817 |
cc |
and,initiation |
R488 |
T820 |
T821 |
compound |
DNA,repair |
R490 |
T822 |
T821 |
compound |
damage,repair |
R491 |
T823 |
T821 |
prep |
via,repair |
R492 |
T824 |
T825 |
det |
the,pathway |
R493 |
T825 |
T823 |
pobj |
pathway,via |
R494 |
T826 |
T827 |
nmod |
nucleotide,repair |
R495 |
T827 |
T825 |
nmod |
repair,pathway |
R496 |
T828 |
T827 |
nmod |
excision,repair |
R497 |
T829 |
T827 |
punct |
(,repair |
R498 |
T830 |
T827 |
appos |
NER,repair |
R499 |
T831 |
T825 |
punct |
),pathway |
R500 |
T832 |
T833 |
punct |
[,7 |
R501 |
T833 |
T783 |
parataxis |
7,one |
R502 |
T834 |
T833 |
nummod |
6,7 |
R503 |
T835 |
T833 |
punct |
",",7 |
R504 |
T836 |
T833 |
punct |
],7 |
R505 |
T837 |
T782 |
punct |
.,encodes |
R506 |
T839 |
T840 |
nsubjpass |
Alterations,associated |
R507 |
T841 |
T839 |
prep |
in,Alterations |
R508 |
T842 |
T841 |
pobj |
XPD,in |
R509 |
T843 |
T839 |
acl |
resulting,Alterations |
R510 |
T844 |
T843 |
prep |
in,resulting |
R511 |
T845 |
T846 |
amod |
defective,function |
R513 |
T847 |
T846 |
compound |
TFIIH,function |
R514 |
T848 |
T840 |
auxpass |
are,associated |
R515 |
T849 |
T840 |
prep |
with,associated |
R516 |
T850 |
T851 |
npadvmod |
UV,sensitive |
R518 |
T852 |
T851 |
punct |
-,sensitive |
R519 |
T853 |
T849 |
pobj |
disorders,with |
R520 |
T854 |
T853 |
punct |
", ",disorders |
R521 |
T855 |
T853 |
amod |
multisystem,disorders |
R522 |
T856 |
T853 |
prep |
including,disorders |
R523 |
T857 |
T858 |
compound |
xeroderma,pigmentosum |
R524 |
T858 |
T856 |
pobj |
pigmentosum,including |
R525 |
T859 |
T858 |
punct |
(,pigmentosum |
R526 |
T860 |
T858 |
appos |
XP,pigmentosum |
R527 |
T861 |
T858 |
punct |
),pigmentosum |
R528 |
T862 |
T858 |
punct |
", ",pigmentosum |
R529 |
T863 |
T858 |
conj |
XP,pigmentosum |
R530 |
T864 |
T863 |
acl |
combined,XP |
R531 |
T865 |
T864 |
prep |
with,combined |
R532 |
T866 |
T867 |
compound |
Cockayne,syndrome |
R533 |
T867 |
T865 |
pobj |
syndrome,with |
R534 |
T868 |
T867 |
punct |
(,syndrome |
R535 |
T869 |
T867 |
appos |
CS,syndrome |
R536 |
T870 |
T863 |
punct |
),XP |
R537 |
T871 |
T863 |
punct |
", ",XP |
R538 |
T872 |
T863 |
cc |
and,XP |
R539 |
T873 |
T863 |
conj |
trichothiodystrophy,XP |
R540 |
T874 |
T873 |
punct |
(,trichothiodystrophy |
R541 |
T875 |
T873 |
appos |
TTD,trichothiodystrophy |
R542 |
T876 |
T840 |
punct |
),associated |
R543 |
T877 |
T878 |
punct |
[,8 |
R544 |
T878 |
T840 |
parataxis |
8,associated |
R545 |
T879 |
T880 |
punct |
–,10 |
R546 |
T880 |
T878 |
prep |
10,8 |
R547 |
T881 |
T878 |
punct |
],8 |
R548 |
T882 |
T840 |
punct |
.,associated |
R549 |
T884 |
T885 |
nsubjpass |
XP,marked |
R550 |
T886 |
T885 |
auxpass |
is,marked |
R551 |
T887 |
T885 |
agent |
by,marked |
R552 |
T888 |
T889 |
npadvmod |
sun,induced |
R554 |
T890 |
T889 |
punct |
-,induced |
R556 |
T892 |
T891 |
compound |
pigmentation,anomalies |
R557 |
T893 |
T891 |
cc |
and,anomalies |
R558 |
T894 |
T895 |
det |
a,elevation |
R559 |
T895 |
T891 |
conj |
elevation,anomalies |
R560 |
T896 |
T897 |
amod |
greater,"1,000" |
R561 |
T897 |
T899 |
quantmod |
"1,000",fold |
R562 |
T898 |
T897 |
quantmod |
than,"1,000" |
R563 |
T899 |
T895 |
nummod |
fold,elevation |
R564 |
T900 |
T899 |
punct |
-,fold |
R565 |
T901 |
T895 |
prep |
in,elevation |
R566 |
T902 |
T903 |
compound |
skin,cancer |
R567 |
T903 |
T904 |
compound |
cancer,risk |
R568 |
T904 |
T901 |
pobj |
risk,in |
R569 |
T905 |
T885 |
punct |
.,marked |
R570 |
T907 |
T908 |
amod |
Severe,cases |
R571 |
T908 |
T909 |
nsubj |
cases,present |
R572 |
T910 |
T909 |
aux |
can,present |
R573 |
T911 |
T909 |
advmod |
also,present |
R574 |
T912 |
T909 |
prep |
with,present |
R575 |
T913 |
T914 |
compound |
growth,retardation |
R576 |
T914 |
T912 |
pobj |
retardation,with |
R577 |
T915 |
T914 |
cc |
and,retardation |
R578 |
T916 |
T917 |
amod |
primary,neurodegeneration |
R579 |
T917 |
T914 |
conj |
neurodegeneration,retardation |
R580 |
T918 |
T919 |
punct |
[,11 |
R581 |
T919 |
T909 |
parataxis |
11,present |
R582 |
T920 |
T919 |
punct |
],11 |
R583 |
T921 |
T909 |
punct |
.,present |
R584 |
T923 |
T924 |
nsubj |
CS,are |
R585 |
T925 |
T923 |
cc |
and,CS |
R586 |
T926 |
T923 |
conj |
TTD,CS |
R587 |
T927 |
T924 |
punct |
", ",are |
R588 |
T928 |
T924 |
prep |
on,are |
R589 |
T929 |
T930 |
det |
the,hand |
R591 |
T931 |
T930 |
amod |
other,hand |
R592 |
T932 |
T924 |
punct |
", ",are |
R593 |
T933 |
T934 |
amod |
segmental,disorders |
R595 |
T935 |
T934 |
amod |
progeroid,disorders |
R596 |
T936 |
T934 |
acl |
characterised,disorders |
R597 |
T937 |
T936 |
agent |
by,characterised |
R598 |
T938 |
T939 |
amod |
progressive,failure |
R599 |
T939 |
T937 |
pobj |
failure,by |
R600 |
T940 |
T939 |
amod |
post-natal,failure |
R601 |
T941 |
T939 |
compound |
growth,failure |
R602 |
T942 |
T939 |
cc |
and,failure |
R603 |
T943 |
T944 |
amod |
primary,demyelination |
R604 |
T944 |
T939 |
conj |
demyelination,failure |
R605 |
T945 |
T944 |
acl |
resulting,demyelination |
R606 |
T946 |
T945 |
prep |
in,resulting |
R607 |
T947 |
T948 |
amod |
severe,neurodysfunction |
R608 |
T948 |
T946 |
pobj |
neurodysfunction,in |
R609 |
T949 |
T924 |
punct |
", ",are |
R610 |
T950 |
T951 |
cc |
but,without |
R611 |
T951 |
T924 |
prep |
without,are |
R612 |
T952 |
T953 |
det |
a,predisposition |
R613 |
T953 |
T951 |
pobj |
predisposition,without |
R614 |
T954 |
T953 |
amod |
clear,predisposition |
R615 |
T955 |
T953 |
compound |
cancer,predisposition |
R616 |
T956 |
T957 |
punct |
[,12 |
R617 |
T957 |
T924 |
parataxis |
12,are |
R618 |
T958 |
T959 |
punct |
–,15 |
R619 |
T959 |
T957 |
prep |
15,12 |
R620 |
T960 |
T957 |
punct |
],12 |
R621 |
T961 |
T924 |
punct |
.,are |
R622 |
T963 |
T964 |
nsubj |
Patients,display |
R623 |
T965 |
T963 |
prep |
with,Patients |
R624 |
T966 |
T965 |
pobj |
TTD,with |
R625 |
T967 |
T964 |
advmod |
additionally,display |
R626 |
T968 |
T969 |
nmod |
hallmark,hair |
R627 |
T969 |
T964 |
dobj |
hair,display |
R628 |
T970 |
T971 |
npadvmod |
sulphur,deficient |
R629 |
T971 |
T969 |
amod |
deficient,hair |
R630 |
T972 |
T971 |
punct |
-,deficient |
R631 |
T973 |
T969 |
amod |
brittle,hair |
R632 |
T974 |
T969 |
cc |
and,hair |
R633 |
T975 |
T969 |
conj |
nails,hair |
R634 |
T976 |
T969 |
cc |
and,hair |
R635 |
T977 |
T978 |
amod |
scaling,skin |
R636 |
T978 |
T969 |
conj |
skin,hair |
R637 |
T979 |
T980 |
punct |
[,13 |
R638 |
T980 |
T969 |
parataxis |
13,hair |
R639 |
T981 |
T980 |
punct |
],13 |
R640 |
T982 |
T969 |
punct |
", ",hair |
R641 |
T983 |
T969 |
acl |
resulting,hair |
R642 |
T984 |
T983 |
prep |
from,resulting |
R643 |
T985 |
T986 |
det |
a,defect |
R644 |
T986 |
T984 |
pobj |
defect,from |
R645 |
T987 |
T986 |
amod |
basal,defect |
R646 |
T988 |
T986 |
compound |
transcription,defect |
R647 |
T989 |
T986 |
prep |
in,defect |
R648 |
T990 |
T991 |
amod |
specific,types |
R650 |
T992 |
T991 |
compound |
cell,types |
R651 |
T993 |
T994 |
punct |
[,17 |
R652 |
T994 |
T964 |
parataxis |
17,display |
R653 |
T995 |
T994 |
nummod |
16,17 |
R654 |
T996 |
T994 |
punct |
",",17 |
R655 |
T997 |
T994 |
punct |
],17 |
R656 |
T998 |
T964 |
punct |
.,display |
R657 |
T1000 |
T1001 |
det |
A,disorder |
R659 |
T1002 |
T1001 |
amod |
related,disorder |
R660 |
T1004 |
T1001 |
prep |
with,disorder |
R661 |
T1005 |
T1006 |
det |
the,predisposition |
R663 |
T1007 |
T1006 |
compound |
cancer,predisposition |
R664 |
T1008 |
T1006 |
prep |
of,predisposition |
R665 |
T1009 |
T1008 |
pobj |
XP,of |
R666 |
T1010 |
T1006 |
acl |
combined,predisposition |
R667 |
T1011 |
T1010 |
prep |
with,combined |
R668 |
T1012 |
T1013 |
det |
the,complications |
R670 |
T1014 |
T1013 |
amod |
neurodevelopmental,complications |
R671 |
T1015 |
T1013 |
prep |
of,complications |
R672 |
T1016 |
T1015 |
pobj |
CS,of |
R673 |
T1017 |
T1018 |
punct |
(,XPCS |
R674 |
T1018 |
T1016 |
parataxis |
XPCS,CS |
R675 |
T1019 |
T1018 |
punct |
),XPCS |
R676 |
T1020 |
T1003 |
punct |
", ",described |
R677 |
T1021 |
T1022 |
mark |
although,rare |
R678 |
T1022 |
T1003 |
advcl |
rare,described |
R679 |
T1023 |
T1003 |
punct |
", ",described |
R680 |
T1024 |
T1003 |
aux |
has,described |
R681 |
T1025 |
T1003 |
advmod |
also,described |
R682 |
T1026 |
T1003 |
auxpass |
been,described |
R683 |
T1027 |
T1028 |
punct |
[,18 |
R684 |
T1028 |
T1003 |
parataxis |
18,described |
R685 |
T1029 |
T1028 |
punct |
],18 |
R686 |
T1030 |
T1003 |
punct |
.,described |
R687 |
T1032 |
T1033 |
amod |
Many,mutations |
R689 |
T1034 |
T1033 |
compound |
XPD,mutations |
R690 |
T1036 |
T1035 |
auxpass |
are,associated |
R691 |
T1037 |
T1035 |
prep |
with,associated |
R692 |
T1038 |
T1039 |
det |
an,phenotype |
R693 |
T1039 |
T1037 |
pobj |
phenotype,with |
R694 |
T1040 |
T1039 |
amod |
exclusive,phenotype |
R695 |
T1041 |
T1039 |
compound |
disease,phenotype |
R696 |
T1042 |
T1043 |
punct |
(,XPDR722W |
R697 |
T1043 |
T1039 |
parataxis |
XPDR722W,phenotype |
R698 |
T1044 |
T1043 |
advmod |
e.g.,XPDR722W |
R699 |
T1045 |
T1043 |
punct |
", ",XPDR722W |
R700 |
T1046 |
T1043 |
prep |
with,XPDR722W |
R701 |
T1047 |
T1046 |
pobj |
TTD,with |
R702 |
T1048 |
T1043 |
cc |
and,XPDR722W |
R703 |
T1049 |
T1043 |
conj |
XPDR683W,XPDR722W |
R704 |
T1050 |
T1049 |
prep |
with,XPDR683W |
R705 |
T1051 |
T1050 |
pobj |
XP,with |
R706 |
T1052 |
T1043 |
punct |
),XPDR722W |
R707 |
T1053 |
T1035 |
cc |
and,associated |
R708 |
T1054 |
T1055 |
auxpass |
are,viewed |
R710 |
T1056 |
T1055 |
advmod |
thus,viewed |
R711 |
T1057 |
T1055 |
prep |
as,viewed |
R712 |
T1058 |
T1057 |
pobj |
causative,as |
R713 |
T1059 |
T1058 |
prep |
of,causative |
R714 |
T1060 |
T1061 |
det |
the,syndromes |
R716 |
T1062 |
T1061 |
amod |
corresponding,syndromes |
R717 |
T1063 |
T1035 |
punct |
.,associated |
R718 |
T1065 |
T1066 |
nsubjpass |
Alleles,considered |
R719 |
T1067 |
T1068 |
neg |
not,associated |
R720 |
T1068 |
T1065 |
acl |
associated,Alleles |
R721 |
T1069 |
T1068 |
advmod |
exclusively,associated |
R722 |
T1070 |
T1068 |
prep |
with,associated |
R723 |
T1071 |
T1072 |
nummod |
one,disorder |
R724 |
T1072 |
T1070 |
pobj |
disorder,with |
R725 |
T1073 |
T1066 |
auxpass |
are,considered |
R726 |
T1074 |
T1075 |
punct |
“,alleles |
R727 |
T1075 |
T1066 |
oprd |
alleles,considered |
R728 |
T1076 |
T1077 |
advmod |
likely,null |
R729 |
T1077 |
T1075 |
amod |
null,alleles |
R730 |
T1078 |
T1075 |
punct |
”,alleles |
R731 |
T1079 |
T1080 |
punct |
[,20 |
R732 |
T1080 |
T1066 |
parataxis |
20,considered |
R733 |
T1081 |
T1080 |
nummod |
19,20 |
R734 |
T1082 |
T1080 |
punct |
",",20 |
R735 |
T1083 |
T1080 |
punct |
],20 |
R736 |
T1084 |
T1066 |
punct |
.,considered |
R737 |
T1086 |
T1087 |
nsubj |
Some,fail |
R738 |
T1088 |
T1086 |
prep |
of,Some |
R739 |
T1089 |
T1090 |
det |
these,alleles |
R740 |
T1090 |
T1088 |
pobj |
alleles,of |
R741 |
T1091 |
T1092 |
aux |
to,support |
R742 |
T1092 |
T1087 |
xcomp |
support,fail |
R743 |
T1093 |
T1092 |
dobj |
viability,support |
R744 |
T1094 |
T1092 |
prep |
in,support |
R745 |
T1095 |
T1096 |
det |
a,strain |
R746 |
T1096 |
T1094 |
pobj |
strain,in |
R747 |
T1097 |
T1096 |
amod |
haploid,strain |
R748 |
T1098 |
T1096 |
compound |
Schizosaccharomyces,strain |
R749 |
T1099 |
T1096 |
compound |
pombe,strain |
R750 |
T1100 |
T1096 |
compound |
yeast,strain |
R751 |
T1101 |
T1096 |
prep |
with,strain |
R752 |
T1102 |
T1103 |
det |
a,mutation |
R754 |
T1104 |
T1103 |
amod |
null,mutation |
R755 |
T1105 |
T1103 |
prep |
in,mutation |
R756 |
T1106 |
T1107 |
det |
the,rad15 |
R757 |
T1107 |
T1105 |
pobj |
rad15,in |
R758 |
T1108 |
T1107 |
compound |
XPD,rad15 |
R759 |
T1109 |
T1107 |
compound |
homologue,rad15 |
R760 |
T1110 |
T1087 |
cc |
and,fail |
R761 |
T1111 |
T1112 |
auxpass |
are,considered |
R763 |
T1113 |
T1112 |
advmod |
thus,considered |
R764 |
T1114 |
T1112 |
oprd |
devoid,considered |
R765 |
T1115 |
T1114 |
prep |
of,devoid |
R766 |
T1116 |
T1117 |
amod |
significant,activity |
R768 |
T1118 |
T1117 |
amod |
biological,activity |
R769 |
T1119 |
T1120 |
punct |
[,19 |
R770 |
T1120 |
T1112 |
parataxis |
19,considered |
R771 |
T1121 |
T1120 |
punct |
],19 |
R772 |
T1122 |
T1087 |
punct |
.,fail |
R773 |
T1124 |
T1125 |
det |
This,classification |
R774 |
T1125 |
T1126 |
nsubj |
classification,defines |
R775 |
T1127 |
T1125 |
prep |
of,classification |
R776 |
T1128 |
T1127 |
pobj |
alleles,of |
R777 |
T1129 |
T1125 |
prep |
as,classification |
R778 |
T1130 |
T1131 |
preconj |
either,causative |
R779 |
T1131 |
T1129 |
amod |
causative,as |
R780 |
T1132 |
T1131 |
cc |
or,causative |
R781 |
T1133 |
T1131 |
conj |
null,causative |
R782 |
T1134 |
T1126 |
advmod |
currently,defines |
R783 |
T1135 |
T1136 |
dep |
what,refer |
R785 |
T1137 |
T1136 |
nsubj |
we,refer |
R786 |
T1138 |
T1136 |
prep |
to,refer |
R787 |
T1139 |
T1136 |
prep |
as,refer |
R788 |
T1140 |
T1141 |
det |
a,paradigm |
R789 |
T1141 |
T1139 |
pobj |
paradigm,as |
R790 |
T1142 |
T1141 |
punct |
“,paradigm |
R791 |
T1143 |
T1141 |
amod |
monoallelic,paradigm |
R792 |
T1144 |
T1141 |
punct |
”,paradigm |
R793 |
T1145 |
T1141 |
prep |
of,paradigm |
R794 |
T1146 |
T1147 |
compound |
XPD,disease |
R795 |
T1147 |
T1145 |
pobj |
disease,of |
R796 |
T1148 |
T1126 |
punct |
.,defines |
R797 |
T1150 |
T1151 |
advmod |
However,casts |
R798 |
T1152 |
T1151 |
punct |
", ",casts |
R799 |
T1153 |
T1154 |
det |
the,identification |
R800 |
T1154 |
T1151 |
nsubj |
identification,casts |
R801 |
T1155 |
T1154 |
prep |
in,identification |
R802 |
T1156 |
T1157 |
amod |
recent,years |
R803 |
T1157 |
T1155 |
pobj |
years,in |
R804 |
T1158 |
T1157 |
prep |
of,years |
R805 |
T1159 |
T1160 |
compound |
XP,patients |
R806 |
T1160 |
T1158 |
pobj |
patients,of |
R807 |
T1161 |
T1160 |
compound |
complementation,patients |
R808 |
T1162 |
T1163 |
compound |
group,D |
R809 |
T1163 |
T1160 |
compound |
D,patients |
R810 |
T1164 |
T1160 |
prep |
with,patients |
R811 |
T1165 |
T1166 |
amod |
atypical,presentation |
R813 |
T1167 |
T1166 |
compound |
disease,presentation |
R814 |
T1168 |
T1166 |
punct |
", ",presentation |
R815 |
T1169 |
T1166 |
prep |
including,presentation |
R816 |
T1170 |
T1169 |
pobj |
symptoms,including |
R817 |
T1171 |
T1170 |
prep |
of,symptoms |
R818 |
T1172 |
T1173 |
preconj |
both,XP |
R819 |
T1173 |
T1171 |
pobj |
XP,of |
R820 |
T1174 |
T1173 |
cc |
and,XP |
R821 |
T1175 |
T1173 |
conj |
TTD,XP |
R822 |
T1176 |
T1177 |
punct |
[,8 |
R823 |
T1177 |
T1154 |
parataxis |
8,identification |
R824 |
T1178 |
T1177 |
punct |
],8 |
R825 |
T1179 |
T1151 |
punct |
", ",casts |
R826 |
T1180 |
T1151 |
dobj |
doubt,casts |
R827 |
T1181 |
T1151 |
prep |
on,casts |
R828 |
T1182 |
T1183 |
det |
the,ability |
R829 |
T1183 |
T1181 |
pobj |
ability,on |
R830 |
T1184 |
T1183 |
prep |
of,ability |
R831 |
T1185 |
T1186 |
amod |
such,paradigm |
R832 |
T1186 |
T1184 |
pobj |
paradigm,of |
R833 |
T1187 |
T1186 |
det |
a,paradigm |
R834 |
T1188 |
T1186 |
amod |
monoallelic,paradigm |
R835 |
T1189 |
T1190 |
aux |
to,explain |
R836 |
T1190 |
T1183 |
acl |
explain,ability |
R837 |
T1191 |
T1192 |
amod |
clinical,heterogeneity |
R838 |
T1192 |
T1190 |
dobj |
heterogeneity,explain |
R839 |
T1193 |
T1190 |
prep |
in,explain |
R840 |
T1194 |
T1195 |
compound |
compound,heterozygotes |
R841 |
T1195 |
T1193 |
pobj |
heterozygotes,in |
R842 |
T1196 |
T1151 |
punct |
.,casts |
R843 |
T1198 |
T1199 |
advmod |
Previously,generated |
R844 |
T1200 |
T1199 |
punct |
", ",generated |
R845 |
T1201 |
T1199 |
nsubj |
we,generated |
R846 |
T1202 |
T1203 |
det |
a,model |
R847 |
T1203 |
T1199 |
dobj |
model,generated |
R848 |
T1204 |
T1203 |
compound |
TTD,model |
R849 |
T1205 |
T1203 |
compound |
mouse,model |
R850 |
T1206 |
T1207 |
punct |
(,XPDR722W |
R851 |
T1207 |
T1203 |
parataxis |
XPDR722W,model |
R852 |
T1208 |
T1207 |
punct |
),XPDR722W |
R853 |
T1209 |
T1210 |
dep |
that,phenocopies |
R854 |
T1210 |
T1203 |
relcl |
phenocopies,model |
R855 |
T1211 |
T1212 |
det |
the,syndrome |
R857 |
T1213 |
T1212 |
amod |
human,syndrome |
R858 |
T1214 |
T1215 |
punct |
[,21 |
R859 |
T1215 |
T1199 |
parataxis |
21,generated |
R860 |
T1216 |
T1215 |
nummod |
15,21 |
R861 |
T1217 |
T1215 |
punct |
",",21 |
R862 |
T1218 |
T1215 |
punct |
],21 |
R863 |
T1219 |
T1199 |
punct |
.,generated |
R864 |
T1221 |
T1222 |
advmod |
Here,report |
R865 |
T1223 |
T1222 |
nsubj |
we,report |
R866 |
T1224 |
T1225 |
det |
the,generation |
R867 |
T1225 |
T1222 |
dobj |
generation,report |
R868 |
T1226 |
T1225 |
prep |
of,generation |
R869 |
T1227 |
T1228 |
amod |
additional,alleles |
R870 |
T1228 |
T1226 |
pobj |
alleles,of |
R871 |
T1229 |
T1228 |
amod |
mutant,alleles |
R872 |
T1230 |
T1228 |
compound |
Xpd,alleles |
R873 |
T1231 |
T1232 |
dep |
that,fail |
R874 |
T1232 |
T1228 |
relcl |
fail,alleles |
R875 |
T1233 |
T1234 |
aux |
to,support |
R876 |
T1234 |
T1232 |
xcomp |
support,fail |
R877 |
T1235 |
T1234 |
dobj |
viability,support |
R878 |
T1236 |
T1234 |
prep |
on,support |
R879 |
T1237 |
T1238 |
poss |
their,own |
R880 |
T1238 |
T1236 |
pobj |
own,on |
R881 |
T1239 |
T1232 |
cc |
but,fail |
R882 |
T1240 |
T1241 |
advmod |
nevertheless,ameliorate |
R883 |
T1241 |
T1232 |
conj |
ameliorate,fail |
R884 |
T1242 |
T1243 |
npadvmod |
TTD,associated |
R886 |
T1244 |
T1243 |
punct |
-,associated |
R887 |
T1245 |
T1241 |
dobj |
ageing,ameliorate |
R888 |
T1246 |
T1245 |
amod |
premature,ageing |
R889 |
T1247 |
T1245 |
amod |
segmental,ageing |
R890 |
T1248 |
T1245 |
punct |
", ",ageing |
R891 |
T1249 |
T1250 |
amod |
cutaneous,features |
R892 |
T1250 |
T1245 |
conj |
features,ageing |
R893 |
T1251 |
T1250 |
punct |
", ",features |
R894 |
T1252 |
T1253 |
amod |
cellular,capacity |
R895 |
T1253 |
T1250 |
conj |
capacity,features |
R896 |
T1254 |
T1255 |
compound |
DNA,repair |
R897 |
T1255 |
T1253 |
compound |
repair,capacity |
R898 |
T1256 |
T1253 |
punct |
", ",capacity |
R899 |
T1257 |
T1253 |
cc |
and,capacity |
R900 |
T1258 |
T1259 |
compound |
UV,survival |
R901 |
T1259 |
T1253 |
conj |
survival,capacity |
R902 |
T1260 |
T1261 |
advmod |
when,present |
R903 |
T1261 |
T1241 |
advcl |
present,ameliorate |
R904 |
T1262 |
T1261 |
prep |
in,present |
R905 |
T1263 |
T1264 |
det |
a,state |
R906 |
T1264 |
T1262 |
pobj |
state,in |
R907 |
T1265 |
T1264 |
amod |
compound,state |
R908 |
T1266 |
T1264 |
compound |
heterozygote,state |
R909 |
T1267 |
T1222 |
punct |
.,report |
R910 |
T1401 |
T1400 |
prep |
of,Generation |
R911 |
T1402 |
T1403 |
compound |
Xpd,Heterozygotes |
R913 |
T1404 |
T1403 |
compound |
Compound,Heterozygotes |
R914 |
T1406 |
T1407 |
nsubj |
We,generated |
R915 |
T1408 |
T1409 |
det |
an,allele |
R916 |
T1409 |
T1407 |
dobj |
allele,generated |
R917 |
T1410 |
T1409 |
nmod |
Xpd,allele |
R918 |
T1411 |
T1409 |
amod |
knock,allele |
R919 |
T1412 |
T1411 |
punct |
-,knock |
R920 |
T1413 |
T1411 |
prt |
in,knock |
R921 |
T1414 |
T1409 |
prep |
with,allele |
R922 |
T1415 |
T1416 |
det |
a,mutation |
R924 |
T1417 |
T1416 |
compound |
point,mutation |
R925 |
T1418 |
T1416 |
acl |
encoding,mutation |
R926 |
T1419 |
T1420 |
det |
a,change |
R927 |
T1420 |
T1418 |
dobj |
change,encoding |
R928 |
T1421 |
T1420 |
amod |
single,change |
R929 |
T1422 |
T1423 |
compound |
amino,acid |
R930 |
T1423 |
T1420 |
compound |
acid,change |
R931 |
T1424 |
T1425 |
punct |
(,XPDG602D |
R932 |
T1425 |
T1420 |
parataxis |
XPDG602D,change |
R933 |
T1426 |
T1425 |
punct |
),XPDG602D |
R934 |
T1427 |
T1420 |
acl |
found,change |
R935 |
T1428 |
T1427 |
prep |
in,found |
R936 |
T1429 |
T1430 |
det |
the,patient |
R938 |
T1431 |
T1430 |
compound |
XPCS,patient |
R939 |
T1432 |
T1430 |
appos |
XPCS2,patient |
R940 |
T1433 |
T1434 |
punct |
(,1A |
R942 |
T1435 |
T1434 |
compound |
Figure,1A |
R943 |
T1436 |
T1437 |
punct |
–,1C |
R944 |
T1437 |
T1434 |
prep |
1C,1A |
R945 |
T1438 |
T1434 |
punct |
),1A |
R946 |
T1439 |
T1407 |
punct |
.,generated |
R947 |
T1441 |
T1442 |
compound |
mRNA,expression |
R948 |
T1442 |
T1443 |
nsubjpass |
expression,detected |
R949 |
T1444 |
T1442 |
prep |
from,expression |
R950 |
T1445 |
T1446 |
det |
the,allele |
R952 |
T1447 |
T1446 |
amod |
targeted,allele |
R953 |
T1448 |
T1443 |
aux |
could,detected |
R954 |
T1449 |
T1443 |
auxpass |
be,detected |
R955 |
T1450 |
T1443 |
prep |
in,detected |
R956 |
T1451 |
T1452 |
amod |
embryonic,cells |
R958 |
T1453 |
T1452 |
compound |
stem,cells |
R959 |
T1454 |
T1443 |
prep |
by,detected |
R960 |
T1455 |
T1456 |
compound |
RT,PCR |
R962 |
T1457 |
T1456 |
punct |
-,PCR |
R963 |
T1458 |
T1459 |
punct |
(,1D |
R965 |
T1460 |
T1459 |
compound |
Figure,1D |
R966 |
T1461 |
T1459 |
punct |
),1D |
R967 |
T1462 |
T1443 |
punct |
", ",detected |
R968 |
T1463 |
T1464 |
mark |
although,reduced |
R969 |
T1464 |
T1443 |
advcl |
reduced,detected |
R970 |
T1465 |
T1464 |
nsubjpass |
expression,reduced |
R971 |
T1466 |
T1464 |
auxpass |
was,reduced |
R972 |
T1467 |
T1468 |
advmod |
approximately,5 |
R973 |
T1468 |
T1464 |
npadvmod |
5,reduced |
R974 |
T1469 |
T1468 |
punct |
-,5 |
R975 |
T1470 |
T1468 |
advmod |
fold,5 |
R976 |
T1471 |
T1464 |
advcl |
relative,reduced |
R977 |
T1472 |
T1471 |
prep |
to,relative |
R978 |
T1473 |
T1474 |
compound |
wt,levels |
R979 |
T1474 |
T1472 |
pobj |
levels,to |
R980 |
T1475 |
T1474 |
compound |
mRNA,levels |
R981 |
T1476 |
T1474 |
compound |
transcript,levels |
R982 |
T1477 |
T1478 |
mark |
as,determined |
R983 |
T1478 |
T1464 |
advcl |
determined,reduced |
R984 |
T1479 |
T1478 |
prep |
by,determined |
R985 |
T1480 |
T1479 |
pobj |
Northern,by |
R986 |
T1481 |
T1480 |
amod |
blotting,Northern |
R987 |
T1482 |
T1480 |
prep |
of,Northern |
R988 |
T1483 |
T1482 |
pobj |
RNA,of |
R989 |
T1484 |
T1483 |
prep |
from,RNA |
R990 |
T1485 |
T1486 |
det |
the,testis |
R991 |
T1486 |
T1484 |
pobj |
testis,from |
R992 |
T1487 |
T1486 |
prep |
of,testis |
R993 |
T1488 |
T1489 |
amod |
heterozygous,animals |
R994 |
T1489 |
T1487 |
pobj |
animals,of |
R995 |
T1490 |
T1491 |
punct |
(,1E |
R997 |
T1492 |
T1491 |
compound |
Figure,1E |
R998 |
T1493 |
T1491 |
punct |
),1E |
R999 |
T1494 |
T1443 |
punct |
.,detected |
R1000 |
T1496 |
T1497 |
mark |
Because,was |
R1001 |
T1497 |
T1500 |
advcl |
was,expected |
R1002 |
T1498 |
T1499 |
compound |
patient,XPCS2 |
R1003 |
T1499 |
T1497 |
nsubj |
XPCS2,was |
R1004 |
T1501 |
T1502 |
det |
a,hemizygote |
R1005 |
T1502 |
T1497 |
attr |
hemizygote,was |
R1006 |
T1503 |
T1502 |
prep |
with,hemizygote |
R1007 |
T1504 |
T1505 |
amod |
mutant,protein |
R1009 |
T1506 |
T1505 |
compound |
XPD,protein |
R1010 |
T1507 |
T1508 |
punct |
(,XPDG602D |
R1011 |
T1508 |
T1505 |
parataxis |
XPDG602D,protein |
R1012 |
T1509 |
T1508 |
punct |
),XPDG602D |
R1013 |
T1510 |
T1505 |
acl |
expressed,protein |
R1014 |
T1511 |
T1510 |
prep |
from,expressed |
R1015 |
T1512 |
T1513 |
det |
a,allele |
R1017 |
T1514 |
T1513 |
amod |
single,allele |
R1018 |
T1515 |
T1500 |
punct |
", ",expected |
R1019 |
T1516 |
T1517 |
det |
the,mutation |
R1021 |
T1518 |
T1517 |
amod |
corresponding,mutation |
R1022 |
T1519 |
T1500 |
auxpass |
was,expected |
R1023 |
T1520 |
T1521 |
aux |
to,be |
R1024 |
T1521 |
T1500 |
xcomp |
be,expected |
R1025 |
T1522 |
T1521 |
acomp |
viable,be |
R1026 |
T1523 |
T1521 |
prep |
in,be |
R1027 |
T1524 |
T1525 |
det |
the,state |
R1029 |
T1526 |
T1525 |
amod |
homozygous,state |
R1030 |
T1527 |
T1500 |
punct |
.,expected |
R1031 |
T1529 |
T1530 |
advmod |
However,observed |
R1032 |
T1531 |
T1530 |
punct |
", ",observed |
R1033 |
T1532 |
T1533 |
amod |
homozygous,mice |
R1035 |
T1534 |
T1533 |
amod |
mutant,mice |
R1036 |
T1535 |
T1530 |
auxpass |
were,observed |
R1037 |
T1536 |
T1530 |
neg |
not,observed |
R1038 |
T1537 |
T1530 |
punct |
", ",observed |
R1039 |
T1538 |
T1539 |
preconj |
neither,amongst |
R1040 |
T1539 |
T1530 |
prep |
amongst,observed |
R1041 |
T1540 |
T1541 |
amod |
live,births |
R1042 |
T1541 |
T1539 |
pobj |
births,amongst |
R1043 |
T1542 |
T1541 |
cc |
nor,births |
R1044 |
T1543 |
T1544 |
amod |
embryonic,day |
R1045 |
T1544 |
T1545 |
nmod |
day,embryos |
R1046 |
T1545 |
T1541 |
conj |
embryos,births |
R1047 |
T1546 |
T1544 |
nummod |
13.5,day |
R1048 |
T1547 |
T1544 |
punct |
(,day |
R1049 |
T1548 |
T1544 |
appos |
E13.5,day |
R1050 |
T1549 |
T1544 |
punct |
),day |
R1051 |
T1550 |
T1544 |
cc |
or,day |
R1052 |
T1551 |
T1544 |
conj |
E3.5,day |
R1053 |
T1552 |
T1553 |
punct |
(,Table |
R1054 |
T1553 |
T1530 |
parataxis |
Table,observed |
R1055 |
T1554 |
T1553 |
nummod |
1,Table |
R1056 |
T1555 |
T1553 |
punct |
),Table |
R1057 |
T1556 |
T1530 |
punct |
.,observed |
R1058 |
T1558 |
T1559 |
det |
The,allele |
R1059 |
T1559 |
T1564 |
nsubjpass |
allele,designated |
R1060 |
T1560 |
T1559 |
amod |
corresponding,allele |
R1061 |
T1561 |
T1559 |
amod |
hypomorphic,allele |
R1062 |
T1562 |
T1559 |
punct |
", ",allele |
R1063 |
T1563 |
T1559 |
amod |
mutant,allele |
R1064 |
T1565 |
T1564 |
auxpass |
was,designated |
R1065 |
T1566 |
T1564 |
advmod |
thus,designated |
R1066 |
T1567 |
T1564 |
prep |
as,designated |
R1067 |
T1568 |
T1569 |
amod |
homozygous,lethal |
R1068 |
T1569 |
T1567 |
pobj |
lethal,as |
R1069 |
T1570 |
T1571 |
punct |
(,†XPCS |
R1070 |
T1571 |
T1569 |
parataxis |
†XPCS,lethal |
R1071 |
T1572 |
T1571 |
punct |
),†XPCS |
R1072 |
T1573 |
T1564 |
punct |
.,designated |
R1073 |
T1575 |
T1576 |
amod |
Homozygous,lethality |
R1074 |
T1576 |
T1577 |
nsubj |
lethality,is |
R1075 |
T1578 |
T1576 |
prep |
of,lethality |
R1076 |
T1579 |
T1580 |
det |
the,allele |
R1078 |
T1581 |
T1580 |
compound |
XPCS,allele |
R1079 |
T1582 |
T1583 |
advmod |
likely,due |
R1080 |
T1583 |
T1577 |
prep |
due,is |
R1081 |
T1584 |
T1583 |
prep |
to,due |
R1082 |
T1585 |
T1586 |
amod |
reduced,levels |
R1083 |
T1586 |
T1584 |
pobj |
levels,to |
R1084 |
T1587 |
T1586 |
prep |
of,levels |
R1085 |
T1588 |
T1587 |
pobj |
expression,of |
R1086 |
T1589 |
T1588 |
prep |
of,expression |
R1087 |
T1590 |
T1591 |
det |
this,protein |
R1089 |
T1592 |
T1591 |
amod |
essential,protein |
R1090 |
T1593 |
T1586 |
prep |
as,levels |
R1091 |
T1594 |
T1595 |
det |
a,result |
R1092 |
T1595 |
T1593 |
pobj |
result,as |
R1093 |
T1596 |
T1595 |
prep |
of,result |
R1094 |
T1597 |
T1598 |
compound |
gene,targeting |
R1095 |
T1598 |
T1596 |
pobj |
targeting,of |
R1096 |
T1599 |
T1600 |
punct |
(,1A |
R1098 |
T1601 |
T1600 |
compound |
Figure,1A |
R1099 |
T1602 |
T1600 |
punct |
),1A |
R1100 |
T1603 |
T1604 |
amod |
rather,than |
R1101 |
T1604 |
T1584 |
cc |
than,to |
R1102 |
T1605 |
T1584 |
conj |
to,to |
R1103 |
T1606 |
T1607 |
det |
the,mutation |
R1104 |
T1607 |
T1605 |
pobj |
mutation,to |
R1105 |
T1608 |
T1607 |
appos |
itself,mutation |
R1106 |
T1609 |
T1577 |
punct |
.,is |
R1107 |
T1611 |
T1612 |
compound |
Xpd,ablation |
R1108 |
T1612 |
T1613 |
nsubj |
ablation,is |
R1109 |
T1614 |
T1615 |
punct |
(,KO |
R1110 |
T1615 |
T1612 |
parataxis |
KO,ablation |
R1111 |
T1616 |
T1615 |
compound |
XpdKO,KO |
R1112 |
T1617 |
T1615 |
punct |
/,KO |
R1113 |
T1618 |
T1615 |
punct |
),KO |
R1114 |
T1619 |
T1620 |
advmod |
similarly,incompatible |
R1115 |
T1620 |
T1613 |
acomp |
incompatible,is |
R1116 |
T1621 |
T1620 |
prep |
with,incompatible |
R1117 |
T1622 |
T1621 |
pobj |
life,with |
R1118 |
T1623 |
T1622 |
prep |
beyond,life |
R1119 |
T1624 |
T1625 |
det |
the,stages |
R1121 |
T1626 |
T1625 |
amod |
earliest,stages |
R1122 |
T1627 |
T1625 |
prep |
of,stages |
R1123 |
T1628 |
T1627 |
pobj |
embryogenesis,of |
R1124 |
T1629 |
T1630 |
punct |
[,22 |
R1125 |
T1630 |
T1613 |
parataxis |
22,is |
R1126 |
T1631 |
T1630 |
punct |
],22 |
R1127 |
T1632 |
T1613 |
punct |
.,is |
R1128 |
T1634 |
T1635 |
advcl |
Consistent,was |
R1129 |
T1636 |
T1634 |
prep |
with,Consistent |
R1130 |
T1637 |
T1638 |
det |
this,interpretation |
R1131 |
T1638 |
T1636 |
pobj |
interpretation,with |
R1132 |
T1639 |
T1635 |
punct |
", ",was |
R1133 |
T1640 |
T1641 |
det |
a,mutation |
R1134 |
T1641 |
T1635 |
nsubj |
mutation,was |
R1135 |
T1642 |
T1641 |
amod |
different,mutation |
R1136 |
T1643 |
T1641 |
amod |
targeted,mutation |
R1137 |
T1644 |
T1641 |
compound |
Xpd,mutation |
R1138 |
T1645 |
T1641 |
acl |
encoding,mutation |
R1139 |
T1646 |
T1645 |
dobj |
XPDR683W,encoding |
R1140 |
T1647 |
T1646 |
punct |
", ",XPDR683W |
R1141 |
T1648 |
T1649 |
dep |
which,associated |
R1143 |
T1650 |
T1649 |
auxpass |
is,associated |
R1144 |
T1651 |
T1649 |
prep |
with,associated |
R1145 |
T1652 |
T1651 |
pobj |
XP,with |
R1146 |
T1653 |
T1649 |
prep |
in,associated |
R1147 |
T1654 |
T1655 |
det |
the,state |
R1149 |
T1656 |
T1655 |
amod |
homozygous,state |
R1150 |
T1657 |
T1649 |
prep |
in,associated |
R1151 |
T1658 |
T1657 |
pobj |
humans,in |
R1152 |
T1659 |
T1635 |
punct |
", ",was |
R1153 |
T1660 |
T1661 |
advmod |
similarly,underexpressed |
R1154 |
T1661 |
T1635 |
acomp |
underexpressed,was |
R1155 |
T1662 |
T1661 |
cc |
and,underexpressed |
R1156 |
T1663 |
T1661 |
conj |
lethal,underexpressed |
R1157 |
T1664 |
T1635 |
prep |
in,was |
R1158 |
T1665 |
T1666 |
det |
the,state |
R1160 |
T1667 |
T1666 |
amod |
homozygous,state |
R1161 |
T1668 |
T1669 |
punct |
(,designated |
R1162 |
T1669 |
T1635 |
parataxis |
designated,was |
R1163 |
T1670 |
T1669 |
prep |
as,designated |
R1164 |
T1671 |
T1672 |
compound |
†XP,allele |
R1165 |
T1672 |
T1670 |
pobj |
allele,as |
R1166 |
T1673 |
T1669 |
punct |
),designated |
R1167 |
T1674 |
T1675 |
punct |
(,1A |
R1169 |
T1676 |
T1675 |
compound |
Figure,1A |
R1170 |
T1677 |
T1678 |
punct |
–,1C |
R1171 |
T1678 |
T1675 |
prep |
1C,1A |
R1172 |
T1679 |
T1675 |
punct |
;,1A |
R1173 |
T1680 |
T1675 |
appos |
Table,1A |
R1174 |
T1681 |
T1680 |
nummod |
1,Table |
R1175 |
T1682 |
T1675 |
punct |
;,1A |
R1176 |
T1683 |
T1684 |
amod |
unpublished,data |
R1177 |
T1684 |
T1675 |
appos |
data,1A |
R1178 |
T1685 |
T1675 |
punct |
),1A |
R1179 |
T1686 |
T1635 |
punct |
.,was |
R1180 |
T1688 |
T1689 |
advmod |
Also,resulted |
R1181 |
T1690 |
T1689 |
punct |
", ",resulted |
R1182 |
T1691 |
T1692 |
det |
a,approach |
R1183 |
T1692 |
T1689 |
nsubj |
approach,resulted |
R1184 |
T1693 |
T1692 |
amod |
different,approach |
R1185 |
T1694 |
T1692 |
compound |
targeting,approach |
R1186 |
T1695 |
T1692 |
acl |
leading,approach |
R1187 |
T1696 |
T1695 |
prep |
to,leading |
R1188 |
T1697 |
T1698 |
det |
the,use |
R1189 |
T1698 |
T1696 |
pobj |
use,to |
R1190 |
T1699 |
T1698 |
prep |
of,use |
R1191 |
T1700 |
T1701 |
det |
the,UTR |
R1192 |
T1701 |
T1699 |
pobj |
UTR,of |
R1193 |
T1702 |
T1701 |
amod |
native,UTR |
R1194 |
T1703 |
T1701 |
nummod |
3,UTR |
R1195 |
T1704 |
T1703 |
punct |
′,3 |
R1196 |
T1705 |
T1698 |
cc |
and,use |
R1197 |
T1706 |
T1698 |
conj |
removal,use |
R1198 |
T1707 |
T1706 |
prep |
of,removal |
R1199 |
T1708 |
T1709 |
det |
the,gene |
R1201 |
T1710 |
T1709 |
compound |
neo,gene |
R1202 |
T1711 |
T1689 |
prep |
in,resulted |
R1203 |
T1712 |
T1711 |
pobj |
normalisation,in |
R1204 |
T1713 |
T1712 |
prep |
of,normalisation |
R1205 |
T1714 |
T1715 |
compound |
XpdXPCS,levels |
R1207 |
T1716 |
T1715 |
compound |
mRNA,levels |
R1208 |
T1717 |
T1712 |
cc |
and,normalisation |
R1209 |
T1718 |
T1719 |
amod |
viable,animals |
R1210 |
T1719 |
T1712 |
conj |
animals,normalisation |
R1211 |
T1720 |
T1719 |
amod |
homozygous,animals |
R1212 |
T1721 |
T1722 |
nmod |
XpdXPCS,XPCS |
R1213 |
T1722 |
T1719 |
nmod |
XPCS,animals |
R1214 |
T1723 |
T1722 |
punct |
/,XPCS |
R1215 |
T1724 |
T1725 |
punct |
(,G602D |
R1217 |
T1726 |
T1725 |
compound |
XPDG602D,G602D |
R1218 |
T1727 |
T1725 |
punct |
/,G602D |
R1219 |
T1728 |
T1725 |
punct |
),G602D |
R1220 |
T1729 |
T1730 |
punct |
[,23 |
R1221 |
T1730 |
T1689 |
parataxis |
23,resulted |
R1222 |
T1731 |
T1730 |
punct |
],23 |
R1223 |
T1732 |
T1689 |
punct |
.,resulted |
R1226 |
T1954 |
T1955 |
punct |
“,Allele |
R1227 |
T1955 |
T1958 |
nsubj |
Allele,Alleviate |
R1228 |
T1956 |
T1955 |
amod |
Null,Allele |
R1229 |
T1957 |
T1955 |
punct |
”,Allele |
R1230 |
T1959 |
T1958 |
aux |
Can,Alleviate |
R1231 |
T1960 |
T1961 |
amod |
Developmental,Delay |
R1232 |
T1961 |
T1958 |
dobj |
Delay,Alleviate |
R1233 |
T1962 |
T1961 |
punct |
", ",Delay |
R1234 |
T1963 |
T1964 |
nmod |
Skin,Features |
R1235 |
T1964 |
T1961 |
appos |
Features,Delay |
R1236 |
T1965 |
T1963 |
punct |
", ",Skin |
R1237 |
T1966 |
T1963 |
cc |
and,Skin |
R1238 |
T1967 |
T1963 |
conj |
Hair,Skin |
R1239 |
T1968 |
T1964 |
prep |
of,Features |
R1240 |
T1969 |
T1968 |
pobj |
TTD,of |
R1241 |
T1971 |
T1972 |
aux |
To,test |
R1242 |
T1972 |
T1973 |
advcl |
test,combined |
R1243 |
T1974 |
T1975 |
det |
the,potential |
R1244 |
T1975 |
T1972 |
dobj |
potential,test |
R1245 |
T1976 |
T1975 |
prep |
of,potential |
R1246 |
T1977 |
T1978 |
det |
a,allele |
R1247 |
T1978 |
T1976 |
pobj |
allele,of |
R1248 |
T1979 |
T1978 |
amod |
homozygous,allele |
R1249 |
T1980 |
T1978 |
amod |
lethal,allele |
R1250 |
T1981 |
T1978 |
punct |
“,allele |
R1251 |
T1982 |
T1978 |
amod |
null,allele |
R1252 |
T1983 |
T1978 |
punct |
”,allele |
R1253 |
T1984 |
T1985 |
aux |
to,contribute |
R1254 |
T1985 |
T1975 |
acl |
contribute,potential |
R1255 |
T1986 |
T1985 |
advmod |
nevertheless,contribute |
R1256 |
T1987 |
T1985 |
prep |
to,contribute |
R1257 |
T1988 |
T1989 |
amod |
organismal,phenotype |
R1258 |
T1989 |
T1987 |
pobj |
phenotype,to |
R1259 |
T1990 |
T1973 |
punct |
", ",combined |
R1260 |
T1991 |
T1973 |
nsubj |
we,combined |
R1261 |
T1992 |
T1993 |
det |
an,allele |
R1262 |
T1993 |
T1973 |
dobj |
allele,combined |
R1263 |
T1994 |
T1993 |
compound |
Xpd†XPCS,allele |
R1264 |
T1995 |
T1993 |
prep |
with,allele |
R1265 |
T1996 |
T1997 |
det |
a,allele |
R1266 |
T1997 |
T1995 |
pobj |
allele,with |
R1267 |
T1998 |
T1997 |
amod |
viable,allele |
R1268 |
T1999 |
T1997 |
compound |
XpdTTD,allele |
R1269 |
T2000 |
T1973 |
prep |
by,combined |
R1270 |
T2001 |
T2000 |
pcomp |
crossing,by |
R1271 |
T2002 |
T2003 |
det |
the,animals |
R1272 |
T2003 |
T2001 |
dobj |
animals,crossing |
R1273 |
T2004 |
T2003 |
amod |
corresponding,animals |
R1274 |
T2005 |
T2003 |
amod |
heterozygous,animals |
R1275 |
T2006 |
T1973 |
punct |
.,combined |
R1276 |
T2008 |
T2009 |
advcl |
Similar,born |
R1277 |
T2010 |
T2008 |
prep |
to,Similar |
R1278 |
T2011 |
T2012 |
amod |
hemizygous,mice |
R1279 |
T2012 |
T2010 |
pobj |
mice,to |
R1280 |
T2013 |
T2012 |
compound |
TTD,mice |
R1281 |
T2014 |
T2012 |
acl |
carrying,mice |
R1282 |
T2015 |
T2016 |
nummod |
one,allele |
R1283 |
T2016 |
T2014 |
dobj |
allele,carrying |
R1284 |
T2017 |
T2016 |
amod |
true,allele |
R1285 |
T2018 |
T2019 |
compound |
Xpd,knockout |
R1286 |
T2019 |
T2016 |
compound |
knockout,allele |
R1287 |
T2020 |
T2021 |
punct |
(,KO |
R1288 |
T2021 |
T2016 |
parataxis |
KO,allele |
R1289 |
T2022 |
T2021 |
compound |
XpdTTD,KO |
R1290 |
T2023 |
T2021 |
punct |
/,KO |
R1291 |
T2024 |
T2021 |
punct |
),KO |
R1292 |
T2025 |
T2009 |
punct |
", ",born |
R1293 |
T2026 |
T2027 |
nmod |
compound,mice |
R1294 |
T2027 |
T2009 |
nsubjpass |
mice,born |
R1295 |
T2028 |
T2027 |
amod |
heterozygous,mice |
R1296 |
T2029 |
T2030 |
compound |
XpdTTD,†XPCS |
R1297 |
T2030 |
T2027 |
compound |
†XPCS,mice |
R1298 |
T2031 |
T2030 |
punct |
/,†XPCS |
R1299 |
T2032 |
T2009 |
auxpass |
were,born |
R1300 |
T2033 |
T2009 |
prep |
at,born |
R1301 |
T2034 |
T2035 |
det |
the,frequencies |
R1302 |
T2035 |
T2033 |
pobj |
frequencies,at |
R1303 |
T2036 |
T2035 |
amod |
expected,frequencies |
R1304 |
T2037 |
T2035 |
amod |
Mendelian,frequencies |
R1305 |
T2038 |
T2009 |
punct |
.,born |
R1306 |
T2040 |
T2041 |
nsubjpass |
Expression,reduced |
R1307 |
T2042 |
T2040 |
prep |
from,Expression |
R1308 |
T2043 |
T2044 |
det |
the,allele |
R1309 |
T2044 |
T2042 |
pobj |
allele,from |
R1310 |
T2045 |
T2044 |
compound |
Xpd†XPCS,allele |
R1311 |
T2046 |
T2041 |
auxpass |
was,reduced |
R1312 |
T2047 |
T2041 |
advmod |
also,reduced |
R1313 |
T2048 |
T2041 |
prep |
in,reduced |
R1314 |
T2049 |
T2050 |
det |
the,testis |
R1315 |
T2050 |
T2048 |
pobj |
testis,in |
R1316 |
T2051 |
T2050 |
prep |
of,testis |
R1317 |
T2052 |
T2053 |
nmod |
compound,animals |
R1318 |
T2053 |
T2051 |
pobj |
animals,of |
R1319 |
T2054 |
T2053 |
amod |
heterozygous,animals |
R1320 |
T2055 |
T2041 |
punct |
", ",reduced |
R1321 |
T2056 |
T2057 |
mark |
whereas,increased |
R1322 |
T2057 |
T2041 |
advcl |
increased,reduced |
R1323 |
T2058 |
T2057 |
nsubjpass |
expression,increased |
R1324 |
T2059 |
T2058 |
prep |
from,expression |
R1325 |
T2060 |
T2061 |
det |
the,allele |
R1326 |
T2061 |
T2059 |
pobj |
allele,from |
R1327 |
T2062 |
T2061 |
compound |
XpdTTD,allele |
R1328 |
T2063 |
T2057 |
auxpass |
was,increased |
R1329 |
T2064 |
T2057 |
advcl |
relative,increased |
R1330 |
T2065 |
T2064 |
prep |
to,relative |
R1331 |
T2066 |
T2065 |
pobj |
wt,to |
R1332 |
T2067 |
T2057 |
prep |
by,increased |
R1333 |
T2068 |
T2069 |
punct |
~,5-fold |
R1334 |
T2069 |
T2067 |
pobj |
5-fold,by |
R1335 |
T2070 |
T2071 |
punct |
(,1E |
R1336 |
T2071 |
T2057 |
parataxis |
1E,increased |
R1337 |
T2072 |
T2071 |
compound |
Figure,1E |
R1338 |
T2073 |
T2071 |
punct |
),1E |
R1339 |
T2074 |
T2041 |
punct |
.,reduced |
R1340 |
T2076 |
T2077 |
prep |
Because,were |
R1341 |
T2078 |
T2076 |
pcomp |
of,Because |
R1342 |
T2079 |
T2080 |
det |
a,lack |
R1343 |
T2080 |
T2076 |
