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PMC:1564426 / 55629-56424 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T29467 0-8 SO_EXT:genotype_or_entity_with_genotype denotes Genotype
T29468 9-15 UBERON:0000479 denotes tissue
T29469 25-38 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T29470 58-64 SO_EXT:0001023 denotes allele
T29471 94-96 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T29472 102-105 CHEBI_SO_EXT:DNA denotes DNA
T29473 137-144 UBERON:0000479 denotes tissues
T29474 224-227 CHEBI_SO_EXT:RNA denotes RNA
T29475 251-257 UBERON:0000479 denotes tissue
T29476 280-287 CHEBI_EXT:33893 denotes reagent
T29477 306-316 GO:0010467 denotes expression
T29478 320-329 SO_EXT:wild_type_entity_or_quality denotes wild-type
T29479 334-343 SO_EXT:sequence_truncation_process denotes truncated
T29480 344-347 PR_EXT:000004122 denotes Apc
T29481 348-355 SO_EXT:0001023 denotes alleles
T29482 380-382 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T29483 392-400 CHEBI_EXT:platinum denotes Platinum
T29484 521-524 CHEBI_SO_EXT:RNA denotes RNA
T29485 537-541 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T29486 543-548 UBERON:0002107 denotes liver
T29487 553-559 UBERON:0002370 denotes thymus
T29488 570-578 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T29489 583-602 GO:0001171 denotes reverse-transcribed
T29490 609-616 SO_EXT:0000112 denotes primers
T29491 617-620 PR_EXT:000004122 denotes Apc
T29492 654-657 PR_EXT:000004122 denotes Apc
T29493 705-707 SO_EXT:0000028 denotes bp
T29494 716-718 SO_EXT:0000028 denotes bp
T29495 737-746 SO_EXT:wild_type_entity_or_quality denotes wild-type
T29496 747-750 PR_EXT:000004122 denotes Apc
T29497 754-761 SO_EXT:0001023 denotes alleles
T29498 766-769 PR_EXT:000004122 denotes Apc
T29499 774-780 SO_EXT:0001023 denotes allele

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T29445 9-15 UBERON:0000479 denotes tissue
T29446 58-64 SO:0001023 denotes allele
T29447 137-144 UBERON:0000479 denotes tissues
T29448 251-257 UBERON:0000479 denotes tissue
T29449 280-287 CHEBI:33893 denotes reagent
T29450 306-316 GO:0010467 denotes expression
T29451 344-347 PR:000004122 denotes Apc
T29452 348-355 SO:0001023 denotes alleles
T29453 543-548 UBERON:0002107 denotes liver
T29454 553-559 UBERON:0002370 denotes thymus
T29455 583-602 GO:0001171 denotes reverse-transcribed
T29456 609-616 SO:0000112 denotes primers
T29457 617-620 PR:000004122 denotes Apc
T29458 654-657 PR:000004122 denotes Apc
T29459 705-707 SO:0000028 denotes bp
T29460 716-718 SO:0000028 denotes bp
T29461 747-750 PR:000004122 denotes Apc
T29462 754-761 SO:0001023 denotes alleles
T29463 766-769 PR:000004122 denotes Apc
T29464 774-780 SO:0001023 denotes allele

craft-sa-dev

Id Subject Object Predicate Lexical cue
T29508 0-8 NN denotes Genotype
T29509 9-15 NN denotes tissue
T29510 8-9 HYPH denotes /
T29511 16-24 JJ denotes specific
T29512 15-16 HYPH denotes -
T29513 25-38 NN denotes recombination
T29514 69-77 VBN denotes examined
T29515 39-41 IN denotes of
T29516 42-45 DT denotes the
T29517 58-64 NN denotes allele
T29518 46-57 JJ denotes conditional
T29519 65-68 VBD denotes was
T29520 78-80 IN denotes by
T29521 81-85 CC denotes both
T29522 86-89 NN denotes PCR
T29523 90-93 CC denotes and
T29524 94-96 NN denotes RT
T29525 97-100 NN denotes PCR
T29526 96-97 HYPH denotes -
T29527 100-101 . denotes .
T29528 101-223 sentence denotes DNA samples extracted from various tissues collected at the time of autopsy were examined by genotyping PCR as described.