pobj |
lack,Because |
R1344 |
T2081 |
T2080 |
prep |
of,lack |
R1345 |
T2082 |
T2083 |
amod |
available,antibodies |
R1346 |
T2083 |
T2081 |
pobj |
antibodies,of |
R1347 |
T2084 |
T2083 |
cc |
and,antibodies |
R1348 |
T2085 |
T2086 |
det |
the,inability |
R1349 |
T2086 |
T2083 |
conj |
inability,antibodies |
R1350 |
T2087 |
T2088 |
aux |
to,distinguish |
R1351 |
T2088 |
T2086 |
acl |
distinguish,inability |
R1352 |
T2089 |
T2088 |
prep |
amongst,distinguish |
R1353 |
T2090 |
T2091 |
amod |
various,forms |
R1354 |
T2091 |
T2089 |
pobj |
forms,amongst |
R1355 |
T2092 |
T2091 |
amod |
mutant,forms |
R1356 |
T2093 |
T2091 |
prep |
of,forms |
R1357 |
T2094 |
T2093 |
pobj |
XPD,of |
R1358 |
T2095 |
T2091 |
acl |
differing,forms |
R1359 |
T2096 |
T2095 |
advmod |
only,differing |
R1360 |
T2097 |
T2095 |
prep |
by,differing |
R1361 |
T2098 |
T2099 |
amod |
single,substitutions |
R1362 |
T2099 |
T2097 |
pobj |
substitutions,by |
R1363 |
T2100 |
T2101 |
compound |
amino,acid |
R1364 |
T2101 |
T2099 |
compound |
acid,substitutions |
R1365 |
T2102 |
T2077 |
punct |
", ",were |
R1366 |
T2103 |
T2077 |
nsubj |
we,were |
R1367 |
T2104 |
T2077 |
acomp |
unable,were |
R1368 |
T2105 |
T2106 |
aux |
to,ascertain |
R1369 |
T2106 |
T2104 |
xcomp |
ascertain,unable |
R1370 |
T2107 |
T2108 |
det |
the,amount |
R1371 |
T2108 |
T2106 |
dobj |
amount,ascertain |
R1372 |
T2109 |
T2108 |
amod |
relative,amount |
R1373 |
T2110 |
T2108 |
prep |
of,amount |
R1374 |
T2111 |
T2112 |
compound |
XPD,protein |
R1375 |
T2112 |
T2110 |
pobj |
protein,of |
R1376 |
T2113 |
T2112 |
prep |
from,protein |
R1377 |
T2114 |
T2115 |
det |
the,alleles |
R1378 |
T2115 |
T2113 |
pobj |
alleles,from |
R1379 |
T2116 |
T2115 |
amod |
different,alleles |
R1380 |
T2117 |
T2077 |
punct |
.,were |
R1381 |
T2119 |
T2120 |
prep |
Despite,ameliorated |
R1382 |
T2121 |
T2122 |
amod |
reduced,levels |
R1383 |
T2122 |
T2119 |
pobj |
levels,Despite |
R1384 |
T2123 |
T2122 |
prep |
of,levels |
R1385 |
T2124 |
T2125 |
compound |
mRNA,expression |
R1386 |
T2125 |
T2123 |
pobj |
expression,of |
R1387 |
T2126 |
T2120 |
punct |
", ",ameliorated |
R1388 |
T2127 |
T2128 |
det |
the,allele |
R1389 |
T2128 |
T2120 |
nsubj |
allele,ameliorated |
R1390 |
T2129 |
T2128 |
amod |
homozygous,allele |
R1391 |
T2130 |
T2128 |
amod |
lethal,allele |
R1392 |
T2131 |
T2128 |
compound |
Xpd†XPCS,allele |
R1393 |
T2132 |
T2133 |
amod |
multiple,symptoms |
R1394 |
T2133 |
T2120 |
dobj |
symptoms,ameliorated |
R1395 |
T2134 |
T2135 |
npadvmod |
XpdTTD,associated |
R1396 |
T2135 |
T2133 |
amod |
associated,symptoms |
R1397 |
T2136 |
T2135 |
punct |
-,associated |
R1398 |
T2137 |
T2133 |
compound |
disease,symptoms |
R1399 |
T2138 |
T2120 |
prep |
in,ameliorated |
R1400 |
T2139 |
T2140 |
amod |
compound,animals |
R1401 |
T2140 |
T2138 |
pobj |
animals,in |
R1402 |
T2141 |
T2140 |
amod |
heterozygous,animals |
R1403 |
T2142 |
T2143 |
compound |
XpdTTD,†XPCS |
R1404 |
T2143 |
T2140 |
compound |
†XPCS,animals |
R1405 |
T2144 |
T2143 |
punct |
/,†XPCS |
R1406 |
T2145 |
T2120 |
prep |
including,ameliorated |
R1407 |
T2146 |
T2147 |
det |
the,hair |
R1408 |
T2147 |
T2145 |
pobj |
hair,including |
R1409 |
T2148 |
T2147 |
nmod |
hallmark,hair |
R1410 |
T2149 |
T2147 |
amod |
brittle,hair |
R1411 |
T2150 |
T2147 |
cc |
and,hair |
R1412 |
T2151 |
T2152 |
amod |
cutaneous,features |
R1413 |
T2152 |
T2147 |
conj |
features,hair |
R1414 |
T2153 |
T2154 |
advmod |
fully,penetrant |
R1415 |
T2154 |
T2147 |
amod |
penetrant,hair |
R1416 |
T2155 |
T2154 |
prep |
in,penetrant |
R1417 |
T2156 |
T2157 |
advmod |
homo,hemizygous |
R1418 |
T2157 |
T2160 |
amod |
hemizygous,mice |
R1419 |
T2158 |
T2157 |
punct |
-,hemizygous |
R1420 |
T2159 |
T2157 |
cc |
and,hemizygous |
R1421 |
T2160 |
T2155 |
pobj |
mice,in |
R1422 |
T2161 |
T2160 |
compound |
TTD,mice |
R1423 |
T2162 |
T2163 |
punct |
(,2A |
R1424 |
T2163 |
T2120 |
parataxis |
2A,ameliorated |
R1425 |
T2164 |
T2163 |
compound |
Figure,2A |
R1426 |
T2165 |
T2166 |
punct |
–,2C |
R1427 |
T2166 |
T2163 |
prep |
2C,2A |
R1428 |
T2167 |
T2163 |
punct |
),2A |
R1429 |
T2168 |
T2120 |
punct |
.,ameliorated |
R1430 |
T2170 |
T2171 |
prep |
In,displayed |
R1431 |
T2172 |
T2173 |
amod |
marked,contrast |
R1432 |
T2173 |
T2170 |
pobj |
contrast,In |
R1433 |
T2174 |
T2173 |
prep |
to,contrast |
R1434 |
T2175 |
T2176 |
nmod |
XpdTTD,TTD |
R1435 |
T2176 |
T2178 |
nmod |
TTD,mice |
R1436 |
T2177 |
T2176 |
punct |
/,TTD |
R1437 |
T2178 |
T2174 |
pobj |
mice,to |
R1438 |
T2179 |
T2176 |
punct |
(,TTD |
R1439 |
T2180 |
T2176 |
cc |
and,TTD |
R1440 |
T2181 |
T2182 |
compound |
XpdTTD,KO |
R1441 |
T2182 |
T2176 |
conj |
KO,TTD |
R1442 |
T2183 |
T2182 |
punct |
/,KO |
R1443 |
T2184 |
T2178 |
punct |
),mice |
R1444 |
T2185 |
T2178 |
punct |
", ",mice |
R1445 |
T2186 |
T2187 |
dep |
which,display |
R1446 |
T2187 |
T2178 |
relcl |
display,mice |
R1447 |
T2188 |
T2189 |
amod |
complete,loss |
R1448 |
T2189 |
T2187 |
dobj |
loss,display |
R1449 |
T2190 |
T2189 |
compound |
hair,loss |
R1450 |
T2191 |
T2189 |
prep |
in,loss |
R1451 |
T2192 |
T2193 |
det |
the,cycle |
R1452 |
T2193 |
T2191 |
pobj |
cycle,in |
R1453 |
T2194 |
T2193 |
amod |
first,cycle |
R1454 |
T2195 |
T2193 |
compound |
hair,cycle |
R1455 |
T2196 |
T2189 |
cc |
and,loss |
R1456 |
T2197 |
T2198 |
amod |
partial,loss |
R1457 |
T2198 |
T2189 |
conj |
loss,loss |
R1458 |
T2199 |
T2198 |
compound |
hair,loss |
R1459 |
T2200 |
T2198 |
prep |
in,loss |
R1460 |
T2201 |
T2202 |
amod |
subsequent,cycles |
R1461 |
T2202 |
T2200 |
pobj |
cycles,in |
R1462 |
T2203 |
T2187 |
prep |
throughout,display |
R1463 |
T2204 |
T2205 |
poss |
their,lives |
R1464 |
T2205 |
T2203 |
pobj |
lives,throughout |
R1465 |
T2206 |
T2207 |
punct |
[,21 |
R1466 |
T2207 |
T2187 |
parataxis |
21,display |
R1467 |
T2208 |
T2207 |
punct |
],21 |
R1468 |
T2209 |
T2171 |
punct |
", ",displayed |
R1469 |
T2210 |
T2211 |
nmod |
compound,mice |
R1470 |
T2211 |
T2171 |
nsubj |
mice,displayed |
R1471 |
T2212 |
T2211 |
amod |
heterozygous,mice |
R1472 |
T2213 |
T2211 |
compound |
XpdTTD/†XPCS,mice |
R1473 |
T2214 |
T2215 |
det |
some,loss |
R1474 |
T2215 |
T2171 |
dobj |
loss,displayed |
R1475 |
T2216 |
T2215 |
compound |
hair,loss |
R1476 |
T2217 |
T2218 |
advmod |
only,during |
R1477 |
T2218 |
T2171 |
prep |
during,displayed |
R1478 |
T2219 |
T2220 |
det |
the,cycle |
R1479 |
T2220 |
T2218 |
pobj |
cycle,during |
R1480 |
T2221 |
T2220 |
amod |
first,cycle |
R1481 |
T2222 |
T2220 |
compound |
hair,cycle |
R1482 |
T2223 |
T2218 |
cc |
and,during |
R1483 |
T2224 |
T2225 |
advmod |
only,locally |
R1484 |
T2225 |
T2226 |
advmod |
locally,at |
R1485 |
T2226 |
T2218 |
conj |
at,during |
R1486 |
T2227 |
T2228 |
det |
the,back |
R1487 |
T2228 |
T2226 |
pobj |
back,at |
R1488 |
T2229 |
T2230 |
punct |
(,2A |
R1489 |
T2230 |
T2171 |
parataxis |
2A,displayed |
R1490 |
T2231 |
T2230 |
compound |
Figure,2A |
R1491 |
T2232 |
T2230 |
punct |
),2A |
R1492 |
T2233 |
T2171 |
punct |
.,displayed |
R1493 |
T2235 |
T2236 |
compound |
Scanning,microscope |
R1494 |
T2236 |
T2238 |
compound |
microscope,analysis |
R1495 |
T2237 |
T2236 |
compound |
electron,microscope |
R1496 |
T2238 |
T2239 |
nsubj |
analysis,revealed |
R1497 |
T2240 |
T2238 |
prep |
of,analysis |
R1498 |
T2241 |
T2242 |
compound |
XpdTTD,†XPCS |
R1499 |
T2242 |
T2244 |
compound |
†XPCS,hair |
R1500 |
T2243 |
T2242 |
punct |
/,†XPCS |
R1501 |
T2244 |
T2240 |
pobj |
hair,of |
R1502 |
T2245 |
T2246 |
det |
an,appearance |
R1503 |
T2246 |
T2239 |
dobj |
appearance,revealed |
R1504 |
T2247 |
T2248 |
advmod |
almost,normal |
R1505 |
T2248 |
T2246 |
amod |
normal,appearance |
R1506 |
T2249 |
T2246 |
punct |
", ",appearance |
R1507 |
T2250 |
T2246 |
prep |
with,appearance |
R1508 |
T2251 |
T2252 |
npadvmod |
TTD,like |
R1509 |
T2252 |
T2254 |
amod |
like,features |
R1510 |
T2253 |
T2252 |
punct |
-,like |
R1511 |
T2254 |
T2250 |
pobj |
features,with |
R1512 |
T2255 |
T2256 |
amod |
such,as |
R1513 |
T2256 |
T2254 |
prep |
as,features |
R1514 |
T2257 |
T2258 |
amod |
broken,hairs |
R1515 |
T2258 |
T2256 |
pobj |
hairs,as |
R1516 |
T2259 |
T2254 |
acl |
found,features |
R1517 |
T2260 |
T2261 |
advmod |
only,at |
R1518 |
T2261 |
T2259 |
prep |
at,found |
R1519 |
T2262 |
T2263 |
advmod |
very,low |
R1520 |
T2263 |
T2264 |
amod |
low,frequency |
R1521 |
T2264 |
T2261 |
pobj |
frequency,at |
R1522 |
T2265 |
T2266 |
punct |
(,data |
R1523 |
T2266 |
T2239 |
parataxis |
data,revealed |
R1524 |
T2267 |
T2266 |
amod |
unpublished,data |
R1525 |
T2268 |
T2266 |
punct |
),data |
R1526 |
T2269 |
T2239 |
punct |
.,revealed |
R1527 |
T2271 |
T2272 |
compound |
Amino,acid |
R1528 |
T2272 |
T2273 |
compound |
acid,analysis |
R1529 |
T2273 |
T2274 |
nsubj |
analysis,confirmed |
R1530 |
T2275 |
T2276 |
mark |
that,were |
R1531 |
T2276 |
T2274 |
ccomp |
were,confirmed |
R1532 |
T2277 |
T2278 |
compound |
cysteine,levels |
R1533 |
T2278 |
T2276 |
nsubj |
levels,were |
R1534 |
T2279 |
T2278 |
prep |
in,levels |
R1535 |
T2280 |
T2281 |
det |
the,hair |
R1536 |
T2281 |
T2279 |
pobj |
hair,in |
R1537 |
T2282 |
T2281 |
prep |
of,hair |
R1538 |
T2283 |
T2284 |
det |
the,mice |
R1539 |
T2284 |
T2282 |
pobj |
mice,of |
R1540 |
T2285 |
T2286 |
compound |
XpdTTD,†XPCS |
R1541 |
T2286 |
T2284 |
compound |
†XPCS,mice |
R1542 |
T2287 |
T2286 |
punct |
/,†XPCS |
R1543 |
T2288 |
T2289 |
advmod |
significantly,higher |
R1544 |
T2289 |
T2276 |
acomp |
higher,were |
R1545 |
T2290 |
T2289 |
prep |
than,higher |
R1546 |
T2291 |
T2290 |
prep |
in,than |
R1547 |
T2292 |
T2293 |
compound |
XpdTTD,TTD |
R1548 |
T2293 |
T2295 |
compound |
TTD,animals |
R1549 |
T2294 |
T2293 |
punct |
/,TTD |
R1550 |
T2295 |
T2291 |
pobj |
animals,in |
R1551 |
T2296 |
T2276 |
punct |
", ",were |
R1552 |
T2297 |
T2276 |
cc |
but,were |
R1553 |
T2298 |
T2276 |
conj |
remained,were |
R1554 |
T2299 |
T2298 |
prep |
below,remained |
R1555 |
T2300 |
T2301 |
det |
the,level |
R1557 |
T2302 |
T2301 |
compound |
wt,level |
R1625 |
T2374 |
T2372 |
cc |
and,layer |
R1626 |
T2375 |
T2376 |
amod |
sebacious,gland |
R1627 |
T2376 |
T2377 |
compound |
gland,hyperplasia |
R1628 |
T2377 |
T2372 |
conj |
hyperplasia,layer |
R1629 |
T2378 |
T2379 |
punct |
(,causing |
R1630 |
T2379 |
T2377 |
parataxis |
causing,hyperplasia |
R1631 |
T2380 |
T2381 |
amod |
greasy,appearance |
R1632 |
T2381 |
T2379 |
dobj |
appearance,causing |
R1633 |
T2382 |
T2381 |
prep |
of,appearance |
R1634 |
T2383 |
T2384 |
det |
the,hair |
R1635 |
T2384 |
T2382 |
pobj |
hair,of |
R1636 |
T2385 |
T2379 |
punct |
),causing |
R1637 |
T2386 |
T2342 |
punct |
", ",were |
R1638 |
T2387 |
T2342 |
acomp |
absent,were |
R1639 |
T2388 |
T2342 |
prep |
in,were |
R1640 |
T2389 |
T2390 |
det |
the,skin |
R1641 |
T2390 |
T2388 |
pobj |
skin,in |
R1642 |
T2391 |
T2390 |
prep |
of,skin |
R1643 |
T2392 |
T2393 |
compound |
XpdTTD,†XPCS |
R1644 |
T2393 |
T2395 |
compound |
†XPCS,mice |
R1645 |
T2394 |
T2393 |
punct |
/,†XPCS |
R1646 |
T2395 |
T2391 |
pobj |
mice,of |
R1647 |
T2396 |
T2342 |
punct |
", ",were |
R1648 |
T2397 |
T2398 |
mark |
as,established |
R1649 |
T2398 |
T2342 |
advcl |
established,were |
R1650 |
T2399 |
T2398 |
prep |
by,established |
R1651 |
T2400 |
T2401 |
amod |
blind,examination |
R1652 |
T2401 |
T2399 |
pobj |
examination,by |
R1653 |
T2402 |
T2401 |
amod |
microscopic,examination |
R1654 |
T2403 |
T2401 |
prep |
of,examination |
R1655 |
T2404 |
T2405 |
compound |
skin,sections |
R1656 |
T2405 |
T2403 |
pobj |
sections,of |
R1657 |
T2406 |
T2407 |
punct |
(,2B |
R1658 |
T2407 |
T2342 |
parataxis |
2B,were |
R1659 |
T2408 |
T2407 |
compound |
Figure,2B |
R1660 |
T2409 |
T2407 |
punct |
),2B |
R1661 |
T2410 |
T2342 |
punct |
.,were |
R1662 |
T2412 |
T2413 |
advmod |
Furthermore,rescued |
R1663 |
T2414 |
T2413 |
punct |
", ",rescued |
R1664 |
T2415 |
T2413 |
nsubjpass |
anaemia,rescued |
R1665 |
T2416 |
T2415 |
cc |
and,anaemia |
R1666 |
T2417 |
T2418 |
amod |
developmental,delay |
R1667 |
T2418 |
T2415 |
conj |
delay,anaemia |
R1668 |
T2419 |
T2415 |
amod |
present,anaemia |
R1669 |
T2420 |
T2419 |
prep |
in,present |
R1670 |
T2421 |
T2420 |
pobj |
patients,in |
R1671 |
T2422 |
T2421 |
prep |
with,patients |
R1672 |
T2423 |
T2422 |
pobj |
TTD,with |
R1673 |
T2424 |
T2425 |
punct |
[,24 |
R1674 |
T2425 |
T2421 |
parataxis |
24,patients |
R1675 |
T2426 |
T2425 |
punct |
],24 |
R1676 |
T2427 |
T2420 |
cc |
and,in |
R1677 |
T2428 |
T2420 |
conj |
in,in |
R1678 |
T2429 |
T2430 |
compound |
XpdTTD,TTD |
R1679 |
T2430 |
T2432 |
compound |
TTD,mice |
R1680 |
T2431 |
T2430 |
punct |
/,TTD |
R1681 |
T2432 |
T2428 |
pobj |
mice,in |
R1682 |
T2433 |
T2434 |
punct |
[,15 |
R1683 |
T2434 |
T2432 |
parataxis |
15,mice |
R1684 |
T2435 |
T2434 |
punct |
],15 |
R1685 |
T2436 |
T2413 |
auxpass |
were,rescued |
R1686 |
T2437 |
T2413 |
advmod |
both,rescued |
R1687 |
T2438 |
T2413 |
advmod |
partially,rescued |
R1688 |
T2439 |
T2413 |
prep |
in,rescued |
R1689 |
T2440 |
T2441 |
amod |
compound,mice |
R1690 |
T2441 |
T2439 |
pobj |
mice,in |
R1691 |
T2442 |
T2441 |
amod |
heterozygous,mice |
R1692 |
T2443 |
T2444 |
compound |
XpdTTD,†XPCS |
R1693 |
T2444 |
T2441 |
compound |
†XPCS,mice |
R1694 |
T2445 |
T2444 |
punct |
/,†XPCS |
R1695 |
T2446 |
T2447 |
punct |
(,2D |
R1696 |
T2447 |
T2413 |
parataxis |
2D,rescued |
R1697 |
T2448 |
T2447 |
compound |
Figure,2D |
R1698 |
T2449 |
T2447 |
cc |
and,2D |
R1699 |
T2450 |
T2447 |
conj |
2E,2D |
R1700 |
T2451 |
T2447 |
punct |
),2D |
R1701 |
T2452 |
T2413 |
punct |
.,rescued |
R1702 |
T2573 |
T2572 |
prep |
of,Rescue |
R1703 |
T2574 |
T2575 |
amod |
"Progeria in Trichothiodystrophy by Homozygous Lethal Xpd Alleles
Compound Heterozygosity at theXpd Locus
Abstract
Although compound heterozygosity, or the presence of two different mutant alleles of the same gene, is common in human recessive disease, its potential to impact disease outcome has not been well documented. This is most likely because of the inherent difficulty in distinguishing specific biallelic effects from differences in environment or genetic background. We addressed the potential of different recessive alleles to contribute to the enigmatic pleiotropy associated with XPD recessive disorders in compound heterozygous mouse models. Alterations in this essential helicase, with functions in both DNA repair and basal transcription, result in diverse pathologies ranging from elevated UV sensitivity and cancer predisposition to accelerated segmental progeria. We report a variety of biallelic effects on organismal phenotype attributable to combinations of recessive Xpd alleles, including the following: (i) the ability of homozygous lethal Xpd alleles to ameliorate a variety of disease symptoms when their essential basal transcription function is supplied by a different disease-causing allele, (ii) differential developmental and tissue-specific functions of distinct Xpd allele products, and (iii) interallelic complementation, a phenomenon rarely reported at clinically relevant loci in mammals. Our data suggest a re-evaluation of the contribution of “null” alleles to XPD disorders and highlight the potential of combinations of recessive alleles to affect both normal and pathological phenotypic plasticity in mammals.
Effects of mutations in Xpd were investigated in mice. Compound heterozygotes of otherwise homozygous lethal alleles demonstrated interallelic complementation and partial phenotypic rescue of XPD-related disease symptoms.
Introduction
Interallelic complementation is defined as the ability of two differentially mutated alleles to function better together than either can on its own. Despite its near universality in lower organisms [1], its potential to contribute to clinical heterogeneity in human disease is seldom considered. Evidence of interallelic complementation at clinically relevant loci is limited to biochemical and cell-based studies of a handful of metabolic disorders with defects in enzymes including propinyl-CoA carboxylase [2], argininosuccinate lyase [3], galactose-1-phosphate uridylyltransferase [4], and methylmalonyl CoA mutase [5].
Compound heterozygotes are individuals carrying two different mutant alleles of the same gene. In the absence of a dominant (wild-type [wt]) allele, genetic interactions between recessive alleles (referred to here as “biallelic” effects) could result in different phenotypic outcomes including interallelic complementation. Although amelioration of disease symptoms by interallelic complementation would create an ascertainment bias in the clinic, the lack of evidence concerning interallelic complementation or other biallelic effects in human disease is likely caused by the difficulty in distinguishing such effects from environment and genetic background.
XPD encodes one of the two helicase components of basal transcription/DNA repair factor IIH (TFIIH), a ten-subunit, multifunctional complex that is essential for multiple processes, including basal transcription initiation and DNA damage repair via the nucleotide excision repair (NER) pathway [6,7]. Alterations in XPD resulting in defective TFIIH function are associated with UV-sensitive, multisystem disorders including xeroderma pigmentosum (XP), XP combined with Cockayne syndrome (CS), and trichothiodystrophy (TTD) [8–10]. XP is marked by sun-induced pigmentation anomalies and a greater than 1,000-fold elevation in skin cancer risk. Severe cases can also present with growth retardation and primary neurodegeneration [11]. CS and TTD, on the other hand, are segmental progeroid disorders characterised by progressive post-natal growth failure and primary demyelination resulting in severe neurodysfunction, but without a clear cancer predisposition [12–15]. Patients with TTD additionally display hallmark sulphur-deficient brittle hair and nails and scaling skin [13], resulting from a basal transcription defect in specific cell types [16,17]. A related disorder with the cancer predisposition of XP combined with the neurodevelopmental complications of CS (XPCS), although rare, has also been described [18].
Many XPD mutations are associated with an exclusive disease phenotype (e.g., XPDR722W with TTD and XPDR683W with XP) and are thus viewed as causative of the corresponding syndromes. Alleles not associated exclusively with one disorder are considered “likely null” alleles [19,20]. Some of these alleles fail to support viability in a haploid Schizosaccharomyces pombe yeast strain with a null mutation in the XPD homologue rad15 and are thus considered devoid of significant biological activity [19]. This classification of alleles as either causative or null currently defines what we refer to as a “monoallelic” paradigm of XPD disease. However, the identification in recent years of XP complementation group D patients with atypical disease presentation, including symptoms of both XP and TTD [8], casts doubt on the ability of such a monoallelic paradigm to explain clinical heterogeneity in compound heterozygotes.
Previously, we generated a TTD mouse model (XPDR722W) that phenocopies the human syndrome [15,21]. Here we report the generation of additional mutant Xpd alleles that fail to support viability on their own but nevertheless ameliorate TTD-associated premature segmental ageing, cutaneous features, cellular DNA repair capacity, and UV survival when present in a compound heterozygote state.
Results
Generation of Xpd Compound Heterozygotes
We generated an Xpd knock-in allele with a point mutation encoding a single amino acid change (XPDG602D) found in the XPCS patient XPCS2 (Figure 1A–1C). mRNA expression from the targeted allele could be detected in embryonic stem cells by RT-PCR (Figure 1D), although expression was reduced approximately 5-fold relative to wt mRNA transcript levels as determined by Northern blotting of RNA from the testis of heterozygous animals (Figure 1E). Because patient XPCS2 was a hemizygote with mutant XPD protein (XPDG602D) expressed from a single allele, the corresponding mutation was expected to be viable in the homozygous state. However, homozygous mutant mice were not observed, neither amongst live births nor embryonic day 13.5 (E13.5) or E3.5 embryos (Table 1). The corresponding hypomorphic, mutant allele was thus designated as homozygous lethal (†XPCS). Homozygous lethality of the XPCS allele is likely due to reduced levels of expression of this essential protein as a result of gene targeting (Figure 1A) rather than to the mutation itself. Xpd ablation (XpdKO /KO ) is similarly incompatible with life beyond the earliest stages of embryogenesis [22]. Consistent with this interpretation, a different targeted Xpd mutation encoding XPDR683W, which is associated with XP in the homozygous state in humans, was similarly underexpressed and lethal in the homozygous state (designated as †XP allele) (Figure 1A–1C; Table 1; unpublished data). Also, a different targeting approach leading to the use of the native 3′UTR and removal of the neo gene resulted in normalisation of XpdXPCS mRNA levels and viable homozygous XpdXPCS/XPCS (XPDG602D/G602D) animals [23].
Figure 1 Targeting of the Mouse Xpd Gene
(A) Schematic representation of the genomic structure and partial restriction map of the wt and targeted mouse Xpd loci. For the wt Xpd allele, shaded boxes represent coding regions of exons 12 and 19–23; the 3′UTR is represented by an open box. TGA indicates the translational stop codon; PolyA indicates the polyadenylation signal. For the XpdTTD targeted allele, the 194–base pair (bp) human XPD cDNA fragment fused to exon 22 is indicated as a striped box including the TTD (R722W) mutation indicated by a vertical arrow. Chicken β-globin exons 2 and 3 including the 3′UTR are indicated as black boxes with corresponding Roman numerals followed by the β-globin polyadenylation signal (PolyA*). For the Xpd†XP and Xpd†XPCS targeted alleles, vertical arrows indicate XPCS (G602D-encoding) and XP (R683W-encoding) mutations in exons 19 and 22, respectively. The unique 3′ probe located outside the targeting construct is marked by a thick black line. Restriction sites: B, BamHI; C, ClaI; E, EcoRI; H, HindIII; Hp, HpaI; Sf, SfiI.
(B) Southern blot analysis of EcoRI-digested genomic DNA from wt, Xpd†XPCS/wt, and Xpd†XP/wt recombinant embryonic stem cell clones hybridised with the 3′ probe depicted in (A). The wt allele yields a 6.5-kilobase (kb) fragment, whereas both targeted Xpd†XP and Xpd†XPCS alleles yield a 5.1-kb fragment.
(C) Genotyping of wt and targeted alleles by PCR using primers F2, R1, and mR as indicated in (A) yields fragments of 399 bp and 468 bp, respectively.
(D) RT-PCR detection of mRNA expression originating from the targeted †XP and †XPCS alleles in embryonic stem cell clones using primers F1 (hybridising outside the targeting construct) and mR as indicated in (A) results in a 1,416-bp fragment.
(E) Northern blot analysis of total RNA isolated from testis of homozygous wt and XpdTTD/TTD, heterozygous Xpd†XPCS/wt and XpdTTD/wt, and compound heterozygous Xpd†XPCS/TTD mice as indicated. Hybridisation with a 1.4-kb mouse Xpd cDNA probe detects mRNAs of 4, 3.3, and 2.7 kb from wt, Xpd†XPCS, and XpdTTD alleles, respectively. An ethidium bromide (EtBr)–stained gel showing the amount of total RNA loaded is shown below.
Table 1 Frequency of Xpd†XP/†XP, Xpd†XPCS/†XPCS, and Compound Heterozygous Xpd†XP/†XPCS Embryos and Offspring
“Null” Allele Can Alleviate Developmental Delay, Skin, and Hair Features of TTD
To test the potential of a homozygous lethal “null” allele to nevertheless contribute to organismal phenotype, we combined an Xpd†XPCS allele with a viable XpdTTD allele by crossing the corresponding heterozygous animals. Similar to hemizygous TTD mice carrying one true Xpd knockout allele (XpdTTD/KO), compound heterozygous XpdTTD/†XPCS mice were born at the expected Mendelian frequencies. Expression from the Xpd†XPCS allele was also reduced in the testis of compound heterozygous animals, whereas expression from the XpdTTD allele was increased relative to wt by ~5-fold (Figure 1E). Because of a lack of available antibodies and the inability to distinguish amongst various mutant forms of XPD differing only by single amino acid substitutions, we were unable to ascertain the relative amount of XPD protein from the different alleles.
Despite reduced levels of mRNA expression, the homozygous lethal Xpd†XPCS allele ameliorated multiple XpdTTD-associated disease symptoms in compound heterozygous XpdTTD/†XPCS animals including the hallmark brittle hair and cutaneous features fully penetrant in homo- and hemizygous TTD mice (Figure 2A–2C). In marked contrast to XpdTTD/TTD (and XpdTTD/KO) mice, which display complete hair loss in the first hair cycle and partial hair loss in subsequent cycles throughout their lives [21], compound heterozygous XpdTTD/†XPCS mice displayed some hair loss only during the first hair cycle and only locally at the back (Figure 2A). Scanning electron microscope analysis of XpdTTD/†XPCS hair revealed an almost normal appearance, with TTD-like features such as broken hairs found only at very low frequency (unpublished data). Amino acid analysis confirmed that cysteine levels in the hair of the XpdTTD/†XPCS mice were significantly higher than in XpdTTD/TTD animals, but remained below the wt level (Figure 2C). TTD hemizygotes (XpdTTD/KO) do not display significant differences in cutaneous features and longevity relative to homozygous XpdTTD/TTD mice [21].
Figure 2 Partial Rescue of TTD Cutaneous, Blood, and Developmental Phenotypes in Compound Heterozygous XpdTTD/†XPCS Mice
(A) Photographs of 5-mo-old homozygous XpdTTD/TTD, compound heterozygous XpdTTD/†XPCS, and wt mice. Insets: images of first-round hair loss.
(B) Histological analysis of the skin of XpdTTD/TTD, XpdTTD/†XPCS, and wt mice. TTD-associated acanthosis (thicker epidermis, indicated by solid vertical line), pronounced granular layer (indicated by arrows), and sebacious gland hyperplasia (indicated by dotted vertical line) were absent in the epidermis of XpdTTD/†XPCS and wt mice. Magnification 400×.
(C) Cysteine content of hair from wt, XpdTTD/TTD, and XpdTTD/†XPCS mice. The p-value indicates significant differences between mutants and wt, as well as between XpdTTD/TTD and XpdTTD/†XPCS mice. Error bars indicate standard error of the mean (SEM).
(D) Hematocrit values from blood of XpdTTD/TTD and XpdTTD/†XPCS mice. The p-values indicate the significance of the difference relative to wt. Error bars indicate SEM.
(E) Body weights of developing XpdTTD/TTD and XpdTTD/†XPCS mice after weaning plotted as a percentage of the weight of age-matched control wt and heterozygote (hz) littermates (set at 100%). Error bars indicate SEM. Other prominent TTD features in the epidermis, including acanthosis (thickening of the layer of the nucleated cells), hyperkeratosis (prominent thickening of the cornified layer), and pronounced granular layer and sebacious gland hyperplasia (causing greasy appearance of the hair), were absent in the skin of XpdTTD/†XPCS mice, as established by blind microscopic examination of skin sections (Figure 2B). Furthermore, anaemia and developmental delay present in patients with TTD [24] and in XpdTTD/TTD mice [15] were both partially rescued in compound heterozygous XpdTTD/†XPCS mice (Figure 2D and 2E).
Rescue of Progeroid",Features |
R1704 |
T2575 |
T2573 |
pobj |
Features,of |
R1705 |
T2576 |
T2572 |
prep |
in,Rescue |
R1706 |
T2577 |
T2578 |
compound |
TTD,Mice |
R1707 |
T2578 |
T2576 |
pobj |
Mice,in |
R1708 |
T2579 |
T2572 |
prep |
by,Rescue |
R1709 |
T2580 |
T2581 |
amod |
Homozygous,Alleles |
R1710 |
T2581 |
T2579 |
pobj |
Alleles,by |
R1711 |
T2582 |
T2581 |
amod |
Lethal,Alleles |
R1712 |
T2583 |
T2581 |
compound |
Xpd,Alleles |
R1713 |
T2585 |
T2586 |
mark |
Because,share |
R1714 |
T2586 |
T2605 |
advcl |
share,addressed |
R1715 |
T2587 |
T2586 |
nsubj |
patients,share |
R1716 |
T2588 |
T2587 |
prep |
with,patients |
R1717 |
T2589 |
T2588 |
pobj |
TTD,with |
R1718 |
T2590 |
T2589 |
punct |
", ",TTD |
R1719 |
T2591 |
T2589 |
conj |
XPCS,TTD |
R1720 |
T2592 |
T2591 |
punct |
", ",XPCS |
R1721 |
T2593 |
T2591 |
cc |
and,XPCS |
R1722 |
T2594 |
T2591 |
conj |
CS,XPCS |
R1723 |
T2595 |
T2589 |
punct |
(,TTD |
R1724 |
T2596 |
T2589 |
cc |
but,TTD |
R1725 |
T2597 |
T2596 |
neg |
not,but |
R1726 |
T2598 |
T2589 |
conj |
XP,TTD |
R1727 |
T2599 |
T2587 |
punct |
),patients |
R1728 |
T2600 |
T2587 |
cc |
and,patients |
R1729 |
T2601 |
T2602 |
det |
the,models |
R1730 |
T2602 |
T2587 |
conj |
models,patients |
R1731 |
T2603 |
T2602 |
amod |
corresponding,models |
R1732 |
T2604 |
T2602 |
compound |
mouse,models |
R1733 |
T2606 |
T2607 |
amod |
similar,symptoms |
R1734 |
T2607 |
T2586 |
dobj |
symptoms,share |
R1735 |
T2608 |
T2607 |
amod |
accelerated,symptoms |
R1736 |
T2609 |
T2607 |
compound |
progeroid,symptoms |
R1737 |
T2610 |
T2611 |
punct |
[,23 |
R1738 |
T2611 |
T2586 |
parataxis |
23,share |
R1739 |
T2612 |
T2611 |
nummod |
12,23 |
R1740 |
T2613 |
T2611 |
punct |
",",23 |
R1741 |
T2614 |
T2611 |
nummod |
13,23 |
R1742 |
T2615 |
T2611 |
punct |
",",23 |
R1743 |
T2616 |
T2611 |
nummod |
15,23 |
R1744 |
T2617 |
T2611 |
punct |
",",23 |
R1745 |
T2618 |
T2611 |
punct |
],23 |
R1746 |
T2619 |
T2605 |
punct |
", ",addressed |
R1747 |
T2620 |
T2605 |
nsubj |
we,addressed |
R1748 |
T2621 |
T2605 |
advmod |
next,addressed |
R1749 |
T2622 |
T2623 |
amod |
ageing,related |
R1750 |
T2623 |
T2625 |
amod |
related,parameters |
R1751 |
T2624 |
T2623 |
punct |
-,related |
R1752 |
T2625 |
T2605 |
dobj |
parameters,addressed |
R1753 |
T2626 |
T2625 |
prep |
in,parameters |
R1754 |
T2627 |
T2628 |
amod |
compound,mice |
R1755 |
T2628 |
T2626 |
pobj |
mice,in |
R1756 |
T2629 |
T2628 |
amod |
heterozygous,mice |
R1757 |
T2630 |
T2631 |
punct |
(,Figure |
R1758 |
T2631 |
T2605 |
parataxis |
Figure,addressed |
R1759 |
T2632 |
T2631 |
nummod |
3,Figure |
R1760 |
T2633 |
T2631 |
punct |
),Figure |
R1761 |
T2634 |
T2605 |
punct |
.,addressed |
R1762 |
T2636 |
T2637 |
mark |
Whereas,show |
R1763 |
T2637 |
T2642 |
advcl |
show,were |
R1764 |
T2638 |
T2639 |
compound |
XpdTTD,TTD |
R1765 |
T2639 |
T2641 |
compound |
TTD,animals |
R1766 |
T2640 |
T2639 |
punct |
/,TTD |
R1767 |
T2641 |
T2637 |
nsubj |
animals,show |
R1768 |
T2643 |
T2644 |
amod |
reduced,density |
R1769 |
T2644 |
T2637 |
dobj |
density,show |
R1770 |
T2645 |
T2646 |
compound |
bone,mineral |
R1771 |
T2646 |
T2644 |
compound |
mineral,density |
R1772 |
T2647 |
T2637 |
prep |
as,show |
R1773 |
T2648 |
T2649 |
det |
an,indication |
R1774 |
T2649 |
T2647 |
pobj |
indication,as |
R1775 |
T2650 |
T2649 |
prep |
of,indication |
R1776 |
T2651 |
T2652 |
det |
the,onset |
R1777 |
T2652 |
T2650 |
pobj |
onset,of |
R1778 |
T2653 |
T2652 |
amod |
early,onset |
R1779 |
T2654 |
T2652 |
prep |
of,onset |
R1780 |
T2655 |
T2654 |
pobj |
osteoporosis,of |
R1781 |
T2656 |
T2652 |
prep |
before,onset |
R1782 |
T2657 |
T2658 |
punct |
~,14 |
R1783 |
T2658 |
T2659 |
nummod |
14,mo |
R1784 |
T2659 |
T2656 |
pobj |
mo,before |
R1785 |
T2660 |
T2659 |
prep |
of,mo |
R1786 |
T2661 |
T2660 |
pobj |
age,of |
R1787 |
T2662 |
T2663 |
punct |
[,15 |
R1788 |
T2663 |
T2637 |
parataxis |
15,show |
R1789 |
T2664 |
T2663 |
punct |
],15 |
R1790 |
T2665 |
T2642 |
punct |
", ",were |
R1791 |
T2666 |
T2667 |
compound |
tail,vertebrae |
R1792 |
T2667 |
T2642 |
nsubj |
vertebrae,were |
R1793 |
T2668 |
T2667 |
prep |
from,vertebrae |
R1794 |
T2669 |
T2670 |
nmod |
compound,mice |
R1795 |
T2670 |
T2668 |
pobj |
mice,from |
R1796 |
T2671 |
T2670 |
amod |
heterozygous,mice |
R1797 |
T2672 |
T2673 |
compound |
XpdTTD,†XPCS |
R1798 |
T2673 |
T2670 |
compound |
†XPCS,mice |
R1799 |
T2674 |
T2673 |
punct |
/,†XPCS |
R1800 |
T2675 |
T2642 |
acomp |
comparable,were |
R1801 |
T2676 |
T2675 |
prep |
to,comparable |
R1802 |
T2677 |
T2676 |
pobj |
wt,to |
R1803 |
T2678 |
T2679 |
advmod |
even,at |
R1804 |
T2679 |
T2642 |
prep |
at,were |
R1805 |
T2680 |
T2681 |
nummod |
20,mo |
R1806 |
T2681 |
T2679 |
pobj |
mo,at |
R1807 |
T2682 |
T2681 |
prep |
of,mo |
R1808 |
T2683 |
T2682 |
pobj |
age,of |
R1809 |
T2684 |
T2685 |
punct |
(,3B |
R1810 |
T2685 |
T2642 |
parataxis |
3B,were |
R1811 |
T2686 |
T2685 |
compound |
Figure,3B |
R1812 |
T2687 |
T2685 |
cc |
and,3B |
R1813 |
T2688 |
T2685 |
conj |
3C,3B |
R1814 |
T2689 |
T2685 |
punct |
),3B |
R1815 |
T2690 |
T2642 |
punct |
.,were |
R1816 |
T2692 |
T2693 |
advmod |
Furthermore,3B |
R1817 |
T2694 |
T2693 |
punct |
", ",3B |
R1818 |
T2695 |
T2696 |
mark |
whereas,developed |
R1819 |
T2696 |
T2693 |
advcl |
developed,3B |
R1820 |
T2697 |
T2698 |
compound |
XpdTTD,TTD |
R1821 |
T2698 |
T2700 |
compound |
TTD,mice |
R1822 |
T2699 |
T2698 |
punct |
/,TTD |
R1823 |
T2700 |
T2696 |
nsubj |
mice,developed |
R1824 |
T2701 |
T2696 |
dobj |
kyphosis,developed |
R1825 |
T2702 |
T2696 |
advmod |
earlier,developed |
R1826 |
T2703 |
T2702 |
prep |
than,earlier |
R1827 |
T2704 |
T2705 |
compound |
wt,animals |
R1828 |
T2705 |
T2703 |
pobj |
animals,than |
R1829 |
T2706 |
T2707 |
punct |
(,onset |
R1830 |
T2707 |
T2702 |
parataxis |
onset,earlier |
R1831 |
T2708 |
T2709 |
punct |
~,3 |
R1832 |
T2709 |
T2710 |
nummod |
3,mo |
R1833 |
T2710 |
T2707 |
npadvmod |
mo,onset |
R1834 |
T2711 |
T2710 |
cc |
versus,mo |
R1835 |
T2712 |
T2713 |
quantmod |
12,20 |
R1836 |
T2713 |
T2715 |
nummod |
20,mo |
R1837 |
T2714 |
T2713 |
punct |
–,20 |
R1838 |
T2715 |
T2710 |
conj |
mo,mo |
R1839 |
T2716 |
T2707 |
punct |
),onset |
R1840 |
T2717 |
T2693 |
punct |
", ",3B |
R1841 |
T2718 |
T2719 |
amod |
compound,mice |
R1842 |
T2719 |
T2693 |
nsubj |
mice,3B |
R1843 |
T2720 |
T2719 |
amod |
heterozygous,mice |
R1844 |
T2721 |
T2722 |
compound |
XpdTTD,†XPCS |
R1845 |
T2722 |
T2719 |
compound |
†XPCS,mice |
R1846 |
T2723 |
T2722 |
punct |
/,†XPCS |
R1847 |
T2724 |
T2693 |
aux |
did,3B |
R1848 |
T2725 |
T2693 |
neg |
not,3B |
R1849 |
T2726 |
T2693 |
punct |
(,3B |
R1850 |
T2727 |
T2693 |
compound |
Figure,3B |
R1851 |
T2728 |
T2693 |
punct |
),3B |
R1852 |
T2729 |
T2693 |
punct |
.,3B |
R1853 |
T2731 |
T2732 |
amod |
Overall,appearance |
R1854 |
T2732 |
T2733 |
nsubj |
appearance,revealed |
R1855 |
T2734 |
T2732 |
cc |
and,appearance |
R1856 |
T2735 |
T2736 |
compound |
body,weight |
R1857 |
T2736 |
T2737 |
compound |
weight,curves |
R1858 |
T2737 |
T2732 |
conj |
curves,appearance |
R1859 |
T2738 |
T2739 |
mark |
that,rescued |
R1891 |
T2772 |
T2771 |
punct |
", ",extended |
R1892 |
T2773 |
T2774 |
det |
the,span |
R1893 |
T2774 |
T2771 |
nsubjpass |
span,extended |
R1894 |
T2775 |
T2774 |
compound |
life,span |
R1895 |
T2776 |
T2774 |
prep |
of,span |
R1896 |
T2777 |
T2778 |
amod |
compound,heterozygotes |
R1897 |
T2778 |
T2776 |
pobj |
heterozygotes,of |
R1898 |
T2779 |
T2771 |
auxpass |
was,extended |
R1899 |
T2780 |
T2771 |
advcl |
relative,extended |
R1900 |
T2781 |
T2780 |
prep |
to,relative |
R1901 |
T2782 |
T2783 |
compound |
XpdTTD,TTD |
R1902 |
T2783 |
T2785 |
compound |
TTD,mice |
R1903 |
T2784 |
T2783 |
punct |
/,TTD |
R1904 |
T2785 |
T2781 |
pobj |
mice,to |
R1905 |
T2786 |
T2787 |
punct |
(,Table |
R1906 |
T2787 |
T2771 |
parataxis |
Table,extended |
R1907 |
T2788 |
T2787 |
nummod |
2,Table |
R1908 |
T2789 |
T2787 |
punct |
),Table |
R1909 |
T2790 |
T2771 |
punct |
.,extended |
R1923 |
T2806 |
T2807 |
aux |
to,ameliorate |
R1924 |
T2807 |
T2805 |
acl |
ameliorate,ability |
R1925 |
T2808 |
T2807 |
dobj |
symptoms,ameliorate |
R1926 |
T2809 |
T2808 |
acl |
associated,symptoms |
R1927 |
T2810 |
T2809 |
prep |
with,associated |
R1928 |
T2811 |
T2812 |
det |
the,allele |
R1929 |
T2812 |
T2810 |
pobj |
allele,with |
R1930 |
T2813 |
T2812 |
compound |
XpdTTD,allele |
R1931 |
T2814 |
T2794 |
punct |
", ",generated |
R1932 |
T2815 |
T2794 |
nsubj |
we,generated |
R1933 |
T2816 |
T2817 |
nmod |
compound,mice |
R1934 |
T2817 |
T2794 |
dobj |
mice,generated |
R1935 |
T2818 |
T2817 |
amod |
heterozygous,mice |
R1936 |
T2819 |
T2820 |
compound |
XpdTTD,†XP |
R1937 |
T2820 |
T2817 |
compound |
†XP,mice |
R1938 |
T2821 |
T2820 |
punct |
/,†XP |
R1939 |
T2822 |
T2794 |
prep |
by,generated |
R1940 |
T2823 |
T2822 |
pcomp |
crossing,by |
R1941 |
T2824 |
T2825 |
det |
the,animals |
R1942 |
T2825 |
T2823 |
dobj |
animals,crossing |
R1943 |
T2826 |
T2825 |
amod |
corresponding,animals |
R1944 |
T2827 |
T2825 |
amod |
heterozygous,animals |
R1945 |
T2828 |
T2794 |
punct |
.,generated |
R1946 |
T2830 |
T2831 |
advcl |
Similar,rescued |
R1947 |
T2832 |
T2830 |
prep |
to,Similar |
R1948 |
T2833 |
T2834 |
det |
the,allele |
R1949 |
T2834 |
T2832 |
pobj |
allele,to |
R1950 |
T2835 |
T2834 |
compound |
Xpd †XPCS,allele |
R1951 |
T2836 |
T2831 |
punct |
", ",rescued |
R1952 |
T2837 |
T2838 |
det |
the,allele |
R1953 |
T2838 |
T2831 |
nsubj |
allele,rescued |
R1954 |
T2839 |
T2838 |
amod |
homozygous,allele |
R1955 |
T2840 |
T2838 |
amod |
lethal,allele |
R1956 |
T2841 |
T2838 |
compound |
Xpd †XP,allele |
R1957 |
T2842 |
T2843 |
amod |
cutaneous,symptoms |
R1958 |
T2843 |
T2831 |
dobj |
symptoms,rescued |
R1959 |
T2844 |
T2843 |
prep |
including,symptoms |
R1960 |
T2845 |
T2846 |
compound |
hair,loss |
R1961 |
T2846 |
T2844 |
pobj |
loss,including |
R1962 |
T2847 |
T2848 |
punct |
(,data |
R1963 |
T2848 |
T2846 |
parataxis |
data,loss |
R1964 |
T2849 |
T2848 |
prep |
except,data |
R1965 |
T2850 |
T2849 |
pcomp |
locally,except |
R1966 |
T2851 |
T2850 |
prep |
during,locally |
R1967 |
T2852 |
T2853 |
det |
the,round |
R1968 |
T2853 |
T2851 |
pobj |
round,during |
R1969 |
T2854 |
T2853 |
amod |
first,round |
R1970 |
T2855 |
T2848 |
punct |
;,data |
R1971 |
T2856 |
T2848 |
amod |
unpublished,data |
R1972 |
T2857 |
T2848 |
punct |
),data |
R1973 |
T2858 |
T2846 |
punct |
", ",loss |
R1974 |
T2859 |
T2860 |
amod |
reduced,content |
R1975 |
T2860 |
T2846 |
conj |
content,loss |
R1976 |
T2861 |
T2860 |
compound |
cysteine,content |
R1977 |
T2862 |
T2863 |
punct |
(,index |
R1978 |
T2863 |
T2860 |
parataxis |
index,content |
R1979 |
T2864 |
T2863 |
compound |
cysteine,index |
R1980 |
T2865 |
T2863 |
npadvmod |
9.3,index |
R1981 |
T2866 |
T2865 |
punct |
±,9.3 |
R1982 |
T2867 |
T2868 |
nummod |
0.9,deviation |
R1983 |
T2868 |
T2865 |
appos |
deviation,9.3 |
R1984 |
T2869 |
T2868 |
amod |
standard,deviation |
R1985 |
T2870 |
T2871 |
punct |
[,% |
R1986 |
T2871 |
T2865 |
parataxis |
%,9.3 |
R1987 |
T2872 |
T2871 |
nummod |
87,% |
R1988 |
T2873 |
T2871 |
prep |
of,% |
R1989 |
T2874 |
T2873 |
pobj |
wt,of |
R1990 |
T2875 |
T2871 |
punct |
],% |
R1991 |
T2876 |
T2863 |
punct |
", ",index |
R1992 |
T2877 |
T2878 |
nsubj |
p,TTD |
R1993 |
T2878 |
T2863 |
ccomp |
TTD,index |
R1994 |
T2879 |
T2878 |
punct |
=,TTD |
R1995 |
T2880 |
T2878 |
nummod |
0.01,TTD |
R1996 |
T2881 |
T2878 |
cc |
versus,TTD |
R1997 |
T2882 |
T2863 |
punct |
),index |
R1998 |
T2883 |
T2860 |
punct |
", ",content |
R1999 |
T2884 |
T2885 |
npadvmod |
ageing,associated |
R2000 |
T2885 |
T2887 |
amod |
associated,cachexia |
R2001 |
T2886 |
T2885 |
punct |
-,associated |
R2002 |
T2887 |
T2860 |
conj |
cachexia,content |
R2003 |
T2888 |
T2887 |
amod |
premature,cachexia |
R2004 |
T2889 |
T2890 |
punct |
(,were |
R2005 |
T2890 |
T2887 |
parataxis |
were,cachexia |
R2006 |
T2891 |
T2890 |
nsubj |
males,were |
R2007 |
T2892 |
T2891 |
cc |
and,males |
R2008 |
T2893 |
T2891 |
conj |
females,males |
R2009 |
T2894 |
T2895 |
nummod |
36.1,6.4 |
R2010 |
T2895 |
T2897 |
nummod |
6.4,g |
R2011 |
T2896 |
T2895 |
punct |
±,6.4 |
R2012 |
T2897 |
T2890 |
attr |
g,were |
R2013 |
T2898 |
T2899 |
punct |
[,% |
R2014 |
T2899 |
T2897 |
parataxis |
%,g |
R2015 |
T2900 |
T2899 |
nummod |
93,% |
R2016 |
T2901 |
T2899 |
prep |
of,% |
R2017 |
T2902 |
T2901 |
pobj |
wt,of |
R2018 |
T2903 |
T2899 |
punct |
],% |
R2019 |
T2904 |
T2897 |
cc |
and,g |
R2020 |
T2905 |
T2906 |
nummod |
39.2,3.2 |
R2021 |
T2906 |
T2908 |
nummod |
3.2,g |
R2022 |
T2907 |
T2906 |
punct |
±,3.2 |
R2023 |
T2908 |
T2897 |
conj |
g,g |
R2024 |
T2909 |
T2910 |
punct |
[,% |
R2025 |
T2910 |
T2908 |
parataxis |
%,g |
R2026 |
T2911 |
T2910 |
nummod |
116,% |
R2027 |
T2912 |
T2910 |
prep |
of,% |
R2028 |
T2913 |
T2912 |
pobj |
wt,of |
R2029 |
T2914 |
T2910 |
punct |
],% |
R2030 |
T2915 |
T2890 |
punct |
", ",were |
R2031 |
T2916 |
T2890 |
advmod |
respectively,were |
R2032 |
T2917 |
T2890 |
punct |
),were |
R2033 |
T2918 |
T2887 |
punct |
", ",cachexia |
R2034 |
T2919 |
T2887 |
cc |
and,cachexia |
R2035 |
T2920 |
T2921 |
amod |
reduced,span |
R2036 |
T2921 |
T2887 |
conj |
span,cachexia |
R2037 |
T2922 |
T2921 |
compound |
life,span |
R2038 |
T2923 |
T2924 |
punct |
(,Table |
R2039 |
T2924 |
T2831 |
parataxis |
Table,rescued |
R2040 |
T2925 |
T2924 |
nummod |
2,Table |
R2041 |
T2926 |
T2924 |
punct |
),Table |
R2042 |
T2927 |
T2831 |
punct |
.,rescued |
R2043 |
T2929 |
T2930 |
advcl |
Taken,indicate |
R2044 |
T2931 |
T2929 |
advmod |
together,Taken |
R2045 |
T2932 |
T2930 |
punct |
", ",indicate |
R2046 |
T2933 |
T2934 |
det |
these,data |
R2047 |
T2934 |
T2930 |
nsubj |
data,indicate |
R2048 |
T2935 |
T2936 |
mark |
that,were |
R2049 |
T2936 |
T2930 |
ccomp |
were,indicate |
R2050 |
T2937 |
T2938 |
nummod |
two,alleles |
R2051 |
T2938 |
T2936 |
nsubj |
alleles,were |
R2052 |
T2939 |
T2938 |
amod |
independent,alleles |
R2053 |
T2940 |
T2938 |
punct |
", ",alleles |
R2054 |
T2941 |
T2942 |
dep |
which,are |
R2055 |
T2942 |
T2938 |
relcl |
are,alleles |
R2056 |
T2943 |
T2942 |
prep |
on,are |
R2057 |
T2944 |
T2945 |
poss |
their,own |
R2058 |
T2945 |
T2943 |
pobj |
own,on |
R2059 |
T2946 |
T2942 |
acomp |
unable,are |
R2060 |
T2947 |
T2948 |
aux |
to,support |
R2061 |
T2948 |
T2946 |
xcomp |
support,unable |
R2062 |
T2949 |
T2948 |
dobj |
viability,support |
R2063 |
T2950 |
T2951 |
punct |
(,Table |
R2064 |
T2951 |
T2948 |
parataxis |
Table,support |
R2065 |
T2952 |
T2951 |
nummod |
1,Table |
R2066 |
T2953 |
T2951 |
punct |
),Table |
R2067 |
T2954 |
T2936 |
punct |
", ",were |
R2068 |
T2955 |
T2936 |
advmod |
nonetheless,were |
R2069 |
T2956 |
T2936 |
acomp |
able,were |
R2070 |
T2957 |
T2958 |
aux |
to,ameliorate |
R2071 |
T2958 |
T2956 |
xcomp |
ameliorate,able |
R2072 |
T2959 |
T2960 |
npadvmod |
TTD,associated |
R2073 |
T2960 |
T2962 |
amod |
associated,phenotypes |
R2074 |
T2961 |
T2960 |
punct |
-,associated |
R2075 |
T2962 |
T2958 |
dobj |
phenotypes,ameliorate |
R2076 |
T2963 |
T2964 |
advmod |
in,vivo |
R2077 |
T2964 |
T2958 |
advmod |
vivo,ameliorate |
R2078 |
T2965 |
T2966 |
punct |
(,Table |
R2079 |
T2966 |
T2958 |
parataxis |
Table,ameliorate |
R2080 |
T2967 |
T2966 |
nummod |
2,Table |
R2081 |
T2968 |
T2966 |
punct |
),Table |
R2082 |
T2969 |
T2930 |
punct |
.,indicate |
R2083 |
T3312 |
T3313 |
amod |
Molecular,Mechanisms |
R2084 |
T3314 |
T3313 |
prep |
of,Mechanisms |
R2085 |
T3315 |
T3316 |
amod |
Biallelic,Effects |
R2086 |
T3316 |
T3314 |
pobj |
Effects,of |
R2087 |
T3318 |
T3319 |
nsubj |
We,turned |
R2088 |
T3320 |
T3319 |
advmod |
next,turned |
R2089 |
T3321 |
T3319 |
prep |
to,turned |
R2090 |
T3322 |
T3323 |
npadvmod |
UV,based |
R2091 |
T3323 |
T3325 |
amod |
based,assays |
R2092 |
T3324 |
T3323 |
punct |
-,based |
R2093 |
T3325 |
T3321 |
pobj |
assays,to |
R2094 |
T3326 |
T3325 |
amod |
cellular,assays |
R2095 |
T3327 |
T3325 |
prep |
including,assays |
R2096 |
T3328 |
T3329 |
amod |
unscheduled,synthesis |
R2097 |
T3329 |
T3327 |
pobj |
synthesis,including |
R2098 |
T3330 |
T3329 |
compound |
DNA,synthesis |
R2099 |
T3331 |
T3329 |
prep |
after,synthesis |
R2100 |
T3332 |
T3333 |
compound |
UV,irradiation |
R2101 |
T3333 |
T3331 |
pobj |
irradiation,after |
R2102 |
T3334 |
T3335 |
punct |
(,UDS |
R2103 |
T3335 |
T3329 |
parataxis |
UDS,synthesis |
R2104 |
T3336 |
T3335 |
compound |
UV,UDS |
R2105 |
T3337 |
T3335 |
punct |
-,UDS |
R2106 |
T3338 |
T3335 |
punct |
),UDS |
R2107 |
T3339 |
T3329 |
punct |
", ",synthesis |
R2108 |
T3340 |
T3329 |
conj |
recovery,synthesis |
R2109 |
T3341 |
T3340 |
prep |
of,recovery |
R2110 |
T3342 |
T3343 |
compound |
RNA,synthesis |
R2111 |
T3343 |
T3341 |
pobj |
synthesis,of |
R2112 |
T3344 |
T3340 |
prep |
after,recovery |
R2113 |
T3345 |
T3346 |
compound |
UV,irradiation |
R2114 |
T3346 |
T3344 |
pobj |
irradiation,after |
R2115 |
T3347 |
T3348 |
punct |
(,RRS |
R2116 |
T3348 |
T3340 |
parataxis |
RRS,recovery |
R2117 |
T3349 |
T3348 |
compound |
UV,RRS |
R2118 |
T3350 |
T3348 |
punct |
-,RRS |
R2119 |
T3351 |
T3348 |
punct |
),RRS |
R2120 |
T3352 |
T3340 |
punct |
", ",recovery |
R2121 |
T3353 |
T3340 |
cc |
and,recovery |
R2122 |
T3354 |
T3355 |
compound |
UV,survival |
R2123 |
T3355 |
T3340 |
conj |
survival,recovery |
R2124 |
T3356 |
T3329 |
punct |
", ",synthesis |
R2125 |
T3357 |
T3358 |
dep |
which,report |
R2126 |
T3358 |
T3329 |
relcl |
report,synthesis |
R2127 |
T3359 |
T3358 |
prep |
on,report |
R2128 |
T3360 |
T3361 |
det |
the,subpathways |
R2129 |
T3361 |
T3359 |
pobj |
subpathways,on |
R2130 |
T3362 |
T3361 |
compound |
NER,subpathways |
R2131 |
T3363 |
T3364 |
punct |
(,NER |
R2132 |
T3364 |
T3361 |
parataxis |
NER,subpathways |
R2133 |
T3365 |
T3364 |
amod |
global,NER |
R2134 |
T3366 |
T3364 |
compound |
genome,NER |
R2135 |
T3367 |
T3364 |
cc |
and,NER |
R2136 |
T3368 |
T3369 |
npadvmod |
transcription,coupled |
R2137 |
T3369 |
T3371 |
amod |
coupled,NER |
R2138 |
T3370 |
T3369 |
punct |
-,coupled |
R2139 |
T3371 |
T3364 |
conj |
NER,NER |
R2140 |
T3372 |
T3364 |
punct |
),NER |
R2141 |
T3373 |
T3361 |
cc |
and,subpathways |
R2142 |
T3374 |
T3375 |
amod |
total,NER |
R2143 |
T3375 |
T3361 |
conj |
NER,subpathways |
R2144 |
T3376 |
T3358 |
punct |
", ",report |
R2145 |
T3377 |
T3358 |
advmod |
respectively,report |
R2146 |
T3378 |
T3319 |
punct |
.,turned |
R2147 |
T3380 |
T3381 |
prep |
In,improved |
R2148 |
T3382 |
T3380 |
pobj |
none,In |
R2149 |
T3383 |
T3382 |
prep |
of,none |
R2150 |
T3384 |
T3385 |
det |
these,assays |
R2151 |
T3385 |
T3383 |
pobj |
assays,of |
R2152 |
T3386 |
T3381 |
auxpass |
was,improved |
R2153 |
T3387 |
T3388 |
det |
the,response |
R2154 |
T3388 |
T3381 |
nsubjpass |
response,improved |
R2155 |
T3389 |
T3388 |
prep |
to,response |
R2156 |
T3390 |
T3389 |
pobj |
UV,to |
R2157 |
T3391 |
T3381 |
prep |
in,improved |
R2158 |
T3392 |
T3393 |
compound |
compound,heterozygotes |
R2159 |
T3393 |
T3391 |
pobj |
heterozygotes,in |
R2160 |
T3394 |
T3381 |
advcl |
relative,improved |
R2161 |
T3395 |
T3394 |
prep |
to,relative |
R2162 |
T3396 |
T3397 |
compound |
TTD,homozygotes |
R2163 |
T3397 |
T3395 |
pobj |
homozygotes,to |
R2164 |
T3398 |
T3399 |
punct |
(,4A |
R2165 |
T3399 |
T3381 |
parataxis |
4A,improved |
R2166 |
T3400 |
T3399 |
compound |
Figure,4A |
R2167 |
T3401 |
T3402 |
punct |
–,4C |
R2168 |
T3402 |
T3399 |
prep |
4C,4A |
R2169 |
T3403 |
T3399 |
punct |
),4A |
R2170 |
T3404 |
T3381 |
punct |
.,improved |
R2171 |
T3406 |
T3407 |
advmod |
However,observed |
R2172 |
T3408 |
T3407 |
punct |
", ",observed |
R2173 |
T3409 |
T3407 |
prep |
unlike,observed |
R2174 |
T3410 |
T3411 |
det |
the,phenotypes |
R2175 |
T3411 |
T3409 |
pobj |
phenotypes,unlike |
R2176 |
T3412 |
T3413 |
advmod |
in,vivo |
R2177 |
T3413 |
T3411 |
amod |
vivo,phenotypes |
R2178 |
T3414 |
T3411 |
compound |
TTD,phenotypes |
R2179 |
T3415 |
T3411 |
acl |
described,phenotypes |
R2180 |
T3416 |
T3415 |
advmod |
above,described |
R2181 |
T3417 |
T3411 |
punct |
", ",phenotypes |
R2182 |
T3418 |
T3419 |
prep |
in,were |
R2183 |
T3419 |
T3411 |
relcl |
were,phenotypes |
R2184 |
T3420 |
T3418 |
pobj |
which,in |
R2185 |
T3421 |
T3422 |
nmod |
XpdTTD,TTD |
R2186 |
T3422 |
T3424 |
nmod |
TTD,animals |
R2187 |
T3423 |
T3422 |
punct |
/,TTD |
R2188 |
T3424 |
T3419 |
nsubj |
animals,were |
R2189 |
T3425 |
T3422 |
cc |
and,TTD |
R2190 |
T3426 |
T3427 |
compound |
XpdTTD,KO |
R2191 |
T3427 |
T3422 |
conj |
KO,TTD |
R2192 |
T3428 |
T3427 |
punct |
/,KO |
R2193 |
T3429 |
T3419 |
acomp |
indistinguishable,were |
R2194 |
T3430 |
T3407 |
punct |
", ",observed |
R2195 |
T3431 |
T3432 |
compound |
XpdTTD,effects |
R2196 |
T3432 |
T3407 |
nsubjpass |
effects,observed |
R2197 |
T3433 |
T3432 |
compound |
dosage,effects |
R2198 |
T3434 |
T3407 |
auxpass |
were,observed |
R2199 |
T3435 |
T3407 |
prep |
in,observed |
R2200 |
T3436 |
T3437 |
compound |
UV,survival |
R2201 |
T3437 |
T3435 |
pobj |
survival,in |
R2202 |
T3438 |
T3437 |
punct |
", ",survival |
R2203 |
T3439 |
T3440 |
compound |
UV,UDS |
R2204 |
T3440 |
T3437 |
conj |
UDS,survival |
R2205 |
T3441 |
T3440 |
punct |
-,UDS |
R2206 |
T3442 |
T3440 |
punct |
", ",UDS |
R2207 |
T3443 |
T3440 |
cc |
and,UDS |
R2208 |
T3444 |
T3445 |
compound |
UV,RRS |
R2209 |
T3445 |
T3440 |
conj |
RRS,UDS |
R2210 |
T3446 |
T3445 |
punct |
-,RRS |
R2211 |
T3447 |
T3407 |
punct |
", ",observed |
R2212 |
T3448 |
T3407 |
advcl |
indicating,observed |
R2213 |
T3449 |
T3450 |
mark |
that,correlate |
R2214 |
T3450 |
T3448 |
ccomp |
correlate,indicating |
R2215 |
T3451 |
T3452 |
amod |
cellular,parameters |
R2216 |
T3452 |
T3450 |
nsubj |
parameters,correlate |
R2217 |
T3453 |
T3454 |
mark |
as,measured |
R2218 |
T3454 |
T3452 |
advcl |
measured,parameters |
R2219 |
T3455 |
T3454 |
prep |
in,measured |
R2220 |
T3456 |
T3455 |
pobj |
fibroblasts,in |
R2221 |
T3457 |
T3454 |
advmod |
here,measured |
R2222 |
T3458 |
T3450 |
aux |
do,correlate |
R2223 |
T3459 |
T3450 |
neg |
not,correlate |
R2224 |
T3460 |
T3450 |
advmod |
always,correlate |
R2225 |
T3461 |
T3450 |
prep |
with,correlate |
R2226 |
T3462 |
T3463 |
det |
the,phenotype |
R2227 |
T3463 |
T3461 |
pobj |
phenotype,with |
R2228 |
T3464 |
T3450 |
prep |
at,correlate |
R2229 |
T3465 |
T3466 |
det |
the,level |
R2230 |
T3466 |
T3464 |
pobj |
level,at |
R2231 |
T3467 |
T3466 |
prep |
of,level |
R2232 |
T3468 |
T3469 |
det |
the,organism |
R2233 |
T3469 |
T3467 |
pobj |
organism,of |
R2234 |
T3470 |
T3469 |
amod |
intact,organism |
R2235 |
T3471 |
T3407 |
punct |
.,observed |
R2236 |
T3473 |
T3474 |
nmod |
XpdTTD,KO |
R2237 |
T3474 |
T3476 |
nmod |
KO,cells |
R2238 |
T3475 |
T3474 |
punct |
/,KO |
R2239 |
T3476 |
T3478 |
nsubjpass |
cells,used |
R2240 |
T3477 |
T3476 |
amod |
hemizygous,cells |
R2241 |
T3479 |
T3478 |
auxpass |
were,used |
R2242 |
T3480 |
T3478 |
advmod |
thus,used |
R2243 |
T3481 |
T3478 |
prep |
as,used |
R2244 |
T3482 |
T3483 |
det |
the,baseline |
R2245 |
T3483 |
T3481 |
pobj |
baseline,as |
R2246 |
T3484 |
T3485 |
prep |
on,compare |
R2247 |
T3485 |
T3483 |
relcl |
compare,baseline |
R2248 |
T3486 |
T3484 |
pobj |
which,on |
R2249 |
T3487 |
T3485 |
aux |
to,compare |
R2250 |
T3488 |
T3489 |
det |
the,activity |
R2251 |
T3489 |
T3485 |
dobj |
activity,compare |
R2252 |
T3490 |
T3489 |
prep |
of,activity |
R2253 |
T3491 |
T3492 |
nmod |
compound,cells |
R2254 |
T3492 |
T3490 |
pobj |
cells,of |
R2255 |
T3493 |
T3492 |
amod |
heterozygous,cells |
R2256 |
T3494 |
T3478 |
punct |
.,used |
R2257 |
T3496 |
T3497 |
advcl |
Relative,improved |
R2258 |
T3498 |
T3496 |
prep |
to,Relative |
R2259 |
T3499 |
T3500 |
compound |
XpdTTD,KO |
R2260 |
T3500 |
T3502 |
compound |
KO,cells |
R2261 |
T3501 |
T3500 |
punct |
/,KO |
R2262 |
T3502 |
T3498 |
pobj |
cells,to |
R2263 |
T3503 |
T3502 |
compound |
hemizygote,cells |
R2264 |
T3504 |
T3497 |
punct |
", ",improved |
R2265 |
T3505 |
T3506 |
compound |
UV,survival |
R2266 |
T3506 |
T3497 |
nsubjpass |
survival,improved |
R2267 |
T3507 |
T3497 |
auxpass |
was,improved |
R2268 |
T3508 |
T3497 |
prep |
by,improved |
R2269 |
T3509 |
T3510 |
det |
the,allele |
R2270 |
T3510 |
T3508 |
pobj |
allele,by |
R2271 |
T3511 |
T3510 |
amod |
homozygous,allele |
R2272 |
T3512 |
T3510 |
amod |
lethal,allele |
R2273 |
T3513 |
T3510 |
compound |
Xpd†XPCS,allele |
R2274 |
T3514 |
T3510 |
prep |
in,allele |
R2275 |
T3515 |
T3516 |
nmod |
XpdTTD,†XPCS |
R2276 |
T3516 |
T3518 |
nmod |
†XPCS,cells |
R2277 |
T3517 |
T3516 |
punct |
/,†XPCS |
R2278 |
T3518 |
T3514 |
pobj |
cells,in |
R2279 |
T3519 |
T3518 |
nmod |
compound,cells |
R2280 |
T3520 |
T3518 |
amod |
heterozygous,cells |
R2281 |
T3521 |
T3508 |
cc |
and,by |
R2282 |
T3522 |
T3523 |
prep |
to,by |
R2283 |
T3523 |
T3508 |
conj |
by,by |
R2284 |
T3524 |
T3525 |
det |
a,degree |
R2285 |
T3525 |
T3522 |
pobj |
degree,to |
R2286 |
T3526 |
T3525 |
amod |
lesser,degree |
R2287 |
T3527 |
T3528 |
det |
the,allele |
R2288 |
T3528 |
T3523 |
pobj |
allele,by |
R2289 |
T3529 |
T3528 |
compound |
Xpd†XP,allele |
R2290 |
T3530 |
T3531 |
punct |
(,4A |
R2291 |
T3531 |
T3497 |
parataxis |
4A,improved |
R2292 |
T3532 |
T3531 |
compound |
Figure,4A |
R2293 |
T3533 |
T3531 |
punct |
),4A |
R2294 |
T3534 |
T3497 |
punct |
.,improved |
R2295 |
T3536 |
T3537 |
prep |
Because,were |
R2296 |
T3538 |
T3536 |
pcomp |
of,Because |
R2297 |
T3539 |
T3540 |
amod |
embryonic,lethality |
R2298 |
T3540 |
T3536 |
pobj |
lethality,Because |
R2299 |
T3541 |
T3539 |
cc |
and,embryonic |
R2300 |
T3542 |
T3539 |
conj |
cellular,embryonic |
R2301 |
T3543 |
T3537 |
punct |
", ",were |
R2302 |
T3544 |
T3537 |
nsubj |
we,were |
R2303 |
T3545 |
T3537 |
acomp |
unable,were |
R2304 |
T3546 |
T3547 |
aux |
to,test |
R2305 |
T3547 |
T3545 |
xcomp |
test,unable |
R2306 |
T3548 |
T3549 |
compound |
UV,survival |
R2307 |
T3549 |
T3547 |
dobj |
survival,test |
R2308 |
T3550 |
T3549 |
acl |
associated,survival |
R2309 |
T3551 |
T3550 |
advmod |
exclusively,associated |
R2310 |
T3552 |
T3550 |
prep |
with,associated |
R2311 |
T3553 |
T3554 |
det |
the,alleles |
R2312 |
T3554 |
T3552 |
pobj |
alleles,with |
R2313 |
T3555 |
T3554 |
nmod |
Xpd†XPCS,alleles |
R2314 |
T3556 |
T3555 |
cc |
or,Xpd†XPCS |
R2315 |
T3557 |
T3555 |
conj |
Xpd†XP,Xpd†XPCS |
R2316 |
T3558 |
T3537 |
punct |
.,were |
R2317 |
T3560 |
T3561 |
advmod |
However,known |
R2318 |
T3562 |
T3561 |
punct |
", ",known |
R2319 |
T3563 |
T3564 |
amod |
homozygous,XPDXP |
R2320 |
T3564 |
T3565 |
nmod |
XPDXP,cells |
R2321 |
T3565 |
T3561 |
nsubjpass |
cells,known |
R2322 |
T3566 |
T3567 |
punct |
(,XPDR683W |
R2323 |
T3567 |
T3564 |
parataxis |
XPDR683W,XPDXP |
R2324 |
T3568 |
T3567 |
punct |
),XPDR683W |
R2325 |
T3569 |
T3564 |
cc |
and,XPDXP |
R2326 |
T3570 |
T3571 |
amod |
hemizygous,XPDXPCS |
R2327 |
T3571 |
T3564 |
conj |
XPDXPCS,XPDXP |
R2328 |
T3572 |
T3573 |
punct |
(,XPDG602D |
R2329 |
T3573 |
T3571 |
parataxis |
XPDG602D,XPDXPCS |
R2330 |
T3574 |
T3573 |
punct |
),XPDG602D |
R2331 |
T3575 |
T3565 |
amod |
human,cells |
R2332 |
T3576 |
T3561 |
auxpass |
are,known |
R2333 |
T3577 |
T3578 |
aux |
to,be |
R2334 |
T3578 |
T3561 |
xcomp |
be,known |
R2335 |
T3579 |
T3580 |
advmod |
highly,sensitive |
R2336 |
T3580 |
T3578 |
acomp |
sensitive,be |
R2337 |
T3581 |
T3580 |
prep |
to,sensitive |
R2338 |
T3582 |
T3581 |
pobj |
UV,to |
R2339 |
T3583 |
T3584 |
punct |
[,25 |
R2340 |
T3584 |
T3578 |
parataxis |
25,be |
R2341 |
T3585 |
T3584 |
nummod |
19,25 |
R2342 |
T3586 |
T3584 |
punct |
",",25 |
R2343 |
T3587 |
T3584 |
punct |
],25 |
R2344 |
T3588 |
T3561 |
punct |
", ",known |
R2345 |
T3589 |
T3590 |
mark |
as,are |
R2346 |
T3590 |
T3561 |
advcl |
are,known |
R2347 |
T3591 |
T3590 |
nsubj |
cells,are |
R2348 |
T3592 |
T3591 |
prep |
from,cells |
R2349 |
T3593 |
T3594 |
det |
a,model |
R2350 |
T3594 |
T3592 |
pobj |
model,from |
R2351 |
T3595 |
T3594 |
amod |
homozygous,model |
R2352 |
T3596 |
T3594 |
amod |
viable,model |
R2353 |
T3597 |
T3598 |
nmod |
XpdXPCS,XPCS |
R2354 |
T3598 |
T3594 |
nmod |
XPCS,model |
R2355 |
T3599 |
T3598 |
punct |
/,XPCS |
R2356 |
T3600 |
T3601 |
punct |
(,G602D |
R2357 |
T3601 |
T3598 |
parataxis |
G602D,XPCS |
R2358 |
T3602 |
T3601 |
compound |
XPDG602D,G602D |
R2359 |
T3603 |
T3601 |
punct |
/,G602D |
R2360 |
T3604 |
T3601 |
punct |
),G602D |
R2361 |
T3605 |
T3594 |
compound |
mouse,model |
R2362 |
T3606 |
T3607 |
punct |
(,4A |
R2363 |
T3607 |
T3590 |
parataxis |
4A,are |
R2364 |
T3608 |
T3607 |
compound |
Figure,4A |
R2365 |
T3609 |
T3607 |
punct |
", ",4A |
R2366 |
T3610 |
T3611 |
amod |
dotted,line |
R2367 |
T3611 |
T3607 |
appos |
line,4A |
R2368 |
T3612 |
T3607 |
punct |
),4A |
R2369 |
T3613 |
T3614 |
punct |
[,23 |
R2370 |
T3614 |
T3561 |
parataxis |
23,known |
R2371 |
T3615 |
T3614 |
punct |
],23 |
R2372 |
T3616 |
T3561 |
punct |
.,known |
R2373 |
T3618 |
T3619 |
advmod |
Thus,represents |
R2374 |
T3620 |
T3619 |
punct |
", ",represents |
R2375 |
T3621 |
T3622 |
det |
the,survival |
R2376 |
T3622 |
T3619 |
nsubj |
survival,represents |
R2377 |
T3623 |
T3622 |
prep |
of,survival |
R2378 |
T3624 |
T3625 |
nmod |
XpdTTD,†XPCS |
R2379 |
T3625 |
T3627 |
nmod |
†XPCS,cells |
R2380 |
T3626 |
T3625 |
punct |
/,†XPCS |
R2381 |
T3627 |
T3623 |
pobj |
cells,of |
R2382 |
T3628 |
T3625 |
punct |
(,†XPCS |
R2383 |
T3629 |
T3625 |
cc |
and,†XPCS |
R2384 |
T3630 |
T3631 |
compound |
XpdTTD,†XP |
R2385 |
T3631 |
T3625 |
conj |
†XP,†XPCS |
R2386 |
T3632 |
T3631 |
punct |
/,†XP |
R2387 |
T3633 |
T3627 |
punct |
),cells |
R2388 |
T3634 |
T3619 |
advmod |
likely,represents |
R2389 |
T3635 |
T3636 |
det |
a,level |
R2390 |
T3636 |
T3619 |
dobj |
level,represents |
R2391 |
T3637 |
T3636 |
prep |
of,level |
R2392 |
T3638 |
T3639 |
compound |
UV,resistance |
R2393 |
T3639 |
T3637 |
pobj |
resistance,of |
R2394 |
T3640 |
T3641 |
dep |
that,impart |
R2395 |
T3641 |
T3636 |
relcl |
impart,level |
R2396 |
T3642 |
T3643 |
preconj |
neither,allele |
R2397 |
T3643 |
T3641 |
nsubj |
allele,impart |
R2398 |
T3644 |
T3643 |
amod |
mutant,allele |
R2399 |
T3645 |
T3641 |
aux |
can,impart |
R2400 |
T3646 |
T3641 |
prep |
on,impart |
R2401 |
T3647 |
T3648 |
poss |
its,own |
R2402 |
T3648 |
T3646 |
pobj |
own,on |
R2403 |
T3649 |
T3650 |
punct |
(,Table |
R2404 |
T3650 |
T3619 |
parataxis |
Table,represents |
R2405 |
T3651 |
T3650 |
nummod |
2,Table |
R2406 |
T3652 |
T3650 |
punct |
),Table |
R2407 |
T3653 |
T3619 |
punct |
.,represents |
R2408 |
T3655 |
T3656 |
amod |
Significant,effects |
R2409 |
T3656 |
T3657 |
nsubjpass |
effects,observed |
R2410 |
T3658 |
T3656 |
prep |
of,effects |
R2411 |
T3659 |
T3660 |
compound |
compound,heterozygosity |
R2412 |
T3660 |
T3658 |
pobj |
heterozygosity,of |
R2413 |
T3661 |
T3656 |
prep |
on,effects |
R2414 |
T3662 |
T3663 |
compound |
NER,subpathways |
R2415 |
T3663 |
T3661 |
pobj |
subpathways,on |
R2416 |
T3664 |
T3656 |
amod |
relative,effects |
R2417 |
T3665 |
T3664 |
prep |
to,relative |
R2418 |
T3666 |
T3667 |
compound |
XpdTTD,KO |
R2419 |
T3667 |
T3669 |
compound |
KO,cells |
R2420 |
T3668 |
T3667 |
punct |
/,KO |
R2421 |
T3669 |
T3665 |
pobj |
cells,to |
R2422 |
T3670 |
T3657 |
auxpass |
were,observed |
R2423 |
T3671 |
T3657 |
prep |
in,observed |
R2424 |
T3672 |
T3673 |
compound |
XpdTTD,†XP |
R2425 |
T3673 |
T3675 |
compound |
†XP,cells |
R2426 |
T3674 |
T3673 |
punct |
/,†XP |
R2427 |
T3675 |
T3671 |
pobj |
cells,in |
R2428 |
T3676 |
T3671 |
cc |
but,in |
R2429 |
T3677 |
T3678 |
advmod |
only,for |
R2430 |
T3678 |
T3671 |
conj |
for,in |
R2431 |
T3679 |
T3680 |
compound |
UV,UDS |
R2432 |
T3680 |
T3682 |
compound |
UDS,activity |
R2433 |
T3681 |
T3680 |
punct |
-,UDS |
R2434 |
T3682 |
T3678 |
pobj |
activity,for |
R2435 |
T3683 |
T3657 |
punct |
.,observed |
R2436 |
T3685 |
T3686 |
advmod |
Finally,exhibited |
R2437 |
T3687 |
T3686 |
punct |
", ",exhibited |
R2438 |
T3688 |
T3686 |
nsubj |
none,exhibited |
R2441 |
T3691 |
T3689 |
pobj |
combinations,of |
R2442 |
T3692 |
T3691 |
amod |
mutant,combinations |
R2443 |
T3693 |
T3691 |
compound |
TFIIH,combinations |
R2444 |
T3694 |
T3691 |
punct |
(,combinations |
R2445 |
T3695 |
T3691 |
acl |
carrying,combinations |
R2446 |
T3696 |
T3695 |
dobj |
alterations,carrying |
R2447 |
T3697 |
T3696 |
acl |
associated,alterations |
R2448 |
T3698 |
T3697 |
prep |
with,associated |
R2449 |
T3699 |
T3698 |
pobj |
TTD,with |
R2450 |
T3700 |
T3701 |
punct |
[,XPDR722W |
R2451 |
T3701 |
T3699 |
parataxis |
XPDR722W,TTD |
R2452 |
T3702 |
T3701 |
punct |
],XPDR722W |
R2453 |
T3703 |
T3699 |
punct |
", ",TTD |
R2454 |
T3704 |
T3699 |
conj |
XPCS,TTD |
R2455 |
T3705 |
T3706 |
punct |
[,XPDG602D |
R2456 |
T3706 |
T3704 |
parataxis |
XPDG602D,XPCS |
R2457 |
T3707 |
T3706 |
punct |
],XPDG602D |
R2458 |
T3708 |
T3704 |
punct |
", ",XPCS |
R2459 |
T3709 |
T3704 |
cc |
or,XPCS |
R2460 |
T3710 |
T3704 |
conj |
XP,XPCS |
R2461 |
T3711 |
T3712 |
punct |
[,XPDR683W |
R2462 |
T3712 |
T3710 |
parataxis |
XPDR683W,XP |
R2463 |
T3713 |
T3712 |
punct |
],XPDR683W |
R2464 |
T3714 |
T3686 |
punct |
),exhibited |
R2465 |
T3715 |
T3686 |
dobj |
synergism,exhibited |
R2466 |
T3716 |
T3686 |
prep |
in,exhibited |
R2467 |
T3717 |
T3718 |
det |
an,reaction |
R2468 |
T3718 |
T3716 |
pobj |
reaction,in |
R2469 |
T3719 |
T3720 |
advmod |
in,vitro |
R2470 |
T3720 |
T3718 |
amod |
vitro,reaction |
R2471 |
T3721 |
T3718 |
compound |
NER,reaction |
R2472 |
T3722 |
T3718 |
acl |
reconstituted,reaction |
R2473 |
T3723 |
T3722 |
prep |
with,reconstituted |
R2474 |
T3724 |
T3725 |
amod |
different,complexes |
R2475 |
T3725 |
T3723 |
pobj |
complexes,with |
R2476 |
T3726 |
T3725 |
amod |
mutant,complexes |
R2477 |
T3727 |
T3725 |
compound |
TFIIH,complexes |
R2478 |
T3728 |
T3729 |
punct |
(,4D |
R2479 |
T3729 |
T3686 |
parataxis |
4D,exhibited |
R2480 |
T3730 |
T3729 |
compound |
Figure,4D |
R2481 |
T3731 |
T3729 |
punct |
),4D |
R2482 |
T3732 |
T3686 |
punct |
.,exhibited |
R2483 |
T3734 |
T3735 |
advcl |
Taken,are |
R2484 |
T3736 |
T3734 |
advmod |
together,Taken |
R2485 |
T3737 |
T3735 |
punct |
", ",are |
R2486 |
T3738 |
T3739 |
det |
these,data |
R2487 |
T3739 |
T3735 |
nsubj |
data,are |
R2488 |
T3740 |
T3735 |
acomp |
consistent,are |
R2489 |
T3741 |
T3740 |
prep |
with,consistent |
R2490 |
T3742 |
T3743 |
amod |
interallelic,complementation |
R2491 |
T3743 |
T3741 |
pobj |
complementation,with |
R2492 |
T3744 |
T3743 |
prep |
of,complementation |
R2493 |
T3745 |
T3746 |
compound |
UV,sensitivity |
R2494 |
T3746 |
T3744 |
pobj |
sensitivity,of |
R2495 |
T3747 |
T3743 |
prep |
in,complementation |
R2496 |
T3748 |
T3747 |
pobj |
cells,in |
R2497 |
T3749 |
T3735 |
cc |
but,are |
R2498 |
T3750 |
T3735 |
conj |
underscore,are |
R2499 |
T3751 |
T3752 |
det |
the,lack |
R2500 |
T3752 |
T3750 |
dobj |
lack,underscore |
R2501 |
T3753 |
T3752 |
prep |
of,lack |
R2502 |
T3754 |
T3755 |
det |
any,correlation |
R2503 |
T3755 |
T3753 |
pobj |
correlation,of |
R2504 |
T3756 |
T3755 |
prep |
between,correlation |
R2505 |
T3757 |
T3758 |
npadvmod |
UV,related |
R2506 |
T3758 |
T3760 |
amod |
related,characteristics |
R2507 |
T3759 |
T3758 |
punct |
-,related |
R2508 |
T3760 |
T3756 |
pobj |
characteristics,between |
R2509 |
T3761 |
T3760 |
compound |
repair,characteristics |
R2510 |
T3762 |
T3760 |
cc |
and,characteristics |
R2511 |
T3763 |
T3764 |
compound |
TTD,phenotypes |
R2512 |
T3764 |
T3760 |
conj |
phenotypes,characteristics |
R2513 |
T3765 |
T3764 |
compound |
progeroid,phenotypes |
R2514 |
T3766 |
T3755 |
prep |
in,correlation |
R2515 |
T3767 |
T3768 |
compound |
animal,models |
R2516 |
T3768 |
T3766 |
pobj |
models,in |
R2517 |
T3769 |
T3735 |
punct |
.,are |
R2572 |
T3867 |
T3865 |
pobj |
levels,of |
R2573 |
T3868 |
T3867 |
prep |
in,levels |
R2574 |
T3869 |
T3870 |
amod |
primary,fibroblasts |
R2575 |
T3870 |
T3868 |
pobj |
fibroblasts,in |
R2576 |
T3871 |
T3870 |
prep |
from,fibroblasts |
R2577 |
T3872 |
T3871 |
pobj |
patients,from |
R2578 |
T3873 |
T3872 |
prep |
with,patients |
R2579 |
T3874 |
T3873 |
pobj |
TTD,with |
R2580 |
T3875 |
T3860 |
prep |
compared,reduction |
R2581 |
T3876 |
T3875 |
prep |
with,compared |
R2582 |
T3877 |
T3878 |
compound |
wt,controls |
R2583 |
T3878 |
T3876 |
pobj |
controls,with |
R2584 |
T3879 |
T3860 |
prep |
due,reduction |
R2585 |
T3880 |
T3879 |
pcomp |
to,due |
R2586 |
T3881 |
T3882 |
amod |
reduced,stability |
R2587 |
T3882 |
T3879 |
pobj |
stability,due |
R2588 |
T3883 |
T3884 |
punct |
[,17 |
R2589 |
T3884 |
T3849 |
parataxis |
17,shown |
R2590 |
T3885 |
T3884 |
nummod |
16,17 |
R2591 |
T3886 |
T3884 |
punct |
",",17 |
R2592 |
T3887 |
T3884 |
punct |
],17 |
R2593 |
T3888 |
T3849 |
punct |
.,shown |
R2594 |
T3890 |
T3891 |
prep |
Despite,reduced |
R2595 |
T3892 |
T3890 |
pobj |
overexpression,Despite |
R2596 |
T3893 |
T3892 |
prep |
of,overexpression |
R2597 |
T3894 |
T3893 |
pobj |
mRNA,of |
R2598 |
T3895 |
T3894 |
prep |
from,mRNA |
R2599 |
T3896 |
T3897 |
det |
the,allele |
R2600 |
T3897 |
T3895 |
pobj |
allele,from |
R2601 |
T3898 |
T3897 |
compound |
XpdTTD,allele |
R2602 |
T3899 |
T3892 |
amod |
relative,overexpression |
R2603 |
T3900 |
T3899 |
prep |
to,relative |
R2604 |
T3901 |
T3902 |
det |
the,allele |
R2605 |
T3902 |
T3900 |
pobj |
allele,to |
R2606 |
T3903 |
T3902 |
compound |
wt,allele |
R2607 |
T3904 |
T3905 |
punct |
(,1E |
R2608 |
T3905 |
T3892 |
parataxis |
1E,overexpression |
R2609 |
T3906 |
T3905 |
compound |
Figure,1E |
R2610 |
T3907 |
T3905 |
punct |
),1E |
R2611 |
T3908 |
T3891 |
punct |
", ",reduced |
R2612 |
T3909 |
T3910 |
compound |
TFIIH,levels |
R2613 |
T3910 |
T3891 |
nsubjpass |
levels,reduced |
R2614 |
T3911 |
T3910 |
compound |
protein,levels |
R2615 |
T3912 |
T3891 |
auxpass |
were,reduced |
R2616 |
T3913 |
T3891 |
prep |
by,reduced |
R2617 |
T3914 |
T3915 |
nummod |
50,% |
R2618 |
T3915 |
T3913 |
pobj |
%,by |
R2619 |
T3916 |
T3891 |
prep |
in,reduced |
R2620 |
T3917 |
T3918 |
amod |
primary,fibroblasts |
R2621 |
T3918 |
T3916 |
pobj |
fibroblasts,in |
R2622 |
T3919 |
T3918 |
compound |
mouse,fibroblasts |
R2623 |
T3920 |
T3921 |
compound |
XpdTTD,TTD |
R2624 |
T3921 |
T3918 |
compound |
TTD,fibroblasts |
R2625 |
T3922 |
T3921 |
punct |
/,TTD |
R2626 |
T3923 |
T3924 |
punct |
(,4E |
R2627 |
T3924 |
T3891 |
parataxis |
4E,reduced |
R2628 |
T3925 |
T3924 |
compound |
Figure,4E |
R2629 |
T3926 |
T3924 |
cc |
and,4E |
R2630 |
T3927 |
T3924 |
conj |
4F,4E |
R2631 |
T3928 |
T3924 |
punct |
),4E |
R2632 |
T3929 |
T3891 |
punct |
", ",reduced |
R2633 |
T3930 |
T3931 |
advmod |
thereby,mimicking |
R2634 |
T3931 |
T3891 |
advcl |
mimicking,reduced |
R2635 |
T3932 |
T3933 |
det |
the,situation |
R2636 |
T3933 |
T3931 |
dobj |
situation,mimicking |
R2637 |
T3934 |
T3931 |
prep |
in,mimicking |
R2638 |
T3935 |
T3936 |
amod |
human,patients |
R2639 |
T3936 |
T3934 |
pobj |
patients,in |
R2640 |
T3937 |
T3936 |
prep |
with,patients |
R2641 |
T3938 |
T3937 |
pobj |
TTD,with |
R2642 |
T3939 |
T3891 |
punct |
.,reduced |
R2643 |
T3941 |
T3942 |
prep |
In,observed |
R2644 |
T3943 |
T3941 |
pobj |
accordance,In |
R2645 |
T3944 |
T3943 |
prep |
with,accordance |
R2646 |
T3945 |
T3946 |
det |
the,dosage |
R2647 |
T3946 |
T3944 |
pobj |
dosage,with |
R2648 |
T3947 |
T3946 |
compound |
gene,dosage |
R2649 |
T3948 |
T3942 |
punct |
", ",observed |
R2650 |
T3949 |
T3950 |
det |
a,reduction |
R2651 |
T3950 |
T3942 |
nsubjpass |
reduction,observed |
R2652 |
T3951 |
T3950 |
amod |
further,reduction |
R2653 |
T3952 |
T3950 |
prep |
of,reduction |
R2654 |
T3953 |
T3954 |
quantmod |
up,70 |
R2655 |
T3954 |
T3956 |
nummod |
70,% |
R2656 |
T3955 |
T3954 |
quantmod |
to,70 |
R2657 |
T3956 |
T3952 |
pobj |
%,of |
R2658 |
T3957 |
T3956 |
prep |
of,% |
R2659 |
T3958 |
T3959 |
det |
the,level |
R2660 |
T3959 |
T3957 |
pobj |
level,of |
R2661 |
T3960 |
T3959 |
compound |
wt,level |
R2662 |
T3961 |
T3942 |
auxpass |
was,observed |
R2663 |
T3962 |
T3942 |
prep |
in,observed |
R2664 |
T3963 |
T3964 |
amod |
hemizygous,cells |
R2665 |
T3964 |
T3962 |
pobj |
cells,in |
R2666 |
T3965 |
T3966 |
compound |
XpdTTD,KO |
R2667 |
T3966 |
T3964 |
compound |
KO,cells |
R2668 |
T3967 |
T3966 |
punct |
/,KO |
R2669 |
T3968 |
T3942 |
punct |
.,observed |
R2670 |
T3970 |
T3971 |
advcl |
Consistent,was |
R2671 |
T3972 |
T3970 |
prep |
with,Consistent |
R2672 |
T3973 |
T3974 |
amod |
low,levels |
R2673 |
T3974 |
T3972 |
pobj |
levels,with |
R2674 |
T3975 |
T3976 |
compound |
mRNA,expression |
R2675 |
T3976 |
T3974 |
compound |
expression,levels |
R2676 |
T3977 |
T3971 |
punct |
", ",was |
R2677 |
T3978 |
T3979 |
preconj |
neither,allele |
R2678 |
T3979 |
T3971 |
nsubj |
allele,was |
R2679 |
T3980 |
T3981 |
det |
the,Xpd†XPCS |
R2680 |
T3981 |
T3979 |
nmod |
Xpd†XPCS,allele |
R2681 |
T3982 |
T3981 |
cc |
nor,Xpd†XPCS |
R2682 |
T3983 |
T3984 |
det |
the,Xpd†XP |
R2683 |
T3984 |
T3981 |
conj |
Xpd†XP,Xpd†XPCS |
R2684 |
T3985 |
T3971 |
acomp |
able,was |
R2685 |
T3986 |
T3987 |
aux |
to,restore |
R2686 |
T3987 |
T3985 |
xcomp |
restore,able |
R2687 |
T3988 |
T3989 |
compound |
TFIIH,abundance |
R2688 |
T3989 |
T3987 |
dobj |
abundance,restore |
R2689 |
T3990 |
T3987 |
prep |
to,restore |
R2690 |
T3991 |
T3992 |
compound |
wt,levels |
R2691 |
T3992 |
T3990 |
pobj |
levels,to |
R2692 |
T3993 |
T3987 |
prep |
in,restore |
R2693 |
T3994 |
T3995 |
compound |
XpdTTD,cells |
R2694 |
T3995 |
T3993 |
pobj |
cells,in |
R2695 |
T3996 |
T3995 |
compound |
compound,cells |
R2696 |
T3997 |
T3995 |
compound |
heterozygote,cells |
R2697 |
T3998 |
T3999 |
punct |
(,4E |
R2698 |
T3999 |
T3971 |
parataxis |
4E,was |
R2699 |
T4000 |
T3999 |
compound |
Figure,4E |
R2700 |
T4001 |
T3999 |
cc |
and,4E |
R2701 |
T4002 |
T3999 |
conj |
4F,4E |
R2702 |
T4003 |
T3999 |
punct |
),4E |
R2703 |
T4004 |
T3971 |
punct |
.,was |
R2704 |
T4006 |
T4007 |
advmod |
Thus,were |
R2705 |
T4008 |
T4007 |
punct |
", ",were |
R2706 |
T4009 |
T4010 |
det |
the,survival |
R2707 |
T4010 |
T4007 |
nsubj |
survival,were |
R2708 |
T4011 |
T4010 |
amod |
improved,survival |
R2709 |
T4012 |
T4010 |
compound |
UV,survival |
R2710 |
T4013 |
T4010 |
acl |
observed,survival |
R2711 |
T4014 |
T4013 |
prep |
in,observed |
R2712 |
T4015 |
T4016 |
compound |
compound,cells |
R2713 |
T4016 |
T4014 |
pobj |
cells,in |
R2714 |
T4017 |
T4016 |
compound |
heterozygote,cells |
R2715 |
T4018 |
T4019 |
punct |
(,4A |
R2716 |
T4019 |
T4013 |
parataxis |
4A,observed |
R2717 |
T4020 |
T4019 |
compound |
Figure,4A |
R2718 |
T4021 |
T4019 |
punct |
),4A |
R2719 |
T4022 |
T4013 |
cc |
and,observed |
R2720 |
T4023 |
T4024 |
advmod |
likely,rescue |
R2721 |
T4024 |
T4013 |
conj |
rescue,observed |
R2722 |
T4025 |
T4024 |
det |
the,rescue |
R2723 |
T4026 |
T4024 |
prep |
of,rescue |
R2724 |
T4027 |
T4028 |
compound |
TTD,symptoms |
R2725 |
T4028 |
T4026 |
pobj |
symptoms,of |
R2726 |
T4029 |
T4028 |
compound |
progeroid,symptoms |
R2727 |
T4030 |
T4031 |
punct |
(,Figure |
R2728 |
T4031 |
T4024 |
parataxis |
Figure,rescue |
R2729 |
T4032 |
T4031 |
nummod |
3,Figure |
R2730 |
T4033 |
T4031 |
punct |
),Figure |
R2731 |
T4034 |
T4007 |
neg |
not,were |
R2732 |
T4035 |
T4007 |
prep |
due,were |
R2733 |
T4036 |
T4035 |
pcomp |
to,due |
R2734 |
T4037 |
T4035 |
pobj |
normalisation,due |
R2735 |
T4038 |
T4037 |
prep |
of,normalisation |
R2736 |
T4039 |
T4040 |
compound |
TFIIH,levels |
R2737 |
T4040 |
T4038 |
pobj |
levels,of |
R2738 |
T4041 |
T4007 |
punct |
", ",were |
R2739 |
T4042 |
T4007 |
advcl |
suggesting,were |
R2740 |
T4043 |
T4044 |
advmod |
a,qualitative |
R2741 |
T4044 |
T4045 |
amod |
qualitative,effect |
R2742 |
T4045 |
T4042 |
dobj |
effect,suggesting |
R2743 |
T4046 |
T4047 |
advmod |
rather,than |
R2744 |
T4047 |
T4044 |
cc |
than,qualitative |
R2745 |
T4048 |
T4049 |
advmod |
a,quantitative |
R2746 |
T4049 |
T4044 |
conj |
quantitative,qualitative |
R2747 |
T4050 |
T4045 |
prep |
on,effect |
R2748 |
T4051 |
T4052 |
det |
these,phenotypes |
R2749 |
T4052 |
T4050 |
pobj |
phenotypes,on |
R2750 |
T4053 |
T4054 |
advmod |
in,vivo |
R2751 |
T4054 |
T4045 |
advmod |
vivo,effect |
R2752 |
T4055 |
T4007 |
punct |
.,were |
R2753 |
T4057 |
T4058 |
prep |
In,affect |
R2754 |
T4059 |
T4057 |
pobj |
contrast,In |
R2755 |
T4060 |
T4058 |
punct |
", ",affect |
R2756 |
T4061 |
T4062 |
det |
the,level |
R2757 |
T4062 |
T4058 |
nsubj |
level,affect |
R2758 |
T4063 |
T4062 |
prep |
of,level |
R2759 |
T4064 |
T4065 |
compound |
XPCS,expression |
R2760 |
T4065 |
T4063 |
pobj |
expression,of |
R2761 |
T4066 |
T4065 |
compound |
mRNA,expression |
R2762 |
T4067 |
T4058 |
aux |
did,affect |
R2763 |
T4068 |
T4069 |
det |
the,ability |
R2764 |
T4069 |
T4058 |
dobj |
ability,affect |
R2765 |
T4070 |
T4069 |
prep |
of,ability |
R2766 |
T4071 |
T4072 |
det |
the,protein |
R2767 |
T4072 |
T4070 |
pobj |
protein,of |
R2768 |
T4073 |
T4072 |
amod |
encoded,protein |
R2769 |
T4074 |
T4072 |
punct |
(,protein |
R2770 |
T4075 |
T4072 |
appos |
XPDG602D,protein |
R2771 |
T4076 |
T4069 |
punct |
),ability |
R2772 |
T4077 |
T4078 |
aux |
to,restore |
R2773 |
T4078 |
T4069 |
acl |
restore,ability |
R2774 |
T4079 |
T4080 |
det |
the,phenotype |
R2775 |
T4080 |
T4078 |
dobj |
phenotype,restore |
R2776 |
T4081 |
T4080 |
compound |
TTD,phenotype |
R2777 |
T4082 |
T4080 |
compound |
hair,phenotype |
R2778 |
T4083 |
T4078 |
prep |
to,restore |
R2779 |
T4084 |
T4083 |
amod |
normal,to |
R2780 |
T4085 |
T4058 |
punct |
.,affect |
R2781 |
T4087 |
T4088 |
advmod |
Notably,had |
R2782 |
T4089 |
T4088 |
punct |
", ",had |
R2783 |
T4090 |
T4091 |
compound |
XpdTTD, †XPCS |
R2784 |
T4091 |
T4093 |
compound |
†XPCS,animals |
R2785 |
T4092 |
T4091 |
punct |
/, †XPCS |
R2786 |
T4093 |
T4088 |
nsubj |
animals,had |
R2787 |
T4094 |
T4095 |
det |
a,phenotype |
R2788 |
T4095 |
T4088 |
dobj |
phenotype,had |
R2789 |
T4096 |
T4095 |
amod |
partial,phenotype |
R2790 |
T4097 |
T4095 |
compound |
TTD,phenotype |
R2791 |
T4098 |
T4095 |
compound |
hair,phenotype |
R2792 |
T4099 |
T4095 |
punct |
", ",phenotype |
R2793 |
T4100 |
T4095 |
acl |
correlating,phenotype |
R2794 |
T4101 |
T4100 |
prep |
with,correlating |
R2795 |
T4102 |
T4103 |
amod |
low,levels |
R2796 |
T4103 |
T4101 |
pobj |
levels,with |
R2797 |
T4104 |
T4103 |
prep |
of,levels |
R2798 |
T4105 |
T4106 |
compound |
Xpd†XPCS,expression |
R2799 |
T4106 |
T4104 |
pobj |
expression,of |
R2800 |
T4107 |
T4088 |
punct |
", ",had |
R2801 |
T4108 |
T4109 |
mark |
whereas,had |
R2802 |
T4109 |
T4088 |
advcl |
had,had |
R2803 |
T4110 |
T4111 |
compound |
XpdTTD,XPCS |
R2804 |
T4111 |
T4113 |
compound |
XPCS,animals |
R2805 |
T4112 |
T4111 |
punct |
/,XPCS |
R2806 |
T4113 |
T4109 |
nsubj |
animals,had |
R2807 |
T4114 |
T4115 |
compound |
wt,hair |
R2808 |
T4115 |
T4109 |
dobj |
hair,had |
R2809 |
T4116 |
T4115 |
punct |
", ",hair |
R2810 |
T4117 |
T4115 |
acl |
correlating,hair |
R2811 |
T4118 |
T4117 |
prep |
with,correlating |
R2827 |
T4134 |
T4088 |
punct |
.,had |
R2828 |
T4136 |
T4137 |
advmod |
Thus,affected |
R2829 |
T4138 |
T4137 |