T29529 102-105 NN denotes DNA
T29530 106-113 NNS denotes samples
T29531 183-191 VBN denotes examined
T29532 114-123 VBN denotes extracted
T29533 124-128 IN denotes from
T29534 129-136 JJ denotes various
T29535 137-144 NNS denotes tissues
T29536 145-154 VBN denotes collected
T29537 155-157 IN denotes at
T29538 158-161 DT denotes the
T29539 162-166 NN denotes time
T29540 167-169 IN denotes of
T29541 170-177 NN denotes autopsy
T29542 178-182 VBD denotes were
T29543 192-194 IN denotes by
T29544 195-205 VBG denotes genotyping
T29545 206-209 NN denotes PCR
T29546 210-212 IN denotes as
T29547 213-222 VBN denotes described
T29548 222-223 . denotes .
T29549 223-490 sentence denotes RNA extracted from various tissue homogenates in Trizol reagent were examined for expression of wild-type and truncated Apc alleles by SuperScript One-Step RT-PCR with Platinum Taq (Invitrogen, Carlsbad, California, United States), following manufacturer's protocol.
T29550 224-227 NN denotes RNA
T29551 293-301 VBN denotes examined
T29552 228-237 VBN denotes extracted
T29553 238-242 IN denotes from
T29554 243-250 JJ denotes various
T29555 258-269 NNS denotes homogenates
T29556 251-257 NN denotes tissue
T29557 270-272 IN denotes in
T29558 273-279 NN denotes Trizol
T29559 280-287 NN denotes reagent
T29560 288-292 VBD denotes were
T29561 302-305 IN denotes for
T29562 306-316 NN denotes expression
T29563 317-319 IN denotes of
T29564 320-324 JJ denotes wild
T29565 325-329 NN denotes type
T29566 324-325 HYPH denotes -
T29567 348-355 NNS denotes alleles
T29568 330-333 CC denotes and
T29569 334-343 VBN denotes truncated
T29570 344-347 NN denotes Apc
T29571 356-358 IN denotes by
T29572 359-370 NNP denotes SuperScript
T29573 383-386 NN denotes PCR
T29574 371-374 CD denotes One
T29575 375-379 NNP denotes Step
T29576 374-375 HYPH denotes -
T29577 380-382 NN denotes RT
T29578 382-383 HYPH denotes -
T29579 387-391 IN denotes with
T29580 392-400 NN denotes Platinum
T29581 401-404 NN denotes Taq
T29582 405-406 -LRB- denotes (
T29583 406-416 NNP denotes Invitrogen
T29584 416-418 , denotes ,
T29585 418-426 NNP denotes Carlsbad
T29586 426-428 , denotes ,
T29587 428-438 NNP denotes California
T29588 438-440 , denotes ,
T29589 440-446 NNP denotes United
T29590 447-453 NNP denotes States
T29591 453-454 -RRB- denotes )
T29592 454-456 , denotes ,
T29593 456-465 VBG denotes following
T29594 466-478 NN denotes manufacturer
T29595 481-489 NN denotes protocol
T29596 478-480 POS denotes 's
T29597 489-490 . denotes .
T29598 490-795 sentence denotes Approximately 200 ng of total RNA from either skin, liver, or thymus from each genotype was reverse-transcribed using primers Apc-F546 (TGAGGAATTTGTCTTGGCGAG) and Apc-R721 (GCACTTCCCATGGCAATCATT), resulting in 528-bp and 313-bp products from the wild-type/ApcCKO alleles and ApcΔ580 allele, respectively.
T29599 491-504 RB denotes Approximately
T29600 509-511 NNS denotes ng
T29601 505-508 CD denotes 200
T29602 591-602 VBN denotes transcribed
T29603 512-514 IN denotes of
T29604 515-520 JJ denotes total
T29605 521-524 NN denotes RNA
T29606 525-529 IN denotes from
T29607 530-536 DT denotes either
T29608 537-541 NN denotes skin
T29609 541-543 , denotes ,
T29610 543-548 NN denotes liver
T29611 548-550 , denotes ,
T29612 550-552 CC denotes or
T29613 553-559 NN denotes thymus
T29614 560-564 IN denotes from
T29615 565-569 DT denotes each
T29616 570-578 NN denotes genotype
T29617 579-582 VBD denotes was
T29618 583-590 RB denotes reverse
T29619 590-591 HYPH denotes -
T29620 603-608 VBG denotes using
T29621 609-616 NNS denotes primers
T29622 617-620 NN denotes Apc
T29623 621-625 NN denotes F546
T29624 620-621 HYPH denotes -
T29625 626-627 -LRB- denotes (
T29626 627-648 NN denotes TGAGGAATTTGTCTTGGCGAG
T29627 648-649 -RRB- denotes )
T29628 650-653 CC denotes and
T29629 654-657 NN denotes Apc
T29630 658-662 NN denotes R721
T29631 657-658 HYPH denotes -
T29632 663-664 -LRB- denotes (
T29633 664-685 NN denotes GCACTTCCCATGGCAATCATT
T29634 685-686 -RRB- denotes )
T29635 686-688 , denotes ,
T29636 688-697 VBG denotes resulting
T29637 698-700 IN denotes in
T29638 701-704 CD denotes 528
T29639 705-707 NNS denotes bp
T29640 704-705 HYPH denotes -
T29641 719-727 NNS denotes products
T29642 708-711 CC denotes and
T29643 712-715 CD denotes 313
T29644 716-718 NNS denotes bp
T29645 715-716 HYPH denotes -
T29646 728-732 IN denotes from
T29647 733-736 DT denotes the
T29648 754-761 NNS denotes alleles
T29649 737-741 JJ denotes wild
T29650 742-746 NN denotes type
T29651 741-742 HYPH denotes -
T29652 746-747 HYPH denotes /
T29653 747-753 NN denotes ApcCKO
T29654 762-765 CC denotes and
T29655 766-773 NN denotes ApcΔ580
T29656 774-780 NN denotes allele
T29657 780-782 , denotes ,
T29658 782-794 RB denotes respectively
T29659 794-795 . denotes .