punct |
", ",affected |
R2830 |
T4139 |
T4140 |
det |
the,range |
R2831 |
T4140 |
T4137 |
nsubj |
range,affected |
R2832 |
T4141 |
T4140 |
prep |
of,range |
R2833 |
T4142 |
T4143 |
compound |
expression,levels |
R2834 |
T4143 |
T4141 |
pobj |
levels,of |
R2835 |
T4144 |
T4140 |
prep |
from,range |
R2836 |
T4145 |
T4146 |
det |
these,alleles |
R2837 |
T4146 |
T4144 |
pobj |
alleles,from |
R2838 |
T4147 |
T4146 |
nummod |
two,alleles |
R2839 |
T4148 |
T4146 |
amod |
mutant,alleles |
R2840 |
T4149 |
T4150 |
poss |
their,ability |
R2841 |
T4150 |
T4137 |
dobj |
ability,affected |
R2842 |
T4151 |
T4152 |
aux |
to,complement |
R2843 |
T4152 |
T4150 |
acl |
complement,ability |
R2844 |
T4153 |
T4154 |
det |
some,phenotypes |
R2845 |
T4154 |
T4152 |
dobj |
phenotypes,complement |
R2846 |
T4155 |
T4156 |
punct |
(,hair |
R2847 |
T4156 |
T4154 |
parataxis |
hair,phenotypes |
R2848 |
T4157 |
T4156 |
punct |
),hair |
R2849 |
T4158 |
T4137 |
punct |
.,affected |
R2850 |
T4160 |
T4161 |
det |
An,overview |
R2851 |
T4161 |
T4162 |
nsubjpass |
overview,presented |
R2852 |
T4163 |
T4161 |
prep |
of,overview |
R2853 |
T4164 |
T4165 |
det |
the,relationships |
R2854 |
T4165 |
T4163 |
pobj |
relationships,of |
R2855 |
T4166 |
T4165 |
amod |
functional,relationships |
R2856 |
T4167 |
T4165 |
prep |
between,relationships |
R2857 |
T4168 |
T4169 |
compound |
Xpd,alleles |
R2858 |
T4169 |
T4167 |
pobj |
alleles,between |
R2859 |
T4170 |
T4169 |
punct |
", ",alleles |
R2860 |
T4171 |
T4169 |
conj |
phenotypes,alleles |
R2861 |
T4172 |
T4171 |
punct |
", ",phenotypes |
R2862 |
T4173 |
T4171 |
cc |
and,phenotypes |
R2863 |
T4174 |
T4175 |
det |
the,function |
R2864 |
T4175 |
T4171 |
conj |
function,phenotypes |
R2865 |
T4176 |
T4175 |
amod |
presumed,function |
R2866 |
T4177 |
T4175 |
amod |
underlying,function |
R2867 |
T4178 |
T4175 |
compound |
TFIIH,function |
R2868 |
T4179 |
T4165 |
prep |
in,relationships |
R2869 |
T4180 |
T4179 |
pobj |
mice,in |
R2870 |
T4181 |
T4180 |
cc |
and,mice |
R2871 |
T4182 |
T4180 |
conj |
cells,mice |
R2872 |
T4183 |
T4162 |
auxpass |
is,presented |
R2873 |
T4184 |
T4162 |
prep |
in,presented |
R2874 |
T4185 |
T4184 |
pobj |
Table,in |
R2875 |
T4186 |
T4185 |
nummod |
2,Table |
R2876 |
T4187 |
T4162 |
punct |
.,presented |
R2877 |
T4260 |
T4259 |
prep |
of,Dissection |
R2878 |
T4261 |
T4262 |
amod |
Biallelic,Effects |
R2879 |
T4262 |
T4260 |
pobj |
Effects,of |
R2880 |
T4263 |
T4259 |
prep |
from,Dissection |
R2881 |
T4264 |
T4265 |
amod |
other,Determinants |
R2882 |
T4265 |
T4263 |
pobj |
Determinants,from |
R2883 |
T4266 |
T4265 |
prep |
of,Determinants |
R2884 |
T4267 |
T4266 |
pobj |
Phenotype,of |
R2885 |
T4269 |
T4270 |
mark |
Although,postulated |
R2886 |
T4270 |
T4293 |
advcl |
postulated,been |
R2887 |
T4271 |
T4272 |
amod |
phenotypic,consequences |
R2888 |
T4272 |
T4270 |
nsubjpass |
consequences,postulated |
R2889 |
T4273 |
T4272 |
punct |
", ",consequences |
R2890 |
T4274 |
T4272 |
acl |
referred,consequences |
R2891 |
T4275 |
T4274 |
prep |
to,referred |
R2892 |
T4276 |
T4274 |
advmod |
here,referred |
R2893 |
T4277 |
T4274 |
prep |
as,referred |
R2894 |
T4278 |
T4279 |
amod |
biallelic,effects |
R2895 |
T4279 |
T4277 |
pobj |
effects,as |
R2896 |
T4280 |
T4272 |
punct |
", ",consequences |
R2897 |
T4281 |
T4272 |
acl |
resulting,consequences |
R2898 |
T4282 |
T4281 |
prep |
from,resulting |
R2899 |
T4283 |
T4284 |
nummod |
two,alleles |
R2900 |
T4284 |
T4282 |
pobj |
alleles,from |
R2901 |
T4285 |
T4284 |
amod |
different,alleles |
R2902 |
T4286 |
T4284 |
amod |
mutant,alleles |
R2903 |
T4287 |
T4284 |
prep |
in,alleles |
R2904 |
T4288 |
T4289 |
compound |
compound,patients |
R2905 |
T4289 |
T4287 |
pobj |
patients,in |
R2906 |
T4290 |
T4289 |
compound |
heterozygote,patients |
R2907 |
T4291 |
T4270 |
aux |
have,postulated |
R2908 |
T4292 |
T4270 |
auxpass |
been,postulated |
R2909 |
T4294 |
T4293 |
punct |
", ",been |
R2910 |
T4295 |
T4296 |
amod |
such,effects |
R2911 |
T4296 |
T4293 |
nsubj |
effects,been |
R2912 |
T4297 |
T4293 |
aux |
have,been |
R2913 |
T4298 |
T4293 |
advmod |
historically,been |
R2914 |
T4299 |
T4293 |
acomp |
difficult,been |
R2915 |
T4300 |
T4301 |
aux |
to,distinguish |
R2916 |
T4301 |
T4299 |
xcomp |
distinguish,difficult |
R2917 |
T4302 |
T4301 |
prep |
from,distinguish |
R2918 |
T4303 |
T4304 |
det |
the,influence |
R2919 |
T4304 |
T4302 |
pobj |
influence,from |
R2920 |
T4305 |
T4304 |
prep |
of,influence |
R2921 |
T4306 |
T4305 |
pobj |
environment,of |
R2922 |
T4307 |
T4306 |
cc |
and,environment |
R2923 |
T4308 |
T4309 |
amod |
genetic,background |
R2924 |
T4309 |
T4306 |
conj |
background,environment |
R2925 |
T4310 |
T4293 |
punct |
.,been |
R2926 |
T4312 |
T4313 |
nsubj |
We,used |
R2927 |
T4314 |
T4315 |
det |
a,system |
R2928 |
T4315 |
T4313 |
dobj |
system,used |
R2929 |
T4316 |
T4317 |
advmod |
genetically,defined |
R2930 |
T4317 |
T4315 |
amod |
defined,system |
R2931 |
T4318 |
T4315 |
amod |
mammalian,system |
R2932 |
T4319 |
T4315 |
compound |
model,system |
R2933 |
T4320 |
T4313 |
prep |
under,used |
R2934 |
T4321 |
T4322 |
amod |
controlled,conditions |
R2935 |
T4322 |
T4320 |
pobj |
conditions,under |
R2936 |
T4323 |
T4322 |
amod |
environmental,conditions |
R2937 |
T4324 |
T4325 |
aux |
to,reveal |
R2938 |
T4325 |
T4313 |
advcl |
reveal,used |
R2939 |
T4326 |
T4327 |
amod |
phenotypic,effects |
R2940 |
T4327 |
T4325 |
dobj |
effects,reveal |
R2941 |
T4328 |
T4327 |
amod |
attributable,effects |
R2942 |
T4329 |
T4330 |
advmod |
specifically,to |
R2943 |
T4330 |
T4328 |
prep |
to,attributable |
R2944 |
T4331 |
T4330 |
pobj |
combinations,to |
R2945 |
T4332 |
T4331 |
prep |
of,combinations |
R2946 |
T4333 |
T4334 |
advmod |
differentially,mutated |
R2947 |
T4334 |
T4335 |
amod |
mutated,alleles |
R2948 |
T4335 |
T4332 |
pobj |
alleles,of |
R2949 |
T4336 |
T4335 |
compound |
Xpd,alleles |
R2950 |
T4337 |
T4313 |
punct |
.,used |
R2951 |
T4339 |
T4340 |
det |
The,effects |
R2952 |
T4340 |
T4343 |
nsubj |
effects,were |
R2953 |
T4341 |
T4340 |
amod |
observed,effects |
R2954 |
T4342 |
T4340 |
amod |
biallelic,effects |
R2955 |
T4344 |
T4343 |
prep |
of,were |
R2956 |
T4345 |
T4346 |
nummod |
three,types |
R2957 |
T4346 |
T4344 |
pobj |
types,of |
R2958 |
T4347 |
T4346 |
amod |
general,types |
R2959 |
T4348 |
T4343 |
punct |
.,were |
R2960 |
T4350 |
T4351 |
prep |
In,determined |
R2961 |
T4352 |
T4353 |
det |
the,first |
R2962 |
T4353 |
T4350 |
pobj |
first,In |
R2963 |
T4354 |
T4351 |
punct |
", ",determined |
R2964 |
T4355 |
T4356 |
det |
the,allele |
R2965 |
T4356 |
T4351 |
nsubj |
allele,determined |
R2966 |
T4357 |
T4356 |
acl |
associated,allele |
R2967 |
T4358 |
T4357 |
prep |
in,associated |
R2968 |
T4359 |
T4360 |
det |
a,state |
R2969 |
T4360 |
T4358 |
pobj |
state,in |
R2970 |
T4361 |
T4360 |
amod |
homozygous,state |
R2971 |
T4362 |
T4357 |
prep |
with,associated |
R2972 |
T4363 |
T4364 |
det |
a,phenotype |
R2973 |
T4364 |
T4362 |
pobj |
phenotype,with |
R2974 |
T4365 |
T4366 |
advmod |
closer,to |
R2975 |
T4366 |
T4364 |
amod |
to,phenotype |
R2976 |
T4367 |
T4366 |
pobj |
wt,to |
R2977 |
T4368 |
T4351 |
advmod |
singularly,determined |
R2978 |
T4369 |
T4370 |
det |
the,outcome |
R2979 |
T4370 |
T4351 |
dobj |
outcome,determined |
R2980 |
T4371 |
T4370 |
amod |
phenotypic,outcome |
R2981 |
T4372 |
T4351 |
punct |
", ",determined |
R2982 |
T4373 |
T4374 |
det |
a,phenomenon |
R2983 |
T4374 |
T4351 |
npadvmod |
phenomenon,determined |
R2984 |
T4375 |
T4376 |
advmod |
widely,known |
R2985 |
T4376 |
T4374 |
acl |
known,phenomenon |
R2986 |
T4377 |
T4376 |
prep |
in,known |
R2987 |
T4378 |
T4379 |
amod |
human,disease |
R2988 |
T4379 |
T4377 |
pobj |
disease,in |
R2989 |
T4380 |
T4379 |
amod |
recessive,disease |
R2990 |
T4381 |
T4351 |
punct |
.,determined |
R2991 |
T4383 |
T4384 |
mark |
Because,functioned |
R2992 |
T4384 |
T4388 |
advcl |
functioned,call |
R2993 |
T4385 |
T4386 |
det |
these,alleles |
R2994 |
T4386 |
T4384 |
nsubj |
alleles,functioned |
R2995 |
T4387 |
T4386 |
compound |
Xpd,alleles |
R2996 |
T4389 |
T4384 |
prep |
at,functioned |
R2997 |
T4390 |
T4389 |
cc |
or,at |
R2998 |
T4391 |
T4389 |
conj |
near,at |
R2999 |
T4392 |
T4393 |
compound |
wt,levels |
R3000 |
T4393 |
T4391 |
pobj |
levels,near |
R3001 |
T4394 |
T4384 |
prep |
with,functioned |
R3002 |
T4395 |
T4394 |
pobj |
respect,with |
R3003 |
T4396 |
T4395 |
prep |
to,respect |
R3004 |
T4397 |
T4398 |
det |
a,function |
R3005 |
T4398 |
T4396 |
pobj |
function,to |
R3006 |
T4399 |
T4398 |
amod |
particular,function |
R3007 |
T4400 |
T4388 |
punct |
", ",call |
R3008 |
T4401 |
T4388 |
nsubj |
we,call |
R3009 |
T4402 |
T4403 |
det |
these,effects |
R3010 |
T4403 |
T4388 |
dobj |
effects,call |
R3011 |
T4404 |
T4388 |
punct |
“,call |
R3012 |
T4405 |
T4388 |
oprd |
dominant,call |
R3013 |
T4406 |
T4388 |
punct |
”,call |
R3014 |
T4407 |
T4388 |
punct |
.,call |
R3015 |
T4409 |
T4410 |
amod |
Such,alleles |
R3016 |
T4410 |
T4411 |
nsubjpass |
alleles,referred |
R3017 |
T4412 |
T4411 |
aux |
can,referred |
R3018 |
T4413 |
T4411 |
advmod |
also,referred |
R3019 |
T4414 |
T4411 |
auxpass |
be,referred |
R3020 |
T4415 |
T4411 |
prep |
to,referred |
R3021 |
T4416 |
T4411 |
prep |
as,referred |
R3022 |
T4417 |
T4418 |
punct |
“,alleles |
R3023 |
T4418 |
T4416 |
pobj |
alleles,as |
R3024 |
T4419 |
T4418 |
nmod |
separation,alleles |
R3025 |
T4420 |
T4419 |
prep |
of,separation |
R3026 |
T4421 |
T4420 |
pobj |
function,of |
R3027 |
T4422 |
T4418 |
punct |
”,alleles |
R3028 |
T4423 |
T4411 |
punct |
", ",referred |
R3029 |
T4424 |
T4425 |
mark |
because,allow |
R3030 |
T4425 |
T4411 |
advcl |
allow,referred |
R3031 |
T4426 |
T4425 |
nsubj |
they,allow |
R3032 |
T4427 |
T4425 |
dobj |
dissection,allow |
R3033 |
T4428 |
T4427 |
prep |
of,dissection |
R3034 |
T4429 |
T4430 |
det |
the,roles |
R3035 |
T4430 |
T4428 |
pobj |
roles,of |
R3036 |
T4431 |
T4430 |
prep |
of,roles |
R3037 |
T4432 |
T4433 |
amod |
multifunctional,proteins |
R3038 |
T4433 |
T4431 |
pobj |
proteins,of |
R3039 |
T4434 |
T4425 |
prep |
in,allow |
R3040 |
T4435 |
T4436 |
amod |
specific,phenotypes |
R3041 |
T4436 |
T4434 |
pobj |
phenotypes,in |
R3042 |
T4437 |
T4411 |
punct |
.,referred |
R3043 |
T4439 |
T4440 |
advmod |
Secondly,was |
R3044 |
T4441 |
T4440 |
punct |
", ",was |
R3045 |
T4442 |
T4440 |
dep |
highlighting,was |
R3046 |
T4443 |
T4444 |
det |
the,relevance |
R3047 |
T4444 |
T4442 |
dobj |
relevance,highlighting |
R3048 |
T4445 |
T4444 |
amod |
potential,relevance |
R3049 |
T4446 |
T4444 |
prep |
of,relevance |
R3050 |
T4447 |
T4448 |
amod |
current,findings |
R3051 |
T4448 |
T4446 |
pobj |
findings,of |
R3052 |
T4449 |
T4444 |
prep |
to,relevance |
R3053 |
T4450 |
T4451 |
det |
all,organisms |
R3054 |
T4451 |
T4449 |
pobj |
organisms,to |
R3055 |
T4452 |
T4451 |
amod |
diploid,organisms |
R3056 |
T4453 |
T4451 |
prep |
including,organisms |
R3057 |
T4454 |
T4453 |
pobj |
humans,including |
R3058 |
T4455 |
T4456 |
det |
the,observation |
R3059 |
T4456 |
T4440 |
nsubj |
observation,was |
R3060 |
T4457 |
T4458 |
mark |
that,shift |
R3061 |
T4458 |
T4456 |
acl |
shift,observation |
R3062 |
T4459 |
T4458 |
prep |
in,shift |
R3063 |
T4460 |
T4461 |
nummod |
one,animal |
R3064 |
T4461 |
T4459 |
pobj |
animal,in |
R3065 |
T4462 |
T4461 |
nmod |
compound,animal |
R3066 |
T4463 |
T4461 |
amod |
heterozygous,animal |
R3067 |
T4464 |
T4458 |
punct |
", ",shift |
R3068 |
T4465 |
T4466 |
det |
the,relationship |
R3069 |
T4466 |
T4458 |
nsubj |
relationship,shift |
R3070 |
T4467 |
T4466 |
nmod |
Xpd,relationship |
R3071 |
T4468 |
T4466 |
amod |
allelic,relationship |
R3072 |
T4469 |
T4458 |
aux |
could,shift |
R3073 |
T4470 |
T4458 |
prep |
from,shift |
R3074 |
T4471 |
T4472 |
amod |
A dominant,a recessive |
R3075 |
T4472 |
T4470 |
pobj |
a recessive,from |
R3076 |
T4473 |
T4472 |
punct |
|,a recessive |
R3077 |
T4474 |
T4470 |
prep |
to,from |
R3078 |
T4475 |
T4476 |
amod |
A recessive,a dominant |
R3079 |
T4476 |
T4474 |
pobj |
a dominant,to |
R3080 |
T4477 |
T4476 |
punct |
|,a dominant |
R3081 |
T4478 |
T4458 |
prep |
with,shift |
R3082 |
T4479 |
T4478 |
pobj |
respect,with |
R3083 |
T4480 |
T4479 |
prep |
to,respect |
R3084 |
T4481 |
T4482 |
amod |
different,phenotypes |
R3085 |
T4482 |
T4480 |
pobj |
phenotypes,to |
R3086 |
T4483 |
T4458 |
prep |
in,shift |
R3087 |
T4484 |
T4485 |
det |
a,manner |
R3088 |
T4485 |
T4483 |
pobj |
manner,in |
R3089 |
T4486 |
T4487 |
npadvmod |
time,dependent |
R3090 |
T4487 |
T4485 |
amod |
dependent,manner |
R3091 |
T4488 |
T4487 |
punct |
-,dependent |
R3092 |
T4489 |
T4487 |
cc |
and,dependent |
R3093 |
T4490 |
T4491 |
npadvmod |
tissue,specific |
R3094 |
T4491 |
T4487 |
conj |
specific,dependent |
R3095 |
T4492 |
T4491 |
punct |
-,specific |
R3096 |
T4493 |
T4494 |
punct |
(,see |
R3097 |
T4494 |
T4458 |
parataxis |
see,shift |
R3098 |
T4495 |
T4496 |
advmod |
below,Table |
R3099 |
T4496 |
T4494 |
dobj |
Table,see |
R3100 |
T4497 |
T4496 |
cc |
and,Table |
R3101 |
T4498 |
T4496 |
nummod |
2,Table |
R3102 |
T4499 |
T4494 |
punct |
),see |
R3103 |
T4500 |
T4440 |
punct |
.,was |
R3104 |
T4502 |
T4503 |
prep |
In,produced |
R3105 |
T4504 |
T4505 |
det |
the,type |
R3106 |
T4505 |
T4502 |
pobj |
type,In |
R3107 |
T4506 |
T4505 |
amod |
third,type |
R3108 |
T4507 |
T4505 |
prep |
of,type |
R3109 |
T4508 |
T4509 |
amod |
biallelic,effect |
R3110 |
T4509 |
T4507 |
pobj |
effect,of |
R3111 |
T4510 |
T4505 |
punct |
", ",type |
R3112 |
T4511 |
T4505 |
acl |
known,type |
R3113 |
T4512 |
T4511 |
prep |
as,known |
R3114 |
T4513 |
T4514 |
amod |
interallelic,complementation |
R3115 |
T4514 |
T4512 |
pobj |
complementation,as |
R3116 |
T4515 |
T4503 |
punct |
", ",produced |
R3117 |
T4516 |
T4517 |
nummod |
two,alleles |
R3118 |
T4517 |
T4503 |
nsubj |
alleles,produced |
R3119 |
T4518 |
T4517 |
amod |
mutant,alleles |
R3120 |
T4519 |
T4520 |
det |
a,phenotype |
R3121 |
T4520 |
T4503 |
dobj |
phenotype,produced |
R3122 |
T4521 |
T4522 |
advmod |
closer,to |
R3123 |
T4522 |
T4520 |
amod |
to,phenotype |
R3124 |
T4523 |
T4522 |
pobj |
wt,to |
R3125 |
T4524 |
T4525 |
mark |
than,alone |
R3126 |
T4525 |
T4522 |
advcl |
alone,to |
R3127 |
T4526 |
T4525 |
nsubj |
either,alone |
R3128 |
T4527 |
T4525 |
aux |
could,alone |
R3129 |
T4528 |
T4525 |
prep |
in,alone |
R3130 |
T4529 |
T4530 |
det |
a,state |
R3131 |
T4530 |
T4528 |
pobj |
state,in |
R3132 |
T4531 |
T4532 |
advmod |
homo,hemizygous |
R3133 |
T4532 |
T4530 |
amod |
hemizygous,state |
R3134 |
T4533 |
T4532 |
punct |
-,hemizygous |
R3135 |
T4534 |
T4532 |
cc |
or,hemizygous |
R3136 |
T4535 |
T4503 |
punct |
.,produced |
R3137 |
T4537 |
T4538 |
mark |
As,summarised |
R3138 |
T4538 |
T4539 |
advcl |
summarised,observed |
R3139 |
T4540 |
T4538 |
prep |
in,summarised |
R3140 |
T4541 |
T4540 |
pobj |
Table,in |
R3141 |
T4542 |
T4541 |
nummod |
2,Table |
R3142 |
T4543 |
T4539 |
punct |
", ",observed |
R3143 |
T4544 |
T4539 |
nsubjpass |
examples,observed |
R3144 |
T4545 |
T4544 |
prep |
of,examples |
R3145 |
T4546 |
T4547 |
det |
all,types |
R3146 |
T4547 |
T4545 |
pobj |
types,of |
R3147 |
T4548 |
T4547 |
prep |
of,types |
R3148 |
T4549 |
T4550 |
amod |
biallelic,effects |
R3149 |
T4550 |
T4548 |
pobj |
effects,of |
R3150 |
T4551 |
T4539 |
auxpass |
were,observed |
R3151 |
T4552 |
T4539 |
prep |
in,observed |
R3152 |
T4553 |
T4554 |
det |
a,variety |
R3153 |
T4554 |
T4552 |
pobj |
variety,in |
R3154 |
T4555 |
T4554 |
prep |
of,variety |
R3155 |
T4556 |
T4557 |
npadvmod |
Xpd,associated |
R3156 |
T4557 |
T4559 |
amod |
associated,phenotypes |
R3157 |
T4558 |
T4557 |
punct |
-,associated |
R3158 |
T4559 |
T4555 |
pobj |
phenotypes,of |
R3159 |
T4560 |
T4554 |
punct |
", ",variety |
R3160 |
T4561 |
T4554 |
acl |
ranging,variety |
R3161 |
T4562 |
T4561 |
prep |
from,ranging |
R3162 |
T4563 |
T4564 |
amod |
brittle,hair |
R3163 |
T4564 |
T4562 |
pobj |
hair,from |
R3164 |
T4565 |
T4562 |
prep |
to,from |
R3165 |
T4566 |
T4567 |
amod |
segmental,progeria |
R3166 |
T4567 |
T4565 |
pobj |
progeria,to |
R3167 |
T4568 |
T4539 |
punct |
.,observed |
R3180 |
T4806 |
T4805 |
prep |
in,TFIIH |
R3181 |
T4807 |
T4806 |
pobj |
Transcription,in |
R3182 |
T4808 |
T4807 |
cc |
and,Transcription |
R3183 |
T4809 |
T4807 |
conj |
Repair,Transcription |
R3184 |
T4810 |
T4805 |
punct |
: ,TFIIH |
R3185 |
T4811 |
T4805 |
appos |
Mechanisms,TFIIH |
R3186 |
T4812 |
T4811 |
prep |
of,Mechanisms |
R3187 |
T4813 |
T4814 |
compound |
XPD,Pleiotropy |
R3188 |
T4814 |
T4812 |
pobj |
Pleiotropy,of |
R3189 |
T4815 |
T4814 |
compound |
Disease,Pleiotropy |
R3190 |
T4817 |
T4818 |
nsubj |
We,observed |
R3191 |
T4819 |
T4818 |
dobj |
differences,observed |
R3192 |
T4820 |
T4819 |
prep |
in,differences |
R3193 |
T4821 |
T4822 |
det |
the,ability |
R3194 |
T4822 |
T4820 |
pobj |
ability,in |
R3195 |
T4823 |
T4822 |
prep |
of,ability |
R3196 |
T4824 |
T4823 |
pobj |
XpdTTD,of |
R3197 |
T4825 |
T4824 |
cc |
versus,XpdTTD |
R3198 |
T4826 |
T4827 |
amod |
homozygous,alleles |
R3199 |
T4827 |
T4824 |
conj |
alleles,XpdTTD |
R3200 |
T4828 |
T4827 |
amod |
lethal,alleles |
R3201 |
T4829 |
T4827 |
nmod |
Xpd†XPCS,alleles |
R3202 |
T4830 |
T4829 |
cc |
and,Xpd†XPCS |
R3203 |
T4831 |
T4829 |
conj |
Xpd†XP,Xpd†XPCS |
R3204 |
T4832 |
T4833 |
aux |
to,function |
R3205 |
T4833 |
T4822 |
acl |
function,ability |
R3206 |
T4834 |
T4833 |
prep |
in,function |
R3207 |
T4835 |
T4836 |
nummod |
two,phenotypes |
R3208 |
T4836 |
T4834 |
pobj |
phenotypes,in |
R3209 |
T4837 |
T4838 |
npadvmod |
transcription,related |
R3210 |
T4838 |
T4836 |
amod |
related,phenotypes |
R3211 |
T4839 |
T4838 |
punct |
-,related |
R3212 |
T4840 |
T4836 |
acl |
separated,phenotypes |
R3213 |
T4841 |
T4840 |
prep |
in,separated |
R3214 |
T4842 |
T4843 |
det |
the,organism |
R3215 |
T4843 |
T4841 |
pobj |
organism,in |
R3216 |
T4844 |
T4840 |
prep |
by,separated |
R3217 |
T4845 |
T4846 |
preconj |
both,time |
R3218 |
T4846 |
T4844 |
pobj |
time,by |
R3219 |
T4847 |
T4846 |
cc |
and,time |
R3220 |
T4848 |
T4846 |
conj |
space,time |
R3221 |
T4849 |
T4819 |
punct |
: ,differences |
R3222 |
T4850 |
T4851 |
amod |
embryonic,lethality |
R3223 |
T4851 |
T4819 |
appos |
lethality,differences |
R3224 |
T4852 |
T4851 |
cc |
and,lethality |
R3225 |
T4853 |
T4854 |
amod |
terminal,differentiation |
R3226 |
T4854 |
T4851 |
conj |
differentiation,lethality |
R3227 |
T4855 |
T4854 |
prep |
of,differentiation |
R3228 |
T4856 |
T4857 |
amod |
enucleating,skin |
R3229 |
T4857 |
T4855 |
pobj |
skin,of |
R3230 |
T4858 |
T4857 |
cc |
and,skin |
R3231 |
T4859 |
T4860 |
compound |
blood,cells |
R3232 |
T4860 |
T4857 |
conj |
cells,skin |
R3233 |
T4861 |
T4818 |
punct |
.,observed |
R3234 |
T4863 |
T4864 |
det |
The,lethality |
R3235 |
T4864 |
T4869 |
nsubj |
lethality,reflects |
R3236 |
T4865 |
T4866 |
nmod |
preblastocyst,stage |
R3237 |
T4866 |
T4864 |
nmod |
stage,lethality |
R3238 |
T4867 |
T4866 |
punct |
-,stage |
R3239 |
T4868 |
T4864 |
amod |
homozygous,lethality |
R3240 |
T4870 |
T4864 |
acl |
shared,lethality |
R3241 |
T4871 |
T4870 |
agent |
by,shared |
R3242 |
T4872 |
T4873 |
det |
the,alleles |
R3243 |
T4873 |
T4871 |
pobj |
alleles,by |
R3244 |
T4874 |
T4873 |
nmod |
XpdKO,alleles |
R3245 |
T4875 |
T4874 |
punct |
", ",XpdKO |
R3246 |
T4876 |
T4874 |
conj |
Xpd†XPCS,XpdKO |
R3247 |
T4877 |
T4876 |
punct |
", ",Xpd†XPCS |
R3248 |
T4878 |
T4876 |
cc |
and,Xpd†XPCS |
R3249 |
T4879 |
T4876 |
conj |
Xpd†XP,Xpd†XPCS |
R3250 |
T4880 |
T4881 |
advmod |
most,likely |
R3251 |
T4881 |
T4869 |
advmod |
likely,reflects |
R3252 |
T4882 |
T4883 |
det |
a,defect |
R3253 |
T4883 |
T4869 |
dobj |
defect,reflects |
R3254 |
T4884 |
T4883 |
prep |
in,defect |
R3255 |
T4885 |
T4886 |
amod |
basal,transcription |
R3256 |
T4886 |
T4884 |
pobj |
transcription,in |
R3257 |
T4887 |
T4888 |
dep |
that,is |
R3258 |
T4888 |
T4883 |
relcl |
is,defect |
R3259 |
T4889 |
T4888 |
acomp |
incompatible,is |
R3260 |
T4890 |
T4889 |
prep |
with,incompatible |
R3261 |
T4891 |
T4890 |
pobj |
life,with |
R3262 |
T4892 |
T4869 |
punct |
.,reflects |
R3263 |
T4894 |
T4895 |
prep |
In,rescued |
R3264 |
T4896 |
T4897 |
nmod |
XpdTTD, †XPCS |
R3265 |
T4897 |
T4899 |
nmod |
†XPCS,mice |
R3266 |
T4898 |
T4897 |
punct |
/, †XPCS |
R3267 |
T4899 |
T4894 |
pobj |
mice,In |
R3268 |
T4900 |
T4897 |
cc |
and, †XPCS |
R3269 |
T4901 |
T4902 |
compound |
XpdTTD, †XP |
R3270 |
T4902 |
T4897 |
conj |
†XP, †XPCS |
R3271 |
T4903 |
T4902 |
punct |
/, †XP |
R3272 |
T4904 |
T4899 |
nmod |
compound,mice |
R3273 |
T4905 |
T4899 |
amod |
heterozygous,mice |
R3274 |
T4906 |
T4895 |
punct |
", ",rescued |
R3275 |
T4907 |
T4908 |
amod |
embryonic,lethality |
R3276 |
T4908 |
T4895 |
nsubjpass |
lethality,rescued |
R3277 |
T4909 |
T4895 |
auxpass |
was,rescued |
R3278 |
T4910 |
T4895 |
advmod |
fully,rescued |
R3279 |
T4911 |
T4895 |
agent |
by,rescued |
R3280 |
T4912 |
T4913 |
det |
the,allele |
R3281 |
T4913 |
T4911 |
pobj |
allele,by |
R3282 |
T4914 |
T4913 |
compound |
XpdTTD,allele |
R3283 |
T4915 |
T4895 |
punct |
.,rescued |
R3284 |
T4917 |
T4918 |
mark |
Because,rescued |
R3285 |
T4918 |
T4924 |
advcl |
rescued,considered |
R3286 |
T4919 |
T4920 |
amod |
embryonic,lethality |
R3287 |
T4920 |
T4918 |
nsubjpass |
lethality,rescued |
R3288 |
T4921 |
T4918 |
auxpass |
was,rescued |
R3289 |
T4922 |
T4918 |
advmod |
also,rescued |
R3290 |
T4923 |
T4918 |
advmod |
fully,rescued |
R3291 |
T4925 |
T4918 |
prep |
in,rescued |
R3292 |
T4926 |
T4927 |
nmod |
XpdTTD,KO |
R3293 |
T4927 |
T4929 |
nmod |
KO,mice |
R3294 |
T4928 |
T4927 |
punct |
/,KO |
R3295 |
T4929 |
T4925 |
pobj |
mice,in |
R3296 |
T4930 |
T4929 |
amod |
hemizygous,mice |
R3297 |
T4931 |
T4924 |
punct |
", ",considered |
R3298 |
T4932 |
T4933 |
det |
the,allele |
R3299 |
T4933 |
T4924 |
nsubjpass |
allele,considered |
R3300 |
T4934 |
T4933 |
compound |
XpdTTD,allele |
R3301 |
T4935 |
T4924 |
aux |
can,considered |
R3302 |
T4936 |
T4924 |
auxpass |
be,considered |
R3303 |
T4937 |
T4924 |
prep |
as,considered |
R3304 |
T4938 |
T4937 |
pobj |
wt,as |
R3305 |
T4939 |
T4938 |
cc |
and,wt |
R3306 |
T4940 |
T4941 |
advmod |
thus,dominant |
R3307 |
T4941 |
T4938 |
conj |
dominant,wt |
R3308 |
T4942 |
T4941 |
prep |
to,dominant |
R3309 |
T4943 |
T4942 |
pobj |
each,to |
R3310 |
T4944 |
T4943 |
prep |
of,each |
R3311 |
T4945 |
T4946 |
det |
the,alleles |
R3312 |
T4946 |
T4944 |
pobj |
alleles,of |
R3313 |
T4947 |
T4946 |
amod |
homozygous,alleles |
R3314 |
T4948 |
T4946 |
amod |
lethal,alleles |
R3315 |
T4949 |
T4950 |
punct |
(,XpdKO |
R3316 |
T4950 |
T4946 |
parataxis |
XpdKO,alleles |
R3317 |
T4951 |
T4950 |
punct |
", ",XpdKO |
R3318 |
T4952 |
T4950 |
conj |
Xpd†XPCS,XpdKO |
R3319 |
T4953 |
T4952 |
punct |
", ",Xpd†XPCS |
R3320 |
T4954 |
T4952 |
cc |
and,Xpd†XPCS |
R3321 |
T4955 |
T4952 |
conj |
Xpd†XP,Xpd†XPCS |
R3322 |
T4956 |
T4950 |
punct |
),XpdKO |
R3323 |
T4957 |
T4941 |
prep |
with,dominant |
R3324 |
T4958 |
T4957 |
pobj |
respect,with |
R3325 |
T4959 |
T4958 |
prep |
to,respect |
R3326 |
T4960 |
T4961 |
det |
this,phenotype |
R3327 |
T4961 |
T4959 |
pobj |
phenotype,to |
R3328 |
T4962 |
T4961 |
amod |
particular,phenotype |
R3329 |
T4963 |
T4964 |
punct |
(,Table |
R3330 |
T4964 |
T4924 |
parataxis |
Table,considered |
R3331 |
T4965 |
T4964 |
nummod |
2,Table |
R3332 |
T4966 |
T4964 |
punct |
),Table |
R3333 |
T4967 |
T4924 |
punct |
.,considered |
R3334 |
T4969 |
T4970 |
npadvmod |
TTD,specific |
R3335 |
T4970 |
T4972 |
amod |
specific,features |
R3336 |
T4971 |
T4970 |
punct |
-,specific |
R3337 |
T4972 |
T4976 |
nsubjpass |
features,thought |
R3338 |
T4973 |
T4972 |
amod |
cutaneous,features |
R3339 |
T4974 |
T4973 |
cc |
and,cutaneous |
R3340 |
T4975 |
T4973 |
conj |
anaemic,cutaneous |
R3341 |
T4977 |
T4976 |
punct |
", ",thought |
R3342 |
T4978 |
T4976 |
prep |
on,thought |
R3343 |
T4979 |
T4980 |
det |
the,hand |
R3344 |
T4980 |
T4978 |
pobj |
hand,on |
R3345 |
T4981 |
T4980 |
amod |
other,hand |
R3346 |
T4982 |
T4976 |
punct |
", ",thought |
R3347 |
T4983 |
T4976 |
auxpass |
are,thought |
R3348 |
T4984 |
T4985 |
aux |
to,result |
R3349 |
T4985 |
T4976 |
xcomp |
result,thought |
R3350 |
T4986 |
T4985 |
prep |
from,result |
R3351 |
T4987 |
T4988 |
det |
a,kind |
R3352 |
T4988 |
T4986 |
pobj |
kind,from |
R3353 |
T4989 |
T4988 |
amod |
specific,kind |
R3354 |
T4990 |
T4988 |
prep |
of,kind |
R3355 |
T4991 |
T4992 |
amod |
transcriptional,insufficiency |
R3356 |
T4992 |
T4990 |
pobj |
insufficiency,of |
R3357 |
T4993 |
T4988 |
acl |
caused,kind |
R3358 |
T4994 |
T4993 |
agent |
by,caused |
R3359 |
T4995 |
T4994 |
pobj |
depletion,by |
R3360 |
T4996 |
T4995 |
prep |
of,depletion |
R3361 |
T4997 |
T4998 |
amod |
unstable,TFIIH |
R3362 |
T4998 |
T4996 |
pobj |
TFIIH,of |
R3363 |
T4999 |
T4995 |
prep |
during,depletion |
R3364 |
T5000 |
T5001 |
det |
the,differentiation |
R3365 |
T5001 |
T4999 |
pobj |
differentiation,during |
R3366 |
T5002 |
T5001 |
amod |
terminal,differentiation |
R3367 |
T5003 |
T5001 |
prep |
of,differentiation |
R3368 |
T5004 |
T5005 |
nmod |
skin,cells |
R3369 |
T5005 |
T5003 |
pobj |
cells,of |
R3370 |
T5006 |
T5004 |
punct |
", ",skin |
R3371 |
T5007 |
T5008 |
compound |
hair,shaft |
R3372 |
T5008 |
T5004 |
conj |
shaft,skin |
R3373 |
T5009 |
T5008 |
punct |
-,shaft |
R3374 |
T5010 |
T5008 |
punct |
", ",shaft |
R3375 |
T5011 |
T5008 |
cc |
and,shaft |
R3376 |
T5012 |
T5008 |
conj |
blood,shaft |
R3377 |
T5013 |
T5014 |
punct |
[,24 |
R3378 |
T5014 |
T4976 |
parataxis |
24,thought |
R3379 |
T5015 |
T5014 |
nummod |
16,24 |
R3380 |
T5016 |
T5014 |
punct |
",",24 |
R3381 |
T5017 |
T5014 |
punct |
],24 |
R3382 |
T5018 |
T4976 |
punct |
.,thought |
R3383 |
T5020 |
T5021 |
prep |
In,were |
R3384 |
T5022 |
T5023 |
nmod |
compound,mice |
R3385 |
T5023 |
T5020 |
pobj |
mice,In |
R3386 |
T5024 |
T5023 |
amod |
heterozygous,mice |
R3387 |
T5025 |
T5021 |
punct |
", ",were |
R3388 |
T5026 |
T5027 |
det |
both,alleles |
R3389 |
T5027 |
T5021 |
nsubj |
alleles,were |
R3390 |
T5028 |
T5027 |
amod |
homozygous,alleles |
R3391 |
T5029 |
T5027 |
amod |
lethal,alleles |
R3392 |
T5030 |
T5027 |
nmod |
Xpd†XPCS,alleles |
R3393 |
T5031 |
T5030 |
cc |
and,Xpd†XPCS |
R3394 |
T5032 |
T5030 |
conj |
Xpd†XP,Xpd†XPCS |
R3395 |
T5033 |
T5021 |
acomp |
able,were |
R3396 |
T5034 |
T5035 |
aux |
to,alleviate |
R3397 |
T5035 |
T5033 |
xcomp |
alleviate,able |
R3398 |
T5036 |
T5037 |
npadvmod |
XpdTTD,specific |
R3399 |
T5037 |
T5039 |
amod |
specific,features |
R3400 |
T5038 |
T5037 |
punct |
-,specific |
R3401 |
T5039 |
T5035 |
dobj |
features,alleviate |
R3402 |
T5040 |
T5039 |
amod |
cutaneous,features |
R3403 |
T5041 |
T5040 |
cc |
and,cutaneous |
R3404 |
T5042 |
T5040 |
conj |
anaemic,cutaneous |
R3405 |
T5043 |
T5021 |
cc |
and,were |
R3406 |
T5044 |
T5045 |
aux |
can,defined |
R3407 |
T5045 |
T5021 |
conj |
defined,were |
R3408 |
T5046 |
T5045 |
advmod |
thus,defined |
R3409 |
T5047 |
T5045 |
auxpass |
be,defined |
R3410 |
T5048 |
T5045 |
prep |
as,defined |
R3411 |
T5049 |
T5048 |
amod |
dominant,as |
R3412 |
T5050 |
T5045 |
prep |
over,defined |
R3413 |
T5051 |
T5052 |
det |
the,allele |
R3414 |
T5052 |
T5050 |
pobj |
allele,over |
R3415 |
T5053 |
T5052 |
compound |
XpdTTD,allele |
R3416 |
T5054 |
T5045 |
prep |
with,defined |
R3417 |
T5055 |
T5054 |
pobj |
respect,with |
R3418 |
T5056 |
T5055 |
prep |
to,respect |
R3419 |
T5057 |
T5058 |
det |
these,phenotypes |
R3420 |
T5058 |
T5056 |
pobj |
phenotypes,to |
R3421 |
T5059 |
T5021 |
punct |
.,were |
R3422 |
T5061 |
T5062 |
nsubj |
We,conclude |
R3423 |
T5063 |
T5064 |
mark |
that,represent |
R3424 |
T5064 |
T5062 |
ccomp |
represent,conclude |
R3425 |
T5065 |
T5066 |
det |
the,defects |
R3426 |
T5066 |
T5064 |
nsubj |
defects,represent |
R3427 |
T5067 |
T5066 |
acl |
leading,defects |
R3428 |
T5068 |
T5067 |
prep |
to,leading |
R3429 |
T5069 |
T5070 |
amod |
embryonic,lethality |
R3430 |
T5070 |
T5068 |
pobj |
lethality,to |
R3431 |
T5071 |
T5070 |
cc |
and,lethality |
R3432 |
T5072 |
T5073 |
amod |
aberrant,differentiation |
R3433 |
T5073 |
T5070 |
conj |
differentiation,lethality |
R3434 |
T5074 |
T5073 |
amod |
terminal,differentiation |
R3435 |
T5075 |
T5073 |
prep |
of,differentiation |
R3436 |
T5076 |
T5077 |
det |
the,skin |
R3437 |
T5077 |
T5075 |
pobj |
skin,of |
R3438 |
T5078 |
T5077 |
punct |
", ",skin |
R3439 |
T5079 |
T5077 |
conj |
hair,skin |
R3440 |
T5080 |
T5079 |
punct |
", ",hair |
R3441 |
T5081 |
T5079 |
cc |
and,hair |
R3442 |
T5082 |
T5079 |
conj |
blood,hair |
R3443 |
T5083 |
T5084 |
nummod |
two,deficiencies |
R3444 |
T5084 |
T5064 |
dobj |
deficiencies,represent |
R3445 |
T5085 |
T5086 |
advmod |
qualitatively,different |
R3446 |
T5086 |
T5084 |
amod |
different,deficiencies |
R3447 |
T5087 |
T5085 |
cc |
and,qualitatively |
R3448 |
T5088 |
T5087 |
punct |
/,and |
R3449 |
T5089 |
T5087 |
cc |
or,and |
R3450 |
T5090 |
T5085 |
conj |
quantitatively,qualitatively |
R3451 |
T5091 |
T5084 |
amod |
transcriptional,deficiencies |
R3452 |
T5092 |
T5062 |
punct |
.,conclude |
R3453 |
T5094 |
T5095 |
prep |
During,is |
R3454 |
T5096 |
T5097 |
amod |
early,development |
R3455 |
T5097 |
T5094 |
pobj |
development,During |
R3456 |
T5098 |
T5097 |
amod |
embryonic,development |
R3457 |
T5099 |
T5095 |
punct |
", ",is |
R3458 |
T5100 |
T5095 |
nsubj |
XpdTTD,is |
R3459 |
T5101 |
T5095 |
acomp |
dominant,is |
R3460 |
T5102 |
T5101 |
prep |
over,dominant |
R3461 |
T5103 |
T5104 |
det |
the,alleles |
R3462 |
T5104 |
T5102 |
pobj |
alleles,over |
R3463 |
T5105 |
T5104 |
nmod |
Xpd†XPCS,alleles |
R3464 |
T5106 |
T5105 |
cc |
and,Xpd†XPCS |
R3465 |
T5107 |
T5105 |
conj |
Xpd†XP,Xpd†XPCS |
R3466 |
T5108 |
T5095 |
punct |
", ",is |
R3467 |
T5109 |
T5110 |
mark |
whereas,reversed |
R3468 |
T5110 |
T5095 |
advcl |
reversed,is |
R3469 |
T5111 |
T5110 |
advmod |
later,reversed |
R3470 |
T5112 |
T5111 |
prep |
in,later |
R3471 |
T5113 |
T5114 |
det |
the,ontogenesis |
R3472 |
T5114 |
T5112 |
pobj |
ontogenesis,in |
R3473 |
T5115 |
T5114 |
prep |
of,ontogenesis |
R3474 |
T5116 |
T5115 |
pobj |
skin,of |
R3475 |
T5117 |
T5116 |
punct |
", ",skin |
R3476 |
T5118 |
T5119 |
compound |
hair,shaft |
R3477 |
T5119 |
T5116 |
conj |
shaft,skin |
R3478 |
T5120 |
T5119 |
punct |
-,shaft |
R3479 |
T5121 |
T5119 |
punct |
", ",shaft |
R3480 |
T5122 |
T5119 |
cc |
and,shaft |
R3481 |
T5123 |
T5124 |
compound |
blood,cells |
R3482 |
T5124 |
T5119 |
conj |
cells,shaft |
R3483 |
T5125 |
T5110 |
punct |
", ",reversed |
R3484 |
T5126 |
T5127 |
det |
the,situation |
R3485 |
T5127 |
T5110 |
nsubjpass |
situation,reversed |
R3486 |
T5128 |
T5110 |
auxpass |
is,reversed |
R3487 |
T5129 |
T5095 |
punct |
.,is |
R3488 |
T5131 |
T5132 |
prep |
In,imparted |
R3489 |
T5133 |
T5134 |
poss |
its,role |
R3490 |
T5134 |
T5131 |
pobj |
role,In |
R3491 |
T5135 |
T5134 |
prep |
in,role |
R3492 |
T5136 |
T5137 |
det |
the,repair |
R3493 |
T5137 |
T5135 |
pobj |
repair,in |
R3494 |
T5138 |
T5137 |
prep |
of,repair |
R3495 |
T5139 |
T5140 |
compound |
UV,photolesions |
R3496 |
T5140 |
T5138 |
pobj |
photolesions,of |
R3497 |
T5141 |
T5132 |
punct |
", ",imparted |
R3498 |
T5142 |
T5143 |
det |
the,allele |
R3499 |
T5143 |
T5132 |
nsubj |
allele,imparted |
R3500 |
T5144 |
T5143 |
compound |
Xpd†XPCS,allele |
R3501 |
T5145 |
T5146 |
det |
a,benefit |
R3502 |
T5146 |
T5132 |
dobj |
benefit,imparted |
R3503 |
T5147 |
T5146 |
amod |
clear,benefit |
R3504 |
T5148 |
T5146 |
compound |
UV,benefit |
R3505 |
T5149 |
T5146 |
compound |
survival,benefit |
R3506 |
T5150 |
T5146 |
prep |
over,benefit |
R3507 |
T5151 |
T5152 |
det |
a,allele |
R3508 |
T5152 |
T5150 |
pobj |
allele,over |
R3509 |
T5153 |
T5152 |
amod |
single,allele |
R3510 |
T5154 |
T5152 |
compound |
XpdTTD,allele |
R3511 |
T5155 |
T5152 |
cc |
or,allele |
R3512 |
T5156 |
T5157 |
nummod |
two,alleles |
R3513 |
T5157 |
T5152 |
conj |
alleles,allele |
R3514 |
T5158 |
T5157 |
compound |
XpdXPCS,alleles |
R3515 |
T5159 |
T5146 |
amod |
independent,benefit |
R3516 |
T5160 |
T5159 |
prep |
of,independent |
R3517 |
T5161 |
T5162 |
compound |
expression,levels |
R3518 |
T5162 |
T5160 |
pobj |
levels,of |
R3519 |
T5163 |
T5132 |
punct |
", ",imparted |
R3520 |
T5164 |
T5165 |
dep |
which,is |
R3521 |
T5165 |
T5132 |
advcl |
is,imparted |
R3522 |
T5166 |
T5165 |
acomp |
consistent,is |
R3523 |
T5167 |
T5166 |
prep |
with,consistent |
R3524 |
T5168 |
T5169 |
amod |
interallelic,complementation |
R3525 |
T5169 |
T5167 |
pobj |
complementation,with |
R3526 |
T5170 |
T5132 |
punct |
.,imparted |
R3527 |
T5172 |
T5173 |
advmod |
However,argues |
R3528 |
T5174 |
T5173 |
punct |
", ",argues |
R3529 |
T5175 |
T5176 |
det |
the,observation |
R3530 |
T5176 |
T5173 |
nsubj |
observation,argues |
R3531 |
T5177 |
T5178 |
mark |
that,improved |
R3532 |
T5178 |
T5176 |
acl |
improved,observation |
R3533 |
T5179 |
T5180 |
det |
no,parameters |
R3534 |
T5180 |
T5178 |
nsubjpass |
parameters,improved |
R3535 |
T5181 |
T5180 |
amod |
other,parameters |
R3536 |
T5182 |
T5180 |
amod |
cellular,parameters |
R3537 |
T5183 |
T5182 |
cc |
or,cellular |
R3538 |
T5184 |
T5182 |
conj |
biochemical,cellular |
R3539 |
T5185 |
T5186 |
npadvmod |
UV,related |
R3540 |
T5186 |
T5180 |
amod |
related,parameters |
R3541 |
T5187 |
T5186 |
punct |
-,related |
R3542 |
T5188 |
T5178 |
auxpass |
were,improved |
R3543 |
T5189 |
T5178 |
prep |
in,improved |
R3544 |
T5190 |
T5191 |
compound |
XpdTTD, †XPCS |
R3545 |
T5191 |
T5189 |
pobj |
†XPCS,in |
R3546 |
T5192 |
T5191 |
punct |
/, †XPCS |
R3547 |
T5193 |
T5173 |
prep |
against,argues |
R3548 |
T5194 |
T5193 |
pobj |
complementation,against |
R3549 |
T5195 |
T5194 |
prep |
of,complementation |
R3550 |
T5196 |
T5197 |
det |
this,activity |
R3551 |
T5197 |
T5195 |
pobj |
activity,of |
R3552 |
T5198 |
T5197 |
compound |
repair,activity |
R3553 |
T5199 |
T5194 |
prep |
in,complementation |
R3554 |
T5200 |
T5201 |
det |
the,rescue |
R3555 |
T5201 |
T5199 |
pobj |
rescue,in |
R3556 |
T5202 |
T5201 |
prep |
of,rescue |
R3557 |
T5203 |
T5204 |
nmod |
TTD,symptoms |
R3558 |
T5204 |
T5202 |
pobj |
symptoms,of |
R3559 |
T5205 |
T5204 |
amod |
progeroid,symptoms |
R3560 |
T5206 |
T5207 |
advmod |
in,vivo |
R3561 |
T5207 |
T5201 |
advmod |
vivo,rescue |
R3562 |
T5208 |
T5173 |
punct |
.,argues |
R3565 |
T5295 |
T5296 |
amod |
Interallelic,Complementation |
R3566 |
T5297 |
T5296 |
cc |
and,Complementation |
R3567 |
T5298 |
T5299 |
compound |
XPD,Function |
R3568 |
T5299 |
T5296 |
conj |
Function,Complementation |
R3569 |
T5301 |
T5302 |
dep |
What,tell |
R3570 |
T5303 |
T5302 |
aux |
does,tell |
R3571 |
T5304 |
T5305 |
amod |
interallelic,complementation |
R3572 |
T5305 |
T5302 |
nsubj |
complementation,tell |
R3573 |
T5306 |
T5302 |
dobj |
us,tell |
R3574 |
T5307 |
T5302 |
prep |
about,tell |
R3575 |
T5308 |
T5309 |
det |
the,mechanism |
R3576 |
T5309 |
T5307 |
pobj |
mechanism,about |
R3577 |
T5310 |
T5309 |
prep |
of,mechanism |
R3578 |
T5311 |
T5312 |
compound |
XPD,function |
R3579 |
T5312 |
T5310 |
pobj |
function,of |
R3580 |
T5313 |
T5302 |
punct |
?,tell |
R3581 |
T5315 |
T5316 |
amod |
Interallelic,complementation |
R3582 |
T5316 |
T5317 |
nsubjpass |
complementation,observed |
R3583 |
T5318 |
T5317 |
auxpass |
is,observed |
R3584 |
T5319 |
T5320 |
advmod |
most,often |
R3585 |
T5320 |
T5317 |
advmod |
often,observed |
R3586 |
T5321 |
T5317 |
prep |
in,observed |
R3587 |
T5322 |
T5323 |
amod |
multimeric,proteins |
R3588 |
T5323 |
T5321 |
pobj |
proteins,in |
R3589 |
T5324 |
T5323 |
prep |
with,proteins |
R3590 |
T5325 |
T5326 |
amod |
multiple,domains |
R3591 |
T5326 |
T5324 |
pobj |
domains,with |
R3592 |
T5327 |
T5326 |
amod |
functional,domains |
R3593 |
T5328 |
T5317 |
punct |
.,observed |
R3594 |
T5330 |
T5331 |
advmod |
Unfortunately,remains |
R3595 |
T5332 |
T5331 |
punct |
", ",remains |
R3596 |
T5333 |
T5334 |
det |
the,relationship |
R3597 |
T5334 |
T5331 |
nsubj |
relationship,remains |
R3598 |
T5335 |
T5336 |
compound |
structure,function |
R3599 |
T5336 |
T5334 |
compound |
function,relationship |
R3600 |
T5337 |
T5336 |
punct |
–,function |
R3601 |
T5338 |
T5334 |
prep |
between,relationship |
R3602 |
T5339 |
T5340 |
npadvmod |
disease,causing |
R3603 |
T5340 |
T5342 |
amod |
causing,mutations |
R3604 |
T5341 |
T5340 |
punct |
-,causing |
R3605 |
T5342 |
T5338 |
pobj |
mutations,between |
R3606 |
T5343 |
T5342 |
cc |
and,mutations |
R3607 |
T5344 |
T5345 |
nmod |
XPD,domains |
R3608 |
T5345 |
T5342 |
conj |
domains,mutations |
R3609 |
T5346 |
T5345 |
amod |
functional,domains |
R3610 |
T5347 |
T5334 |
punct |
", ",relationship |
R3611 |
T5348 |
T5334 |
prep |
including,relationship |
R3612 |
T5349 |
T5350 |
amod |
detailed,information |
R3613 |
T5350 |
T5348 |
pobj |
information,including |
R3614 |
T5351 |
T5350 |
amod |
structural,information |
R3615 |
T5352 |
T5350 |
prep |
on,information |
R3616 |
T5353 |
T5352 |
pobj |
XPD,on |
R3617 |
T5354 |
T5353 |
cc |
or,XPD |
R3618 |
T5355 |
T5356 |
advmod |
even,stoichiometry |
R3619 |
T5356 |
T5353 |
conj |
stoichiometry,XPD |
R3620 |
T5357 |
T5356 |
poss |
its,stoichiometry |
R3621 |
T5358 |
T5350 |
prep |
within,information |