R8958 T29508 T29509 compound Genotype,tissue
R8959 T29509 T29511 npadvmod tissue,specific
R8960 T29510 T29509 punct /,tissue
R8961 T29511 T29513 amod specific,recombination
R8962 T29512 T29511 punct -,specific
R8963 T29513 T29514 nsubjpass recombination,examined
R8964 T29515 T29513 prep of,recombination
R8965 T29516 T29517 det the,allele
R8966 T29517 T29515 pobj allele,of
R8967 T29518 T29517 amod conditional,allele
R8968 T29519 T29514 auxpass was,examined
R8969 T29520 T29514 prep by,examined
R8970 T29521 T29522 preconj both,PCR
R8971 T29522 T29520 pobj PCR,by
R8972 T29523 T29522 cc and,PCR
R8973 T29524 T29525 compound RT,PCR
R8974 T29525 T29522 conj PCR,PCR
R8975 T29526 T29525 punct -,PCR
R8976 T29527 T29514 punct .,examined
R8977 T29529 T29530 compound DNA,samples
R8978 T29530 T29531 nsubjpass samples,examined
R8979 T29532 T29530 acl extracted,samples
R8980 T29533 T29532 prep from,extracted
R8981 T29534 T29535 amod various,tissues
R8982 T29535 T29533 pobj tissues,from
R8983 T29536 T29535 acl collected,tissues
R8984 T29537 T29536 prep at,collected
R8985 T29538 T29539 det the,time
R8986 T29539 T29537 pobj time,at
R8987 T29540 T29539 prep of,time
R8988 T29541 T29540 pobj autopsy,of
R8989 T29542 T29531 auxpass were,examined
R8990 T29543 T29531 prep by,examined
R8991 T29544 T29543 pcomp genotyping,by
R8992 T29545 T29544 dobj PCR,genotyping
R8993 T29546 T29547 mark as,described
R8994 T29547 T29544 advcl described,genotyping
R8995 T29548 T29531 punct .,examined
R8996 T29550 T29551 nsubjpass RNA,examined
R8997 T29552 T29550 acl extracted,RNA
R8998 T29553 T29552 prep from,extracted
R8999 T29554 T29555 amod various,homogenates
R9000 T29555 T29553 pobj homogenates,from
R9001 T29556 T29555 compound tissue,homogenates
R9002 T29557 T29555 prep in,homogenates
R9003 T29558 T29559 compound Trizol,reagent
R9004 T29559 T29557 pobj reagent,in
R9005 T29560 T29551 auxpass were,examined
R9006 T29561 T29551 prep for,examined
R9007 T29562 T29561 pobj expression,for
R9008 T29563 T29562 prep of,expression
R9009 T29564 T29565 amod wild,type
R9010 T29565 T29567 nmod type,alleles
R9011 T29566 T29565 punct -,type
R9012 T29567 T29563 pobj alleles,of
R9013 T29568 T29565 cc and,type
R9014 T29569 T29570 amod truncated,Apc
R9015 T29570 T29565 conj Apc,type
R9016 T29571 T29551 prep by,examined
R9017 T29572 T29573 nmod SuperScript,PCR
R9018 T29573 T29571 pobj PCR,by
R9019 T29574 T29575 nummod One,Step
R9020 T29575 T29573 compound Step,PCR
R9021 T29576 T29575 punct -,Step
R9022 T29577 T29573 compound RT,PCR
R9023 T29578 T29573 punct -,PCR
R9024 T29579 T29573 prep with,PCR
R9025 T29580 T29581 compound Platinum,Taq
R9026 T29581 T29579 pobj Taq,with
R9027 T29582 T29583 punct (,Invitrogen
R9028 T29583 T29573 parataxis Invitrogen,PCR
R9029 T29584 T29583 punct ", ",Invitrogen
R9030 T29585 T29583 npadvmod Carlsbad,Invitrogen