R3622 |
T5359 |
T5358 |
pobj |
TFIIH,within |
R3623 |
T5360 |
T5331 |
punct |
", ",remains |
R3624 |
T5361 |
T5331 |
acomp |
unknown,remains |
R3625 |
T5362 |
T5331 |
punct |
.,remains |
R3626 |
T5364 |
T5365 |
advmod |
However,is |
R3627 |
T5366 |
T5365 |
punct |
", ",is |
R3628 |
T5367 |
T5365 |
prep |
based,is |
R3629 |
T5368 |
T5367 |
prep |
on,based |
R3630 |
T5369 |
T5370 |
det |
the,ability |
R3631 |
T5370 |
T5368 |
pobj |
ability,on |
R3632 |
T5371 |
T5370 |
prep |
of,ability |
R3633 |
T5372 |
T5373 |
compound |
cell,extracts |
R3634 |
T5373 |
T5371 |
pobj |
extracts,of |
R3635 |
T5374 |
T5375 |
dep |
that,are |
R3636 |
T5375 |
T5373 |
relcl |
are,extracts |
R3637 |
T5376 |
T5375 |
acomp |
defective,are |
R3638 |
T5377 |
T5376 |
prep |
in,defective |
R3639 |
T5378 |
T5379 |
nummod |
two,components |
R3640 |
T5379 |
T5377 |
pobj |
components,in |
R3641 |
T5380 |
T5379 |
amod |
different,components |
R3642 |
T5381 |
T5379 |
compound |
TFIIH,components |
R3643 |
T5382 |
T5379 |
punct |
(,components |
R3644 |
T5383 |
T5379 |
appos |
XPD,components |
R3645 |
T5384 |
T5383 |
cc |
and,XPD |
R3646 |
T5385 |
T5383 |
conj |
XPB,XPD |
R3647 |
T5386 |
T5370 |
punct |
),ability |
R3648 |
T5387 |
T5388 |
aux |
to,complement |
R3649 |
T5388 |
T5370 |
acl |
complement,ability |
R3650 |
T5389 |
T5390 |
compound |
NER,activity |
R3651 |
T5390 |
T5388 |
dobj |
activity,complement |
R3652 |
T5391 |
T5392 |
advmod |
in,vitro |
R3653 |
T5392 |
T5388 |
advmod |
vitro,complement |
R3654 |
T5393 |
T5394 |
punct |
[,26 |
R3655 |
T5394 |
T5370 |
parataxis |
26,ability |
R3656 |
T5395 |
T5394 |
punct |
],26 |
R3657 |
T5396 |
T5365 |
punct |
", ",is |
R3658 |
T5397 |
T5365 |
nsubj |
it,is |
R3659 |
T5398 |
T5365 |
acomp |
likely,is |
R3660 |
T5399 |
T5400 |
mark |
that,multimerise |
R3661 |
T5400 |
T5365 |
ccomp |
multimerise,is |
R3662 |
T5401 |
T5400 |
nsubj |
TFIIH,multimerise |
R3663 |
T5402 |
T5401 |
punct |
(,TFIIH |
R3664 |
T5403 |
T5401 |
cc |
or,TFIIH |
R3665 |
T5404 |
T5405 |
poss |
its,components |
R3666 |
T5405 |
T5401 |
conj |
components,TFIIH |
R3667 |
T5406 |
T5400 |
punct |
),multimerise |
R3668 |
T5407 |
T5400 |
aux |
can,multimerise |
R3669 |
T5408 |
T5400 |
preconj |
either,multimerise |
R3670 |
T5409 |
T5400 |
cc |
or,multimerise |
R3671 |
T5410 |
T5400 |
conj |
exchange,multimerise |
R3672 |
T5411 |
T5412 |
advmod |
at,least |
R3673 |
T5412 |
T5413 |
advmod |
least,during |
R3674 |
T5413 |
T5410 |
prep |
during,exchange |
R3675 |
T5414 |
T5415 |
det |
the,reaction |
R3676 |
T5415 |
T5413 |
pobj |
reaction,during |
R3677 |
T5416 |
T5415 |
compound |
NER,reaction |
R3678 |
T5417 |
T5365 |
punct |
.,is |
R3679 |
T5419 |
T5420 |
advmod |
Furthermore,known |
R3680 |
T5421 |
T5420 |
punct |
", ",known |
R3681 |
T5422 |
T5420 |
nsubjpass |
XPD,known |
R3682 |
T5423 |
T5420 |
auxpass |
is,known |
R3683 |
T5424 |
T5425 |
aux |
to,be |
R3684 |
T5425 |
T5420 |
xcomp |
be,known |
R3685 |
T5426 |
T5427 |
det |
a,subunit |
R3686 |
T5427 |
T5425 |
attr |
subunit,be |
R3687 |
T5428 |
T5427 |
advmod |
“,subunit |
R3688 |
T5429 |
T5430 |
advmod |
loosely,bound |
R3689 |
T5430 |
T5427 |
amod |
bound,subunit |
R3690 |
T5431 |
T5427 |
punct |
”,subunit |
R3691 |
T5432 |
T5427 |
prep |
of,subunit |
R3692 |
T5433 |
T5432 |
pobj |
TFIIH,of |
R3693 |
T5434 |
T5435 |
punct |
[,27 |
R3694 |
T5435 |
T5420 |
parataxis |
27,known |
R3695 |
T5436 |
T5435 |
punct |
],27 |
R3696 |
T5437 |
T5420 |
punct |
.,known |
R3697 |
T5439 |
T5440 |
nsubj |
We,envisage |
R3698 |
T5441 |
T5440 |
advmod |
thus,envisage |
R3699 |
T5442 |
T5443 |
det |
the,mechanism |
R3700 |
T5443 |
T5445 |
nsubj |
mechanism,involve |
R3701 |
T5444 |
T5443 |
amod |
molecular,mechanism |
R3702 |
T5445 |
T5440 |
ccomp |
involve,envisage |
R3703 |
T5446 |
T5443 |
prep |
of,mechanism |
R3704 |
T5447 |
T5448 |
amod |
interallelic,complementation |
R3705 |
T5448 |
T5446 |
pobj |
complementation,of |
R3706 |
T5449 |
T5445 |
aux |
to,involve |
R3707 |
T5450 |
T5451 |
det |
the,exchange |
R3708 |
T5451 |
T5445 |
dobj |
exchange,involve |
R3709 |
T5452 |
T5451 |
prep |
of,exchange |
R3710 |
T5453 |
T5454 |
compound |
XPD,molecules |
R3711 |
T5454 |
T5452 |
pobj |
molecules,of |
R3712 |
T5455 |
T5451 |
prep |
within,exchange |
R3713 |
T5456 |
T5457 |
det |
the,complex |
R3714 |
T5457 |
T5455 |
pobj |
complex,within |
R3715 |
T5458 |
T5457 |
compound |
TFIIH,complex |
R3716 |
T5459 |
T5451 |
cc |
or,exchange |
R3717 |
T5460 |
T5451 |
conj |
turnover,exchange |
R3718 |
T5461 |
T5460 |
prep |
of,turnover |
R3719 |
T5462 |
T5463 |
compound |
TFIIH,complexes |
R3720 |
T5463 |
T5461 |
pobj |
complexes,of |
R3721 |
T5464 |
T5463 |
acl |
containing,complexes |
R3722 |
T5465 |
T5466 |
amod |
different,molecules |
R3723 |
T5466 |
T5464 |
dobj |
molecules,containing |
R3724 |
T5467 |
T5466 |
compound |
XPD,molecules |
R3725 |
T5468 |
T5460 |
prep |
at,turnover |
R3726 |
T5469 |
T5470 |
det |
the,site |
R3727 |
T5470 |
T5468 |
pobj |
site,at |
R3728 |
T5471 |
T5470 |
prep |
of,site |
R3729 |
T5472 |
T5473 |
compound |
DNA,damage |
R3730 |
T5473 |
T5471 |
pobj |
damage,of |
R3731 |
T5474 |
T5460 |
prep |
during,turnover |
R3732 |
T5475 |
T5476 |
det |
the,course |
R3733 |
T5476 |
T5474 |
pobj |
course,during |
R3734 |
T5477 |
T5476 |
prep |
of,course |
R3735 |
T5478 |
T5479 |
det |
the,genome |
R3736 |
T5479 |
T5477 |
pobj |
genome,of |
R3737 |
T5480 |
T5479 |
amod |
global,genome |
R3738 |
T5481 |
T5482 |
advmod |
as,as |
R3739 |
T5482 |
T5451 |
cc |
as,exchange |
R3740 |
T5483 |
T5482 |
advmod |
well,as |
R3741 |
T5484 |
T5485 |
npadvmod |
transcription,coupled |
R3742 |
T5485 |
T5487 |
amod |
coupled,repair |
R3743 |
T5486 |
T5485 |
punct |
-,coupled |
R3744 |
T5487 |
T5451 |
conj |
repair,exchange |
R3745 |
T5488 |
T5487 |
prep |
of,repair |
R3746 |
T5489 |
T5490 |
preconj |
either,damage |
R3747 |
T5490 |
T5488 |
pobj |
damage,of |
R3748 |
T5491 |
T5492 |
npadvmod |
UV,induced |
R3749 |
T5492 |
T5490 |
amod |
induced,damage |
R3750 |
T5493 |
T5492 |
punct |
-,induced |
R3751 |
T5494 |
T5492 |
cc |
or,induced |
R3752 |
T5495 |
T5492 |
conj |
endogenous,induced |
R3753 |
T5496 |
T5490 |
compound |
DNA,damage |
R3754 |
T5497 |
T5440 |
punct |
.,envisage |
R3755 |
T5607 |
T5608 |
det |
A,Paradigm |
R3756 |
T5609 |
T5608 |
amod |
Biallelic,Paradigm |
R3757 |
T5610 |
T5608 |
prep |
for,Paradigm |
R3758 |
T5611 |
T5612 |
compound |
XPD,Disorders |
R3759 |
T5612 |
T5610 |
pobj |
Disorders,for |
R3760 |
T5614 |
T5615 |
advmod |
Recently,characterised |
R3761 |
T5616 |
T5615 |
punct |
", ",characterised |
R3762 |
T5617 |
T5615 |
nsubjpass |
proteins,characterised |
R3763 |
T5618 |
T5617 |
acl |
originating,proteins |
R3764 |
T5619 |
T5618 |
prep |
from,originating |
R3765 |
T5620 |
T5621 |
amod |
presumed,alleles |
R3766 |
T5621 |
T5619 |
pobj |
alleles,from |
R3767 |
T5622 |
T5621 |
amod |
null,alleles |
R3768 |
T5623 |
T5615 |
auxpass |
were,characterised |
R3769 |
T5624 |
T5615 |
advmod |
biochemically,characterised |
R3770 |
T5625 |
T5615 |
prep |
as,characterised |
R3771 |
T5626 |
T5625 |
amod |
inactive,as |
R3772 |
T5627 |
T5615 |
prep |
in,characterised |
R3773 |
T5628 |
T5629 |
amod |
basal,transcription |
R3774 |
T5629 |
T5627 |
pobj |
transcription,in |
R3775 |
T5630 |
T5631 |
punct |
[,27 |
R3776 |
T5631 |
T5615 |
parataxis |
27,characterised |
R3777 |
T5632 |
T5631 |
punct |
],27 |
R3778 |
T5633 |
T5615 |
punct |
", ",characterised |
R3779 |
T5634 |
T5615 |
advcl |
providing,characterised |
R3780 |
T5635 |
T5636 |
det |
an,explanation |
R3781 |
T5636 |
T5634 |
dobj |
explanation,providing |
R3782 |
T5637 |
T5636 |
prep |
as,explanation |
R3783 |
T5638 |
T5637 |
prep |
to,as |
R3784 |
T5639 |
T5640 |
advmod |
why,failed |
R3785 |
T5640 |
T5638 |
pcomp |
failed,to |
R3786 |
T5641 |
T5642 |
det |
these,alleles |
R3787 |
T5642 |
T5640 |
nsubj |
alleles,failed |
R3788 |
T5643 |
T5644 |
aux |
to,rescue |
R3789 |
T5644 |
T5640 |
xcomp |
rescue,failed |
R3790 |
T5645 |
T5644 |
dobj |
lethality,rescue |
R3791 |
T5646 |
T5644 |
prep |
in,rescue |
R3792 |
T5647 |
T5648 |
amod |
haploid,pombe |
R3793 |
T5648 |
T5646 |
pobj |
pombe,in |
R3794 |
T5649 |
T5648 |
nmod |
S.,pombe |
R3795 |
T5650 |
T5648 |
prep |
with,pombe |
R3796 |
T5651 |
T5652 |
det |
a,mutation |
R3797 |
T5652 |
T5650 |
pobj |
mutation,with |
R3798 |
T5653 |
T5652 |
amod |
null,mutation |
R3799 |
T5654 |
T5652 |
prep |
in,mutation |
R3800 |
T5655 |
T5656 |
det |
the,homologue |
R3801 |
T5656 |
T5654 |
pobj |
homologue,in |
R3802 |
T5657 |
T5656 |
compound |
XPD,homologue |
R3803 |
T5658 |
T5656 |
appos |
rad15,homologue |
R3804 |
T5659 |
T5660 |
punct |
[,19 |
R3805 |
T5660 |
T5640 |
parataxis |
19,failed |
R3806 |
T5661 |
T5660 |
punct |
],19 |
R3807 |
T5662 |
T5615 |
punct |
.,characterised |
R3808 |
T5664 |
T5665 |
poss |
Our,data |
R3809 |
T5665 |
T5666 |
nsubj |
data,suggest |
R3810 |
T5667 |
T5668 |
mark |
that,have |
R3811 |
T5668 |
T5666 |
ccomp |
have,suggest |
R3812 |
T5669 |
T5670 |
amod |
certain,alleles |
R3813 |
T5670 |
T5668 |
nsubj |
alleles,have |
R3814 |
T5671 |
T5672 |
advmod |
presumed,null |
R3815 |
T5672 |
T5670 |
amod |
null,alleles |
R3816 |
T5673 |
T5668 |
punct |
", ",have |
R3817 |
T5674 |
T5675 |
mark |
although,unable |
R3818 |
T5675 |
T5668 |
advcl |
unable,have |
R3819 |
T5676 |
T5677 |
prep |
on,support |
R3820 |
T5677 |
T5675 |
xcomp |
support,unable |
R3821 |
T5678 |
T5679 |
poss |
their,own |
R3822 |
T5679 |
T5676 |
pobj |
own,on |
R3823 |
T5680 |
T5677 |
aux |
to,support |
R3824 |
T5681 |
T5682 |
amod |
basal,transcription |
R3825 |
T5682 |
T5677 |
dobj |
transcription,support |
R3826 |
T5683 |
T5668 |
punct |
", ",have |
R3827 |
T5684 |
T5668 |
aux |
may,have |
R3828 |
T5685 |
T5668 |
prep |
in,have |
R3829 |
T5686 |
T5685 |
pobj |
fact,in |
R3830 |
T5687 |
T5688 |
det |
a,impact |
R3831 |
T5688 |
T5668 |
dobj |
impact,have |
R3832 |
T5689 |
T5688 |
amod |
substantial,impact |
R3833 |
T5690 |
T5688 |
prep |
on,impact |
R3834 |
T5691 |
T5692 |
compound |
disease,outcome |
R3835 |
T5692 |
T5690 |
pobj |
outcome,on |
R3836 |
T5693 |
T5688 |
prep |
in,impact |
R3837 |
T5694 |
T5695 |
nmod |
compound,humans |
R3838 |
T5695 |
T5693 |
pobj |
humans,in |
R3839 |
T5696 |
T5695 |
amod |
heterozygous,humans |
R3840 |
T5697 |
T5668 |
punct |
", ",have |
R3841 |
T5698 |
T5699 |
mark |
as,in |
R3842 |
T5699 |
T5668 |
advcl |
in,have |
R3843 |
T5700 |
T5699 |
nsubj |
they,in |
R3844 |
T5701 |
T5699 |
aux |
do,in |
R3845 |
T5702 |
T5703 |
compound |
mouse,models |
R3846 |
T5703 |
T5699 |
pobj |
models,in |
R3847 |
T5704 |
T5666 |
punct |
.,suggest |
R3848 |
T5706 |
T5707 |
amod |
Clinical,evidence |
R3849 |
T5707 |
T5708 |
nsubj |
evidence,comes |
R3850 |
T5709 |
T5707 |
prep |
in,evidence |
R3851 |
T5710 |
T5709 |
pobj |
support,in |
R3852 |
T5711 |
T5710 |
prep |
of,support |
R3853 |
T5712 |
T5713 |
det |
this,hypothesis |
R3854 |
T5713 |
T5711 |
pobj |
hypothesis,of |
R3855 |
T5714 |
T5708 |
prep |
from,comes |
R3856 |
T5715 |
T5716 |
det |
a,number |
R3857 |
T5716 |
T5714 |
pobj |
number,from |
R3858 |
T5717 |
T5716 |
prep |
of,number |
R3859 |
T5718 |
T5719 |
compound |
XP,patients |
R3860 |
T5719 |
T5717 |
pobj |
patients,of |
R3861 |
T5720 |
T5719 |
compound |
complementation,patients |
R3862 |
T5721 |
T5722 |
compound |
group,D |
R3863 |
T5722 |
T5719 |
compound |
D,patients |
R3864 |
T5723 |
T5724 |
dep |
that,fit |
R3865 |
T5724 |
T5719 |
relcl |
fit,patients |
R3866 |
T5725 |
T5724 |
aux |
do,fit |
R3867 |
T5726 |
T5724 |
neg |
not,fit |
R3868 |
T5727 |
T5724 |
prep |
within,fit |
R3869 |
T5728 |
T5729 |
det |
the,framework |
R3870 |
T5729 |
T5727 |
pobj |
framework,within |
R3871 |
T5730 |
T5729 |
prep |
of,framework |
R3872 |
T5731 |
T5732 |
det |
the,paradigm |
R3873 |
T5732 |
T5730 |
pobj |
paradigm,of |
R3874 |
T5733 |
T5732 |
amod |
current,paradigm |
R3875 |
T5734 |
T5732 |
amod |
monoallelic,paradigm |
R3876 |
T5735 |
T5732 |
prep |
of,paradigm |
R3877 |
T5736 |
T5737 |
compound |
XPD,disorders |
R3878 |
T5737 |
T5735 |
pobj |
disorders,of |
R3879 |
T5738 |
T5739 |
punct |
(,Figure |
R3880 |
T5739 |
T5708 |
parataxis |
Figure,comes |
R3881 |
T5740 |
T5739 |
nummod |
5,Figure |
R3882 |
T5741 |
T5739 |
punct |
),Figure |
R3883 |
T5742 |
T5708 |
punct |
.,comes |
R3884 |
T5744 |
T5745 |
prep |
In,had |
R3885 |
T5746 |
T5744 |
pobj |
contrast,In |
R3886 |
T5747 |
T5746 |
prep |
to,contrast |
R3887 |
T5748 |
T5749 |
nummod |
two,patients |
R3888 |
T5749 |
T5747 |
pobj |
patients,to |
R3889 |
T5750 |
T5749 |
amod |
hemizygous,patients |
R3890 |
T5751 |
T5749 |
compound |
XPDXPCS,patients |
R3891 |
T5752 |
T5749 |
acl |
carrying,patients |
R3892 |
T5753 |
T5754 |
det |
the,alleles |
R3893 |
T5754 |
T5752 |
dobj |
alleles,carrying |
R3894 |
T5755 |
T5756 |
npadvmod |
XPDG47R,encoding |
R3895 |
T5756 |
T5754 |
amod |
encoding,alleles |
R3896 |
T5757 |
T5755 |
punct |
-,XPDG47R |
R3897 |
T5758 |
T5755 |
cc |
or,XPDG47R |
R3898 |
T5759 |
T5755 |
conj |
XPDR666W,XPDG47R |
R3899 |
T5760 |
T5756 |
punct |
-,encoding |
R3900 |
T5761 |
T5762 |
dep |
who,died |
R3901 |
T5762 |
T5754 |
relcl |
died,alleles |
R3902 |
T5763 |
T5762 |
prep |
of,died |
R3903 |
T5764 |
T5765 |
det |
the,disease |
R3904 |
T5765 |
T5763 |
pobj |
disease,of |
R3905 |
T5766 |
T5762 |
prep |
before,died |
R3906 |
T5767 |
T5768 |
nummod |
2,y |
R3907 |
T5768 |
T5766 |
pobj |
y,before |
R3908 |
T5769 |
T5768 |
prep |
of,y |
R3909 |
T5770 |
T5769 |
pobj |
age,of |
R3910 |
T5771 |
T5745 |
punct |
", ",had |
R3911 |
T5772 |
T5773 |
nummod |
two,patients |
R3912 |
T5773 |
T5745 |
nsubj |
patients,had |
R3913 |
T5774 |
T5773 |
amod |
compound,patients |
R3914 |
T5775 |
T5773 |
amod |
heterozygous,patients |
R3915 |
T5776 |
T5773 |
compound |
XPDXPCS,patients |
R3916 |
T5777 |
T5773 |
acl |
carrying,patients |
R3917 |
T5778 |
T5779 |
det |
the,alleles |
R3918 |
T5779 |
T5777 |
dobj |
alleles,carrying |
R3919 |
T5780 |
T5779 |
amod |
same,alleles |
R3920 |
T5781 |
T5782 |
npadvmod |
XPDG47R,encoding |
R3921 |
T5782 |
T5779 |
amod |
encoding,alleles |
R3922 |
T5783 |
T5781 |
punct |
-,XPDG47R |
R3923 |
T5784 |
T5781 |
cc |
or,XPDG47R |
R3924 |
T5785 |
T5781 |
conj |
XPDR666W,XPDG47R |
R3925 |
T5786 |
T5782 |
punct |
-,encoding |
R3926 |
T5787 |
T5779 |
prep |
in,alleles |
R3927 |
T5788 |
T5787 |
pobj |
addition,in |
R3928 |
T5789 |
T5788 |
prep |
to,addition |
R3929 |
T5790 |
T5791 |
det |
the,730 |
R3930 |
T5791 |
T5789 |
pobj |
730,to |
R3931 |
T5792 |
T5793 |
advmod |
presumed,null |
R3932 |
T5793 |
T5791 |
amod |
null,730 |
R3933 |
T5794 |
T5791 |
nmod |
XPDL461V,730 |
R3934 |
T5795 |
T5791 |
punct |
+,730 |
R3935 |
T5796 |
T5791 |
compound |
del716,730 |
R3936 |
T5797 |
T5791 |
punct |
−,730 |
R3937 |
T5798 |
T5773 |
appos |
both,patients |
R3938 |
T5799 |
T5800 |
advmod |
considerably,milder |
R3939 |
T5800 |
T5801 |
amod |
milder,symptoms |
R3940 |
T5801 |
T5745 |
dobj |
symptoms,had |
R3941 |
T5802 |
T5801 |
compound |
disease,symptoms |
R3942 |
T5803 |
T5745 |
cc |
and,had |
R3943 |
T5804 |
T5745 |
conj |
survived,had |
R3944 |
T5805 |
T5806 |
amod |
more,ten |
R3945 |
T5806 |
T5808 |
nummod |
ten,times |
R3946 |
T5807 |
T5806 |
quantmod |
than,ten |
R3947 |
T5808 |
T5809 |
npadvmod |
times,longer |
R3948 |
T5809 |
T5804 |
advmod |
longer,survived |
R3949 |
T5810 |
T5811 |
punct |
(,A. |
R3950 |
T5811 |
T5804 |
meta |
A.,survived |
R3951 |
T5812 |
T5811 |
nmod |
Lehmann,A. |
R3952 |
T5813 |
T5811 |
punct |
", ",A. |
R3953 |
T5814 |
T5811 |
amod |
personal,A. |
R3954 |
T5815 |
T5811 |
nmod |
communication,A. |
R3955 |
T5816 |
T5811 |
punct |
),A. |
R3956 |
T5817 |
T5818 |
punct |
(,Figure |
R3957 |
T5818 |
T5804 |
parataxis |
Figure,survived |
R3958 |
T5819 |
T5818 |
nummod |
5,Figure |
R3959 |
T5820 |
T5818 |
punct |
),Figure |
R3960 |
T5821 |
T5745 |
punct |
.,had |
R3961 |
T5823 |
T5824 |
compound |
Compound,heterozygosity |
R3962 |
T5824 |
T5825 |
nsubjpass |
heterozygosity,associated |
R3963 |
T5826 |
T5825 |
auxpass |
is,associated |
R3964 |
T5827 |
T5825 |
advmod |
also,associated |
R3965 |
T5828 |
T5825 |
prep |
with,associated |
R3966 |
T5829 |
T5830 |
det |
the,syndrome |
R3967 |
T5830 |
T5828 |
pobj |
syndrome,with |
R3968 |
T5831 |
T5832 |
advmod |
recently,reported |
R3969 |
T5832 |
T5830 |
amod |
reported,syndrome |
R3970 |
T5833 |
T5830 |
nmod |
combination,syndrome |
R3971 |
T5834 |
T5830 |
nmod |
XP,syndrome |
R3972 |
T5835 |
T5834 |
cc |
and,XP |
R3973 |
T5836 |
T5834 |
conj |
TTD,XP |
R3974 |
T5837 |
T5838 |
punct |
(,XPTTD |
R3975 |
T5838 |
T5836 |
parataxis |
XPTTD,TTD |
R3976 |
T5839 |
T5838 |
punct |
),XPTTD |
R3977 |
T5840 |
T5841 |
punct |
[,8 |
R3978 |
T5841 |
T5825 |
parataxis |
8,associated |
R3979 |
T5842 |
T5841 |
punct |
],8 |
R3980 |
T5843 |
T5825 |
punct |
.,associated |
R3981 |
T5845 |
T5846 |
advcl |
Similar,had |
R3982 |
T5847 |
T5845 |
prep |
to,Similar |
R3983 |
T5848 |
T5849 |
det |
the,mice |
R3984 |
T5849 |
T5847 |
pobj |
mice,to |
R3985 |
T5850 |
T5851 |
nmod |
XpdTTD,†XPCS |
R3986 |
T5851 |
T5849 |
nmod |
†XPCS,mice |
R3987 |
T5852 |
T5851 |
punct |
/,†XPCS |
R3988 |
T5853 |
T5851 |
cc |
and,†XPCS |
R3989 |
T5854 |
T5855 |
compound |
XpdTTD,†XP |
R3990 |
T5855 |
T5851 |
conj |
†XP,†XPCS |
R3991 |
T5856 |
T5855 |
punct |
/,†XP |
R3992 |
T5857 |
T5849 |
acl |
described,mice |
R3993 |
T5858 |
T5857 |
advmod |
here,described |
R3994 |
T5859 |
T5846 |
punct |
", ",had |
R3995 |
T5860 |
T5861 |
det |
both,patients |
R3996 |
T5861 |
T5846 |
nsubj |
patients,had |
R3997 |
T5862 |
T5861 |
prep |
with,patients |
R3998 |
T5863 |
T5862 |
pobj |
XPTTD,with |
R3999 |
T5864 |
T5861 |
acl |
described,patients |
R4000 |
T5865 |
T5866 |
advmod |
so,far |
R4001 |
T5866 |
T5864 |
advmod |
far,described |
R4002 |
T5867 |
T5868 |
amod |
intermediate,values |
R4003 |
T5868 |
T5846 |
dobj |
values,had |
R4004 |
T5869 |
T5870 |
compound |
hair,cysteine |
R4005 |
T5870 |
T5868 |
compound |
cysteine,values |
R4006 |
T5871 |
T5846 |
punct |
.,had |
R4007 |
T5873 |
T5874 |
advmod |
Furthermore,carried |
R4008 |
T5875 |
T5874 |
punct |
", ",carried |
R4009 |
T5876 |
T5877 |
compound |
XPTTD,XP38BR |
R4010 |
T5877 |
T5874 |
nsubj |
XP38BR,carried |
R4011 |
T5878 |
T5877 |
compound |
patient,XP38BR |
R4012 |
T5879 |
T5880 |
det |
a,mutation |
R4013 |
T5880 |
T5874 |
dobj |
mutation,carried |
R4014 |
T5881 |
T5880 |
punct |
“,mutation |
R4015 |
T5882 |
T5880 |
amod |
causative,mutation |
R4016 |
T5883 |
T5880 |
punct |
”,mutation |
R4017 |
T5884 |
T5880 |
compound |
TTD,mutation |
R4018 |
T5885 |
T5874 |
prep |
in,carried |
R4019 |
T5886 |
T5887 |
nummod |
one,allele |
R4020 |
T5887 |
T5885 |
pobj |
allele,in |
R4021 |
T5888 |
T5874 |
cc |
and,carried |
R4022 |
T5889 |
T5890 |
det |
a,mutation |
R4023 |
T5890 |
T5874 |
conj |
mutation,carried |
R4024 |
T5891 |
T5890 |
amod |
novel,mutation |
R4025 |
T5892 |
T5890 |
compound |
point,mutation |
R4026 |
T5893 |
T5890 |
acl |
encoding,mutation |
R4027 |
T5894 |
T5893 |
dobj |
XPDL485P,encoding |
R4028 |
T5895 |
T5890 |
prep |
in,mutation |
R4029 |
T5896 |
T5897 |
det |
the,other |
R4030 |
T5897 |
T5895 |
pobj |
other,in |
R4031 |
T5898 |
T5874 |
punct |
.,carried |
R4032 |
T5900 |
T5901 |
mark |
Although,fails |
R4033 |
T5901 |
T5907 |
advcl |
fails,suggest |
R4034 |
T5902 |
T5903 |
det |
the,allele |
R4035 |
T5903 |
T5901 |
nsubj |
allele,fails |
R4036 |
T5904 |
T5905 |
npadvmod |
XPDL485P,encoding |
R4037 |
T5905 |
T5903 |
amod |
encoding,allele |
R4038 |
T5906 |
T5905 |
punct |
-,encoding |
R4039 |
T5908 |
T5909 |
aux |
to,complement |
R4040 |
T5909 |
T5901 |
xcomp |
complement,fails |
R4041 |
T5910 |
T5909 |
dobj |
viability,complement |
R4042 |
T5911 |
T5909 |
prep |
in,complement |
R4043 |
T5912 |
T5913 |
det |
the,strain |
R4044 |
T5913 |
T5911 |
pobj |
strain,in |
R4045 |
T5914 |
T5913 |
amod |
haploid,strain |
R4046 |
T5915 |
T5913 |
nmod |
S.,strain |
R4047 |
T5916 |
T5913 |
nmod |
pombe,strain |
R4048 |
T5917 |
T5913 |
compound |
rad15,strain |
R4049 |
T5918 |
T5913 |
compound |
deletion,strain |
R4050 |
T5919 |
T5901 |
cc |
and,fails |
R4051 |
T5920 |
T5901 |
conj |
is,fails |
R4052 |
T5921 |
T5920 |
advmod |
thus,is |
R4053 |
T5922 |
T5920 |
acomp |
interpretable,is |
R4054 |
T5923 |
T5922 |
prep |
as,interpretable |
R4055 |
T5924 |
T5925 |
det |
a,allele |
R4056 |
T5925 |
T5923 |
pobj |
allele,as |
R4057 |
T5926 |
T5925 |
amod |
null,allele |
R4058 |
T5927 |
T5928 |
punct |
[,8 |
R4059 |
T5928 |
T5920 |
parataxis |
8,is |
R4060 |
T5929 |
T5928 |
punct |
],8 |
R4061 |
T5930 |
T5907 |
punct |
", ",suggest |
R4062 |
T5931 |
T5907 |
nsubj |
we,suggest |
R4063 |
T5932 |
T5907 |
advmod |
nonetheless,suggest |
R4064 |
T5933 |
T5934 |
mark |
that,involves |
R4065 |
T5934 |
T5907 |
ccomp |
involves,suggest |
R4066 |
T5935 |
T5936 |
det |
the,phenotype |
R4067 |
T5936 |
T5934 |
nsubj |
phenotype,involves |
R4068 |
T5937 |
T5936 |
amod |
combined,phenotype |
R4069 |
T5938 |
T5936 |
compound |
XPTTD,phenotype |
R4070 |
T5939 |
T5936 |
prep |
in,phenotype |
R4071 |
T5940 |
T5941 |
det |
this,patient |
R4072 |
T5941 |
T5939 |
pobj |
patient,in |
R4073 |
T5942 |
T5943 |
amod |
phenotypic,contributions |
R4074 |
T5943 |
T5934 |
dobj |
contributions,involves |
R4075 |
T5944 |
T5943 |
prep |
from,contributions |
R4076 |
T5945 |
T5946 |
det |
both,alleles |
R4077 |
T5946 |
T5944 |
pobj |
alleles,from |
R4078 |
T5947 |
T5907 |
punct |
.,suggest |
R4079 |
T5949 |
T5950 |
advcl |
Taken,suggest |
R4080 |
T5951 |
T5949 |
advmod |
together,Taken |
R4081 |
T5952 |
T5950 |
punct |
", ",suggest |
R4082 |
T5953 |
T5954 |
det |
these,data |
R4083 |
T5954 |
T5950 |
nsubj |
data,suggest |
R4084 |
T5955 |
T5956 |
det |
a,shift |
R4085 |
T5956 |
T5950 |
dobj |
shift,suggest |
R4086 |
T5957 |
T5956 |
prep |
to,shift |
R4087 |
T5958 |
T5959 |
det |
a,paradigm |
R4088 |
T5959 |
T5957 |
pobj |
paradigm,to |
R4089 |
T5960 |
T5959 |
amod |
biallelic,paradigm |
R4090 |
T5961 |
T5959 |
prep |
for,paradigm |
R4091 |
T5962 |
T5963 |
nmod |
compound,patients |
R4092 |
T5963 |
T5961 |
pobj |
patients,for |
R4093 |
T5964 |
T5963 |
amod |
heterozygous,patients |
R4094 |
T5965 |
T5963 |
prep |
in,patients |
R4095 |
T5966 |
T5967 |
compound |
XP,D |
R4096 |
T5967 |
T5965 |
pobj |
D,in |
R4097 |
T5968 |
T5967 |
compound |
complementation,D |
R4098 |
T5969 |
T5967 |
compound |
group,D |
R4099 |
T5970 |
T5950 |
punct |
.,suggest |
R4100 |
T6042 |
T6041 |
prep |
of,Potential |
R4101 |
T6043 |
T6044 |
amod |
Combined,Alleles |
R4102 |
T6044 |
T6042 |
pobj |
Alleles,of |
R4103 |
T6045 |
T6044 |
amod |
Recessive,Alleles |
R4104 |
T6046 |
T6047 |
aux |
to,Affect |
R4105 |
T6047 |
T6041 |
acl |
Affect,Potential |
R4106 |
T6048 |
T6049 |
amod |
Phenotypic,Diversity |
R4107 |
T6049 |
T6047 |
dobj |
Diversity,Affect |
R4108 |
T6050 |
T6047 |
prep |
in,Affect |
R4109 |
T6051 |
T6050 |
pobj |
Mammals,in |
R4110 |
T6053 |
T6054 |
prep |
In,remains |
R4111 |
T6055 |
T6053 |
pobj |
humans,In |
R4112 |
T6056 |
T6054 |
punct |
", ",remains |
R4113 |
T6057 |
T6058 |
det |
the,relevance |
R4114 |
T6058 |
T6054 |
nsubj |
relevance,remains |
R4115 |
T6059 |
T6058 |
amod |
clinical,relevance |
R4116 |
T6060 |
T6058 |
prep |
of,relevance |
R4117 |
T6061 |
T6062 |
amod |
biallelic,effects |
R4118 |
T6062 |
T6060 |
pobj |
effects,of |
R4119 |
T6063 |
T6064 |
amod |
such,as |
R4120 |
T6064 |
T6062 |
prep |
as,effects |
R4121 |
T6065 |
T6066 |
amod |
interallelic,complementation |
R4122 |
T6066 |
T6064 |
pobj |
complementation,as |
R4123 |
T6067 |
T6054 |
acomp |
unknown,remains |
R4124 |
T6068 |
T6054 |
punct |
.,remains |
R4125 |
T6070 |
T6071 |
mark |
Although,described |
R4126 |
T6071 |
T6081 |
advcl |
described,noted |
R4127 |
T6072 |
T6073 |
amod |
interallelic,complementation |
R4128 |
T6073 |
T6071 |
nsubjpass |
complementation,described |
R4129 |
T6074 |
T6073 |
prep |
between,complementation |
R4130 |
T6075 |
T6076 |
nummod |
two,alleles |
R4131 |
T6076 |
T6074 |
pobj |
alleles,between |
R4132 |
T6077 |
T6076 |
amod |
endogenous,alleles |
R4133 |
T6078 |
T6076 |
amod |
mutant,alleles |
R4134 |
T6079 |
T6071 |
aux |
has,described |
R4135 |
T6080 |
T6071 |
auxpass |
been,described |
R4136 |
T6082 |
T6071 |
prep |
in,described |
R4137 |
T6083 |
T6082 |
pobj |
cells,in |
R4138 |
T6084 |
T6083 |
prep |
from,cells |
R4139 |
T6085 |
T6086 |
det |
a,patient |
R4140 |
T6086 |
T6084 |
pobj |
patient,from |
R4141 |
T6087 |
T6086 |
nmod |
compound,patient |
R4142 |
T6088 |
T6086 |
amod |
heterozygous,patient |
R4143 |
T6089 |
T6086 |
prep |
with,patient |
R4144 |
T6090 |
T6091 |
amod |
methylmalonic,acidaemia |
R4145 |
T6091 |
T6089 |
pobj |
acidaemia,with |
R4146 |
T6092 |
T6081 |
punct |
", ",noted |
R4147 |
T6093 |
T6094 |
det |
no,effects |
R4148 |
T6094 |
T6081 |
nsubjpass |
effects,noted |
R4149 |
T6095 |
T6094 |
amod |
observable,effects |
R4150 |
T6096 |
T6094 |
prep |
on,effects |
R4151 |
T6097 |
T6098 |
compound |
disease,outcome |
R4152 |
T6098 |
T6096 |
pobj |
outcome,on |
R4153 |
T6099 |
T6081 |
auxpass |
were,noted |
R4154 |
T6100 |
T6081 |
prep |
in,noted |
R4155 |
T6101 |
T6102 |
det |
the,patient |
R4156 |
T6102 |
T6100 |
pobj |
patient,in |
R4157 |
T6103 |
T6104 |
punct |
[,28 |
R4158 |
T6104 |
T6081 |
parataxis |
28,noted |
R4159 |
T6105 |
T6104 |
punct |
],28 |
R4160 |
T6106 |
T6081 |
punct |
.,noted |
R4161 |
T6108 |
T6109 |
advmod |
Thus,is |
R4162 |
T6110 |
T6109 |
punct |
", ",is |
R4163 |
T6111 |
T6109 |
prep |
to,is |
R4164 |
T6112 |
T6113 |
det |
the,best |
R4165 |
T6113 |
T6111 |
pobj |
best,to |
R4166 |
T6114 |
T6113 |
prep |
of,best |
R4167 |
T6115 |
T6116 |
poss |
our,knowledge |
R4168 |
T6116 |
T6114 |
pobj |
knowledge,of |
R4169 |
T6117 |
T6109 |
punct |
", ",is |
R4170 |
T6118 |
T6119 |
det |
the,amelioration |
R4171 |
T6119 |
T6109 |
nsubj |
amelioration,is |
R4172 |
T6120 |
T6119 |
prep |
of,amelioration |
R4173 |
T6121 |
T6122 |
amod |
progeroid,features |
R4174 |
T6122 |
T6120 |
pobj |
features,of |
R4175 |
T6123 |
T6119 |
acl |
observed,amelioration |
R4176 |
T6124 |
T6123 |
advmod |
here,observed |
R4177 |
T6125 |
T6126 |
det |
the,demonstration |
R4178 |
T6126 |
T6109 |
attr |
demonstration,is |
R4179 |
T6127 |
T6126 |
amod |
first,demonstration |
R4180 |
T6128 |
T6129 |
advmod |
in,vivo |
R4181 |
T6129 |
T6126 |
amod |
vivo,demonstration |
R4182 |
T6130 |
T6126 |
prep |
in,demonstration |
R4183 |
T6131 |
T6132 |
nmod |
compound,animals |
R4184 |
T6132 |
T6130 |
pobj |
animals,in |
R4185 |
T6133 |
T6132 |
amod |
heterozygous,animals |
R4186 |
T6134 |
T6132 |
prep |
of,animals |
R4187 |
T6135 |
T6136 |
amod |
interallelic,complementation |
R4188 |
T6136 |
T6134 |
pobj |
complementation,of |
R4189 |
T6137 |
T6126 |
amod |
relevant,demonstration |
R4190 |
T6138 |
T6137 |
prep |
to,relevant |
R4191 |
T6139 |
T6140 |
det |
a,disease |
R4192 |
T6140 |
T6138 |
pobj |
disease,to |
R4193 |
T6141 |
T6140 |
amod |
human,disease |
R4194 |
T6142 |
T6109 |
punct |
.,is |
R4195 |
T6144 |
T6145 |
advcl |
Keeping,is |
R4196 |
T6146 |
T6144 |
prep |
in,Keeping |
R4197 |
T6147 |
T6146 |
pobj |
mind,in |
R4198 |
T6148 |
T6149 |
mark |
that,result |
R4199 |
T6149 |
T6144 |
ccomp |
result,Keeping |
R4200 |
T6150 |
T6151 |
det |
the,alleles |
R4201 |
T6151 |
T6149 |
nsubj |
alleles,result |
R4202 |
T6152 |
T6153 |
punct |
~,"1,200" |
R4203 |
T6153 |
T6151 |
nummod |
"1,200",alleles |
R4204 |
T6154 |
T6151 |
acl |
known,alleles |
R4205 |
T6155 |
T6156 |
aux |
to,exist |
R4206 |
T6156 |
T6154 |
xcomp |
exist,known |
R4207 |
T6157 |
T6156 |
prep |
for,exist |
R4208 |
T6158 |
T6159 |
det |
the,gene |
R4209 |
T6159 |
T6157 |
pobj |
gene,for |
R4210 |
T6160 |
T6159 |
compound |
CTRF,gene |
R4211 |
T6161 |
T6159 |
acl |
implicated,gene |
R4212 |
T6162 |
T6161 |
prep |
in,implicated |
R4213 |
T6163 |
T6164 |
det |
the,disorder |
R4214 |
T6164 |
T6162 |
pobj |
disorder,in |
R4215 |
T6165 |
T6164 |
amod |
common,disorder |
R4216 |
T6166 |
T6164 |
amod |
autosomal,disorder |
R4217 |
T6167 |
T6164 |
amod |
recessive,disorder |
R4218 |
T6168 |
T6169 |
amod |
cystic,fibrosis |
R4219 |
T6169 |
T6164 |
appos |
fibrosis,disorder |
R4220 |
T6170 |
T6161 |
advmod |
alone,implicated |
R4221 |
T6171 |
T6172 |
punct |
[,29 |
R4222 |
T6172 |
T6154 |
parataxis |
29,known |
R4223 |
T6173 |
T6172 |
punct |
],29 |
R4224 |
T6174 |
T6149 |
aux |
can,result |
R4225 |
T6175 |
T6149 |
advmod |
theoretically,result |
R4226 |
T6176 |
T6149 |
prep |
in,result |
R4227 |
T6177 |
T6178 |
punct |
~,"700,000" |
R4228 |
T6178 |
T6179 |
nummod |
"700,000",combinations |
R4229 |
T6179 |
T6176 |
pobj |
combinations,in |
R4230 |
T6180 |
T6179 |
amod |
different,combinations |
R4231 |
T6181 |
T6179 |
amod |
allelic,combinations |
R4232 |
T6182 |
T6145 |
punct |
", ",is |
R4233 |
T6183 |
T6184 |
det |
the,number |
R4234 |
T6184 |
T6145 |
nsubj |
number,is |
R4235 |
T6185 |
T6184 |
amod |
potential,number |
R4236 |
T6186 |
T6184 |
prep |
of,number |
R4237 |
T6187 |
T6188 |
amod |
allelic,combinations |
R4238 |
T6188 |
T6186 |
pobj |
combinations,of |
R4239 |
T6189 |
T6188 |
prep |
of,combinations |
R4240 |
T6190 |
T6191 |
amod |
different,mutations |
R4241 |
T6191 |
T6189 |
pobj |
mutations,of |
R4242 |
T6192 |
T6191 |
amod |
recessive,mutations |
R4243 |
T6193 |
T6191 |
cc |
and,mutations |
R4244 |
T6194 |
T6195 |
amod |
single,polymorphisms |
R4245 |
T6195 |
T6191 |
conj |
polymorphisms,mutations |
R4246 |
T6196 |
T6195 |
compound |
nucleotide,polymorphisms |
R4247 |
T6197 |
T6198 |
npadvmod |
genome,wide |
R4248 |
T6198 |
T6184 |
amod |
wide,number |
R4249 |
T6199 |
T6198 |
punct |
-,wide |
R4250 |
T6200 |
T6145 |
advmod |
currently,is |
R4251 |
T6201 |
T6145 |
acomp |
incalculable,is |
R4252 |
T6202 |
T6145 |
punct |
.,is |
R4253 |
T6204 |
T6205 |
nsubj |
We,suggest |
R4254 |
T6206 |
T6207 |
amod |
biallelic,effects |
R4255 |
T6207 |
T6205 |
dobj |
effects,suggest |
R4256 |
T6208 |
T6205 |
prep |
as,suggest |
R4257 |
T6209 |
T6210 |
det |
a,variable |
R4258 |
T6210 |
T6208 |
pobj |
variable,as |
R4259 |
T6211 |
T6212 |
advmod |
previously,underestimated |
R4260 |
T6212 |
T6213 |
amod |
underestimated,important |
R4261 |
T6213 |
T6210 |
amod |
important,variable |
R4262 |
T6214 |
T6213 |
advmod |
yet,important |
R4263 |
T6215 |
T6205 |
prep |
in,suggest |
R4264 |
T6216 |
T6215 |
pcomp |
considering,in |
R4265 |
T6217 |
T6218 |
compound |
genotype,phenotype |
R4266 |
T6218 |
T6220 |
compound |
phenotype,relationships |
R4267 |
T6219 |
T6218 |
punct |
–,phenotype |
R4268 |
T6220 |
T6216 |
dobj |
relationships,considering |
R4269 |
T6221 |
T6216 |
prep |
from,considering |
R4270 |
T6222 |
T6223 |
amod |
autosomal,disease |
R4271 |
T6223 |
T6221 |
pobj |
disease,from |
R4272 |
T6224 |
T6223 |
amod |
recessive,disease |
R4273 |
T6225 |
T6221 |
prep |
to,from |
R4274 |
T6226 |
T6227 |
amod |
normal,diversity |
R4275 |
T6227 |
T6225 |
pobj |
diversity,to |
R4276 |
T6228 |
T6227 |
amod |
phenotypic,diversity |
R4277 |
T6229 |
T6216 |
prep |
in,considering |
R4278 |
T6230 |
T6229 |
pobj |
mammals,in |
R4279 |
T6231 |
T6205 |
punct |
.,suggest |
R4280 |
T6233 |
T6234 |
nsubj |
Extension,implies |
R4281 |
T6235 |
T6233 |
prep |
of,Extension |
R4282 |
T6236 |
T6237 |
det |
the,concept |
R4283 |
T6237 |
T6235 |
pobj |
concept,of |
R4284 |
T6238 |
T6237 |
amod |
above,concept |
R4285 |
T6239 |
T6240 |
mark |
that,enter |
R4286 |
T6240 |
T6234 |
ccomp |
enter,implies |
R4287 |
T6241 |
T6242 |
amod |
recessive,mutations |
R4288 |
T6242 |
T6240 |
nsubj |
mutations,enter |
R4289 |
T6243 |
T6240 |
aux |
can,enter |
R4290 |
T6244 |
T6245 |
amod |
evolutionary,selection |
R4291 |
T6245 |
T6240 |
dobj |
selection,enter |
R4292 |
T6246 |
T6240 |
prep |
in,enter |
R4293 |
T6247 |
T6246 |
pobj |
F1,in |
R4294 |
T6248 |
T6240 |
prep |
provided,enter |
R4295 |
T6249 |
T6250 |
mark |
that,carries |
R4296 |
T6250 |
T6248 |
pcomp |
carries,provided |
R4297 |
T6251 |
T6252 |
det |
the,allele |
R4298 |
T6252 |
T6250 |
nsubj |
allele,carries |
R4299 |
T6253 |
T6252 |
amod |
second,allele |
R4300 |
T6254 |
T6255 |
det |
a,alteration |
R4301 |
T6255 |
T6250 |
dobj |
alteration,carries |
R4302 |
T6256 |
T6255 |
amod |
different,alteration |
R4303 |
T6257 |
T6255 |
amod |
recessive,alteration |
R4304 |
T6258 |
T6234 |
punct |
.,implies |
R4305 |
T6260 |
T6261 |
advmod |
Finally,highlight |
R4306 |
T6262 |
T6261 |
punct |
", ",highlight |
R4307 |
T6263 |
T6264 |
poss |
our,data |
R4308 |
T6264 |
T6261 |
nsubj |
data,highlight |
R4309 |
T6265 |
T6266 |
det |
the,potential |
R4310 |
T6266 |
T6261 |
dobj |
potential,highlight |
R4311 |
T6267 |
T6266 |
prep |
of,potential |
R4312 |
T6268 |
T6269 |
advmod |
clinically,relevant |
R4313 |
T6269 |
T6270 |
amod |
relevant,alleles |
R4314 |
T6270 |
T6267 |
pobj |
alleles,of |
R4315 |
T6271 |
T6272 |
advmod |
previously,designated |
R4316 |
T6272 |
T6270 |
acl |
designated,alleles |
R4317 |
T6273 |
T6272 |
prep |
as,designated |
R4318 |
T6274 |
T6273 |
amod |
null,as |
R4319 |
T6275 |
T6270 |
punct |
", ",alleles |
R4320 |
T6276 |
T6270 |
prep |
with,alleles |
R4321 |
T6277 |
T6278 |
amod |
little,expression |
R4322 |
T6278 |
T6276 |
pobj |
expression,with |
R4323 |
T6279 |
T6277 |
cc |
or,little |
R4324 |
T6280 |
T6277 |
conj |
no,little |
R4325 |
T6281 |
T6278 |
amod |
detectable,expression |
R4326 |
T6282 |
T6278 |
cc |
or,expression |
R4327 |
T6283 |
T6278 |
conj |
activity,expression |
R4328 |
T6284 |
T6266 |
punct |
", ",potential |
R4329 |
T6285 |
T6286 |
aux |
to,contribute |
R4330 |
T6286 |
T6266 |
acl |
contribute,potential |
R4331 |
T6287 |
T6286 |
advmod |
nonetheless,contribute |
R4332 |
T6288 |
T6286 |
prep |
to,contribute |
R4333 |
T6289 |
T6288 |
pobj |
phenotype,to |
R4334 |
T6290 |
T6261 |
punct |
.,highlight |
R4335 |
T6365 |
T6364 |
cc |
and,Derivation |
R4336 |
T6366 |
T6364 |
conj |
analysis,Derivation |
R4337 |
T6367 |
T6364 |
prep |
of,Derivation |
R4338 |
T6368 |
T6369 |
amod |
mutant,mice |
R4339 |
T6369 |
T6367 |
pobj |
mice,of |
R4340 |
T6370 |
T6364 |
punct |
.,Derivation |
R4341 |
T6372 |
T6373 |
nsubjpass |
Generation,described |
R4342 |
T6374 |
T6372 |
prep |
of,Generation |
R4343 |
T6375 |
T6376 |
nmod |
XpdTTD,mice |
R4344 |
T6376 |
T6374 |
pobj |
mice,of |
R4345 |
T6377 |
T6378 |
punct |
(,XPDR722W |
R4346 |
T6378 |
T6375 |
parataxis |
XPDR722W,XpdTTD |
R4347 |
T6379 |
T6378 |
punct |
),XPDR722W |
R4348 |
T6380 |
T6375 |
cc |
and,XpdTTD |
R4349 |
T6381 |
T6382 |
compound |
XpdTTD,KO |
R4350 |
T6382 |
T6375 |
conj |
KO,XpdTTD |
R4351 |
T6383 |
T6382 |
punct |
/,KO |
R4352 |
T6384 |
T6373 |
aux |
has,described |
R4353 |
T6385 |
T6373 |
auxpass |
been,described |
R4354 |
T6386 |
T6373 |
advmod |
previously,described |
R4355 |
T6387 |
T6388 |
punct |
[,22 |
R4356 |
T6388 |
T6373 |
parataxis |
22,described |
R4357 |
T6389 |
T6388 |
nummod |
21,22 |
R4358 |
T6390 |
T6388 |
punct |
",",22 |
R4359 |
T6391 |
T6388 |
punct |
],22 |
R4360 |
T6392 |
T6373 |
punct |
.,described |
R4361 |
T6394 |
T6395 |
det |
A,description |
R4362 |
T6395 |
T6397 |
nsubjpass |
description,provided |
R4363 |
T6396 |
T6395 |
amod |
detailed,description |
R4364 |
T6398 |
T6395 |
prep |
of,description |
R4365 |
T6399 |
T6400 |
det |
the,generation |
R4366 |
T6400 |
T6398 |
pobj |
generation,of |
R4367 |
T6401 |
T6400 |
prep |
of,generation |
R4368 |
T6402 |
T6403 |
amod |
targeting,constructs |
R4369 |
T6403 |
T6401 |
pobj |
constructs,of |
R4370 |
T6404 |
T6403 |
prep |
for,constructs |
R4371 |
T6405 |
T6406 |
nmod |
Xpd†XPCS,alleles |
R4372 |
T6406 |
T6404 |
pobj |
alleles,for |
R4373 |
T6407 |
T6405 |
cc |
and,Xpd†XPCS |
R4374 |
T6408 |
T6405 |
conj |
Xpd †XP,Xpd†XPCS |
R4375 |
T6409 |
T6406 |
acl |
carrying,alleles |
R4376 |
T6410 |
T6409 |
dobj |
mutations,carrying |
R4377 |
T6411 |
T6410 |
acl |
encoding,mutations |
R4378 |
T6412 |
T6413 |
det |
the,alterations |
R4379 |
T6413 |
T6411 |
dobj |
alterations,encoding |
R4380 |
T6414 |
T6413 |
nmod |
G602D,alterations |
R4381 |
T6415 |
T6414 |
cc |
and,G602D |
R4382 |
T6416 |
T6414 |
conj |
R683W,G602D |
R4383 |
T6417 |
T6397 |
aux |
will,provided |
R4384 |
T6418 |
T6397 |
auxpass |
be,provided |
R4385 |
T6419 |
T6397 |
prep |
upon,provided |
R4386 |
T6420 |
T6419 |
pobj |
request,upon |
R4387 |
T6421 |
T6397 |
punct |
.,provided |
R4388 |
T6423 |
T6424 |
amod |
Chimeric,fibroblasts |
R4389 |
T6424 |
T6429 |
nsubjpass |
fibroblasts,generated |
R4390 |
T6425 |
T6424 |
nmod |
mice,fibroblasts |
R4391 |
T6426 |
T6425 |
cc |
and,mice |
R4392 |
T6427 |
T6428 |
npadvmod |
mouse,embryonic |
R4393 |
T6428 |
T6425 |
conj |
embryonic,mice |
R4394 |
T6430 |
T6429 |
auxpass |
were,generated |
R4395 |
T6431 |
T6429 |
prep |
according,generated |
R4396 |
T6432 |
T6431 |
prep |
to,according |
R4397 |
T6433 |
T6434 |
amod |
standard,procedures |
R4398 |
T6434 |
T6432 |
pobj |
procedures,to |
R4399 |
T6435 |
T6429 |
punct |
.,generated |
R4400 |
T6437 |
T6438 |
nmod |
Haematoxylin,staining |
R4401 |
T6438 |
T6441 |
nsubjpass |
staining,performed |
R4402 |
T6439 |
T6437 |
cc |
and,Haematoxylin |
R4403 |
T6440 |
T6437 |
conj |
eosin,Haematoxylin |
R4404 |
T6442 |
T6441 |
auxpass |
was,performed |
R4405 |
T6443 |
T6441 |
prep |
according,performed |