R9031 T29586 T29583 punct ", ",Invitrogen
R9032 T29587 T29583 npadvmod California,Invitrogen
R9033 T29588 T29583 punct ", ",Invitrogen
R9034 T29589 T29590 compound United,States
R9035 T29590 T29583 npadvmod States,Invitrogen
R9036 T29591 T29583 punct ),Invitrogen
R9037 T29592 T29551 punct ", ",examined
R9038 T29593 T29551 advcl following,examined
R9039 T29594 T29595 poss manufacturer,protocol
R9040 T29595 T29593 dobj protocol,following
R9041 T29596 T29594 case 's,manufacturer
R9042 T29597 T29551 punct .,examined
R9043 T29599 T29600 advmod Approximately,ng
R9044 T29600 T29602 nsubjpass ng,transcribed
R9045 T29601 T29600 nummod 200,ng
R9046 T29603 T29600 prep of,ng
R9047 T29604 T29605 amod total,RNA
R9048 T29605 T29603 pobj RNA,of
R9049 T29606 T29605 prep from,RNA
R9050 T29607 T29608 det either,skin
R9051 T29608 T29606 pobj skin,from
R9052 T29609 T29608 punct ", ",skin
R9053 T29610 T29608 conj liver,skin
R9054 T29611 T29610 punct ", ",liver
R9055 T29612 T29610 cc or,liver
R9056 T29613 T29610 conj thymus,liver
R9057 T29614 T29608 prep from,skin
R9058 T29615 T29616 det each,genotype
R9059 T29616 T29614 pobj genotype,from
R9060 T29617 T29602 auxpass was,transcribed
R9061 T29618 T29602 advmod reverse,transcribed
R9062 T29619 T29602 punct -,transcribed
R9063 T29620 T29602 advcl using,transcribed
R9064 T29621 T29620 dobj primers,using
R9065 T29622 T29623 compound Apc,F546
R9066 T29623 T29621 appos F546,primers
R9067 T29624 T29623 punct -,F546
R9068 T29625 T29626 punct (,TGAGGAATTTGTCTTGGCGAG
R9069 T29626 T29623 parataxis TGAGGAATTTGTCTTGGCGAG,F546
R9070 T29627 T29626 punct ),TGAGGAATTTGTCTTGGCGAG
R9071 T29628 T29623 cc and,F546
R9072 T29629 T29630 compound Apc,R721
R9073 T29630 T29623 conj R721,F546
R9074 T29631 T29630 punct -,R721
R9075 T29632 T29633 punct (,GCACTTCCCATGGCAATCATT
R9076 T29633 T29630 parataxis GCACTTCCCATGGCAATCATT,R721
R9077 T29634 T29633 punct ),GCACTTCCCATGGCAATCATT
R9078 T29635 T29602 punct ", ",transcribed
R9079 T29636 T29602 advcl resulting,transcribed
R9080 T29637 T29636 prep in,resulting
R9081 T29638 T29639 nummod 528,bp
R9082 T29639 T29641 nmod bp,products
R9083 T29640 T29639 punct -,bp
R9084 T29641 T29637 pobj products,in
R9085 T29642 T29639 cc and,bp
R9086 T29643 T29644 nummod 313,bp
R9087 T29644 T29639 conj bp,bp
R9088 T29645 T29644 punct -,bp
R9089 T29646 T29641 prep from,products
R9090 T29647 T29648 det the,alleles
R9091 T29648 T29646 pobj alleles,from
R9092 T29649 T29650 amod wild,type
R9093 T29650 T29648 nmod type,alleles
R9094 T29651 T29650 punct -,type
R9095 T29652 T29650 punct /,type
R9096 T29653 T29650 appos ApcCKO,type
R9097 T29654 T29648 cc and,alleles
R9098 T29655 T29656 compound ApcΔ580,allele
R9099 T29656 T29648 conj allele,alleles
R9100 T29657 T29636 punct ", ",resulting
R9101 T29658 T29636 advmod respectively,resulting
R9102 T29659 T29602 punct .,transcribed