R4406 |
T6444 |
T6443 |
prep |
to,according |
R4407 |
T6445 |
T6446 |
amod |
standard,procedures |
R4408 |
T6446 |
T6444 |
pobj |
procedures,to |
R4409 |
T6447 |
T6441 |
punct |
.,performed |
R4410 |
T6449 |
T6450 |
compound |
Amino,acid |
R4411 |
T6450 |
T6451 |
compound |
acid,analysis |
R4412 |
T6451 |
T6452 |
nsubjpass |
analysis,conducted |
R4413 |
T6453 |
T6452 |
auxpass |
was,conducted |
R4414 |
T6454 |
T6455 |
mark |
as,described |
R4415 |
T6455 |
T6452 |
advcl |
described,conducted |
R4416 |
T6456 |
T6455 |
prep |
in,described |
R4417 |
T6457 |
T6456 |
punct |
[,in |
R4418 |
T6458 |
T6456 |
pobj |
21,in |
R4419 |
T6459 |
T6452 |
punct |
],conducted |
R4420 |
T6460 |
T6452 |
punct |
.,conducted |
R4421 |
T6462 |
T6463 |
compound |
Blood,values |
R4422 |
T6463 |
T6464 |
nsubjpass |
values,analysed |
R4423 |
T6465 |
T6464 |
auxpass |
were,analysed |
R4424 |
T6466 |
T6464 |
advcl |
using,analysed |
R4425 |
T6467 |
T6468 |
nmod |
Animal,Vet |
R4426 |
T6468 |
T6466 |
dobj |
Vet,using |
R4427 |
T6469 |
T6468 |
nmod |
Blood,Vet |
R4428 |
T6470 |
T6468 |
amod |
Counter,Vet |
R4429 |
T6471 |
T6472 |
punct |
(,Diagnostix |
R4430 |
T6472 |
T6468 |
parataxis |
Diagnostix,Vet |
R4431 |
T6473 |
T6472 |
compound |
ABX,Diagnostix |
R4432 |
T6474 |
T6472 |
punct |
", ",Diagnostix |
R4433 |
T6475 |
T6472 |
npadvmod |
Montpellier,Diagnostix |
R4434 |
T6476 |
T6472 |
punct |
", ",Diagnostix |
R4435 |
T6477 |
T6472 |
npadvmod |
France,Diagnostix |
R4436 |
T6478 |
T6472 |
punct |
),Diagnostix |
R4437 |
T6479 |
T6464 |
punct |
.,analysed |
R4438 |
T6481 |
T6482 |
nsubjpass |
Radiographs,taken |
R4439 |
T6483 |
T6482 |
auxpass |
were,taken |
R4440 |
T6484 |
T6482 |
punct |
", ",taken |
R4441 |
T6485 |
T6482 |
cc |
and,taken |
R4442 |
T6486 |
T6487 |
amod |
relative,density |
R4443 |
T6487 |
T6490 |
nsubjpass |
density,calculated |
R4444 |
T6488 |
T6489 |
compound |
bone,mineral |
R4445 |
T6489 |
T6487 |
compound |
mineral,density |
R4446 |
T6490 |
T6482 |
conj |
calculated,taken |
R4447 |
T6491 |
T6490 |
auxpass |
was,calculated |
R4448 |
T6492 |
T6493 |
mark |
as,described |
R4449 |
T6493 |
T6490 |
advcl |
described,calculated |
R4450 |
T6494 |
T6493 |
prep |
in,described |
R4451 |
T6495 |
T6494 |
punct |
[,in |
R4452 |
T6496 |
T6494 |
pobj |
15,in |
R4453 |
T6497 |
T6490 |
punct |
],calculated |
R4454 |
T6498 |
T6490 |
punct |
.,calculated |
R4455 |
T6500 |
T6501 |
nsubj |
Mice,were |
R4456 |
T6502 |
T6500 |
acl |
used,Mice |
R4457 |
T6503 |
T6502 |
prep |
in,used |
R4458 |
T6504 |
T6505 |
det |
this,study |
R4459 |
T6505 |
T6503 |
pobj |
study,in |
R4460 |
T6506 |
T6501 |
prep |
in,were |
R4461 |
T6507 |
T6508 |
det |
a,background |
R4462 |
T6508 |
T6506 |
pobj |
background,in |
R4463 |
T6509 |
T6510 |
nmod |
129Ola,C57BL6 |
R4464 |
T6510 |
T6508 |
nmod |
C57BL6,background |
R4465 |
T6511 |
T6510 |
punct |
/,C57BL6 |
R4466 |
T6512 |
T6508 |
amod |
mixed,background |
R4467 |
T6513 |
T6514 |
mark |
unless,noted |
R4468 |
T6514 |
T6501 |
advcl |
noted,were |
R4469 |
T6515 |
T6514 |
advmod |
differently,noted |
R4470 |
T6516 |
T6501 |
punct |
.,were |
R4471 |
T6518 |
T6519 |
det |
All,experiments |
R4472 |
T6519 |
T6520 |
nsubjpass |
experiments,judged |
R4473 |
T6521 |
T6519 |
acl |
involving,experiments |
R4474 |
T6522 |
T6521 |
dobj |
mice,involving |
R4475 |
T6523 |
T6520 |
auxpass |
were,judged |
R4476 |
T6524 |
T6520 |
cc |
and,judged |
R4477 |
T6525 |
T6520 |
conj |
approved,judged |
R4478 |
T6526 |
T6525 |
agent |
by,approved |
R4479 |
T6527 |
T6528 |
det |
the,committee |
R4480 |
T6528 |
T6526 |
pobj |
committee,by |
R4481 |
T6529 |
T6528 |
amod |
national,committee |
R4482 |
T6530 |
T6528 |
prep |
for,committee |
R4483 |
T6531 |
T6532 |
amod |
genetic,identification |
R4484 |
T6532 |
T6530 |
pobj |
identification,for |
R4485 |
T6533 |
T6532 |
prep |
of,identification |
R4486 |
T6534 |
T6533 |
pobj |
organisms,of |
R4487 |
T6535 |
T6528 |
cc |
and,committee |
R4488 |
T6536 |
T6537 |
det |
the,committee |
R4489 |
T6537 |
T6528 |
conj |
committee,committee |
R4490 |
T6538 |
T6537 |
nmod |
animal,committee |
R4491 |
T6539 |
T6537 |
amod |
ethical,committee |
R4492 |
T6540 |
T6520 |
punct |
", ",judged |
R4493 |
T6541 |
T6520 |
cc |
and,judged |
R4494 |
T6542 |
T6543 |
auxpass |
were,conducted |
R4495 |
T6543 |
T6520 |
conj |
conducted,judged |
R4496 |
T6544 |
T6543 |
prep |
according,conducted |
R4497 |
T6545 |
T6544 |
prep |
to,according |
R4498 |
T6546 |
T6547 |
amod |
national,guidelines |
R4499 |
T6547 |
T6545 |
pobj |
guidelines,to |
R4500 |
T6548 |
T6546 |
cc |
and,national |
R4501 |
T6549 |
T6546 |
conj |
international,national |
R4502 |
T6550 |
T6520 |
punct |
.,judged |
R4503 |
T6587 |
T6588 |
compound |
UV,sensitivity |
R4504 |
T6589 |
T6588 |
punct |
", ",sensitivity |
R4505 |
T6590 |
T6591 |
nmod |
UV,UDS |
R4506 |
T6591 |
T6593 |
nmod |
UDS,activity |
R4507 |
T6592 |
T6591 |
punct |
-,UDS |
R4508 |
T6593 |
T6588 |
appos |
activity,sensitivity |
R4509 |
T6594 |
T6591 |
punct |
", ",UDS |
R4510 |
T6595 |
T6596 |
compound |
UV,RRS |
R4511 |
T6596 |
T6591 |
conj |
RRS,UDS |
R4512 |
T6597 |
T6596 |
punct |
-,RRS |
R4513 |
T6598 |
T6596 |
punct |
", ",RRS |
R4514 |
T6599 |
T6596 |
cc |
and,RRS |
R4515 |
T6600 |
T6596 |
conj |
TFIIH,RRS |
R4516 |
T6601 |
T6602 |
compound |
incision,excision |
R4517 |
T6602 |
T6593 |
compound |
excision,activity |
R4518 |
T6603 |
T6602 |
punct |
/,excision |
R4519 |
T6604 |
T6588 |
punct |
.,sensitivity |
R4520 |
T6606 |
T6607 |
nmod |
UV,survival |
R4521 |
T6607 |
T6608 |
nmod |
survival,assays |
R4522 |
T6608 |
T6618 |
nsubjpass |
assays,performed |
R4523 |
T6609 |
T6607 |
punct |
", ",survival |
R4524 |
T6610 |
T6611 |
compound |
UV,UDS |
R4525 |
T6611 |
T6607 |
conj |
UDS,survival |
R4526 |
T6612 |
T6611 |
punct |
-,UDS |
R4527 |
T6613 |
T6611 |
punct |
", ",UDS |
R4528 |
T6614 |
T6611 |
cc |
and,UDS |
R4529 |
T6615 |
T6616 |
compound |
UV,RRS |
R4530 |
T6616 |
T6611 |
conj |
RRS,UDS |
R4531 |
T6617 |
T6616 |
punct |
-,RRS |
R4532 |
T6619 |
T6618 |
auxpass |
were,performed |
R4533 |
T6620 |
T6621 |
mark |
as,described |
R4534 |
T6621 |
T6618 |
advcl |
described,performed |
R4535 |
T6622 |
T6621 |
advmod |
previously,described |
R4536 |
T6623 |
T6624 |
punct |
[,30 |
R4537 |
T6624 |
T6618 |
parataxis |
30,performed |
R4538 |
T6625 |
T6624 |
nummod |
21,30 |
R4539 |
T6626 |
T6624 |
punct |
",",30 |
R4540 |
T6627 |
T6624 |
punct |
],30 |
R4541 |
T6628 |
T6618 |
punct |
.,performed |
R4542 |
T6630 |
T6631 |
prep |
For,presented |
R4543 |
T6632 |
T6633 |
compound |
UV,RRS |
R4544 |
T6633 |
T6630 |
pobj |
RRS,For |
R4545 |
T6634 |
T6633 |
punct |
-,RRS |
R4546 |
T6635 |
T6631 |
punct |
", ",presented |
R4547 |
T6636 |
T6637 |
amod |
average,values |
R4548 |
T6637 |
T6631 |
nsubjpass |
values,presented |
R4549 |
T6638 |
T6637 |
prep |
from,values |
R4550 |
T6639 |
T6640 |
det |
the,experiment |
R4551 |
T6640 |
T6638 |
pobj |
experiment,from |
R4552 |
T6641 |
T6640 |
amod |
representative,experiment |
R4553 |
T6642 |
T6640 |
acl |
containing,experiment |
R4554 |
T6643 |
T6644 |
nummod |
two,wt |
R4555 |
T6644 |
T6645 |
nmod |
wt,line |
R4556 |
T6645 |
T6642 |
dobj |
line,containing |
R4557 |
T6646 |
T6644 |
punct |
", ",wt |
R4558 |
T6647 |
T6648 |
nummod |
three,TTD |
R4559 |
T6648 |
T6644 |
conj |
TTD,wt |
R4560 |
T6649 |
T6648 |
compound |
XpdTTD,TTD |
R4561 |
T6650 |
T6648 |
punct |
/,TTD |
R4562 |
T6651 |
T6648 |
punct |
", ",TTD |
R4563 |
T6652 |
T6653 |
nummod |
two,XPCS |
R4564 |
T6653 |
T6648 |
conj |
XPCS,TTD |
R4565 |
T6654 |
T6653 |
compound |
XpdTTD,XPCS |
R4566 |
T6655 |
T6653 |
punct |
/,XPCS |
R4567 |
T6656 |
T6653 |
punct |
", ",XPCS |
R4568 |
T6657 |
T6653 |
cc |
and,XPCS |
R4569 |
T6658 |
T6659 |
nummod |
one,XP |
R4570 |
T6659 |
T6653 |
conj |
XP,XPCS |
R4571 |
T6660 |
T6659 |
compound |
XpdTTD,XP |
R4572 |
T6661 |
T6659 |
punct |
/,XP |
R4573 |
T6662 |
T6645 |
compound |
cell,line |
R4574 |
T6663 |
T6631 |
auxpass |
are,presented |
R4575 |
T6664 |
T6631 |
punct |
.,presented |
R4576 |
T6666 |
T6667 |
det |
The,value |
R4577 |
T6667 |
T6674 |
nsubj |
value,differs |
R4578 |
T6668 |
T6669 |
punct |
~,48 |
R4579 |
T6669 |
T6670 |
nummod |
48,% |
R4580 |
T6670 |
T6667 |
compound |
%,value |
R4581 |
T6671 |
T6672 |
compound |
UV,UDS |
R4582 |
T6672 |
T6667 |
compound |
UDS,value |
R4583 |
T6673 |
T6672 |
punct |
-,UDS |
R4584 |
T6675 |
T6667 |
acl |
presented,value |
R4585 |
T6676 |
T6675 |
prep |
in,presented |
R4586 |
T6677 |
T6678 |
det |
this,study |
R4587 |
T6678 |
T6676 |
pobj |
study,in |
R4588 |
T6679 |
T6667 |
prep |
for,value |
R4589 |
T6680 |
T6681 |
compound |
XpdTTD,TTD |
R4590 |
T6681 |
T6683 |
compound |
TTD,cells |
R4591 |
T6682 |
T6681 |
punct |
/,TTD |
R4592 |
T6683 |
T6679 |
pobj |
cells,for |
R4593 |
T6684 |
T6674 |
prep |
from,differs |
R4594 |
T6685 |
T6686 |
poss |
our,data |
R4595 |
T6686 |
T6684 |
pobj |
data,from |
R4596 |
T6687 |
T6688 |
advmod |
previously,published |
R4597 |
T6688 |
T6686 |
amod |
published,data |
R4598 |
T6689 |
T6686 |
prep |
of,data |
R4599 |
T6690 |
T6691 |
nummod |
25,% |
R4600 |
T6691 |
T6692 |
compound |
%,UDS |
R4601 |
T6692 |
T6689 |
pobj |
UDS,of |
R4602 |
T6693 |
T6692 |
compound |
UV,UDS |
R4603 |
T6694 |
T6692 |
punct |
-,UDS |
R4604 |
T6695 |
T6696 |
punct |
[,21 |
R4605 |
T6696 |
T6674 |
parataxis |
21,differs |
R4606 |
T6697 |
T6696 |
punct |
],21 |
R4607 |
T6698 |
T6674 |
punct |
", ",differs |
R4608 |
T6699 |
T6700 |
advmod |
possibly,because |
R4609 |
T6700 |
T6674 |
prep |
because,differs |
R4610 |
T6701 |
T6700 |
prep |
of,because |
R4611 |
T6702 |
T6703 |
det |
the,variability |
R4612 |
T6703 |
T6701 |
pobj |
variability,of |
R4613 |
T6704 |
T6703 |
amod |
high,variability |
R4614 |
T6705 |
T6703 |
amod |
intrinsic,variability |
R4615 |
T6706 |
T6705 |
prep |
to,intrinsic |
R4616 |
T6707 |
T6708 |
det |
the,assay |
R4617 |
T6708 |
T6706 |
pobj |
assay,to |
R4618 |
T6709 |
T6708 |
cc |
or,assay |
R4619 |
T6710 |
T6711 |
amod |
routine,variations |
R4620 |
T6711 |
T6708 |
conj |
variations,assay |
R4621 |
T6712 |
T6708 |
prep |
in,assay |
R4622 |
T6713 |
T6714 |
det |
the,conditions |
R4623 |
T6714 |
T6712 |
pobj |
conditions,in |
R4624 |
T6715 |
T6716 |
compound |
cell,culture |
R4625 |
T6716 |
T6714 |
compound |
culture,conditions |
R4626 |
T6717 |
T6674 |
punct |
.,differs |
R4627 |
T6719 |
T6720 |
prep |
For,prepared |
R4628 |
T6721 |
T6722 |
det |
the,assay |
R4629 |
T6722 |
T6719 |
pobj |
assay,For |
R4630 |
T6723 |
T6724 |
compound |
incision,excision |
R4631 |
T6724 |
T6722 |
compound |
excision,assay |
R4632 |
T6725 |
T6724 |
punct |
/,excision |
R4633 |
T6726 |
T6722 |
compound |
activity,assay |
R4634 |
T6727 |
T6720 |
punct |
", ",prepared |
R4635 |
T6728 |
T6729 |
amod |
recombinant,TFIIH |
R4636 |
T6729 |
T6720 |
nsubjpass |
TFIIH,prepared |
R4637 |
T6730 |
T6720 |
auxpass |
was,prepared |
R4638 |
T6731 |
T6720 |
cc |
and,prepared |
R4639 |
T6732 |
T6720 |
conj |
assayed,prepared |
R4640 |
T6733 |
T6734 |
mark |
as,described |
R4641 |
T6734 |
T6732 |
advcl |
described,assayed |
R4642 |
T6735 |
T6734 |
advmod |
previously,described |
R4643 |
T6736 |
T6737 |
punct |
[,27 |
R4644 |
T6737 |
T6732 |
parataxis |
27,assayed |
R4645 |
T6738 |
T6737 |
punct |
],27 |
R4646 |
T6739 |
T6720 |
punct |
.,prepared |
R4649 |
T6770 |
T6771 |
amod |
Comparative,immunofluorescence |
R4650 |
T6772 |
T6771 |
punct |
.,immunofluorescence |
R4651 |
T6774 |
T6775 |
compound |
Latex,labelling |
R4652 |
T6775 |
T6777 |
nsubjpass |
labelling,performed |
R4653 |
T6776 |
T6775 |
compound |
bead,labelling |
R4654 |
T6778 |
T6775 |
cc |
and,labelling |
R4655 |
T6779 |
T6780 |
amod |
comparative,analysis |
R4656 |
T6780 |
T6775 |
conj |
analysis,labelling |
R4657 |
T6781 |
T6780 |
compound |
immunofluorescence,analysis |
R4658 |
T6782 |
T6780 |
prep |
of,analysis |
R4659 |
T6783 |
T6784 |
det |
the,subunit |
R4660 |
T6784 |
T6782 |
pobj |
subunit,of |
R4661 |
T6785 |
T6784 |
compound |
p62,subunit |
R4662 |
T6786 |
T6784 |
prep |
of,subunit |
R4663 |
T6787 |
T6788 |
det |
the,TFIIH |
R4664 |
T6788 |
T6786 |
pobj |
TFIIH,of |
R4665 |
T6789 |
T6777 |
auxpass |
was,performed |
R4666 |
T6790 |
T6791 |
mark |
as,described |
R4667 |
T6791 |
T6777 |
advcl |
described,performed |
R4668 |
T6792 |
T6791 |
advmod |
previously,described |
R4669 |
T6793 |
T6794 |
punct |
[,17 |
R4670 |
T6794 |
T6791 |
parataxis |
17,described |
R4671 |
T6795 |
T6794 |
nummod |
16,17 |
R4672 |
T6796 |
T6794 |
punct |
",",17 |
R4673 |
T6797 |
T6794 |
punct |
],17 |
R4674 |
T6798 |
T6777 |
advcl |
using,performed |
R4675 |
T6799 |
T6800 |
amod |
primary,fibroblasts |
R4676 |
T6800 |
T6798 |
dobj |
fibroblasts,using |
R4677 |
T6801 |
T6800 |
nmod |
mouse,fibroblasts |
R4678 |
T6802 |
T6800 |
amod |
embryonic,fibroblasts |
R4679 |
T6803 |
T6798 |
prep |
at,using |
R4680 |
T6804 |
T6805 |
nmod |
passages,2 |
R4681 |
T6805 |
T6803 |
pobj |
2,at |
R4682 |
T6806 |
T6807 |
punct |
–,5 |
R4683 |
T6807 |
T6805 |
prep |
5,2 |
R4684 |
T6808 |
T6777 |
punct |
.,performed |
R4685 |
T6810 |
T6811 |
nummod |
Two,lines |
R4686 |
T6811 |
T6815 |
nsubjpass |
lines,used |
R4687 |
T6812 |
T6810 |
cc |
or,Two |
R4688 |
T6813 |
T6810 |
conj |
more,Two |
R4689 |
T6814 |
T6811 |
compound |
cell,lines |
R4690 |
T6816 |
T6811 |
prep |
per,lines |
R4691 |
T6817 |
T6816 |
pobj |
genotype,per |
R4692 |
T6818 |
T6819 |
punct |
(,except |
R4693 |
T6819 |
T6811 |
parataxis |
except,lines |
R4694 |
T6820 |
T6819 |
prep |
for,except |
R4695 |
T6821 |
T6822 |
det |
the,cells |
R4696 |
T6822 |
T6820 |
pobj |
cells,for |
R4697 |
T6823 |
T6824 |
compound |
XpdTTD,†XP |
R4698 |
T6824 |
T6822 |
compound |
†XP,cells |
R4699 |
T6825 |
T6824 |
punct |
/,†XP |
R4700 |
T6826 |
T6822 |
punct |
", ",cells |
R4701 |
T6827 |
T6828 |
prep |
in,used |
R4702 |
T6828 |
T6822 |
relcl |
used,cells |
R4703 |
T6829 |
T6827 |
pobj |
which,in |
R4704 |
T6830 |
T6831 |
advmod |
only,line |
R4705 |
T6831 |
T6828 |
nsubjpass |
line,used |
R4706 |
T6832 |
T6831 |
nummod |
one,line |
R4707 |
T6833 |
T6831 |
compound |
cell,line |
R4708 |
T6834 |
T6828 |
auxpass |
was,used |
R4709 |
T6835 |
T6828 |
prep |
in,used |
R4710 |
T6836 |
T6837 |
amod |
repeated,experiments |
R4711 |
T6837 |
T6835 |
pobj |
experiments,in |
R4712 |
T6838 |
T6819 |
punct |
),except |
R4713 |
T6839 |
T6815 |
auxpass |
were,used |
R4714 |
T6840 |
T6815 |
punct |
", ",used |
R4715 |
T6841 |
T6815 |
cc |
and,used |
R4716 |
T6842 |
T6843 |
nsubjpass |
experiments,repeated |
R4717 |
T6843 |
T6815 |
conj |
repeated,used |
R4718 |
T6844 |
T6843 |
auxpass |
were,repeated |
R4719 |
T6845 |
T6846 |
compound |
2,6 |
R4720 |
T6846 |
T6848 |
nummod |
6,times |
R4721 |
T6847 |
T6846 |
punct |
–,6 |
R4722 |
T6848 |
T6843 |
dobj |
times,repeated |
R4723 |
T6849 |
T6848 |
prep |
per,times |
R4724 |
T6850 |
T6849 |
pobj |
genotype,per |
R4725 |
T6851 |
T6843 |
punct |
.,repeated |
R4726 |
T7096 |
T7095 |
prep |
of,Targeting |
R4727 |
T7097 |
T7098 |
det |
the,Gene |
R4728 |
T7098 |
T7096 |
pobj |
Gene,of |
R4729 |
T7099 |
T7098 |
compound |
Mouse,Gene |
R4730 |
T7100 |
T7098 |
compound |
Xpd,Gene |
R4731 |
T7102 |
T7103 |
punct |
(,A |
R4732 |
T7103 |
T7104 |
meta |
A,representation |
R4733 |
T7105 |
T7103 |
punct |
),A |
R4734 |
T7106 |
T7104 |
amod |
Schematic,representation |
R4735 |
T7107 |
T7104 |
prep |
of,representation |
R4736 |
T7108 |
T7109 |
det |
the,structure |
R4737 |
T7109 |
T7107 |
pobj |
structure,of |
R4738 |
T7110 |
T7109 |
amod |
genomic,structure |
R4739 |
T7111 |
T7104 |
cc |
and,representation |
R4740 |
T7112 |
T7113 |
amod |
partial,map |
R4741 |
T7113 |
T7104 |
conj |
map,representation |
R4742 |
T7114 |
T7113 |
compound |
restriction,map |
R4743 |
T7115 |
T7113 |
prep |
of,map |
R4744 |
T7116 |
T7117 |
det |
the,loci |
R4745 |
T7117 |
T7115 |
pobj |
loci,of |
R4746 |
T7118 |
T7117 |
nmod |
wt,loci |
R4747 |
T7119 |
T7118 |
cc |
and,wt |
R4748 |
T7120 |
T7118 |
conj |
targeted,wt |
R4749 |
T7121 |
T7117 |
compound |
mouse,loci |
R4750 |
T7122 |
T7117 |
compound |
Xpd,loci |
R4751 |
T7123 |
T7113 |
punct |
.,map |
R4752 |
T7125 |
T7126 |
prep |
For,represented |
R4753 |
T7127 |
T7128 |
det |
the,allele |
R4754 |
T7128 |
T7125 |
pobj |
allele,For |
R4755 |
T7129 |
T7128 |
compound |
wt,allele |
R4756 |
T7130 |
T7128 |
compound |
Xpd,allele |
R4757 |
T7131 |
T7126 |
punct |
", ",represented |
R4758 |
T7132 |
T7133 |
amod |
shaded,boxes |
R4759 |
T7133 |
T7134 |
nsubj |
boxes,represent |
R4760 |
T7134 |
T7126 |
ccomp |
represent,represented |
R4761 |
T7135 |
T7136 |
amod |
coding,regions |
R4762 |
T7136 |
T7134 |
dobj |
regions,represent |
R4763 |
T7137 |
T7136 |
prep |
of,regions |
R4764 |
T7138 |
T7139 |
nmod |
exons,12 |
R4765 |
T7139 |
T7137 |
pobj |
12,of |
R4766 |
T7140 |
T7139 |
cc |
and,12 |
R4767 |
T7141 |
T7139 |
conj |
19,12 |
R4768 |
T7142 |
T7143 |
punct |
–,23 |
R4769 |
T7143 |
T7141 |
prep |
23,19 |
R4770 |
T7144 |
T7126 |
punct |
;,represented |
R4771 |
T7145 |
T7146 |
det |
the,UTR |
R4772 |
T7146 |
T7126 |
nsubjpass |
UTR,represented |
R4773 |
T7147 |
T7146 |
nummod |
3,UTR |
R4774 |
T7148 |
T7147 |
punct |
′,3 |
R4775 |
T7149 |
T7126 |
auxpass |
is,represented |
R4776 |
T7150 |
T7126 |
agent |
by,represented |
R4777 |
T7151 |
T7152 |
det |
an,box |
R4778 |
T7152 |
T7150 |
pobj |
box,by |
R4779 |
T7153 |
T7152 |
amod |
open,box |
R4780 |
T7154 |
T7126 |
punct |
.,represented |
R4781 |
T7156 |
T7157 |
nsubj |
TGA,indicates |
R4782 |
T7157 |
T7158 |
ccomp |
indicates,indicates |
R4783 |
T7159 |
T7160 |
det |
the,codon |
R4784 |
T7160 |
T7157 |
dobj |
codon,indicates |
R4785 |
T7161 |
T7160 |
amod |
translational,codon |
R4786 |
T7162 |
T7160 |
compound |
stop,codon |
R4787 |
T7163 |
T7158 |
punct |
;,indicates |
R4788 |
T7164 |
T7158 |
nsubj |
PolyA,indicates |
R4789 |
T7165 |
T7166 |
det |
the,signal |
R4790 |
T7166 |
T7158 |
dobj |
signal,indicates |
R4791 |
T7167 |
T7166 |
compound |
polyadenylation,signal |
R4792 |
T7168 |
T7158 |
punct |
.,indicates |
R4793 |
T7170 |
T7171 |
prep |
For,indicated |
R4794 |
T7172 |
T7173 |
det |
the,allele |
R4795 |
T7173 |
T7170 |
pobj |
allele,For |
R4796 |
T7174 |
T7173 |
nmod |
XpdTTD,allele |
R4797 |
T7175 |
T7173 |
amod |
targeted,allele |
R4798 |
T7176 |
T7171 |
punct |
", ",indicated |
R4799 |
T7177 |
T7178 |
det |
the,fragment |
R4800 |
T7178 |
T7171 |
nsubjpass |
fragment,indicated |
R4801 |
T7179 |
T7180 |
nummod |
194,pair |
R4802 |
T7180 |
T7178 |
nmod |
pair,fragment |
R4803 |
T7181 |
T7180 |
punct |
–,pair |
R4804 |
T7182 |
T7180 |
nmod |
base,pair |
R4805 |
T7183 |
T7180 |
punct |
(,pair |
R4806 |
T7184 |
T7180 |
appos |
bp,pair |
R4807 |
T7185 |
T7178 |
punct |
),fragment |
R4808 |
T7186 |
T7178 |
amod |
human,fragment |
R4809 |
T7187 |
T7178 |
compound |
XPD,fragment |
R4810 |
T7188 |
T7178 |
compound |
cDNA,fragment |
R4811 |
T7189 |
T7178 |
acl |
fused,fragment |
R4812 |
T7190 |
T7189 |
prep |
to,fused |
R4813 |
T7191 |
T7190 |
pobj |
exon,to |
R4814 |
T7192 |
T7191 |
nummod |
22,exon |
R4815 |
T7193 |
T7171 |
auxpass |
is,indicated |
R4816 |
T7194 |
T7171 |
prep |
as,indicated |
R4817 |
T7195 |
T7196 |
det |
a,box |
R4818 |
T7196 |
T7194 |
pobj |
box,as |
R4819 |
T7197 |
T7196 |
amod |
striped,box |
R4820 |
T7198 |
T7171 |
prep |
including,indicated |
R4821 |
T7199 |
T7200 |
det |
the,mutation |
R4822 |
T7200 |
T7198 |
pobj |
mutation,including |
R4823 |
T7201 |
T7200 |
nmod |
TTD,mutation |
R4824 |
T7202 |
T7203 |
punct |
(,R722W |
R4825 |
T7203 |
T7201 |
parataxis |
R722W,TTD |
R4826 |
T7204 |
T7203 |
punct |
),R722W |
R4827 |
T7205 |
T7200 |
acl |
indicated,mutation |
R4828 |
T7206 |
T7205 |
agent |
by,indicated |
R4829 |
T7207 |
T7208 |
det |
a,arrow |
R4830 |
T7208 |
T7206 |
pobj |
arrow,by |
R4831 |
T7209 |
T7208 |
amod |
vertical,arrow |
R4832 |
T7210 |
T7171 |
punct |
.,indicated |
R4833 |
T7212 |
T7213 |
nmod |
Chicken,2 |
R4834 |
T7213 |
T7218 |
nsubjpass |
2,indicated |
R4835 |
T7214 |
T7215 |
nmod |
β,globin |
R4836 |
T7215 |
T7213 |
nmod |
globin,2 |
R4837 |
T7216 |
T7215 |
punct |
-,globin |
R4838 |
T7217 |
T7213 |
nmod |
exons,2 |
R4839 |
T7219 |
T7213 |
cc |
and,2 |
R4840 |
T7220 |
T7213 |
conj |
3,2 |
R4841 |
T7221 |
T7213 |
prep |
including,2 |
R4842 |
T7222 |
T7223 |
det |
the,UTR |
R4843 |
T7223 |
T7221 |
pobj |
UTR,including |
R4844 |
T7224 |
T7223 |
nummod |
3,UTR |
R4845 |
T7225 |
T7224 |
punct |
′,3 |
R4846 |
T7226 |
T7218 |
auxpass |
are,indicated |
R4847 |
T7227 |
T7218 |
prep |
as,indicated |
R4848 |
T7228 |
T7229 |
amod |
black,boxes |
R4849 |
T7229 |
T7227 |
pobj |
boxes,as |
R4850 |
T7230 |
T7229 |
prep |
with,boxes |
R4851 |
T7231 |
T7232 |
amod |
corresponding,numerals |
R4852 |
T7232 |
T7230 |
pobj |
numerals,with |
R4853 |
T7233 |
T7232 |
compound |
Roman,numerals |
R4854 |
T7234 |
T7232 |
acl |
followed,numerals |
R4855 |
T7235 |
T7234 |
agent |
by,followed |
R4856 |
T7236 |
T7237 |
det |
the,signal |
R4857 |
T7237 |
T7235 |
pobj |
signal,by |
R4858 |
T7238 |
T7239 |
compound |
β,globin |
R4859 |
T7239 |
T7237 |
compound |
globin,signal |
R4860 |
T7240 |
T7239 |
punct |
-,globin |
R4861 |
T7241 |
T7237 |
compound |
polyadenylation,signal |
R4862 |
T7242 |
T7243 |
punct |
(,PolyA* |
R4863 |
T7243 |
T7237 |
parataxis |
PolyA*,signal |
R4864 |
T7244 |
T7243 |
punct |
),PolyA* |
R4865 |
T7245 |
T7218 |
punct |
.,indicated |
R4866 |
T7247 |
T7248 |
prep |
For,indicate |
R4867 |
T7249 |
T7250 |
det |
the,alleles |
R4868 |
T7250 |
T7247 |
pobj |
alleles,For |
R4869 |
T7251 |
T7250 |
nmod |
Xpd†XP,alleles |
R4870 |
T7252 |
T7251 |
cc |
and,Xpd†XP |
R4871 |
T7253 |
T7251 |
conj |
Xpd†XPCS,Xpd†XP |
R4872 |
T7254 |
T7250 |
amod |
targeted,alleles |
R4873 |
T7255 |
T7248 |
punct |
", ",indicate |
R4874 |
T7256 |
T7257 |
amod |
vertical,arrows |
R4875 |
T7257 |
T7248 |
nsubj |
arrows,indicate |
R4876 |
T7258 |
T7259 |
nmod |
XPCS,mutations |
R4877 |
T7259 |
T7248 |
dobj |
mutations,indicate |
R4878 |
T7260 |
T7261 |
punct |
(,encoding |
R4879 |
T7261 |
T7258 |
parataxis |
encoding,XPCS |
R4880 |
T7262 |
T7261 |
npadvmod |
G602D,encoding |
R4881 |
T7263 |
T7261 |
punct |
-,encoding |
R4882 |
T7264 |
T7261 |
punct |
),encoding |
R4883 |
T7265 |
T7258 |
cc |
and,XPCS |
R4884 |
T7266 |
T7258 |
conj |
XP,XPCS |
R4885 |
T7267 |
T7268 |
punct |
(,encoding |
R4886 |
T7268 |
T7266 |
parataxis |
encoding,XP |
R4887 |
T7269 |
T7268 |
npadvmod |
R683W,encoding |
R4888 |
T7270 |
T7268 |
punct |
-,encoding |
R4889 |
T7271 |
T7268 |
punct |
),encoding |
R4890 |
T7272 |
T7259 |
prep |
in,mutations |
R4891 |
T7273 |
T7274 |
nmod |
exons,19 |
R4892 |
T7274 |
T7272 |
pobj |
19,in |
R4893 |
T7275 |
T7274 |
cc |
and,19 |
R4894 |
T7276 |
T7274 |
conj |
22,19 |
R4895 |
T7277 |
T7248 |
punct |
", ",indicate |
R4896 |
T7278 |
T7248 |
advmod |
respectively,indicate |
R4897 |
T7279 |
T7248 |
punct |
.,indicate |
R4898 |
T7281 |
T7282 |
det |
The,probe |
R4899 |
T7282 |
T7286 |
nsubjpass |
probe,marked |
R4900 |
T7283 |
T7282 |
amod |
unique,probe |
R4901 |
T7284 |
T7282 |
nummod |
3,probe |
R4902 |
T7285 |
T7284 |
punct |
′,3 |
R4903 |
T7287 |
T7282 |
acl |
located,probe |
R4904 |
T7288 |
T7287 |
prep |
outside,located |
R4905 |
T7289 |
T7290 |
det |
the,construct |
R4906 |
T7290 |
T7288 |
pobj |
construct,outside |
R4907 |
T7291 |
T7290 |
amod |
targeting,construct |
R4908 |
T7292 |
T7286 |
auxpass |
is,marked |
R4909 |
T7293 |
T7286 |
agent |
by,marked |
R4910 |
T7294 |
T7295 |
det |
a,line |
R4911 |
T7295 |
T7293 |
pobj |
line,by |
R4912 |
T7296 |
T7295 |
amod |
thick,line |
R4913 |
T7297 |
T7295 |
amod |
black,line |
R4914 |
T7298 |
T7286 |
punct |
.,marked |
R4915 |
T7300 |
T7301 |
compound |
Restriction,sites |
R4916 |
T7302 |
T7301 |
punct |
: ,sites |
R4917 |
T7303 |
T7301 |
appos |
B,sites |
R4918 |
T7304 |
T7303 |
punct |
", ",B |
R4919 |
T7305 |
T7303 |
appos |
BamHI,B |
R4920 |
T7306 |
T7303 |
punct |
;,B |
R4921 |
T7307 |
T7303 |
appos |
C,B |
R4922 |
T7308 |
T7307 |
punct |
", ",C |
R4923 |
T7309 |
T7307 |
appos |
ClaI,C |
R4924 |
T7310 |
T7303 |
punct |
;,B |
R4925 |
T7311 |
T7303 |
appos |
E,B |
R4926 |
T7312 |
T7311 |
punct |
", ",E |
R4927 |
T7313 |
T7311 |
appos |
EcoRI,E |
R4928 |
T7314 |
T7303 |
punct |
;,B |
R4929 |
T7315 |
T7303 |
appos |
H,B |
R4930 |
T7316 |
T7315 |
punct |
", ",H |
R4931 |
T7317 |
T7315 |
appos |
HindIII,H |
R4932 |
T7318 |
T7303 |
punct |
;,B |
R4933 |
T7319 |
T7303 |
appos |
Hp,B |
R4934 |
T7320 |
T7319 |
punct |
", ",Hp |
R4935 |
T7321 |
T7319 |
appos |
HpaI,Hp |
R4936 |
T7322 |
T7303 |
punct |
;,B |
R4937 |
T7323 |
T7303 |
appos |
Sf,B |
R4938 |
T7324 |
T7323 |
punct |
", ",Sf |
R4939 |
T7325 |
T7323 |
appos |
SfiI,Sf |
R4940 |
T7326 |
T7301 |
punct |
.,sites |
R4941 |
T7328 |
T7329 |
punct |
(,B |
R4942 |
T7329 |
T7330 |
meta |
B,analysis |
R4943 |
T7331 |
T7329 |
punct |
),B |
R4944 |
T7332 |
T7333 |
compound |
Southern,blot |
R4945 |
T7333 |
T7330 |
compound |
blot,analysis |
R4946 |
T7334 |
T7330 |
prep |
of,analysis |
R4947 |
T7335 |
T7336 |
npadvmod |
EcoRI,digested |
R4948 |
T7336 |
T7338 |
amod |
digested,DNA |
R4949 |
T7337 |
T7336 |
punct |
-,digested |
R4950 |
T7338 |
T7334 |
pobj |
DNA,of |
R4951 |
T7339 |
T7338 |
amod |
genomic,DNA |
R4952 |
T7340 |
T7338 |
prep |
from,DNA |
R4953 |
T7341 |
T7342 |
nmod |
wt,clones |
R4954 |
T7342 |
T7340 |
pobj |
clones,from |
R4955 |
T7343 |
T7341 |
punct |
", ",wt |
R4956 |
T7344 |
T7345 |
compound |
Xpd†XPCS,wt |
R4957 |
T7345 |
T7341 |
conj |
wt,wt |
R4958 |
T7346 |
T7345 |
punct |
/,wt |
R4959 |
T7347 |
T7345 |
punct |
", ",wt |
R4960 |
T7348 |
T7345 |
cc |
and,wt |
R4961 |
T7349 |
T7350 |
compound |
Xpd†XP,wt |
R4962 |
T7350 |
T7345 |
conj |
wt,wt |
R4963 |
T7351 |
T7350 |
punct |
/,wt |
R4964 |
T7352 |
T7342 |
amod |
recombinant,clones |
R4965 |
T7353 |
T7354 |
amod |
embryonic,cell |
R4966 |
T7354 |
T7342 |
compound |
cell,clones |
R4967 |
T7355 |
T7354 |
compound |
stem,cell |
R4968 |
T7356 |
T7342 |
acl |
hybridised,clones |
R4969 |
T7357 |
T7356 |
prep |
with,hybridised |
R4970 |
T7358 |
T7359 |
det |
the,probe |
R4971 |
T7359 |
T7357 |
pobj |
probe,with |
R4972 |
T7360 |
T7359 |
nummod |
3,probe |
R4973 |
T7361 |
T7360 |
punct |
′,3 |
R4974 |
T7362 |
T7359 |
acl |
depicted,probe |
R4975 |
T7363 |
T7362 |
prep |
in,depicted |
R4976 |
T7364 |
T7363 |
punct |
(,in |
R4977 |
T7365 |
T7363 |
pobj |
A,in |
R4978 |
T7366 |
T7330 |
punct |
),analysis |
R4979 |
T7367 |
T7330 |
punct |
.,analysis |
R4980 |
T7369 |
T7370 |
det |
The,allele |
R4981 |
T7370 |
T7372 |
nsubj |
allele,yields |
R4982 |
T7371 |
T7370 |
compound |
wt,allele |
R4983 |
T7373 |
T7374 |
det |
a,fragment |
R4984 |
T7374 |
T7372 |
dobj |
fragment,yields |
R4985 |
T7375 |
T7376 |
nummod |
6.5,kilobase |
R4986 |
T7376 |
T7374 |
nmod |
kilobase,fragment |
R4987 |
T7377 |
T7376 |
punct |
-,kilobase |
R4988 |
T7378 |
T7376 |
punct |
(,kilobase |
R4989 |
T7379 |
T7376 |
appos |
kb,kilobase |
R4990 |
T7380 |
T7374 |
punct |
),fragment |
R4991 |
T7381 |
T7372 |
punct |
", ",yields |
R4992 |
T7382 |
T7383 |
mark |
whereas,yield |
R4993 |
T7383 |
T7372 |
advcl |
yield,yields |
R4994 |
T7384 |
T7385 |
preconj |
both,alleles |
R4995 |
T7385 |
T7383 |
nsubj |
alleles,yield |
R4996 |
T7386 |
T7385 |
amod |
targeted,alleles |
R4997 |
T7387 |
T7385 |
nmod |
Xpd†XP,alleles |
R4998 |
T7388 |
T7387 |
cc |
and,Xpd†XP |
R4999 |
T7389 |
T7387 |
conj |
Xpd†XPCS,Xpd†XP |
R5000 |
T7390 |
T7391 |
det |
a,fragment |
R5001 |
T7391 |
T7383 |
dobj |
fragment,yield |
R5002 |
T7392 |
T7393 |
nummod |
5.1,kb |
R5003 |
T7393 |
T7391 |
compound |
kb,fragment |
R5004 |
T7394 |
T7393 |
punct |
-,kb |
R5005 |
T7395 |
T7372 |
punct |
.,yields |
R5006 |
T7397 |
T7398 |
punct |
(,C |
R5007 |
T7398 |
T7399 |
meta |
C,Genotyping |
R5008 |
T7400 |
T7398 |
punct |
),C |
R5009 |
T7401 |
T7399 |
prep |
of,Genotyping |
R5010 |
T7402 |
T7403 |
nmod |
wt,alleles |
R5011 |
T7403 |
T7401 |
pobj |
alleles,of |
R5012 |
T7404 |
T7402 |
cc |
and,wt |
R5013 |
T7405 |
T7402 |
conj |
targeted,wt |
R5014 |
T7406 |
T7399 |
prep |
by,Genotyping |
R5015 |
T7407 |
T7406 |
pobj |
PCR,by |
R5016 |
T7408 |
T7399 |
acl |
using,Genotyping |
R5017 |
T7409 |
T7408 |
dobj |
primers,using |
R5018 |
T7410 |
T7409 |
appos |
F2,primers |
R5019 |
T7411 |
T7410 |
punct |
", ",F2 |
R5020 |
T7412 |
T7410 |
conj |
R1,F2 |
R5021 |
T7413 |
T7412 |
punct |
", ",R1 |
R5022 |
T7414 |
T7412 |
cc |
and,R1 |
R5023 |
T7415 |
T7412 |
conj |
mR,R1 |
R5024 |
T7416 |
T7417 |
mark |
as,indicated |
R5025 |
T7417 |
T7408 |
advcl |
indicated,using |
R5026 |
T7418 |
T7408 |
prep |
in,using |
R5027 |
T7419 |
T7420 |
punct |
(,A |
R5028 |
T7420 |
T7421 |
meta |
A,fragments |
R5029 |
T7421 |
T7418 |
pobj |
fragments,in |
R5030 |
T7422 |
T7420 |
punct |
),A |
R5031 |
T7423 |
T7421 |
nmod |
yields,fragments |
R5032 |
T7424 |
T7421 |
prep |
of,fragments |
R5033 |
T7425 |
T7426 |
nummod |
399,bp |
R5034 |
T7426 |
T7424 |
pobj |
bp,of |
R5035 |
T7427 |
T7426 |
cc |
and,bp |
R5036 |
T7428 |
T7429 |
nummod |
468,bp |
R5037 |
T7429 |
T7426 |
conj |
bp,bp |
R5038 |
T7430 |
T7408 |
punct |
", ",using |
R5039 |
T7431 |
T7408 |
advmod |
respectively,using |
R5040 |
T7432 |
T7399 |
punct |
.,Genotyping |
R5041 |
T7434 |
T7435 |
punct |
(,D |
R5042 |
T7435 |
T7436 |
meta |
D,results |
R5043 |
T7437 |
T7435 |
punct |
),D |
R5044 |
T7438 |
T7439 |
compound |
RT,PCR |
R5045 |
T7439 |
T7441 |
compound |
PCR,detection |
R5046 |
T7440 |
T7439 |
punct |
-,PCR |
R5047 |
T7441 |
T7436 |
nsubj |
detection,results |
R5048 |
T7442 |
T7441 |
prep |
of,detection |
R5049 |
T7443 |
T7444 |
compound |
mRNA,expression |
R5050 |
T7444 |
T7442 |
pobj |
expression,of |
R5051 |
T7445 |
T7444 |
acl |
originating,expression |
R5052 |
T7446 |
T7445 |
prep |
from,originating |
R5053 |
T7447 |
T7448 |
det |
the,alleles |
R5054 |
T7448 |
T7446 |
pobj |
alleles,from |
R5055 |
T7449 |
T7448 |
amod |
targeted,alleles |
R5056 |
T7450 |
T7448 |
nmod |
†XP,alleles |
R5057 |
T7451 |
T7450 |
cc |
and,†XP |
R5058 |
T7452 |
T7450 |
conj |
†XPCS,†XP |
R5059 |
T7453 |
T7441 |
prep |
in,detection |
R5060 |
T7454 |
T7455 |
amod |
embryonic,cell |
R5061 |
T7455 |
T7457 |
compound |
cell,clones |
R5062 |
T7456 |
T7455 |
compound |
stem,cell |
R5063 |
T7457 |
T7453 |
pobj |
clones,in |
R5064 |
T7458 |
T7441 |
acl |
using,detection |
R5065 |
T7459 |
T7458 |
dobj |
primers,using |
R5066 |
T7460 |
T7459 |
appos |
F1,primers |
R5067 |
T7461 |
T7462 |
punct |
(,hybridising |
R5068 |
T7462 |
T7460 |
parataxis |
hybridising,F1 |
R5069 |
T7463 |
T7462 |
prep |
outside,hybridising |
R5070 |
T7464 |
T7465 |
det |
the,construct |
R5071 |
T7465 |
T7463 |
pobj |
construct,outside |
R5072 |
T7466 |
T7465 |
amod |
targeting,construct |
R5073 |
T7467 |
T7462 |
punct |
),hybridising |
R5074 |
T7468 |
T7460 |
cc |
and,F1 |
R5075 |
T7469 |
T7460 |
conj |
mR,F1 |
R5076 |
T7470 |
T7471 |
mark |
as,indicated |
R5077 |
T7471 |
T7458 |
advcl |
indicated,using |
R5078 |
T7472 |
T7471 |
prep |
in,indicated |
R5079 |
T7473 |
T7472 |
punct |
(,in |
R5080 |
T7474 |
T7472 |
pobj |
A,in |
R5081 |
T7475 |
T7436 |
punct |
),results |
R5082 |
T7476 |
T7436 |
prep |
in,results |
R5083 |
T7477 |
T7478 |
det |
a,fragment |
R5084 |
T7478 |
T7476 |
pobj |
fragment,in |
R5085 |
T7479 |
T7480 |
nummod |
"1,416",bp |
R5086 |
T7480 |
T7478 |
compound |
bp,fragment |
R5087 |
T7481 |
T7480 |
punct |
-,bp |
R5088 |
T7482 |
T7436 |
punct |
.,results |
R5089 |
T7484 |
T7485 |
punct |
(,E |
R5090 |
T7485 |
T7486 |
meta |
E,analysis |
R5091 |
T7487 |
T7485 |
punct |
),E |
R5092 |
T7488 |
T7489 |
compound |
Northern,blot |
R5093 |
T7489 |
T7486 |
compound |
blot,analysis |
R5094 |
T7490 |
T7486 |
prep |
of,analysis |
R5095 |
T7491 |
T7492 |
amod |
total,RNA |
R5096 |
T7492 |
T7490 |
pobj |
RNA,of |
R5097 |
T7493 |
T7492 |
acl |
isolated,RNA |
R5098 |
T7494 |
T7493 |
prep |
from,isolated |
R5099 |
T7495 |
T7494 |
pobj |
testis,from |
R5100 |
T7496 |
T7495 |
prep |
of,testis |
R5101 |
T7497 |
T7498 |
amod |
homozygous,wt |
R5102 |
T7498 |
T7499 |
nmod |
wt,mice |
R5103 |
T7499 |
T7496 |
pobj |
mice,of |
R5104 |
T7500 |
T7498 |
cc |
and,wt |
R5105 |
T7501 |
T7502 |
compound |
XpdTTD,TTD |
R5106 |
T7502 |
T7498 |
conj |
TTD,wt |
R5107 |
T7503 |
T7502 |
punct |
/,TTD |
R5108 |
T7504 |
T7498 |
punct |
", ",wt |
R5109 |
T7505 |
T7506 |
amod |
heterozygous,wt |
R5110 |
T7506 |
T7498 |
conj |
wt,wt |
R5111 |
T7507 |
T7506 |
compound |
Xpd†XPCS,wt |
R5112 |
T7508 |
T7506 |
punct |
/,wt |
R5113 |
T7509 |
T7506 |
cc |
and,wt |
R5114 |
T7510 |
T7511 |
compound |
XpdTTD,wt |
R5115 |
T7511 |
T7506 |
conj |
wt,wt |
R5116 |
T7512 |
T7511 |
punct |
/,wt |
R5117 |
T7513 |
T7506 |
punct |
", ",wt |
R5118 |
T7514 |
T7506 |
cc |
and,wt |
R5119 |
T7515 |
T7516 |
amod |
compound,TTD |
R5120 |
T7516 |
T7506 |
conj |
TTD,wt |
R5121 |
T7517 |
T7516 |
amod |
heterozygous,TTD |
R5122 |
T7518 |
T7516 |
compound |
Xpd†XPCS,TTD |
R5123 |
T7519 |
T7516 |
punct |
/,TTD |
R5124 |
T7520 |
T7521 |
mark |
as,indicated |
R5125 |
T7521 |
T7493 |
advcl |
indicated,isolated |
R5126 |
T7522 |
T7486 |
punct |
.,analysis |
R5127 |
T7524 |
T7525 |
nsubj |
Hybridisation,detects |
R5128 |
T7526 |
T7524 |
prep |
with,Hybridisation |
R5129 |
T7527 |
T7528 |
det |
a,probe |
R5130 |
T7528 |
T7526 |
pobj |
probe,with |
R5131 |
T7529 |
T7530 |
nummod |
1.4,kb |
R5132 |
T7530 |
T7528 |
compound |
kb,probe |
R5133 |
T7531 |
T7530 |
punct |
-,kb |
R5134 |
T7532 |
T7528 |
compound |
mouse,probe |
R5135 |
T7533 |
T7528 |
compound |
Xpd,probe |
R5136 |
T7534 |
T7528 |
compound |
cDNA,probe |
R5137 |
T7535 |
T7525 |
dobj |
mRNAs,detects |
R5138 |
T7536 |
T7535 |
prep |
of,mRNAs |
R5139 |
T7537 |
T7538 |
nummod |
4,kb |
R5140 |
T7538 |
T7536 |
pobj |
kb,of |
R5141 |
T7539 |
T7537 |
punct |
", ",4 |
R5142 |
T7540 |
T7537 |
conj |
3.3,4 |
R5143 |
T7541 |
T7540 |
punct |
", ",3.3 |
R5144 |
T7542 |
T7540 |
cc |
and,3.3 |
R5145 |
T7543 |
T7540 |
conj |
2.7,3.3 |
R5146 |
T7544 |
T7535 |
prep |
from,mRNAs |
R5147 |
T7545 |
T7546 |
nmod |
wt,alleles |
R5148 |
T7546 |
T7544 |
pobj |
alleles,from |
R5149 |
T7547 |
T7545 |
punct |
", ",wt |
R5150 |
T7548 |
T7545 |
conj |
Xpd†XPCS,wt |
R5151 |
T7549 |
T7548 |
punct |
", ",Xpd†XPCS |
R5152 |
T7550 |
T7548 |
cc |
and,Xpd†XPCS |
R5153 |
T7551 |
T7548 |
conj |
XpdTTD,Xpd†XPCS |
R5154 |
T7552 |
T7535 |
punct |
", ",mRNAs |
R5155 |
T7553 |
T7535 |
advmod |
respectively,mRNAs |
R5156 |
T7554 |
T7525 |
punct |
.,detects |
R5157 |
T7556 |
T7557 |
det |
An,gel |
R5158 |
T7557 |
T7565 |
nsubjpass |
gel,shown |
R5159 |
T7558 |
T7559 |
compound |
ethidium,bromide |
R5160 |
T7559 |
T7560 |
npadvmod |
bromide,stained |
R5161 |
T7560 |
T7557 |
amod |
stained,gel |
R5162 |
T7561 |
T7559 |
punct |
(,bromide |
R5163 |
T7562 |
T7559 |
appos |
EtBr,bromide |
R5164 |
T7563 |
T7560 |
punct |
),stained |
R5165 |
T7564 |
T7560 |
punct |
–,stained |
R5166 |
T7566 |
T7557 |
acl |
showing,gel |
R5167 |
T7567 |
T7568 |
det |
the,amount |
R5168 |
T7568 |
T7566 |
dobj |
amount,showing |
R5169 |
T7569 |
T7568 |
prep |
of,amount |
R5170 |
T7570 |
T7571 |
amod |
total,RNA |
R5171 |
T7571 |
T7569 |
pobj |
RNA,of |
R5172 |
T7572 |
T7571 |
acl |
loaded,RNA |
R5173 |
T7573 |
T7565 |
auxpass |
is,shown |
R5174 |
T7574 |
T7565 |
advmod |
below,shown |
R5175 |
T7575 |
T7565 |
punct |
.,shown |
R5176 |
T7658 |
T7659 |
amod |
Partial,Rescue |
R5177 |
T7660 |
T7659 |
prep |
of,Rescue |
R5178 |
T7661 |
T7660 |
pobj |
TTD,of |
R5179 |
T7662 |
T7661 |
amod |
Cutaneous,TTD |
R5180 |
T7663 |
T7661 |
punct |
", ",TTD |
R5181 |
T7664 |
T7661 |
conj |
Blood,TTD |
R5182 |
T7665 |
T7664 |
punct |
", ",Blood |
R5183 |
T7666 |
T7664 |
cc |
and,Blood |
R5184 |
T7667 |
T7668 |
amod |
Developmental,Phenotypes |
R5185 |
T7668 |
T7664 |
conj |
Phenotypes,Blood |
R5186 |
T7669 |
T7659 |
prep |
in,Rescue |
R5187 |
T7670 |
T7671 |
nmod |
Compound,Mice |
R5188 |
T7671 |
T7669 |
pobj |
Mice,in |
R5189 |
T7672 |
T7671 |
amod |
Heterozygous,Mice |
R5190 |
T7673 |
T7674 |
compound |
XpdTTD,†XPCS |
R5191 |
T7674 |
T7671 |
compound |
†XPCS,Mice |
R5192 |
T7675 |
T7674 |
punct |
/,†XPCS |
R5193 |
T7677 |
T7678 |
punct |
(,A |
R5194 |
T7678 |
T7679 |
meta |
A,Photographs |
R5195 |
T7680 |
T7678 |
punct |
),A |
R5196 |
T7681 |
T7679 |
prep |
of,Photographs |
R5197 |
T7682 |
T7683 |
nummod |
5,mo |
R5198 |
T7683 |
T7685 |
npadvmod |
mo,old |
R5199 |
T7684 |
T7683 |
punct |
-,mo |
R5200 |
T7685 |
T7687 |
amod |
old,mice |
R5201 |
T7686 |
T7685 |
punct |
-,old |
R5202 |
T7687 |
T7681 |
pobj |
mice,of |
R5203 |
T7688 |
T7689 |
amod |
homozygous,TTD |
R5204 |
T7689 |
T7687 |
nmod |
TTD,mice |
R5205 |
T7690 |
T7689 |
nmod |
XpdTTD,TTD |
R5206 |
T7691 |
T7689 |
punct |
/,TTD |
R5207 |
T7692 |
T7689 |
punct |
", ",TTD |
R5208 |
T7693 |
T7694 |
nmod |
compound,†XPCS |
R5209 |
T7694 |
T7689 |
conj |
†XPCS,TTD |
R5210 |
T7695 |
T7694 |
amod |
heterozygous,†XPCS |
R5211 |
T7696 |
T7694 |
compound |
XpdTTD,†XPCS |
R5212 |
T7697 |
T7694 |
punct |
/,†XPCS |
R5213 |
T7698 |
T7694 |
punct |
", ",†XPCS |
R5214 |
T7699 |
T7694 |
cc |
and,†XPCS |
R5215 |
T7700 |
T7694 |
conj |
wt,†XPCS |
R5216 |
T7701 |
T7679 |
punct |
.,Photographs |
R5217 |
T7704 |
T7703 |
punct |
: ,Insets |
R5218 |
T7705 |
T7703 |
appos |
images,Insets |
R5219 |
T7706 |
T7705 |
prep |
of,images |
R5220 |
T7707 |
T7708 |
amod |
first,round |
R5221 |
T7708 |
T7710 |
compound |
round,loss |
R5222 |
T7709 |
T7708 |
punct |
-,round |
R5223 |
T7710 |
T7706 |
pobj |
loss,of |
R5224 |
T7711 |
T7710 |
compound |
hair,loss |
R5225 |
T7712 |
T7703 |
punct |
.,Insets |
R5226 |
T7714 |
T7715 |
punct |
(,B |
R5227 |
T7715 |
T7716 |
meta |
B,analysis |
R5228 |
T7717 |
T7715 |
punct |
),B |
R5229 |
T7718 |
T7716 |
amod |
Histological,analysis |
R5230 |
T7719 |
T7716 |
prep |
of,analysis |
R5231 |
T7720 |
T7721 |
det |
the,skin |
R5232 |
T7721 |
T7719 |
pobj |
skin,of |
R5233 |
T7722 |
T7721 |
prep |
of,skin |
R5234 |
T7723 |
T7724 |
nmod |
XpdTTD,TTD |
R5235 |
T7724 |
T7726 |
nmod |
TTD,mice |
R5236 |
T7725 |
T7724 |
punct |
/,TTD |
R5237 |
T7726 |
T7722 |
pobj |
mice,of |
R5238 |
T7727 |
T7724 |
punct |
", ",TTD |
R5239 |
T7728 |
T7729 |
compound |
XpdTTD,†XPCS |
R5240 |
T7729 |
T7724 |
conj |
†XPCS,TTD |
R5241 |
T7730 |
T7729 |
punct |
/,†XPCS |
R5242 |
T7731 |
T7729 |
punct |
", ",†XPCS |
R5243 |
T7732 |
T7729 |
cc |
and,†XPCS |
R5244 |
T7733 |
T7729 |
conj |
wt,†XPCS |
R5245 |
T7734 |
T7716 |
punct |
.,analysis |
R5246 |
T7736 |
T7737 |
npadvmod |
TTD,associated |
R5247 |
T7737 |
T7739 |
amod |
associated,acanthosis |
R5248 |
T7738 |
T7737 |
punct |
-,associated |
R5249 |
T7739 |
T7740 |
nsubj |
acanthosis,were |
R5250 |
T7741 |
T7742 |
punct |
(,epidermis |
R5251 |
T7742 |
T7739 |
parataxis |
epidermis,acanthosis |
R5252 |
T7743 |
T7742 |
amod |
thicker,epidermis |
R5253 |
T7744 |
T7742 |
punct |
", ",epidermis |
R5254 |
T7745 |
T7742 |
acl |
indicated,epidermis |
R5255 |
T7746 |
T7745 |
agent |
by,indicated |
R5256 |
T7747 |
T7748 |
amod |
solid,line |
R5257 |
T7748 |
T7746 |
pobj |
line,by |
R5258 |
T7749 |
T7748 |
amod |
vertical,line |
R5259 |
T7750 |
T7742 |
punct |
),epidermis |
R5260 |
T7751 |
T7739 |
punct |
", ",acanthosis |
R5261 |
T7752 |
T7753 |
amod |
pronounced,layer |
R5262 |
T7753 |
T7739 |
conj |
layer,acanthosis |
R5263 |
T7754 |
T7753 |
amod |
granular,layer |
R5264 |
T7755 |
T7753 |
punct |
(,layer |
R5265 |
T7756 |
T7753 |
acl |
indicated,layer |
R5266 |
T7757 |
T7756 |
agent |
by,indicated |
R5267 |
T7758 |
T7757 |
pobj |
arrows,by |
R5268 |
T7759 |
T7753 |
punct |
),layer |
R5269 |
T7760 |
T7753 |
punct |
", ",layer |
R5270 |
T7761 |
T7753 |
cc |
and,layer |
R5271 |
T7762 |
T7763 |
amod |
sebacious,hyperplasia |
R5272 |
T7763 |
T7753 |
conj |
hyperplasia,layer |
R5273 |
T7764 |
T7763 |
compound |
gland,hyperplasia |
R5274 |
T7765 |
T7763 |
punct |
(,hyperplasia |
R5275 |
T7766 |
T7763 |
acl |
indicated,hyperplasia |
R5276 |
T7767 |
T7766 |
agent |
by,indicated |
R5277 |
T7768 |
T7769 |
amod |
dotted,line |
R5278 |
T7769 |
T7767 |
pobj |
line,by |
R5279 |
T7770 |
T7769 |
amod |
vertical,line |
R5280 |
T7771 |
T7740 |
punct |
),were |
R5281 |
T7772 |
T7740 |
acomp |
absent,were |
R5282 |
T7773 |
T7740 |
prep |
in,were |
R5283 |
T7774 |
T7775 |
det |
the,epidermis |
R5284 |
T7775 |
T7773 |
pobj |
epidermis,in |
R5285 |
T7776 |
T7775 |
prep |
of,epidermis |
R5286 |
T7777 |
T7778 |
nmod |
XpdTTD,†XPCS |
R5287 |
T7778 |
T7780 |
nmod |
†XPCS,mice |
R5288 |
T7779 |
T7778 |
punct |
/,†XPCS |
R5289 |
T7780 |
T7776 |
pobj |
mice,of |
R5290 |
T7781 |
T7778 |
cc |
and,†XPCS |
R5291 |
T7782 |
T7778 |
conj |
wt,†XPCS |
R5292 |
T7783 |
T7740 |
punct |
.,were |
R5293 |
T7786 |
T7785 |
appos |
400,Magnification |
R5294 |
T7787 |
T7786 |
punct |
×,400 |
R5295 |
T7788 |
T7785 |
punct |
.,Magnification |
R5296 |
T7790 |
T7791 |
punct |
(,C |
R5297 |
T7791 |
T7792 |
meta |
C,content |
R5298 |
T7793 |
T7791 |
punct |
),C |
R5299 |
T7794 |
T7792 |
compound |
Cysteine,content |
R5300 |
T7795 |
T7792 |
prep |
of,content |
R5301 |
T7796 |
T7795 |
pobj |
hair,of |
R5302 |
T7797 |
T7796 |
prep |
from,hair |
R5303 |
T7798 |
T7799 |
nmod |
wt,mice |
R5304 |
T7799 |
T7797 |
pobj |
mice,from |
R5305 |
T7800 |
T7798 |
punct |
", ",wt |
R5306 |
T7801 |
T7802 |
compound |
XpdTTD,TTD |
R5307 |
T7802 |
T7798 |
conj |
TTD,wt |
R5308 |
T7803 |
T7802 |
punct |
/,TTD |
R5309 |
T7804 |
T7802 |
punct |
", ",TTD |
R5310 |
T7805 |
T7802 |
cc |
and,TTD |
R5311 |
T7806 |
T7807 |
compound |
XpdTTD,†XPCS |
R5312 |
T7807 |
T7802 |
conj |
†XPCS,TTD |
R5313 |
T7808 |
T7807 |
punct |
/,†XPCS |
R5314 |
T7809 |
T7792 |
punct |
.,content |
R5315 |
T7811 |
T7812 |
det |
The,value |
R5316 |
T7812 |
T7815 |
nsubj |
value,indicates |
R5317 |
T7813 |
T7812 |
compound |
p,value |
R5318 |
T7814 |
T7812 |
punct |
-,value |
R5319 |
T7816 |
T7817 |
amod |
significant,differences |
R5320 |
T7817 |
T7815 |
dobj |
differences,indicates |
R5321 |
T7818 |
T7817 |
prep |
between,differences |
R5322 |
T7819 |
T7818 |
pobj |
mutants,between |
R5323 |
T7820 |
T7819 |
cc |
and,mutants |
R5324 |
T7821 |
T7819 |
conj |
wt,mutants |
R5325 |
T7822 |
T7818 |
punct |
", ",between |
R5326 |
T7823 |
T7824 |
advmod |
as,as |
R5327 |
T7824 |
T7818 |
cc |
as,between |
R5328 |
T7825 |
T7824 |
advmod |
well,as |
R5329 |
T7826 |
T7818 |
conj |
between,between |
R5330 |
T7827 |
T7828 |
nmod |
XpdTTD,TTD |
R5331 |
T7828 |
T7830 |
nmod |
TTD,mice |
R5332 |
T7829 |
T7828 |
punct |
/,TTD |
R5333 |
T7830 |
T7826 |
pobj |
mice,between |
R5334 |
T7831 |
T7828 |
cc |
and,TTD |
R5335 |
T7832 |
T7833 |
compound |
XpdTTD,†XPCS |
R5336 |
T7833 |
T7828 |
conj |
†XPCS,TTD |
R5337 |
T7834 |
T7833 |
punct |
/,†XPCS |
R5338 |
T7835 |
T7815 |
punct |
.,indicates |
R5339 |
T7837 |
T7838 |
compound |
Error,bars |
R5340 |
T7838 |
T7839 |
nsubj |
bars,indicate |
R5341 |
T7840 |
T7841 |
amod |
standard,error |
R5342 |
T7841 |
T7839 |
dobj |
error,indicate |
R5343 |
T7842 |
T7841 |
prep |
of,error |
R5344 |
T7843 |
T7844 |
det |
the,mean |
R5345 |
T7844 |
T7842 |
pobj |
mean,of |
R5346 |
T7845 |
T7841 |
punct |
(,error |
R5347 |
T7846 |
T7841 |
appos |
SEM,error |
R5348 |
T7847 |
T7839 |
punct |
),indicate |
R5349 |
T7848 |
T7839 |
punct |
.,indicate |
R5350 |
T7850 |
T7851 |
punct |
(,D |
R5351 |
T7851 |
T7852 |
meta |
D,values |
R5352 |
T7853 |
T7851 |
punct |
),D |
R5353 |
T7854 |
T7852 |
compound |
Hematocrit,values |
R5354 |
T7855 |
T7852 |
prep |
from,values |
R5355 |
T7856 |
T7855 |
pobj |
blood,from |
R5356 |
T7857 |
T7856 |
prep |
of,blood |
R5357 |
T7858 |
T7859 |
nmod |
XpdTTD,TTD |
R5358 |
T7859 |
T7861 |
nmod |
TTD,mice |
R5359 |
T7860 |
T7859 |
punct |
/,TTD |
R5360 |
T7861 |
T7857 |
pobj |
mice,of |
R5361 |
T7862 |
T7859 |
cc |
and,TTD |
R5362 |
T7863 |
T7864 |
compound |
XpdTTD,†XPCS |
R5363 |
T7864 |
T7859 |
conj |
†XPCS,TTD |
R5364 |
T7865 |
T7864 |
punct |
/,†XPCS |
R5365 |
T7866 |
T7852 |
punct |
.,values |
R5366 |
T7868 |
T7869 |
det |
The,values |
R5367 |
T7869 |
T7872 |
nsubj |
values,indicate |
R5368 |
T7870 |
T7869 |
compound |
p,values |
R5369 |
T7871 |
T7869 |
punct |
-,values |
R5370 |
T7873 |
T7874 |
det |
the,significance |
R5371 |
T7874 |
T7872 |
dobj |
significance,indicate |
R5372 |
T7875 |
T7874 |
prep |
of,significance |
R5373 |
T7876 |
T7877 |
det |
the,difference |
R5374 |
T7877 |
T7875 |
pobj |
difference,of |
R5375 |
T7878 |
T7872 |
advcl |
relative,indicate |
R5376 |
T7879 |
T7878 |
prep |
to,relative |
R5377 |
T7880 |
T7879 |
pobj |
wt,to |
R5378 |
T7881 |
T7872 |
punct |
.,indicate |
R5379 |
T7883 |
T7884 |
compound |
Error,bars |
R5380 |
T7884 |
T7885 |
nsubj |
bars,indicate |
R5381 |
T7886 |
T7885 |
dobj |
SEM,indicate |
R5382 |
T7887 |
T7885 |
punct |
.,indicate |
R5383 |
T7889 |
T7890 |
punct |
(,E |
R5384 |
T7890 |
T7891 |
meta |
E,weights |
R5385 |
T7892 |
T7890 |
punct |
),E |
R5386 |
T7893 |
T7891 |
compound |
Body,weights |
R5387 |
T7894 |
T7891 |
prep |
of,weights |
R5388 |
T7895 |
T7896 |
amod |
developing,mice |
R5389 |
T7896 |
T7894 |
pobj |
mice,of |
R5390 |
T7897 |
T7898 |
nmod |
XpdTTD,TTD |
R5391 |
T7898 |
T7896 |
nmod |
TTD,mice |
R5392 |
T7899 |
T7898 |
punct |
/,TTD |
R5393 |
T7900 |
T7898 |
cc |
and,TTD |
R5394 |
T7901 |
T7902 |
compound |
XpdTTD,†XPCS |
R5395 |
T7902 |
T7898 |
conj |
†XPCS,TTD |
R5396 |
T7903 |
T7902 |
punct |
/,†XPCS |
R5397 |
T7904 |
T7896 |
prep |
after,mice |
R5398 |
T7905 |
T7904 |
pobj |
weaning,after |
R5399 |
T7906 |
T7891 |
acl |
plotted,weights |
R5400 |
T7907 |
T7906 |
prep |
as,plotted |
R5401 |
T7908 |
T7909 |
det |
a,percentage |
R5402 |
T7909 |
T7907 |
pobj |
percentage,as |
R5403 |
T7910 |
T7909 |
prep |
of,percentage |
R5404 |
T7911 |
T7912 |
det |
the,weight |
R5405 |
T7912 |
T7910 |
pobj |
weight,of |
R5406 |
T7913 |
T7912 |
prep |
of,weight |
R5407 |
T7914 |
T7915 |
npadvmod |
age,matched |
R5408 |
T7915 |
T7917 |
amod |
matched,littermates |
R5409 |
T7916 |
T7915 |
punct |
-,matched |
R5410 |
T7917 |
T7913 |
pobj |
littermates,of |
R5411 |
T7918 |
T7917 |
nmod |
control,littermates |
R5412 |
T7919 |
T7917 |
nmod |
wt,littermates |
R5413 |
T7920 |
T7919 |
cc |
and,wt |
R5414 |
T7921 |
T7919 |
conj |
heterozygote,wt |
R5415 |
T7922 |
T7923 |
punct |
(,hz |
R5416 |
T7923 |
T7921 |
parataxis |
hz,heterozygote |
R5417 |
T7924 |
T7923 |
punct |
),hz |
R5418 |
T7925 |
T7926 |
punct |
(,set |
R5419 |
T7926 |
T7909 |
parataxis |
set,percentage |
R5420 |
T7927 |
T7926 |
prep |
at,set |
R5421 |
T7928 |
T7929 |
nummod |
100,% |
R5422 |
T7929 |
T7927 |
pobj |
%,at |
R5423 |
T7930 |
T7926 |
punct |
),set |
R5424 |
T7931 |
T7891 |
punct |
.,weights |
R5425 |
T7933 |
T7934 |
compound |
Error,bars |
R5426 |
T7934 |
T7935 |
nsubj |
bars,indicate |
R5427 |
T7936 |
T7935 |
dobj |
SEM,indicate |
R5428 |
T7937 |
T7935 |
punct |
.,indicate |
R5429 |
T8042 |
T8041 |
prep |
of,Rescue |
R5430 |
T8043 |
T8044 |
npadvmod |
TTD,Associated |
R5431 |
T8044 |
T8046 |
amod |
Associated,Features |
R5432 |
T8045 |
T8044 |
punct |
-,Associated |
R5433 |
T8046 |
T8042 |
pobj |
Features,of |
R5434 |
T8047 |
T8046 |
amod |
Segmental,Features |
R5435 |
T8048 |
T8046 |
amod |
Progeroid,Features |
R5436 |
T8049 |
T8046 |
prep |
in,Features |
R5437 |
T8050 |
T8051 |
amod |
Compound,Mice |
R5438 |
T8051 |
T8049 |
pobj |
Mice,in |
R5439 |
T8052 |
T8051 |
amod |
Heterozygous,Mice |
R5440 |
T8053 |
T8054 |
compound |
Xpd TTD,†XPCS |
R5441 |
T8054 |
T8051 |
compound |
†XPCS,Mice |
R5442 |
T8055 |
T8054 |
punct |
/,†XPCS |
R5443 |
T8057 |
T8058 |
punct |
(,A |
R5444 |
T8058 |
T8059 |
meta |
A,Photographs |
R5445 |
T8060 |
T8058 |
punct |
),A |
R5446 |
T8061 |
T8059 |
prep |
of,Photographs |
R5447 |
T8062 |
T8063 |
nummod |
20,mo |
R5448 |
T8063 |
T8065 |
npadvmod |
mo,old |
R5449 |
T8064 |
T8063 |
punct |
-,mo |
R5450 |
T8065 |
T8067 |
amod |
old,mice |
R5451 |
T8066 |
T8065 |
punct |
-,old |
R5452 |
T8067 |
T8061 |
pobj |
mice,of |
R5453 |
T8068 |
T8067 |
nmod |
wt,mice |
R5454 |
T8069 |
T8068 |
punct |
", ",wt |
R5455 |
T8070 |
T8071 |
amod |
compound,†XPCS |
R5456 |
T8071 |
T8068 |
conj |
†XPCS,wt |
R5457 |
T8072 |
T8071 |
amod |
heterozygous,†XPCS |
R5458 |
T8073 |
T8071 |
compound |
XpdTTD,†XPCS |
R5459 |
T8074 |
T8071 |
punct |
/,†XPCS |
R5460 |
T8075 |
T8071 |
punct |
", ",†XPCS |
R5461 |
T8076 |
T8071 |
cc |
and,†XPCS |
R5462 |
T8077 |
T8078 |
amod |
homozygous,TTD |
R5463 |
T8078 |
T8071 |
conj |
TTD,†XPCS |
R5464 |
T8079 |
T8078 |
compound |
XpdTTD,TTD |
R5465 |
T8080 |
T8078 |
punct |
/,TTD |
R5466 |
T8081 |
T8059 |
punct |
.,Photographs |
R5467 |
T8084 |
T8085 |
det |
the,cachexia |
R5468 |
T8085 |
T8083 |
dobj |
cachexia,Note |
R5469 |
T8086 |
T8085 |
amod |
extreme,cachexia |
R5470 |
T8087 |
T8085 |
punct |
(,cachexia |
R5471 |
T8088 |
T8085 |
appos |
lack,cachexia |
R5472 |
T8089 |
T8088 |
prep |
of,lack |
R5473 |
T8090 |
T8091 |
amod |
subcutaneous,fat |
R5474 |
T8091 |
T8089 |
pobj |
fat,of |
R5475 |
T8092 |
T8085 |
punct |
),cachexia |
R5476 |
T8093 |
T8085 |
prep |
in,cachexia |
R5477 |
T8094 |
T8095 |
det |
the,mouse |
R5478 |
T8095 |
T8093 |
pobj |
mouse,in |
R5479 |
T8096 |
T8097 |
compound |
XpdTTD,TTD |
R5480 |
T8097 |
T8095 |
compound |
TTD,mouse |
R5481 |
T8098 |
T8097 |
punct |
/,TTD |
R5482 |
T8099 |
T8083 |
cc |
and,Note |
R5483 |
T8100 |
T8101 |
det |
the,absence |
R5484 |
T8101 |
T8083 |
conj |
absence,Note |
R5485 |
T8102 |
T8101 |
prep |
of,absence |
R5486 |
T8103 |
T8104 |
det |
this,phenotype |
R5487 |
T8104 |
T8102 |
pobj |
phenotype,of |
R5488 |
T8105 |
T8101 |
prep |
in,absence |
R5489 |
T8106 |
T8107 |
nmod |
wt,mice |
R5490 |
T8107 |
T8105 |
pobj |
mice,in |
R5491 |
T8108 |
T8106 |
cc |
and,wt |
R5492 |
T8109 |
T8110 |
compound |
XpdTTD,†XPCS |
R5493 |
T8110 |
T8106 |
conj |
†XPCS,wt |
R5494 |
T8111 |
T8110 |
punct |
/,†XPCS |
R5495 |
T8112 |
T8083 |
punct |
.,Note |
R5496 |
T8114 |
T8115 |
punct |
(,B |
R5497 |
T8115 |
T8116 |
meta |
B,Radiographs |
R5498 |
T8117 |
T8115 |
punct |
),B |
R5499 |
T8118 |
T8116 |
prep |
of,Radiographs |
R5500 |
T8119 |
T8120 |
nummod |
20,mo |
R5501 |
T8120 |
T8122 |
npadvmod |
mo,old |
R5502 |
T8121 |
T8120 |
punct |
-,mo |
R5503 |
T8122 |
T8124 |
amod |
old,mice |
R5504 |
T8123 |
T8122 |
punct |
-,old |
R5505 |
T8124 |
T8118 |
pobj |
mice,of |
R5506 |
T8125 |
T8124 |
amod |
male,mice |
R5507 |
T8126 |
T8124 |
nmod |
wt,mice |
R5508 |
T8127 |
T8126 |
punct |
", ",wt |
R5509 |
T8128 |
T8129 |
compound |
XpdTTD,†XPCS |
R5510 |
T8129 |
T8126 |
conj |
†XPCS,wt |
R5511 |
T8130 |
T8129 |
punct |
/,†XPCS |
R5512 |
T8131 |
T8129 |
punct |
", ",†XPCS |
R5513 |
T8132 |
T8129 |
cc |
and,†XPCS |
R5514 |
T8133 |
T8134 |
compound |
XpdTTD,TTD |
R5515 |
T8134 |
T8129 |
conj |
TTD,†XPCS |
R5516 |
T8135 |
T8134 |
punct |
/,TTD |
R5517 |
T8136 |
T8116 |
punct |
.,Radiographs |
R5518 |
T8138 |
T8139 |
amod |
Ageing,mice |
R5519 |
T8139 |
T8143 |
nsubj |
mice,develop |
R5520 |
T8140 |
T8141 |
compound |
XpdTTD,TTD |
R5521 |
T8141 |
T8139 |
compound |
TTD,mice |
R5522 |
T8142 |
T8141 |
punct |
/,TTD |
R5523 |
T8144 |
T8143 |
dobj |
kyphosis,develop |
R5524 |
T8145 |
T8144 |
punct |
(,kyphosis |
R5525 |
T8146 |
T8144 |
appos |
curvature,kyphosis |
R5526 |
T8147 |
T8146 |
prep |
of,curvature |
R5527 |
T8148 |
T8149 |
det |
the,column |
R5528 |
T8149 |
T8147 |
pobj |
column,of |
R5529 |
T8150 |
T8149 |
amod |
spinal,column |
R5530 |
T8151 |
T8144 |
punct |
),kyphosis |
R5531 |
T8152 |
T8144 |
cc |
and,kyphosis |
R5532 |
T8153 |
T8144 |
conj |
reduction,kyphosis |
R5533 |
T8154 |
T8153 |
prep |
of,reduction |
R5534 |
T8155 |
T8156 |
compound |
bone,mineral |
R5535 |
T8156 |
T8157 |
compound |
mineral,density |
R5536 |
T8157 |
T8154 |
pobj |
density,of |
R5537 |
T8158 |
T8159 |
mark |
as,shown |
R5538 |
T8159 |
T8143 |
advcl |
shown,develop |
R5539 |
T8160 |
T8159 |
prep |
in,shown |
R5540 |
T8161 |
T8162 |
det |
the,segment |
R5541 |
T8162 |
T8160 |
pobj |
segment,in |
R5542 |
T8163 |
T8164 |
quantmod |
6,8 |
R5543 |
T8164 |
T8162 |
nummod |
8,segment |
R5544 |
T8165 |
T8164 |
punct |
–,8 |
R5545 |
T8166 |
T8162 |
prep |
of,segment |
R5546 |
T8167 |
T8168 |
det |
the,vertebrae |
R5547 |
T8168 |
T8166 |
pobj |
vertebrae,of |
R5548 |
T8169 |
T8168 |
compound |
tail,vertebrae |
R5549 |
T8170 |
T8162 |
acl |
counted,segment |
R5550 |
T8171 |
T8170 |
prep |
from,counted |
R5551 |
T8172 |
T8173 |
det |
the,pelvis |
R5552 |
T8173 |
T8171 |
pobj |
pelvis,from |
R5553 |
T8174 |
T8175 |
punct |
(,see |
R5554 |
T8175 |
T8143 |
parataxis |
see,develop |
R5555 |
T8176 |
T8175 |
dobj |
close,see |
R5556 |
T8177 |
T8176 |
punct |
-,close |
R5557 |
T8178 |
T8176 |
prt |
up,close |
R5558 |
T8179 |
T8176 |
prep |
at,close |
R5559 |
T8180 |
T8179 |
pobj |
right,at |
R5560 |
T8181 |
T8175 |
punct |
),see |
R5561 |
T8182 |
T8143 |
punct |
.,develop |
R5562 |
T8185 |
T8186 |
det |
the,absence |
R5563 |
T8186 |
T8184 |
dobj |
absence,Note |
R5564 |
T8187 |
T8186 |
prep |
of,absence |
R5565 |
T8188 |
T8189 |
det |
these,features |
R5566 |
T8189 |
T8187 |
pobj |
features,of |
R5567 |
T8190 |
T8186 |
prep |
in,absence |
R5568 |
T8191 |
T8192 |
det |
the,mouse |
R5569 |
T8192 |
T8190 |
pobj |
mouse,in |
R5570 |
T8193 |
T8194 |
compound |
XpdTTD , † XPCS |
R5571 |
T8194 |
T8192 |
compound |
† XPCS,mouse |
R5572 |
T8195 |
T8194 |
punct |
/, † XPCS |
R5573 |
T8196 |
T8184 |
punct |
.,Note |
R5574 |
T8198 |
T8199 |
punct |
(,C |
R5575 |
T8199 |
T8200 |
meta |
C,Quantification |
R5576 |
T8201 |
T8199 |
punct |
),C |
R5577 |
T8202 |
T8200 |
prep |
of,Quantification |
R5578 |
T8203 |
T8204 |
amod |
relative,density |
R5579 |
T8204 |
T8202 |
pobj |
density,of |
R5580 |
T8205 |
T8206 |
compound |
bone,mineral |
R5581 |
T8206 |
T8204 |
compound |
mineral,density |
R5582 |
T8207 |
T8204 |
prep |
of,density |
R5583 |
T8208 |
T8209 |
compound |
tail,vertebrae |
R5584 |
T8209 |
T8207 |
pobj |
vertebrae,of |
R5585 |
T8210 |
T8209 |
prep |
from,vertebrae |
R5586 |
T8211 |
T8212 |
nummod |
20,mo |
R5587 |
T8212 |
T8214 |
npadvmod |
mo,old |
R5588 |
T8213 |
T8212 |
punct |
-,mo |
R5589 |
T8214 |
T8216 |
amod |
old,mice |
R5590 |
T8215 |
T8214 |
punct |
-,old |
R5591 |
T8216 |
T8210 |
pobj |
mice,from |
R5592 |
T8217 |
T8216 |
amod |
male,mice |
R5593 |
T8218 |
T8216 |
nmod |
wt,mice |
R5594 |
T8219 |
T8220 |
punct |
(,3 |
R5595 |
T8220 |
T8218 |
parataxis |
3,wt |
R5596 |
T8221 |
T8220 |
nsubj |
n,3 |
R5597 |
T8222 |
T8220 |
punct |
=,3 |
R5598 |
T8223 |
T8220 |
punct |
),3 |
R5599 |
T8224 |
T8218 |
punct |
", ",wt |
R5600 |
T8225 |
T8226 |
compound |
XpdTTD,†XPCS |
R5601 |
T8226 |
T8218 |
conj |
†XPCS,wt |
R5602 |
T8227 |
T8226 |
punct |
/,†XPCS |
R5603 |
T8228 |
T8229 |
punct |
(,4 |
R5604 |
T8229 |
T8226 |
parataxis |
4,†XPCS |
R5605 |
T8230 |
T8229 |
nsubj |
n,4 |
R5606 |
T8231 |
T8229 |
punct |
=,4 |
R5607 |
T8232 |
T8229 |
punct |
),4 |
R5608 |
T8233 |
T8226 |
punct |
", ",†XPCS |
R5609 |
T8234 |
T8226 |
cc |
and,†XPCS |
R5610 |
T8235 |
T8236 |
compound |
XpdTTD,TTD |
R5611 |
T8236 |
T8226 |
conj |
TTD,†XPCS |
R5612 |
T8237 |
T8236 |
punct |
/,TTD |
R5613 |
T8238 |
T8239 |
punct |
(,3 |
R5614 |
T8239 |
T8236 |
parataxis |
3,TTD |
R5615 |
T8240 |
T8239 |
nsubj |
n,3 |
R5616 |
T8241 |
T8239 |
punct |
=,3 |
R5617 |
T8242 |
T8239 |
punct |
),3 |
R5618 |
T8243 |
T8200 |
punct |
.,Quantification |
R5619 |
T8245 |
T8246 |
det |
The,values |
R5620 |
T8246 |
T8249 |
nsubj |
values,indicate |
R5621 |
T8247 |
T8246 |
compound |
p,values |
R5622 |
T8248 |
T8246 |
punct |
-,values |
R5623 |
T8250 |
T8251 |
det |
the,significance |
R5624 |
T8251 |
T8249 |
dobj |
significance,indicate |
R5625 |
T8252 |
T8251 |
prep |
of,significance |
R5626 |
T8253 |
T8254 |
det |
the,difference |
R5627 |
T8254 |
T8252 |
pobj |
difference,of |
R5628 |
T8255 |
T8249 |
advcl |
relative,indicate |
R5629 |
T8256 |
T8255 |
prep |
to,relative |
R5630 |
T8257 |
T8258 |
compound |
XpdTTD,TTD |
R5631 |
T8258 |
T8256 |
pobj |
TTD,to |
R5632 |
T8259 |
T8258 |
punct |
/,TTD |
R5633 |
T8260 |
T8249 |
punct |
.,indicate |
R5634 |
T8262 |
T8263 |
compound |
Error,bars |
R5635 |
T8263 |
T8264 |
nsubj |
bars,indicate |
R5636 |
T8265 |
T8264 |
dobj |
SEM,indicate |
R5637 |
T8266 |
T8264 |
punct |
.,indicate |
R5638 |
T8268 |
T8269 |
punct |
(,D |
R5639 |
T8269 |
T8270 |
meta |
D,curves |
R5640 |
T8271 |
T8269 |
punct |
),D |
R5641 |
T8272 |
T8273 |
compound |
Body,weight |
R5642 |
T8273 |
T8270 |
compound |
weight,curves |
R5643 |
T8274 |
T8270 |
prep |
as,curves |
R5644 |
T8275 |
T8276 |
det |
a,function |
R5645 |
T8276 |
T8274 |
pobj |
function,as |
R5646 |
T8277 |
T8276 |
prep |
of,function |
R5647 |
T8278 |
T8277 |
pobj |
time,of |
R5648 |
T8279 |
T8270 |
punct |
.,curves |
R5649 |
T8282 |
T8283 |
mark |
that,rescued |
R5650 |
T8283 |
T8281 |
ccomp |
rescued,Note |
R5651 |
T8284 |
T8285 |
det |
the,cachexia |
R5652 |
T8285 |
T8283 |
nsubjpass |
cachexia,rescued |
R5653 |
T8286 |
T8287 |
npadvmod |
age,dependent |
R5654 |
T8287 |
T8285 |
amod |
dependent,cachexia |
R5655 |
T8288 |
T8287 |
punct |
-,dependent |
R5656 |
T8289 |
T8285 |
acl |
observed,cachexia |
R5657 |
T8290 |
T8289 |
prep |
in,observed |
R5658 |
T8291 |
T8292 |
compound |
XpdTTD,TTD |
R5659 |
T8292 |
T8294 |
compound |
TTD,mice |
R5660 |
T8293 |
T8292 |
punct |
/,TTD |
R5661 |
T8294 |
T8290 |
pobj |
mice,in |
R5662 |
T8295 |
T8283 |
auxpass |
was,rescued |
R5663 |
T8296 |
T8283 |
prep |
in,rescued |
R5664 |
T8297 |
T8298 |
preconj |
both,male |
R5665 |
T8298 |
T8299 |
nmod |
male,mice |
R5666 |
T8299 |
T8296 |
pobj |
mice,in |
R5667 |
T8300 |
T8298 |
cc |
and,male |
R5668 |
T8301 |
T8298 |
conj |
female,male |
R5669 |
T8302 |
T8303 |
compound |
XpdTTD , †XPCS |
R5670 |
T8303 |
T8299 |
compound |
†XPCS,mice |
R5671 |
T8304 |
T8303 |
punct |
/, †XPCS |
R5672 |
T8305 |
T8281 |
punct |
.,Note |
R5673 |
T8307 |
T8308 |
amod |
Significant,differences |
R5674 |
T8308 |
T8309 |
nsubjpass |
differences,observed |
R5675 |
T8310 |
T8308 |
prep |
between,differences |
R5676 |
T8311 |
T8310 |
pobj |
wt,between |
R5677 |
T8312 |
T8311 |
cc |
and,wt |
R5678 |
T8313 |
T8314 |
compound |
XpdTTD,TTD |
R5679 |
T8314 |
T8311 |
conj |
TTD,wt |
R5680 |
T8315 |
T8314 |
punct |
/,TTD |
R5681 |
T8316 |
T8310 |
cc |
but,between |
R5682 |
T8317 |
T8316 |
neg |
not,but |
R5683 |
T8318 |
T8310 |
conj |
between,between |
R5684 |
T8319 |
T8320 |
nmod |
wt,mice |
R5685 |
T8320 |
T8318 |
pobj |
mice,between |
R5686 |
T8321 |
T8319 |
cc |
and,wt |
R5687 |
T8322 |
T8323 |
compound |
XpdTTD,†XPCS |
R5688 |
T8323 |
T8319 |
conj |
†XPCS,wt |
R5689 |
T8324 |
T8323 |
punct |
/,†XPCS |
R5690 |
T8325 |
T8309 |
auxpass |
were,observed |
R5691 |
T8326 |
T8309 |
prep |
at,observed |
R5692 |
T8327 |
T8328 |
nummod |
9,mo |
R5693 |
T8328 |
T8326 |
pobj |
mo,at |
R5694 |
T8329 |
T8327 |
cc |
and,9 |
R5695 |
T8330 |
T8327 |
conj |
18,9 |
R5696 |
T8331 |
T8328 |
prep |
of,mo |
R5697 |
T8332 |
T8331 |
pobj |
age,of |
R5698 |
T8333 |
T8334 |
mark |
as,indicated |
R5699 |
T8334 |
T8309 |
advcl |
indicated,observed |
R5700 |
T8335 |
T8334 |
agent |
by,indicated |
R5701 |
T8336 |
T8335 |
pobj |
asterisks,by |
R5702 |
T8337 |
T8309 |
punct |
.,observed |
R5703 |
T8339 |
T8340 |
compound |
Error,bars |
R5704 |
T8340 |
T8341 |
nsubj |
bars,indicate |
R5705 |
T8342 |
T8341 |
dobj |
SEM,indicate |
R5706 |
T8343 |
T8341 |
punct |
.,indicate |
R5707 |
T8564 |
T8565 |
compound |
TFIIH,Functions |
R5708 |
T8566 |
T8565 |
cc |
and,Functions |
R5709 |
T8567 |
T8565 |
conj |
Mechanisms,Functions |
R5710 |
T8568 |
T8567 |
prep |
of,Mechanisms |
R5711 |
T8569 |
T8570 |
npadvmod |
XPD,Associated |
R5712 |
T8570 |
T8572 |
amod |
Associated,Pleiotropy |
R5713 |
T8571 |
T8570 |
punct |
-,Associated |
R5714 |
T8572 |
T8568 |
pobj |
Pleiotropy,of |
R5715 |
T8573 |
T8572 |
compound |
Disease,Pleiotropy |
R5716 |
T8575 |
T8576 |
punct |
(,A |
R5717 |
T8576 |
T8577 |
meta |
A,survival |
R5718 |
T8578 |
T8576 |
punct |
),A |
R5719 |
T8579 |
T8577 |
amod |
Cellular,survival |
R5720 |
T8580 |
T8577 |
prep |
after,survival |
R5721 |
T8581 |
T8582 |
compound |
UV,irradiation |
R5722 |
T8582 |
T8580 |
pobj |
irradiation,after |
R5723 |
T8583 |
T8577 |
punct |
.,survival |
R5724 |
T8585 |
T8586 |
nsubjpass |
Rescue,illustrated |
R5725 |
T8587 |
T8585 |
prep |
of,Rescue |
R5726 |
T8588 |
T8589 |
amod |
hemizygous,survival |
R5727 |
T8589 |
T8587 |
pobj |
survival,of |
R5728 |
T8590 |
T8591 |
compound |
XpdTTD,KO |
R5729 |
T8591 |
T8589 |
compound |
KO,survival |
R5730 |
T8592 |
T8591 |
punct |
/,KO |
R5731 |
T8593 |
T8585 |
prep |
by,Rescue |
R5732 |
T8594 |
T8595 |
nmod |
Xpd†XPCS,alleles |
R5733 |
T8595 |
T8593 |
pobj |
alleles,by |
R5734 |
T8596 |
T8594 |
cc |
and,Xpd†XPCS |
R5735 |
T8597 |
T8594 |
conj |
Xpd†XP,Xpd†XPCS |
R5736 |
T8598 |
T8586 |
auxpass |
is,illustrated |
R5737 |
T8599 |
T8586 |
agent |
by,illustrated |
R5738 |
T8600 |
T8599 |
pobj |
arrows,by |
R5739 |
T8601 |
T8600 |
acl |
marked,arrows |
R5740 |
T8602 |
T8601 |
oprd |
A,marked |
R5741 |
T8603 |
T8602 |
cc |
and,A |
R5742 |
T8604 |
T8602 |
conj |
B,A |
R5743 |
T8605 |
T8601 |
punct |
", ",marked |
R5744 |
T8606 |
T8601 |
advmod |
respectively,marked |
R5745 |
T8607 |
T8586 |
punct |
.,illustrated |
R5746 |
T8609 |
T8610 |
compound |
UV,survival |
R5747 |
T8610 |
T8611 |
nsubjpass |
survival,depicted |
R5748 |
T8612 |
T8610 |
prep |
of,survival |
R5749 |
T8613 |
T8614 |
amod |
homozygous,cells |
R5750 |
T8614 |
T8612 |
pobj |
cells,of |
R5751 |
T8615 |
T8616 |
compound |
XpdXPCS,XPCS |
R5752 |
T8616 |
T8614 |
compound |
XPCS,cells |
R5753 |
T8617 |
T8616 |
punct |
/,XPCS |
R5754 |
T8618 |
T8619 |
punct |
(,asterisk |
R5755 |
T8619 |
T8614 |
parataxis |
asterisk,cells |
R5756 |
T8620 |
T8619 |
punct |
),asterisk |
R5757 |
T8621 |
T8614 |
prep |
from,cells |
R5758 |
T8622 |
T8623 |
det |
the,allele |
R5759 |
T8623 |
T8621 |
pobj |
allele,from |
R5760 |
T8624 |
T8625 |
advmod |
normally,expressed |
R5761 |
T8625 |
T8623 |
amod |
expressed,allele |
R5762 |
T8626 |
T8623 |
amod |
viable,allele |
R5763 |
T8627 |
T8628 |
punct |
(,XpdXPCS |
R5764 |
T8628 |
T8623 |
parataxis |
XpdXPCS,allele |
R5765 |
T8629 |
T8628 |
punct |
),XpdXPCS |
R5766 |
T8630 |
T8611 |
auxpass |
is,depicted |
R5767 |
T8631 |
T8611 |
prep |
by,depicted |
R5768 |
T8632 |
T8633 |
det |
a,line |
R5769 |
T8633 |
T8631 |
pobj |
line,by |
R5770 |
T8634 |
T8633 |
amod |
dotted,line |
R5771 |
T8635 |
T8611 |
punct |
.,depicted |
R5772 |
T8637 |
T8638 |
compound |
Survival,curves |
R5773 |
T8638 |
T8639 |
nsubj |
curves,represent |
R5774 |
T8639 |
T8640 |
ccomp |
represent,included |
R5775 |
T8641 |
T8642 |
det |
an,average |
R5776 |
T8642 |
T8639 |
dobj |
average,represent |
R5777 |
T8643 |
T8642 |
prep |
of,average |
R5778 |
T8644 |
T8645 |
nummod |
four,experiments |
R5779 |
T8645 |
T8643 |
pobj |
experiments,of |
R5780 |
T8646 |
T8645 |
amod |
independent,experiments |
R5781 |
T8647 |
T8640 |
punct |
;,included |
R5782 |
T8648 |
T8649 |
quantmod |
1,2 |
R5783 |
T8649 |
T8651 |
nummod |
2,lines |
R5784 |
T8650 |
T8649 |
punct |
–,2 |
R5785 |
T8651 |
T8640 |
nsubjpass |
lines,included |
R5786 |
T8652 |
T8651 |
compound |
cell,lines |
R5787 |
T8653 |
T8651 |
prep |
per,lines |
R5788 |
T8654 |
T8653 |
pobj |
genotype,per |
R5789 |
T8655 |
T8640 |
auxpass |
were,included |
R5790 |
T8656 |
T8640 |
prep |
in,included |
R5791 |
T8657 |
T8658 |
det |
each,experiment |
R5792 |
T8658 |
T8656 |
pobj |
experiment,in |
R5793 |
T8659 |
T8640 |
punct |
.,included |
R5794 |
T8661 |
T8662 |
compound |
Error,bars |
R5795 |
T8662 |
T8663 |
nsubj |
bars,indicate |
R5796 |
T8664 |
T8663 |
dobj |
SEM,indicate |
R5797 |
T8665 |
T8664 |
prep |
between,SEM |
R5798 |
T8666 |
T8665 |
pobj |
experiments,between |
R5799 |
T8667 |
T8663 |
punct |
.,indicate |
R5800 |
T8669 |
T8670 |
punct |
(,B |
R5801 |
T8670 |
T8671 |
meta |
B,UDS |
R5802 |
T8672 |
T8670 |
punct |
),B |
R5803 |
T8673 |
T8671 |
compound |
UV,UDS |
R5804 |
T8674 |
T8671 |
punct |
-,UDS |
R5805 |
T8675 |
T8671 |
punct |
", ",UDS |
R5806 |
T8676 |
T8677 |
det |
a,measure |
R5807 |
T8677 |
T8671 |
appos |
measure,UDS |
R5808 |
T8678 |
T8677 |
prep |
of,measure |
R5809 |
T8679 |
T8680 |
amod |
global,repair |
R5810 |
T8680 |
T8678 |
pobj |
repair,of |
R5811 |
T8681 |
T8680 |
compound |
genome,repair |
R5812 |
T8682 |
T8671 |
punct |
.,UDS |
R5813 |
T8684 |
T8685 |
dep |
Number,included |
R5814 |
T8686 |
T8684 |
prep |
of,Number |
R5815 |
T8687 |
T8686 |
pobj |
experiments,of |
R5816 |
T8688 |
T8685 |
punct |
: ,included |
R5817 |
T8689 |
T8690 |
nsubj |
n,15 |
R5818 |
T8690 |
T8685 |
ccomp |
15,included |
R5819 |
T8691 |
T8690 |
punct |
=,15 |
R5820 |
T8692 |
T8693 |
punct |
(,XpdTTD |
R5821 |
T8693 |
T8690 |
parataxis |
XpdTTD,15 |
R5822 |
T8694 |
T8693 |
punct |
/,XpdTTD |
R5823 |
T8695 |
T8693 |
dep |
TTD,XpdTTD |
R5824 |
T8696 |
T8693 |
punct |
),XpdTTD |
R5825 |
T8697 |
T8685 |
punct |
", ",included |
R5826 |
T8698 |
T8699 |
nsubj |
n,6 |
R5827 |
T8699 |
T8685 |
ccomp |
6,included |
R5828 |
T8700 |
T8699 |
punct |
=,6 |
R5829 |
T8701 |
T8702 |
punct |
(,KO |
R5830 |
T8702 |
T8699 |
parataxis |
KO,6 |
R5831 |
T8703 |
T8702 |
compound |
XpdTTD,KO |
R5832 |
T8704 |
T8702 |
punct |
/,KO |
R5833 |
T8705 |
T8702 |
punct |
),KO |
R5834 |
T8706 |
T8685 |
punct |
", ",included |
R5835 |
T8707 |
T8708 |
nsubj |
n,4 |
R5836 |
T8708 |
T8685 |
ccomp |
4,included |
R5837 |
T8709 |
T8708 |
punct |
=,4 |
R5838 |
T8710 |
T8711 |
punct |
(,†XPCS |
R5839 |
T8711 |
T8708 |
parataxis |
†XPCS,4 |
R5840 |
T8712 |
T8711 |
compound |
XpdTTD,†XPCS |
R5841 |
T8713 |
T8711 |
punct |
/,†XPCS |
R5842 |
T8714 |
T8711 |
punct |
),†XPCS |
R5843 |
T8715 |
T8685 |
punct |
", ",included |
R5844 |
T8716 |
T8717 |
nsubj |
n,2 |
R5845 |
T8717 |
T8685 |
ccomp |
2,included |
R5846 |
T8718 |
T8717 |
punct |
=,2 |
R5847 |
T8719 |
T8720 |
punct |
(,†XP |
R5848 |
T8720 |
T8717 |
parataxis |
†XP,2 |
R5849 |
T8721 |
T8720 |
compound |
XpdTTD,†XP |
R5850 |
T8722 |
T8720 |
punct |
/,†XP |
R5851 |
T8723 |
T8720 |
punct |
),†XP |
R5852 |
T8724 |
T8685 |
punct |
;,included |
R5853 |
T8725 |
T8726 |
quantmod |
1,2 |
R5854 |
T8726 |
T8728 |
nummod |
2,lines |
R5855 |
T8727 |
T8726 |
punct |
–,2 |
R5856 |
T8728 |
T8685 |
nsubjpass |
lines,included |
R5857 |
T8729 |
T8728 |
compound |
cell,lines |
R5858 |
T8730 |
T8728 |
prep |
per,lines |
R5859 |
T8731 |
T8730 |
pobj |
genotype,per |
R5860 |
T8732 |
T8685 |
auxpass |
were,included |
R5861 |
T8733 |
T8685 |
prep |
in,included |
R5862 |
T8734 |
T8735 |
det |
each,experiment |
R5863 |
T8735 |
T8733 |
pobj |
experiment,in |
R5864 |
T8736 |
T8685 |
punct |
.,included |
R5865 |
T8738 |
T8739 |
det |
The,asterisk |
R5866 |
T8739 |
T8740 |
nsubj |
asterisk,indicates |
R5867 |
T8740 |
T8741 |
ccomp |
indicates,indicate |
R5868 |
T8742 |
T8743 |
amod |
significant,difference |
R5869 |
T8743 |
T8740 |
dobj |
difference,indicates |
R5870 |
T8744 |
T8743 |
prep |
with,difference |
R5871 |
T8745 |
T8746 |
compound |
XpdTTD,TTD |
R5872 |
T8746 |
T8744 |
pobj |
TTD,with |
R5873 |
T8747 |
T8746 |
punct |
/,TTD |
R5874 |
T8748 |
T8741 |
punct |
;,indicate |
R5875 |
T8749 |
T8741 |
nsubj |
crosses,indicate |
R5876 |
T8750 |
T8751 |
amod |
significant,differences |
R5877 |
T8751 |
T8741 |
dobj |
differences,indicate |
R5878 |
T8752 |
T8751 |
prep |
with,differences |
R5879 |
T8753 |
T8754 |
compound |
XpdTTD,KO |
R5880 |
T8754 |
T8752 |
pobj |
KO,with |
R5881 |
T8755 |
T8754 |
punct |
/,KO |
R5882 |
T8756 |
T8741 |
punct |
.,indicate |
R5883 |
T8758 |
T8759 |
punct |
(,C |
R5884 |
T8759 |
T8760 |
meta |
C,RRS |
R5885 |
T8761 |
T8759 |
punct |
),C |
R5886 |
T8762 |
T8760 |
compound |
UV,RRS |
R5887 |
T8763 |
T8760 |
punct |
-,RRS |
R5888 |
T8764 |
T8760 |
punct |
", ",RRS |
R5889 |
T8765 |
T8766 |
det |
a,measure |
R5890 |
T8766 |
T8760 |
appos |
measure,RRS |
R5891 |
T8767 |
T8766 |
prep |
of,measure |
R5892 |
T8768 |
T8769 |
npadvmod |
transcription,coupled |
R5893 |
T8769 |
T8771 |
amod |
coupled,repair |
R5894 |
T8770 |
T8769 |
punct |
-,coupled |
R5895 |
T8771 |
T8767 |
pobj |
repair,of |
R5896 |
T8772 |
T8771 |
prep |
of,repair |
R5897 |
T8773 |
T8774 |
npadvmod |
UV,induced |
R5898 |
T8774 |
T8776 |
amod |
induced,lesions |
R5899 |
T8775 |
T8774 |
punct |
-,induced |
R5900 |
T8776 |
T8772 |
pobj |
lesions,of |
R5901 |
T8777 |
T8760 |
punct |
.,RRS |
R5902 |
T8779 |
T8780 |
dep |
Number,included |
R5903 |
T8781 |
T8779 |
prep |
of,Number |
R5904 |
T8782 |
T8781 |
pobj |
experiments,of |
R5905 |
T8783 |
T8780 |
punct |
: ,included |
R5906 |
T8784 |
T8785 |
nsubj |
n,7 |
R5907 |
T8785 |
T8780 |
ccomp |
7,included |
R5908 |
T8786 |
T8785 |
punct |
=,7 |
R5909 |
T8787 |
T8788 |
punct |
(,TTD |
R5910 |
T8788 |
T8785 |
parataxis |
TTD,7 |
R5911 |
T8789 |
T8788 |
compound |
XpdTTD,TTD |
R5912 |
T8790 |
T8788 |
punct |
/,TTD |
R5913 |
T8791 |
T8788 |
punct |
),TTD |
R5914 |
T8792 |
T8780 |
punct |
", ",included |
R5915 |
T8793 |
T8794 |
nsubj |
n,2 |
R5916 |
T8794 |
T8780 |
ccomp |
2,included |
R5917 |
T8795 |
T8794 |
punct |
=,2 |
R5918 |
T8796 |
T8797 |
punct |
(,KO |
R5919 |
T8797 |
T8794 |
parataxis |
KO,2 |
R5920 |
T8798 |
T8797 |
compound |
XpdTTD,KO |
R5921 |
T8799 |
T8797 |
punct |
/,KO |
R5922 |
T8800 |
T8797 |
punct |
),KO |
R5923 |
T8801 |
T8780 |
punct |
", ",included |
R5924 |
T8802 |
T8803 |
nsubj |
n,4 |
R5925 |
T8803 |
T8780 |
ccomp |
4,included |
R5926 |
T8804 |
T8803 |
punct |
=,4 |
R5927 |
T8805 |
T8806 |
punct |
(,†XPCS |
R5928 |
T8806 |
T8803 |
parataxis |
†XPCS,4 |
R5929 |
T8807 |
T8806 |
compound |
XpdTTD,†XPCS |
R5930 |
T8808 |
T8806 |
punct |
/,†XPCS |
R5931 |
T8809 |
T8806 |
punct |
),†XPCS |
R5932 |
T8810 |
T8780 |
punct |
", ",included |
R5933 |
T8811 |
T8812 |
nsubj |
n,2 |
R5934 |
T8812 |
T8780 |
ccomp |
2,included |
R5935 |
T8813 |
T8812 |
punct |
=,2 |
R5936 |
T8814 |
T8815 |
punct |
(,†XP |
R5937 |
T8815 |
T8812 |
parataxis |
†XP,2 |
R5938 |
T8816 |
T8815 |
compound |
XpdTTD,†XP |
R5939 |
T8817 |
T8815 |
punct |
/,†XP |
R5940 |
T8818 |
T8815 |
punct |
),†XP |
R5941 |
T8819 |
T8780 |
punct |
;,included |
R5942 |
T8820 |
T8821 |
quantmod |
1,2 |
R5943 |
T8821 |
T8823 |
nummod |
2,lines |
R5944 |
T8822 |
T8821 |
punct |
–,2 |
R5945 |
T8823 |
T8780 |
nsubjpass |
lines,included |
R5946 |
T8824 |
T8823 |
compound |
cell,lines |
R5947 |
T8825 |
T8823 |
prep |
per,lines |
R5948 |
T8826 |
T8825 |
pobj |
genotype,per |
R5949 |
T8827 |
T8780 |
auxpass |
were,included |
R5950 |
T8828 |
T8780 |
prep |
in,included |
R5951 |
T8829 |
T8830 |
det |
each,experiment |
R5952 |
T8830 |
T8828 |
pobj |
experiment,in |
R5953 |
T8831 |
T8780 |
punct |
.,included |
R5954 |
T8833 |
T8834 |
punct |
(,D |
R5955 |
T8834 |
T8835 |
meta |
D,activity |
R5956 |
T8836 |
T8834 |
punct |
),D |
R5957 |
T8837 |
T8838 |
compound |
Incision,excision |
R5958 |
T8838 |
T8835 |
compound |
excision,activity |
R5959 |
T8839 |
T8838 |
punct |
/,excision |
R5960 |
T8840 |
T8835 |
prep |
of,activity |
R5961 |
T8841 |
T8840 |
pobj |
combinations,of |
R5962 |
T8842 |
T8841 |
prep |
of,combinations |
R5963 |
T8843 |
T8844 |
amod |
altered,complexes |
R5964 |
T8844 |
T8842 |
pobj |
complexes,of |
R5965 |
T8845 |
T8844 |
compound |
TFIIH,complexes |
R5966 |
T8846 |
T8844 |
prep |
in,complexes |
R5967 |
T8847 |
T8848 |
det |
a,reaction |
R5968 |
T8848 |
T8846 |
pobj |
reaction,in |
R5969 |
T8849 |
T8848 |
amod |
reconstituted,reaction |
R5970 |
T8850 |
T8848 |
compound |
NER,reaction |
R5971 |
T8851 |
T8835 |
punct |
.,activity |
R5972 |
T8853 |
T8854 |
amod |
Equal,amounts |
R5973 |
T8854 |
T8855 |
nsubjpass |
amounts,mixed |
R5974 |
T8856 |
T8854 |
prep |
of,amounts |
R5975 |
T8857 |
T8858 |
amod |
single,populations |
R5976 |
T8858 |
T8856 |
pobj |
populations,of |
R5977 |
T8859 |
T8857 |
cc |
or,single |
R5978 |
T8860 |
T8857 |
conj |
mixed,single |
R5979 |
T8861 |
T8858 |
prep |
of,populations |
R5980 |
T8862 |
T8863 |
amod |
recombinant,TFIIHs |
R5981 |
T8863 |
T8861 |
pobj |
TFIIHs,of |
R5982 |
T8864 |
T8858 |
punct |
(,populations |
R5983 |
T8865 |
T8858 |
acl |
containing,populations |
R5984 |
T8866 |
T8865 |
dobj |
XPD,containing |
R5985 |
T8867 |
T8866 |
punct |
", ",XPD |
R5986 |
T8868 |
T8866 |
conj |
XPB,XPD |
R5987 |
T8869 |
T8868 |
punct |
", ",XPB |
R5988 |
T8870 |
T8868 |
conj |
p62,XPB |
R5989 |
T8871 |
T8870 |
punct |
", ",p62 |
R5990 |
T8872 |
T8870 |
conj |
p52,p62 |
R5991 |
T8873 |
T8872 |
punct |
", ",p52 |
R5992 |
T8874 |
T8875 |
compound |
His,p44 |
R5993 |
T8875 |
T8872 |
conj |
p44,p52 |
R5994 |
T8876 |
T8875 |
punct |
-,p44 |
R5995 |
T8877 |
T8875 |
punct |
", ",p44 |
R5996 |
T8878 |
T8879 |
compound |
Flag,p34 |
R5997 |
T8879 |
T8875 |
conj |
p34,p44 |
R5998 |
T8880 |
T8879 |
punct |
-,p34 |
R5999 |
T8881 |
T8879 |
punct |
", ",p34 |
R6000 |
T8882 |
T8879 |
conj |
cdk7,p34 |
R6001 |
T8883 |
T8882 |
punct |
", ",cdk7 |
R6002 |
T8884 |
T8885 |
compound |
cyclin,H |
R6003 |
T8885 |
T8882 |
conj |
H,cdk7 |
R6004 |
T8886 |
T8885 |
punct |
", ",H |
R6005 |
T8887 |
T8885 |
conj |
Mat1,H |
R6006 |
T8888 |
T8887 |
punct |
", ",Mat1 |
R6007 |
T8889 |
T8887 |
cc |
and,Mat1 |
R6008 |
T8890 |
T8887 |
conj |
p8,Mat1 |
R6009 |
T8891 |
T8855 |
punct |
),mixed |
R6010 |
T8892 |
T8855 |
auxpass |
were,mixed |
R6011 |
T8893 |
T8855 |
prep |
with,mixed |
R6012 |
T8894 |
T8895 |
amod |
recombinant,XPG |
R6013 |
T8895 |
T8893 |
pobj |
XPG,with |
R6014 |
T8896 |
T8895 |
punct |
", ",XPG |
R6015 |
T8897 |
T8898 |
compound |
XPF,ERCC1 |
R6016 |
T8898 |
T8895 |
appos |
ERCC1,XPG |
R6017 |
T8899 |
T8898 |
punct |
/,ERCC1 |
R6018 |
T8900 |
T8895 |
punct |
", ",XPG |
R6019 |
T8901 |
T8902 |
compound |
XPC,hHR23B |
R6020 |
T8902 |
T8895 |
appos |
hHR23B,XPG |
R6021 |
T8903 |
T8902 |
punct |
/,hHR23B |
R6022 |
T8904 |
T8895 |
punct |
", ",XPG |
R6023 |
T8905 |
T8895 |
appos |
RPA,XPG |
R6024 |
T8906 |
T8895 |
punct |
", ",XPG |
R6025 |
T8907 |
T8895 |
cc |
and,XPG |
R6026 |
T8908 |
T8909 |
det |
a,substrate |
R6027 |
T8909 |
T8895 |
conj |
substrate,XPG |
R6028 |
T8910 |
T8909 |
amod |
radiolabelled,substrate |
R6029 |
T8911 |
T8909 |
amod |
synthetic,substrate |
R6030 |
T8912 |
T8909 |
compound |
NER,substrate |
R6031 |
T8913 |
T8855 |
punct |
.,mixed |
R6032 |
T8915 |
T8916 |
det |
The,products |
R6033 |
T8916 |
T8918 |
nsubjpass |
products,visualised |
R6034 |
T8917 |
T8916 |
compound |
excision,products |
R6035 |
T8919 |
T8920 |
punct |
(,nucleotides |
R6036 |
T8920 |
T8916 |
parataxis |
nucleotides,products |
R6037 |
T8921 |
T8922 |
quantmod |
26,34 |
R6038 |
T8922 |
T8920 |
nummod |
34,nucleotides |
R6039 |
T8923 |
T8922 |
punct |
–,34 |
R6040 |
T8924 |
T8920 |
prep |
in,nucleotides |
R6041 |
T8925 |
T8924 |
pobj |
length,in |
R6042 |
T8926 |
T8920 |
punct |
),nucleotides |
R6043 |
T8927 |
T8918 |
auxpass |
were,visualised |
R6044 |
T8928 |
T8918 |
prep |
at,visualised |
R6045 |
T8929 |
T8930 |
compound |
nucleotide,resolution |
R6046 |
T8930 |
T8928 |
pobj |
resolution,at |
R6047 |
T8931 |
T8918 |
prep |
on,visualised |
R6048 |
T8932 |
T8933 |
det |
a,gel |
R6049 |
T8933 |
T8931 |
pobj |
gel,on |
R6050 |
T8934 |
T8933 |
amod |
denaturing,gel |
R6051 |
T8935 |
T8933 |
compound |
polyacrylamide,gel |
R6052 |
T8936 |
T8937 |
mark |
as,indicated |
R6053 |
T8937 |
T8918 |
advcl |
indicated,visualised |
R6054 |
T8938 |
T8918 |
punct |
.,visualised |
R6055 |
T8941 |
T8942 |
det |
the,activity |
R6056 |
T8942 |
T8940 |
dobj |
activity,Note |
R6057 |
T8943 |
T8942 |
amod |
weak,activity |
R6058 |
T8944 |
T8942 |
acl |
corresponding,activity |
R6059 |
T8945 |
T8944 |
prep |
to,corresponding |
R6060 |
T8946 |
T8947 |
det |
each,complex |
R6061 |
T8947 |
T8945 |
pobj |
complex,to |
R6062 |
T8948 |
T8947 |
amod |
single,complex |
R6063 |
T8949 |
T8948 |
cc |
and,single |
R6064 |
T8950 |
T8948 |
conj |
combined,single |
R6065 |
T8951 |
T8947 |
compound |
TFIIH,complex |
R6066 |
T8952 |
T8953 |
punct |
(,3 |
R6067 |
T8953 |
T8947 |
parataxis |
3,complex |
R6068 |
T8954 |
T8953 |
nmod |
lanes,3 |
R6069 |
T8955 |
T8956 |
punct |
–,8 |
R6070 |
T8956 |
T8953 |
prep |
8,3 |
R6071 |
T8957 |
T8953 |
punct |
),3 |
R6072 |
T8958 |
T8944 |
advcl |
relative,corresponding |
R6073 |
T8959 |
T8958 |
prep |
to,relative |
R6074 |
T8960 |
T8961 |
det |
the,wt |
R6075 |
T8961 |
T8959 |
pobj |
wt,to |
R6076 |
T8962 |
T8963 |
punct |
(,lane |
R6077 |
T8963 |
T8961 |
parataxis |
lane,wt |
R6078 |
T8964 |
T8963 |
nummod |
1,lane |
R6079 |
T8965 |
T8963 |
punct |
),lane |
R6080 |
T8966 |
T8961 |
cc |
and,wt |
R6081 |
T8967 |
T8968 |
amod |
negative,controls |
R6082 |
T8968 |
T8961 |
conj |
controls,wt |
R6083 |
T8969 |
T8970 |
punct |
(,lane |
R6084 |
T8970 |
T8968 |
parataxis |
lane,controls |
R6085 |
T8971 |
T8970 |
nummod |
2,lane |
R6086 |
T8972 |
T8970 |
punct |
),lane |
R6087 |
T8973 |
T8940 |
punct |
.,Note |
R6088 |
T8975 |
T8976 |
punct |
(,E |
R6089 |
T8976 |
T8977 |
meta |
E,reduction |
R6090 |
T8978 |
T8976 |
punct |
),E |
R6091 |
T8979 |
T8977 |
nmod |
Xpd,reduction |
R6092 |
T8980 |
T8981 |
npadvmod |
dose,dependent |
R6093 |
T8981 |
T8977 |
amod |
dependent,reduction |
R6094 |
T8982 |
T8981 |
punct |
-,dependent |
R6095 |
T8983 |
T8977 |
prep |
of,reduction |
R6096 |
T8984 |
T8983 |
pobj |
TFIIH,of |
R6097 |
T8985 |
T8977 |
prep |
in,reduction |
R6098 |
T8986 |
T8987 |
amod |
homozygous,TTD |
R6099 |
T8987 |
T8990 |
nmod |
TTD,cells |
R6100 |
T8988 |
T8987 |
nmod |
XpdTTD,TTD |
R6101 |
T8989 |
T8987 |
punct |
/,TTD |
R6102 |
T8990 |
T8985 |
pobj |
cells,in |
R6103 |
T8991 |
T8987 |
punct |
", ",TTD |
R6104 |
T8992 |
T8993 |
amod |
hemizygous,KO |
R6105 |
T8993 |
T8987 |
conj |
KO,TTD |
R6106 |
T8994 |
T8993 |
compound |
XpdTTD,KO |
R6107 |
T8995 |
T8993 |
punct |
/,KO |
R6108 |
T8996 |
T8993 |
punct |
", ",KO |
R6109 |
T8997 |
T8993 |
cc |
and,KO |
R6110 |
T8998 |
T8999 |
nmod |
compound,†XPCS |
R6111 |
T8999 |
T8993 |
conj |
†XPCS,KO |
R6112 |
T9000 |
T8999 |
amod |
heterozygous,†XPCS |
R6113 |
T9001 |
T8999 |
compound |
XpdTTD,†XPCS |
R6114 |
T9002 |
T8999 |
punct |
/,†XPCS |
R6115 |
T9003 |
T8999 |
cc |
and,†XPCS |
R6116 |
T9004 |
T9005 |
compound |
XpdTTD,†XP |
R6117 |
T9005 |
T8999 |
conj |
†XP,†XPCS |
R6118 |
T9006 |
T9005 |
punct |
/,†XP |
R6119 |
T9007 |
T8977 |
prep |
by,reduction |
R6120 |
T9008 |
T9009 |
amod |
comparative,immunofluorescence |
R6121 |
T9009 |
T9007 |
pobj |
immunofluorescence,by |
R6122 |
T9010 |
T9009 |
prep |
of,immunofluorescence |
R6123 |
T9011 |
T9012 |
det |
the,subunit |
R6124 |
T9012 |
T9010 |
pobj |
subunit,of |
R6125 |
T9013 |
T9012 |
compound |
p62,subunit |
R6126 |
T9014 |
T9012 |
prep |
of,subunit |
R6127 |
T9015 |
T9014 |
pobj |
TFIIH,of |
R6128 |
T9016 |
T8977 |
punct |
.,reduction |
R6129 |
T9018 |
T9019 |
amod |
Roman,numerals |
R6130 |
T9019 |
T9020 |
nsubj |
numerals,represent |
R6131 |
T9021 |
T9022 |
amod |
different,slides |
R6132 |
T9022 |
T9020 |
dobj |
slides,represent |
R6133 |
T9023 |
T9022 |
amod |
microscopic,slides |
R6134 |
T9024 |
T9020 |
cc |
and,represent |
R6135 |
T9025 |
T9026 |
amod |
Arabic,numerals |
R6136 |
T9026 |
T9027 |
nsubj |
numerals,lines |
R6137 |
T9027 |
T9020 |
conj |
lines,represent |
R6138 |
T9028 |
T9027 |
amod |
different,lines |
R6139 |
T9029 |
T9027 |
compound |
cell,lines |
R6140 |
T9030 |
T9027 |
acl |
labelled,lines |
R6141 |
T9031 |
T9032 |
mark |
as,follows |
R6142 |
T9032 |
T9030 |
advcl |
follows,labelled |
R6143 |
T9033 |
T9027 |
punct |
: ,lines |
R6144 |
T9034 |
T9035 |
punct |
(,I |
R6145 |
T9035 |
T9036 |
meta |
I,cells |
R6146 |
T9036 |
T9027 |
dep |
cells,lines |
R6147 |
T9037 |
T9035 |
punct |
),I |
R6148 |
T9038 |
T9036 |
compound |
wt,cells |
R6149 |
T9039 |
T9040 |
punct |
(,1 |
R6150 |
T9040 |
T9036 |
parataxis |
1,cells |
R6151 |
T9041 |
T9040 |
punct |
),1 |
R6152 |
T9042 |
T9036 |
acl |
labelled,cells |
R6153 |
T9043 |
T9042 |
prep |
with,labelled |
R6154 |
T9044 |
T9045 |
nummod |
2,μm |
R6155 |
T9045 |
T9047 |
compound |
μm,beads |
R6156 |
T9046 |
T9045 |
punct |
-,μm |
R6157 |
T9047 |
T9043 |
pobj |
beads,with |
R6158 |
T9048 |
T9036 |
punct |
", ",cells |
R6159 |
T9049 |
T9050 |
compound |
XpdTTD,TTD |
R6160 |
T9050 |
T9052 |
compound |
TTD,cells |
R6161 |
T9051 |
T9050 |
punct |
/,TTD |
R6162 |
T9052 |
T9036 |
conj |
cells,cells |
R6163 |
T9053 |
T9054 |
punct |
(,2 |
R6164 |
T9054 |
T9052 |
parataxis |
2,cells |
R6165 |
T9055 |
T9054 |
punct |
),2 |
R6166 |
T9056 |
T9052 |
prep |
with,cells |
R6167 |
T9057 |
T9058 |
nummod |
0.79,μm |
R6168 |
T9058 |
T9060 |
compound |
μm,beads |
R6169 |
T9059 |
T9058 |
punct |
-,μm |
R6170 |
T9060 |
T9056 |
pobj |
beads,with |
R6171 |
T9061 |
T9052 |
punct |
", ",cells |
R6172 |
T9062 |
T9052 |
cc |
and,cells |
R6173 |
T9063 |
T9064 |
compound |
XpdTTD,KO |
R6174 |
T9064 |
T9066 |
compound |
KO,cells |
R6175 |
T9065 |
T9064 |
punct |
/,KO |
R6176 |
T9066 |
T9052 |
conj |
cells,cells |
R6177 |
T9067 |
T9068 |
punct |
(,3 |
R6178 |
T9068 |
T9066 |
parataxis |
3,cells |
R6179 |
T9069 |
T9068 |
punct |
),3 |
R6180 |
T9070 |
T9066 |
prep |
with,cells |
R6181 |
T9071 |
T9072 |
det |
no,beads |
R6182 |
T9072 |
T9070 |
pobj |
beads,with |
R6183 |
T9073 |
T9036 |
punct |
;,cells |
R6184 |
T9074 |
T9075 |
punct |
(,II |
R6185 |
T9075 |
T9076 |
meta |
II,cells |
R6186 |
T9076 |
T9036 |
conj |
cells,cells |
R6187 |
T9077 |
T9075 |
punct |
),II |
R6188 |
T9078 |
T9076 |
compound |
wt,cells |
R6189 |
T9079 |
T9080 |
punct |
(,1 |
R6190 |
T9080 |
T9076 |
parataxis |
1,cells |
R6191 |
T9081 |
T9080 |
punct |
),1 |
R6192 |
T9082 |
T9076 |
acl |
labelled,cells |
R6193 |
T9083 |
T9082 |
prep |
with,labelled |
R6194 |
T9084 |
T9085 |
nummod |
0.79,μm |
R6195 |
T9085 |
T9087 |
compound |
μm,beads |
R6196 |
T9086 |
T9085 |
punct |
-,μm |
R6197 |
T9087 |
T9083 |
pobj |
beads,with |
R6198 |
T9088 |
T9076 |
cc |
and,cells |
R6199 |
T9089 |
T9090 |
compound |
XpdTTD,†XPCS |
R6200 |
T9090 |
T9092 |
compound |
†XPCS,cells |
R6201 |
T9091 |
T9090 |
punct |
/,†XPCS |
R6202 |
T9092 |
T9076 |
conj |
cells,cells |
R6203 |
T9093 |
T9094 |
punct |
(,4 |
R6204 |
T9094 |
T9092 |
parataxis |
4,cells |
R6205 |
T9095 |
T9094 |
punct |
),4 |
R6206 |
T9096 |
T9092 |
prep |
with,cells |
R6207 |
T9097 |
T9098 |
det |
no,beads |
R6208 |
T9098 |
T9096 |
pobj |
beads,with |
R6209 |
T9099 |
T9076 |
punct |
;,cells |
R6210 |
T9100 |
T9076 |
cc |
and,cells |
R6211 |
T9101 |
T9102 |
punct |
(,III |
R6212 |
T9102 |
T9103 |
meta |
III,cells |
R6213 |
T9103 |
T9076 |
conj |
cells,cells |
R6214 |
T9104 |
T9102 |
punct |
),III |
R6215 |
T9105 |
T9103 |
compound |
wt,cells |
R6216 |
T9106 |
T9107 |
punct |
(,1 |
R6217 |
T9107 |
T9103 |
parataxis |
1,cells |
R6218 |
T9108 |
T9107 |
punct |
),1 |
R6219 |
T9109 |
T9103 |
acl |
labelled,cells |
R6220 |
T9110 |
T9109 |
prep |
with,labelled |
R6221 |
T9111 |
T9112 |
nummod |
0.79,μm |
R6222 |
T9112 |
T9114 |
compound |
μm,beads |
R6223 |
T9113 |
T9112 |
punct |
-,μm |
R6224 |
T9114 |
T9110 |
pobj |
beads,with |
R6225 |
T9115 |
T9103 |
cc |
and,cells |
R6226 |
T9116 |
T9117 |
compound |
XpdTTD,†XP |
R6227 |
T9117 |
T9119 |
compound |
†XP,cells |
R6228 |
T9118 |
T9117 |
punct |
/,†XP |
R6229 |
T9119 |
T9103 |
conj |
cells,cells |
R6230 |
T9120 |
T9121 |
punct |
(,5 |
R6231 |
T9121 |
T9119 |
parataxis |
5,cells |
R6232 |
T9122 |
T9121 |
punct |
),5 |
R6233 |
T9123 |
T9119 |
prep |
with,cells |
R6234 |
T9124 |
T9125 |
det |
no,beads |
R6235 |
T9125 |
T9123 |
pobj |
beads,with |
R6236 |
T9126 |
T9027 |
punct |
.,lines |
R6237 |
T9128 |
T9129 |
punct |
(,F |
R6238 |
T9129 |
T9130 |
meta |
F,Quantification |
R6239 |
T9131 |
T9129 |
punct |
),F |
R6240 |
T9132 |
T9130 |
prep |
of,Quantification |
R6241 |
T9133 |
T9134 |
amod |
immunofluorescent,signal |
R6242 |
T9134 |
T9132 |
pobj |
signal,of |
R6243 |
T9135 |
T9134 |
prep |
from,signal |
R6244 |
T9136 |
T9137 |
advmod |
at,50 |
R6245 |
T9137 |
T9139 |
nummod |
50,nuclei |
R6246 |
T9138 |
T9137 |
advmod |
least,50 |
R6247 |
T9139 |
T9135 |
pobj |
nuclei,from |
R6248 |
T9140 |
T9139 |
prep |
per,nuclei |
R6249 |
T9141 |
T9142 |
compound |
cell,line |
R6250 |
T9142 |
T9140 |
pobj |
line,per |
R6251 |
T9143 |
T9139 |
cc |
and,nuclei |
R6252 |
T9144 |
T9145 |
quantmod |
2,6 |
R6253 |
T9145 |
T9147 |
nummod |
6,experiments |
R6254 |
T9146 |
T9145 |
punct |
–,6 |
R6255 |
T9147 |
T9139 |
conj |
experiments,nuclei |
R6256 |
T9148 |
T9147 |
prep |
per,experiments |
R6257 |
T9149 |
T9148 |
pobj |
genotype,per |
R6258 |
T9150 |
T9130 |
punct |
.,Quantification |
R6259 |
T9152 |
T9153 |
nsubjpass |
Bars,depicted |
R6260 |
T9154 |
T9152 |
acl |
representing,Bars |
R6261 |
T9155 |
T9154 |
dobj |
cells,representing |
R6262 |
T9156 |
T9155 |
acl |
analysed,cells |
R6263 |
T9157 |
T9156 |
prep |
on,analysed |
R6264 |
T9158 |
T9159 |
det |
the,slide |
R6265 |
T9159 |
T9157 |
pobj |
slide,on |
R6266 |
T9160 |
T9159 |
amod |
same,slide |
R6267 |
T9161 |
T9159 |
amod |
microscopic,slide |
R6268 |
T9162 |
T9153 |
auxpass |
are,depicted |
R6269 |
T9163 |
T9153 |
npadvmod |
side,depicted |
R6270 |
T9164 |
T9163 |
prep |
by,side |
R6271 |
T9165 |
T9164 |
pobj |
side,by |
R6272 |
T9166 |
T9153 |
punct |
", ",depicted |
R6273 |
T9167 |
T9153 |
prep |
with,depicted |
R6274 |
T9168 |
T9167 |
pobj |
wt,with |
R6275 |
T9169 |
T9168 |
acl |
set,wt |
R6276 |
T9170 |
T9169 |
prep |
at,set |
R6277 |
T9171 |
T9172 |
nummod |
100,% |
R6278 |
T9172 |
T9170 |
pobj |
%,at |
R6279 |
T9173 |
T9153 |
punct |
.,depicted |
R6280 |
T9175 |
T9176 |
det |
The,value |
R6281 |
T9176 |
T9179 |
nsubj |
value,indicates |
R6282 |
T9177 |
T9176 |
compound |
p,value |
R6283 |
T9178 |
T9176 |
punct |
-,value |
R6284 |
T9180 |
T9181 |
amod |
minimum,difference |
R6285 |
T9181 |
T9179 |
dobj |
difference,indicates |
R6286 |
T9182 |
T9181 |
amod |
significant,difference |
R6287 |
T9183 |
T9181 |
prep |
between,difference |
R6288 |
T9184 |
T9183 |
pobj |
wt,between |
R6289 |
T9185 |
T9184 |
cc |
and,wt |
R6290 |
T9186 |
T9187 |
det |
the,lines |
R6291 |
T9187 |
T9184 |
conj |
lines,wt |
R6292 |
T9188 |
T9187 |
amod |
indicated,lines |
R6293 |
T9189 |
T9187 |
compound |
cell,lines |
R6294 |
T9190 |
T9187 |
acl |
analysed,lines |
R6295 |
T9191 |
T9190 |
prep |
on,analysed |
R6296 |
T9192 |
T9193 |
det |
the,slide |
R6297 |
T9193 |
T9191 |
pobj |
slide,on |
R6298 |
T9194 |
T9193 |
amod |
same,slide |
R6299 |
T9195 |
T9193 |
amod |
microscopic,slide |
R6300 |
T9196 |
T9181 |
prep |
within,difference |
R6301 |
T9197 |
T9198 |
nummod |
one,experiment |
R6302 |
T9198 |
T9196 |
pobj |
experiment,within |
R6303 |
T9199 |
T9179 |
punct |
.,indicates |
R6304 |
T9212 |
T9211 |
prep |
of,Frequency |
R6305 |
T9213 |
T9214 |
compound |
Xpd†XP,†XP |
R6306 |
T9214 |
T9212 |
pobj |
†XP,of |
R6307 |
T9215 |
T9214 |
punct |
/,†XP |
R6308 |
T9216 |
T9214 |
punct |
", ",†XP |
R6309 |
T9217 |
T9218 |
compound |
Xpd†XPCS,†XPCS |
R6310 |
T9218 |
T9214 |
conj |
†XPCS,†XP |
R6311 |
T9219 |
T9218 |
punct |
/,†XPCS |
R6312 |
T9220 |
T9218 |
punct |
", ",†XPCS |
R6313 |
T9221 |
T9218 |
cc |
and,†XPCS |
R6314 |
T9222 |
T9223 |
nmod |
Compound,†XPCS |
R6315 |
T9223 |
T9218 |
conj |
†XPCS,†XPCS |
R6316 |
T9224 |
T9223 |
amod |
Heterozygous,†XPCS |
R6317 |
T9225 |
T9223 |
compound |
Xpd†XP,†XPCS |
R6318 |
T9226 |
T9223 |
punct |
/,†XPCS |
R6319 |
T9227 |
T9214 |
appos |
Embryos,†XP |
R6320 |
T9228 |
T9227 |
cc |
and,Embryos |
R6321 |
T9229 |
T9227 |
conj |
Offspring,Embryos |
R6322 |
T9241 |
T9242 |
amod |
Pleiotropic,Effects |
R6323 |
T9243 |
T9242 |
nmod |
Xpd,Effects |
R6324 |
T9244 |
T9242 |
amod |
Biallelic,Effects |
R6325 |
T9245 |
T9242 |
prep |
in,Effects |
R6326 |
T9246 |
T9245 |
pobj |
Mice,in |
R6327 |
T9247 |
T9246 |
cc |
and,Mice |
R6328 |
T9248 |
T9246 |
conj |
Cells,Mice |
R6329 |
T9280 |
T9281 |
compound |
Genotype,Phenotype |
R6330 |
T9281 |
T9283 |
compound |
Phenotype,Relationships |
R6331 |
T9282 |
T9281 |
punct |
–,Phenotype |
R6332 |
T9284 |
T9283 |
prep |
in,Relationships |
R6333 |
T9285 |
T9286 |
compound |
XPD,Disorders |
R6334 |
T9286 |
T9284 |
pobj |
Disorders,in |
R6335 |
T9288 |
T9289 |
prep |
According,determined |
R6336 |
T9290 |
T9288 |
prep |
to,According |
R6337 |
T9291 |
T9292 |
det |
the,hypothesis |
R6338 |
T9292 |
T9290 |
pobj |
hypothesis,to |
R6339 |
T9293 |
T9292 |
amod |
current,hypothesis |
R6340 |
T9294 |
T9292 |
amod |
monoallelic,hypothesis |
R6341 |
T9295 |
T9289 |
punct |
", ",determined |
R6342 |
T9296 |
T9289 |
nsubjpass |
phenotype,determined |
R6343 |
T9297 |
T9289 |
auxpass |
is,determined |
R6344 |
T9298 |
T9299 |
advmod |
solely,by |
R6345 |
T9299 |
T9289 |
agent |
by,determined |
R6346 |
T9300 |
T9301 |
det |
the,product |
R6347 |
T9301 |
T9299 |
pobj |
product,by |
R6348 |
T9302 |
T9301 |
amod |
causative,product |
R6349 |
T9303 |
T9301 |
compound |
allele,product |
R6350 |
T9304 |
T9289 |
punct |
.,determined |
R6351 |
T9306 |
T9307 |
mark |
If,is |
R6352 |
T9307 |
T9313 |
advcl |
is,considered |
R6353 |
T9308 |
T9309 |
det |
a,allele |
R6354 |
T9309 |
T9307 |
nsubj |
allele,is |
R6355 |
T9310 |
T9309 |
amod |
second,allele |
R6356 |
T9311 |
T9309 |
punct |
", ",allele |
R6357 |
T9312 |
T9309 |
amod |
different,allele |
R6358 |
T9314 |
T9307 |
acomp |
present,is |
R6359 |
T9315 |
T9313 |
punct |
", ",considered |
R6360 |
T9316 |
T9313 |
nsubjpass |
it,considered |
R6361 |
T9317 |
T9313 |
auxpass |
is,considered |
R6362 |
T9318 |
T9319 |
det |
a,null |
R6363 |
T9319 |
T9313 |
oprd |
null,considered |
R6364 |
T9320 |
T9319 |
amod |
functional,null |
R6365 |
T9321 |
T9313 |
punct |
.,considered |
R6366 |
T9323 |
T9324 |
expl |
There,is |
R6367 |
T9325 |
T9326 |
det |
a,lack |
R6368 |
T9326 |
T9324 |
attr |
lack,is |
R6369 |
T9327 |
T9326 |
prep |
of,lack |
R6370 |
T9328 |
T9329 |
det |
any,correlation |
R6371 |
T9329 |
T9327 |
pobj |
correlation,of |
R6372 |
T9330 |
T9329 |
prep |
between,correlation |
R6373 |
T9331 |
T9332 |
det |
the,site |
R6374 |
T9332 |
T9330 |
pobj |
site,between |
R6375 |
T9333 |
T9332 |
prep |
of,site |
R6376 |
T9334 |
T9335 |
det |
the,mutation |
R6377 |
T9335 |
T9333 |
pobj |
mutation,of |
R6378 |
T9336 |
T9335 |
compound |
XPD,mutation |
R6379 |
T9337 |
T9332 |
cc |
and,site |
R6380 |
T9338 |
T9339 |
det |
the,disorder |
R6381 |
T9339 |
T9332 |
conj |
disorder,site |
R6382 |
T9340 |
T9339 |
amod |
resulting,disorder |
R6383 |
T9341 |
T9324 |
punct |
.,is |
R6384 |
T9343 |
T9344 |
nsubj |
We,propose |
R6385 |
T9345 |
T9346 |
det |
a,hypothesis |
R6386 |
T9346 |
T9344 |
dobj |
hypothesis,propose |
R6387 |
T9347 |
T9346 |
amod |
biallelic,hypothesis |
R6388 |
T9348 |
T9346 |
prep |
for,hypothesis |
R6389 |
T9349 |
T9350 |
compound |
compound,heterozygotes |
R6390 |
T9350 |
T9348 |
pobj |
heterozygotes,for |
R6391 |
T9351 |
T9352 |
prep |
in,contribute |
R6392 |
T9352 |
T9346 |
relcl |
contribute,hypothesis |
R6393 |
T9353 |
T9351 |
pobj |
which,in |
R6394 |
T9354 |
T9355 |
det |
both,alleles |
R6395 |
T9355 |
T9352 |
nsubj |
alleles,contribute |
R6396 |
T9356 |
T9352 |
aux |
can,contribute |
R6397 |
T9357 |
T9352 |
prep |
to,contribute |
R6398 |
T9358 |
T9359 |
det |
the,phenotype |
R6399 |
T9359 |
T9357 |
pobj |
phenotype,to |
R6400 |
T9360 |
T9344 |
punct |
.,propose |
R6401 |
T9362 |
T9363 |
nsubjpass |
Examples,provided |
R6402 |
T9364 |
T9362 |
prep |
of,Examples |
R6403 |
T9365 |
T9366 |
nmod |
compound,patients |
R6404 |
T9366 |
T9364 |
pobj |
patients,of |
R6405 |
T9367 |
T9366 |
amod |
heterozygous,patients |
R6406 |
T9368 |
T9369 |
prep |
in,is |
R6407 |
T9369 |
T9366 |
relcl |
is,patients |
R6408 |
T9370 |
T9368 |
pobj |
which,in |
R6409 |
T9371 |
T9372 |
det |
a,allele |
R6410 |
T9372 |
T9369 |
nsubj |
allele,is |
R6411 |
T9373 |
T9372 |
amod |
second,allele |
R6412 |
T9374 |
T9372 |
punct |
", ",allele |
R6413 |
T9375 |
T9376 |
amod |
presumed,null |
R6414 |
T9376 |
T9372 |
amod |
null,allele |
R6415 |
T9377 |
T9369 |
acomp |
likely,is |
R6416 |
T9378 |
T9379 |
aux |
to,contribute |
R6417 |
T9379 |
T9377 |
xcomp |
contribute,likely |
R6418 |
T9380 |
T9379 |
prep |
to,contribute |
R6419 |
T9381 |
T9382 |
compound |
disease,outcome |
R6420 |
T9382 |
T9380 |
pobj |
outcome,to |
R6421 |
T9383 |
T9363 |
auxpass |
are,provided |
R6422 |
T9384 |
T9363 |
advmod |
above,provided |
R6423 |
T9385 |
T9363 |
prep |
in,provided |
R6424 |
T9386 |
T9385 |
pobj |
comparison,in |
R6425 |
T9387 |
T9386 |
prep |
to,comparison |
R6426 |
T9388 |
T9389 |
amod |
corresponding,patients |
R6427 |
T9389 |
T9387 |
pobj |
patients,to |
R6428 |
T9390 |
T9391 |
advmod |
homo,hemizygous |
R6429 |
T9391 |
T9389 |
amod |
hemizygous,patients |
R6430 |
T9392 |
T9391 |
punct |
-,hemizygous |
R6431 |
T9393 |
T9391 |
cc |
or,hemizygous |
R6432 |
T9394 |
T9389 |
prep |
with,patients |
R6433 |
T9395 |
T9396 |
det |
the,allele |
R6434 |
T9396 |
T9394 |
pobj |
allele,with |
R6435 |
T9397 |
T9396 |
amod |
same,allele |
R6436 |
T9398 |
T9396 |
amod |
causative,allele |
R6437 |
T9399 |
T9363 |
punct |
.,provided |
R6438 |
T9401 |
T9402 |
nsubj |
Numbers,indicate |
R6439 |
T9403 |
T9401 |
prep |
in,Numbers |
R6440 |
T9404 |
T9405 |
det |
the,schematic |
R6441 |
T9405 |
T9403 |
pobj |
schematic,in |
R6442 |
T9406 |
T9405 |
prep |
of,schematic |
R6443 |
T9407 |
T9408 |
det |
the,protein |
R6444 |
T9408 |
T9406 |
pobj |
protein,of |
R6445 |
T9409 |
T9410 |
det |
the,domains |
R6446 |
T9410 |
T9402 |
dobj |
domains,indicate |
R6447 |
T9411 |
T9410 |
compound |
helicase,domains |
R6448 |
T9412 |
T9402 |
punct |
.,indicate |
R34 |
T121 |
T122 |
poss |
its,potential |
R1 |
T86 |
T84 |
prep |
of,Rescue |
R2 |
T87 |
T86 |
pobj |
Progeria,of |
R3 |
T88 |
T84 |
prep |
in,Rescue |
R4 |
T89 |
T88 |
pobj |
Trichothiodystrophy,in |
R5 |
T90 |
T84 |
prep |
by,Rescue |
R6 |
T91 |
T92 |
amod |
Homozygous,Alleles |
R10 |
T96 |
T97 |
mark |
Although,is |
R25 |
T111 |
T109 |
pobj |
gene,of |
R28 |
T115 |
T97 |
acomp |
common,is |
R29 |
T116 |
T97 |
prep |
in,is |
R30 |
T117 |
T118 |
amod |
human,disease |
R33 |
T120 |
T114 |
punct |
", ",documented |
R35 |
T122 |
T114 |
nsubjpass |
potential,documented |
R36 |
T123 |
T124 |
aux |
to,impact |
R37 |
T124 |
T122 |
acl |
impact,potential |
R38 |
T125 |
T126 |
compound |
disease,outcome |
R39 |
T126 |
T124 |
dobj |
outcome,impact |
R40 |
T127 |
T114 |
aux |
has,documented |
R41 |
T128 |
T114 |
neg |
not,documented |
R42 |
T129 |
T114 |
auxpass |
been,documented |
R43 |
T130 |
T114 |
advmod |
well,documented |
R44 |
T131 |
T114 |
punct |
.,documented |
R45 |
T133 |
T134 |
nsubj |
This,is |
R46 |
T135 |
T136 |
advmod |
most,likely |
R47 |
T136 |
T137 |
advmod |
likely,because |
R48 |
T137 |
T134 |
prep |
because,is |
R49 |
T138 |
T137 |
pcomp |
of,because |
R50 |
T139 |
T140 |
det |
the,difficulty |
R53 |
T142 |
T140 |
prep |
in,difficulty |
R54 |
T143 |
T142 |
pcomp |
distinguishing,in |
R55 |
T144 |
T145 |
amod |
specific,effects |
R58 |
T147 |
T143 |
prep |
from,distinguishing |
R59 |
T148 |
T147 |
pobj |
differences,from |
R60 |
T149 |
T148 |
prep |
in,differences |
R61 |
T150 |
T149 |
pobj |
environment,in |
R62 |
T151 |
T150 |
cc |
or,environment |
R63 |
T152 |
T153 |
amod |
genetic,background |
R64 |
T153 |
T150 |
conj |
background,environment |
R65 |
T154 |
T134 |
punct |
.,is |
R66 |
T156 |
T157 |
nsubj |
We,addressed |
R67 |
T158 |
T159 |
det |
the,potential |
R68 |
T159 |
T157 |
dobj |
potential,addressed |
R69 |
T160 |
T159 |
prep |
of,potential |
R70 |
T161 |
T162 |
amod |
different,alleles |
R73 |
T164 |
T165 |
aux |
to,contribute |
R74 |
T165 |
T159 |
acl |
contribute,potential |
R75 |
T166 |
T165 |
prep |
to,contribute |
R76 |
T167 |
T168 |
det |
the,pleiotropy |
R79 |
T170 |
T168 |
acl |
associated,pleiotropy |
R80 |
T171 |
T170 |
prep |
with,associated |
R81 |
T172 |
T173 |
nmod |
XPD,disorders |
R84 |
T175 |
T170 |
prep |
in,associated |
R85 |
T176 |
T177 |
nmod |
compound,models |
R89 |
T180 |
T157 |
punct |
.,addressed |
R90 |
T182 |
T183 |
nsubj |
Alterations,result |
R91 |
T184 |
T182 |
prep |
in,Alterations |
R92 |
T185 |
T186 |
det |
this,helicase |
R95 |
T188 |
T186 |
punct |
", ",helicase |
R96 |
T189 |
T186 |
prep |
with,helicase |
R97 |
T190 |
T189 |
pobj |
functions,with |
R98 |
T191 |
T190 |
prep |
in,functions |
R99 |
T192 |
T193 |
preconj |
both,repair |
R102 |
T195 |
T193 |
cc |
and,repair |
R103 |
T196 |
T197 |
amod |
basal,transcription |
R104 |
T197 |
T193 |
conj |
transcription,repair |
R105 |
T198 |
T183 |
punct |
", ",result |
R106 |
T199 |
T183 |
prep |
in,result |
R107 |
T200 |
T201 |
amod |
diverse,pathologies |
R108 |
T201 |
T199 |
pobj |
pathologies,in |
R109 |
T202 |
T201 |
acl |
ranging,pathologies |
R110 |
T203 |
T202 |
prep |
from,ranging |
R111 |
T204 |
T205 |
amod |
elevated,sensitivity |
R114 |
T207 |
T205 |
cc |
and,sensitivity |
R115 |
T208 |
T209 |
compound |
cancer,predisposition |
R116 |
T209 |
T205 |
conj |
predisposition,sensitivity |
R117 |
T210 |
T203 |
prep |
to,from |
R118 |
T211 |
T212 |
amod |
accelerated,progeria |
R121 |
T214 |
T183 |
punct |
.,result |
R122 |
T216 |
T217 |
nsubj |
We,report |
R123 |
T218 |
T219 |
det |
a,variety |
R124 |
T219 |
T217 |
dobj |
variety,report |
R125 |
T220 |
T219 |
prep |
of,variety |
R126 |
T221 |
T222 |
amod |
biallelic,effects |
R127 |
T222 |
T220 |
pobj |
effects,of |
R128 |
T223 |
T222 |
prep |
on,effects |
R129 |
T224 |
T225 |
amod |
organismal,phenotype |
R130 |
T225 |
T223 |
pobj |
phenotype,on |
R131 |
T226 |
T222 |
amod |
attributable,effects |
R132 |
T227 |
T226 |
prep |
to,attributable |
R133 |
T228 |
T227 |
pobj |
combinations,to |
R134 |
T229 |
T228 |
prep |
of,combinations |
R135 |
T230 |
T231 |
amod |
recessive,alleles |
R138 |
T233 |
T219 |
punct |
", ",variety |
R139 |
T234 |
T219 |
prep |
including,variety |
R140 |
T235 |
T236 |
det |
the,following |
R141 |
T236 |
T234 |
pobj |
following,including |
R142 |
T237 |
T236 |
punct |
: ,following |
R143 |
T238 |
T239 |
punct |
(,i |
R144 |
T239 |
T240 |
meta |
i,ability |
R148 |
T243 |
T240 |
prep |
of,ability |
R149 |
T244 |
T245 |
amod |
homozygous,alleles |
R153 |
T248 |
T249 |
aux |
to,ameliorate |
R154 |
T249 |
T240 |
acl |
ameliorate,ability |
R155 |
T250 |
T251 |
det |
a,variety |
R156 |
T251 |
T249 |
dobj |
variety,ameliorate |
R157 |
T252 |
T251 |
prep |
of,variety |
R158 |
T253 |
T254 |
compound |
disease,symptoms |
R159 |
T254 |
T252 |
pobj |
symptoms,of |
R160 |
T255 |
T256 |
advmod |
when,supplied |
R168 |
T263 |
T256 |
agent |
by,supplied |
R169 |
T264 |
T265 |
det |
a,allele |
R173 |
T268 |
T265 |
amod |
causing,allele |
R175 |
T270 |
T240 |
punct |
", ",ability |
R176 |
T271 |
T272 |
punct |
(,ii |
R177 |
T272 |
T273 |
meta |
ii,functions |
R184 |
T279 |
T276 |
conj |
specific,developmental |
R186 |
T281 |
T273 |
prep |
of,functions |
R187 |
T282 |
T283 |
amod |
distinct,products |
R191 |
T286 |
T273 |
punct |
", ",functions |
R192 |
T287 |
T273 |
cc |
and,functions |
R193 |
T288 |
T289 |
punct |
(,iii |
R194 |
T289 |
T290 |
meta |
iii,complementation |
R198 |
T293 |
T290 |
punct |
", ",complementation |
R199 |
T294 |
T295 |
det |
a,phenomenon |
R200 |
T295 |
T290 |
appos |
phenomenon,complementation |
R201 |
T296 |
T297 |
advmod |
rarely,reported |
R202 |
T297 |
T295 |
acl |
reported,phenomenon |
R203 |
T298 |
T297 |
prep |
at,reported |
R204 |
T299 |
T300 |
advmod |
clinically,relevant |
R205 |
T300 |
T301 |
amod |
relevant,loci |
R206 |
T301 |
T298 |
pobj |
loci,at |
R207 |
T302 |
T301 |
prep |
in,loci |
R208 |
T303 |
T302 |
pobj |
mammals,in |
R209 |
T304 |
T217 |
punct |
.,report |
R210 |
T306 |
T307 |
poss |
Our,data |
R211 |
T307 |
T308 |
nsubj |
data,suggest |
R212 |
T309 |
T310 |
det |
a,re-evaluation |
R213 |
T310 |
T308 |
dobj |
re-evaluation,suggest |
R214 |
T311 |
T310 |
prep |
of,re-evaluation |
R215 |
T312 |
T313 |
det |
the,contribution |
R216 |
T313 |
T311 |
pobj |
contribution,of |
R217 |
T314 |
T313 |
prep |
of,contribution |
R218 |
T315 |
T314 |
punct |
“,of |
R219 |
T316 |
T317 |
amod |
null,alleles |
R222 |
T319 |
T313 |
prep |
to,contribution |
R223 |
T320 |
T321 |
compound |
XPD,disorders |
R224 |
T321 |
T319 |
pobj |
disorders,to |
R225 |
T322 |
T308 |
cc |
and,suggest |
R226 |
T323 |
T308 |
conj |
highlight,suggest |
R227 |
T324 |
T325 |
det |
the,potential |
R228 |
T325 |
T323 |
dobj |
potential,highlight |
R229 |
T326 |
T325 |
prep |
of,potential |
R230 |
T327 |
T326 |
pobj |
combinations,of |
R231 |
T328 |
T327 |
prep |
of,combinations |
R232 |
T329 |
T330 |
amod |
recessive,alleles |
R233 |
T330 |
T328 |
pobj |
alleles,of |
R234 |
T331 |
T332 |
aux |
to,affect |
R235 |
T332 |
T325 |
acl |
affect,potential |
R236 |
T333 |
T334 |
preconj |
both,plasticity |
R242 |
T339 |
T332 |
prep |
in,affect |
R243 |
T340 |
T339 |
pobj |
mammals,in |
R244 |
T341 |
T308 |
punct |
.,suggest |
R912 |
T1403 |
T1401 |
pobj |
Heterozygotes,of |
R923 |
T1416 |
T1414 |
pobj |
mutation,with |
R937 |
T1430 |
T1428 |
pobj |
patient,in |
R941 |
T1434 |
T1407 |
parataxis |
1A,generated |
R951 |
T1446 |
T1444 |
pobj |
allele,from |
R957 |
T1452 |
T1450 |
pobj |
cells,in |
R961 |
T1456 |
T1454 |
pobj |
PCR,by |
R964 |
T1459 |
T1443 |
parataxis |
1D,detected |
R996 |
T1491 |
T1443 |
parataxis |
1E,detected |
R1008 |
T1505 |
T1503 |
pobj |
protein,with |
R1016 |
T1513 |
T1511 |
pobj |
allele,from |
R1020 |
T1517 |
T1500 |
nsubjpass |
mutation,expected |
R1028 |
T1525 |
T1523 |
pobj |
state,in |
R1034 |
T1533 |
T1530 |
nsubjpass |
mice,observed |
R1077 |
T1580 |
T1578 |
pobj |
allele,of |
R1088 |
T1591 |
T1589 |
pobj |
protein,of |
R1097 |
T1600 |
T1598 |
parataxis |
1A,targeting |
R1120 |
T1625 |
T1623 |
pobj |
stages,beyond |
R1142 |
T1649 |
T1646 |
relcl |
associated,XPDR683W |
R1148 |
T1655 |
T1653 |
pobj |
state,in |
R1159 |
T1666 |
T1664 |
pobj |
state,in |
R1168 |
T1675 |
T1635 |
parataxis |
1A,was |
R1200 |
T1709 |
T1707 |
pobj |
gene,of |
R1206 |
T1715 |
T1713 |
pobj |
levels,of |
R1216 |
T1725 |
T1722 |
parataxis |
G602D,XPCS |
R1860 |
T2739 |
T2733 |
ccomp |
rescued,revealed |
R1861 |
T2740 |
T2741 |
npadvmod |
TTD,associated |
R1862 |
T2741 |
T2743 |
amod |
associated,cachexia |
R1863 |
T2742 |
T2741 |
punct |
-,associated |
R1864 |
T2743 |
T2739 |
nsubjpass |
cachexia,rescued |
R1865 |
T2744 |
T2745 |
npadvmod |
age,related |
R1866 |
T2745 |
T2743 |
amod |
related,cachexia |
R1867 |
T2746 |
T2745 |
punct |
-,related |
R1868 |
T2747 |
T2743 |
amod |
premature,cachexia |
R1869 |
T2748 |
T2743 |
cc |
and,cachexia |
R1870 |
T2749 |
T2743 |
conj |
lack,cachexia |
R1871 |
T2750 |
T2749 |
prep |
of,lack |
R1872 |
T2751 |
T2752 |
amod |
general,fitness |
R1873 |
T2752 |
T2750 |
pobj |
fitness,of |
R1874 |
T2753 |
T2739 |
auxpass |
were,rescued |
R1875 |
T2754 |
T2739 |
advmod |
fully,rescued |
R1876 |
T2755 |
T2739 |
prep |
in,rescued |
R1877 |
T2756 |
T2757 |
amod |
compound,mice |
R1878 |
T2757 |
T2755 |
pobj |
mice,in |
R1879 |
T2758 |
T2757 |
amod |
heterozygous,mice |
R1880 |
T2759 |
T2760 |
compound |
XpdTTD,†XPCS |
R1881 |
T2760 |
T2757 |
compound |
†XPCS,mice |
R1882 |
T2761 |
T2760 |
punct |
/,†XPCS |
R1883 |
T2762 |
T2763 |
punct |
(,3A |
R1884 |
T2763 |
T2733 |
parataxis |
3A,revealed |
R1885 |
T2764 |
T2763 |
compound |
Figure,3A |
R1886 |
T2765 |
T2763 |
cc |
and,3A |
R1887 |
T2766 |
T2763 |
conj |
3D,3A |
R1888 |
T2767 |
T2763 |
punct |
),3A |
R1889 |
T2768 |
T2733 |
punct |
.,revealed |
R1890 |
T2770 |
T2771 |
advmod |
Finally,extended |
R1910 |
T2792 |
T2793 |
aux |
To,determine |
R1911 |
T2793 |
T2794 |
advcl |
determine,generated |
R1912 |
T2795 |
T2796 |
mark |
whether,was |
R1913 |
T2796 |
T2793 |
ccomp |
was,determine |
R1914 |
T2797 |
T2798 |
det |
the,allele |
R1915 |
T2798 |
T2796 |
nsubj |
allele,was |
R1916 |
T2799 |
T2798 |
amod |
homozygous,allele |
R1917 |
T2800 |
T2798 |
amod |
lethal,allele |
R1918 |
T2801 |
T2798 |
compound |
Xpd†XPCS,allele |
R1919 |
T2802 |
T2796 |
acomp |
unique,was |
R1920 |
T2803 |
T2802 |
prep |
in,unique |
R1921 |
T2804 |
T2805 |
poss |
its,ability |
R1922 |
T2805 |
T2803 |
pobj |
ability,in |
R1556 |
T2301 |
T2299 |
pobj |
level,below |
R1558 |
T2303 |
T2304 |
punct |
(,2C |
R1559 |
T2304 |
T2274 |
parataxis |
2C,confirmed |
R1560 |
T2305 |
T2304 |
compound |
Figure,2C |
R1561 |
T2306 |
T2304 |
punct |
),2C |
R1562 |
T2307 |
T2274 |
punct |
.,confirmed |
R1563 |
T2309 |
T2310 |
compound |
TTD,hemizygotes |
R1564 |
T2310 |
T2311 |
nsubj |
hemizygotes,display |
R1565 |
T2312 |
T2313 |
punct |
(,KO |
R1566 |
T2313 |
T2310 |
parataxis |
KO,hemizygotes |
R1567 |
T2314 |
T2313 |
compound |
XpdTTD,KO |
R1568 |
T2315 |
T2313 |
punct |
/,KO |
R1569 |
T2316 |
T2313 |
punct |
),KO |
R1570 |
T2317 |
T2311 |
aux |
do,display |
R1571 |
T2318 |
T2311 |
neg |
not,display |
R1572 |
T2319 |
T2320 |
amod |
significant,differences |
R1573 |
T2320 |
T2311 |
dobj |
differences,display |
R1574 |
T2321 |
T2320 |
prep |
in,differences |
R1575 |
T2322 |
T2323 |
amod |
cutaneous,features |
R1576 |
T2323 |
T2321 |
pobj |
features,in |
R1577 |
T2324 |
T2323 |
cc |
and,features |
R1578 |
T2325 |
T2323 |
conj |
longevity,features |
R1579 |
T2326 |
T2320 |
amod |
relative,differences |
R1580 |
T2327 |
T2326 |
prep |
to,relative |
R1581 |
T2328 |
T2329 |
amod |
homozygous,mice |
R1582 |
T2329 |
T2327 |
pobj |
mice,to |
R1583 |
T2330 |
T2331 |
compound |
XpdTTD,TTD |
R1584 |
T2331 |
T2329 |
compound |
TTD,mice |
R1585 |
T2332 |
T2331 |
punct |
/,TTD |
R1586 |
T2333 |
T2334 |
punct |
[,21 |
R1587 |
T2334 |
T2311 |
parataxis |
21,display |
R1588 |
T2335 |
T2334 |
punct |
],21 |
R1589 |
T2336 |
T2311 |
punct |
.,display |
R1590 |
T2338 |
T2339 |
amod |
Other,features |
R1591 |
T2339 |
T2342 |
nsubj |
features,were |
R1592 |
T2340 |
T2339 |
amod |
prominent,features |
R1593 |
T2341 |
T2339 |
compound |
TTD,features |
R1594 |
T2343 |
T2339 |
prep |
in,features |
R1595 |
T2344 |
T2345 |
det |
the,epidermis |
R1596 |
T2345 |
T2343 |
pobj |
epidermis,in |
R1597 |
T2346 |
T2339 |
punct |
", ",features |
R1598 |
T2347 |
T2339 |
prep |
including,features |
R1599 |
T2348 |
T2347 |
pobj |
acanthosis,including |
R1600 |
T2349 |
T2350 |
punct |
(,thickening |
R1601 |
T2350 |
T2348 |
parataxis |
thickening,acanthosis |
R1602 |
T2351 |
T2350 |
prep |
of,thickening |
R1603 |
T2352 |
T2353 |
det |
the,layer |
R1604 |
T2353 |
T2351 |
pobj |
layer,of |
R1605 |
T2354 |
T2353 |
prep |
of,layer |
R1606 |
T2355 |
T2356 |
det |
the,cells |
R1607 |
T2356 |
T2354 |
pobj |
cells,of |
R1608 |
T2357 |
T2356 |
amod |
nucleated,cells |
R1609 |
T2358 |
T2350 |
punct |
),thickening |
R1610 |
T2359 |
T2348 |
punct |
", ",acanthosis |
R1611 |
T2360 |
T2348 |
conj |
hyperkeratosis,acanthosis |
R1612 |
T2361 |
T2362 |
punct |
(,thickening |
R1613 |
T2362 |
T2360 |
parataxis |
thickening,hyperkeratosis |
R1614 |
T2363 |
T2362 |
amod |
prominent,thickening |
R1615 |
T2364 |
T2362 |
prep |
of,thickening |
R1616 |
T2365 |
T2366 |
det |
the,layer |
R1617 |
T2366 |
T2364 |
pobj |
layer,of |
R1618 |
T2367 |
T2366 |
amod |
cornified,layer |
R1619 |
T2368 |
T2362 |
punct |
),thickening |
R1620 |
T2369 |
T2360 |
punct |
", ",hyperkeratosis |
R1621 |
T2370 |
T2360 |
cc |
and,hyperkeratosis |
R1622 |
T2371 |
T2372 |
amod |
pronounced,layer |
R1623 |
T2372 |
T2360 |
conj |
layer,hyperkeratosis |
R1624 |
T2373 |
T2372 |
amod |
granular,layer |
R262 |
T582 |
T578 |
advcl |
can,function |
R270 |
T592 |
T589 |
pobj |
universality,Despite |
R320 |
T644 |
T646 |
compound |
CoA,carboxylase |
R345 |
T669 |
T662 |
conj |
mutase,uridylyltransferase |
R361 |
T687 |
T685 |
pobj |
gene,of |
R392 |
T720 |
T717 |
pobj |
effects,as |
R398 |
T726 |
T724 |
pobj |
outcomes,in |
R415 |
T745 |
T734 |
dobj |
bias,create |
R430 |
T760 |
T757 |
conj |
effects,complementation |
R485 |
T817 |
T815 |
pobj |
initiation,including |
R489 |
T821 |
T817 |
conj |
repair,initiation |
R512 |
T846 |
T844 |
pobj |
function,in |
R517 |
T851 |
T853 |
amod |
sensitive,disorders |
R553 |
T889 |
T891 |
amod |
induced,anomalies |
R555 |
T891 |
T887 |
pobj |
anomalies,by |
R590 |
T930 |
T928 |
pobj |
hand,on |
R594 |
T934 |
T924 |
attr |
disorders,are |
R649 |
T991 |
T989 |
pobj |
types,in |
R658 |
T1001 |
T1003 |
nsubjpass |
disorder,described |
R662 |
T1006 |
T1004 |
pobj |
predisposition,with |
R669 |
T1013 |
T1011 |
pobj |
complications,with |
R688 |
T1033 |
T1035 |
nsubjpass |
mutations,associated |
R709 |
T1055 |
T1035 |
conj |
viewed,associated |
R715 |
T1061 |
T1059 |
pobj |
syndromes,of |
R753 |
T1103 |
T1101 |
pobj |
mutation,with |
R762 |
T1112 |
T1087 |
conj |
considered,fail |
R767 |
T1117 |
T1115 |
pobj |
activity,of |
R784 |
T1136 |
T1126 |
ccomp |
refer,defines |
R812 |
T1166 |
T1164 |
pobj |
presentation,with |
R856 |
T1212 |
T1210 |
dobj |
syndrome,phenocopies |
R885 |
T1243 |
T1245 |
amod |
associated,ageing |
R2439 |
T3689 |
T3688 |
prep |
of,none |
R2440 |
T3690 |
T3691 |
det |
the,combinations |
R2518 |
T3778 |
T3779 |
nsubj |
sk,e |
R2519 |
T3779 |
T3780 |
ccomp |
e,t |
R2520 |
T3781 |
T3779 |
dobj |
d,e |
R2521 |
T3782 |
T3781 |
prep |
wh,d |
R2522 |
T3783 |
T3780 |
nsubj |
e,t |
R2523 |
T3789 |
T3790 |
det |
h,e |
R2524 |
T3798 |
T3797 |
cc |
and,†XPCS |
R2525 |
T3799 |
T3800 |
compound |
Xpd,†XP |
R2526 |
T3800 |
T3797 |
conj |
†XP,†XPCS |
R2527 |
T3801 |
T3802 |
amod |
a,l |
R2528 |
T3804 |
T3805 |
nsubj |
l,e |
R2529 |
T3806 |
T3805 |
dobj |
les,e |
R2530 |
T3812 |
T3811 |
pobj |
e,it |
R2531 |
T3817 |
T3818 |
amod |
re,a |
R2532 |
T3821 |
T3820 |
cc |
d,e |
R2533 |
T3822 |
T3820 |
conj |
m,e |
R2534 |
T3826 |
T3825 |
compound |
RNA,levels |
R2535 |
T3827 |
T3824 |
punct |
", ",ameliorated |
R2536 |
T3828 |
T3829 |
compound |
TTD,symptoms |
R2537 |
T3829 |
T3824 |
dobj |
symptoms,ameliorated |
R2538 |
T3830 |
T3824 |
prep |
by,ameliorated |
R2539 |
T3831 |
T3832 |
amod |
increasing,levels |
R2540 |
T3832 |
T3830 |
pobj |
levels,by |
R2541 |
T3833 |
T3832 |
amod |
overall,levels |
R2542 |
T3834 |
T3832 |
compound |
TFIIH,levels |
R2543 |
T3835 |
T3824 |
prep |
in,ameliorated |
R2544 |
T3836 |
T3837 |
nmod |
compound,cells |
R2545 |
T3837 |
T3835 |
pobj |
cells,in |
R2546 |
T3838 |
T3837 |
amod |
heterozygous,cells |
R2547 |
T3839 |
T3840 |
nmod |
XpdTTD, †XPCS |
R2548 |
T3840 |
T3837 |
nmod |
†XPCS,cells |
R2549 |
T3841 |
T3840 |
punct |
/, †XPCS |
R2550 |
T3842 |
T3840 |
cc |
and, †XPCS |
R2551 |
T3843 |
T3844 |
compound |
XpdTTD, †XP |
R2552 |
T3844 |
T3840 |
conj |
†XP, †XPCS |
R2553 |
T3845 |
T3844 |
punct |
/, †XP |
R2554 |
T3848 |
T3849 |
advmod |
Previously,shown |
R2555 |
T3850 |
T3849 |
punct |
", ",shown |
R2556 |
T3851 |
T3849 |
advcl |
using,shown |
R2557 |
T3852 |
T3853 |
amod |
comparative,immunohistochemistry |
R2558 |
T3853 |
T3851 |
dobj |
immunohistochemistry,using |
R2559 |
T3854 |
T3849 |
punct |
", ",shown |
R2560 |
T3855 |
T3849 |
nsubj |
we,shown |
R2561 |
T3856 |
T3855 |
cc |
and,we |
R2562 |
T3857 |
T3855 |
conj |
others,we |
R2563 |
T3858 |
T3849 |
aux |
have,shown |
R2564 |
T3859 |
T3860 |
det |
an,reduction |
R2565 |
T3860 |
T3849 |
dobj |
reduction,shown |
R2566 |
T3861 |
T3862 |
quantmod |
up,70 |
R2567 |
T3862 |
T3864 |
nummod |
70,% |
R2568 |
T3863 |
T3862 |
quantmod |
to,70 |
R2569 |
T3864 |
T3860 |
compound |
%,reduction |
R2570 |
T3865 |
T3860 |
prep |
of,reduction |
R2571 |
T3866 |
T3867 |
compound |
TFIIH,levels |
R2812 |
T4119 |
T4120 |
amod |
normal,levels |
R2813 |
T4120 |
T4118 |
pobj |
levels,with |
R2814 |
T4121 |
T4120 |
compound |
expression,levels |
R2815 |
T4122 |
T4120 |
prep |
from,levels |
R2816 |
T4123 |
T4124 |
det |
the,allele |
R2817 |
T4124 |
T4122 |
pobj |
allele,from |
R2818 |
T4125 |
T4124 |
amod |
viable,allele |
R2819 |
T4126 |
T4124 |
compound |
XpdXPCS,allele |
R2820 |
T4127 |
T4128 |
punct |
(,Table |
R2821 |
T4128 |
T4088 |
parataxis |
Table,had |
R2822 |
T4129 |
T4128 |
nummod |
2,Table |
R2823 |
T4130 |
T4128 |
cc |
and,Table |
R2824 |
T4131 |
T4132 |
amod |
unpublished,data |
R2825 |
T4132 |
T4128 |
conj |
data,Table |
R2826 |
T4133 |
T4128 |
punct |
),Table |