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PMC:1564426 / 54571-55129 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T28745 35-42 UBERON:0000922 denotes embryos
T28746 84-89 CHEBI:75055 denotes X-gal
T28747 99-102 CHEBI:60004 denotes mix
T28748 121-126 CHEBI:37586 denotes NaPO4
T28749 135-140 CHEBI:6636 denotes MgCl2
T28750 147-156 CHEBI:30060 denotes K3Fe(CN)6
T28751 163-172 CHEBI:30059 denotes K4Fe(CN)6
T28752 186-191 CHEBI:75055 denotes X-gal
T28753 258-267 UBERON:0007376 denotes epidermal
T28754 281-289 CHEBI:75958 denotes solution
T28755 301-310 UBERON:0007376 denotes epidermis
T28756 329-344 GO_EXT:0004565 denotes β-galactosidase
T28757 359-368 GO_MOP_EXT:catalysis denotes catalyzes
T28758 419-426 UBERON:0000922 denotes embryos
T28759 483-499 CHEBI_EXT:paraformaldehye denotes paraformaldehyde

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T28732 35-42 UBERON:0000922 denotes embryos
T28733 84-89 CHEBI:75055 denotes X-gal
T28734 99-102 CHEBI:60004 denotes mix
T28735 121-126 CHEBI:37586 denotes NaPO4
T28736 135-140 CHEBI:6636 denotes MgCl2
T28737 147-156 CHEBI:30060 denotes K3Fe(CN)6
T28738 163-172 CHEBI:30059 denotes K4Fe(CN)6
T28739 186-191 CHEBI:75055 denotes X-gal
T28740 258-267 UBERON:0007376 denotes epidermal
T28741 281-289 CHEBI:75958 denotes solution
T28742 301-310 UBERON:0007376 denotes epidermis
T28743 419-426 UBERON:0000922 denotes embryos

craft-sa-dev

Id Subject Object Predicate Lexical cue
T28765 0-7 JJ denotes Unfixed
T28766 35-42 NNS denotes embryos
T28767 8-11 CC denotes and
T28768 12-19 RB denotes freshly
T28769 20-28 VBN denotes isolated
T28770 29-34 NN denotes E18.5
T28771 48-54 VBN denotes rinsed
T28772 43-47 VBD denotes were
T28773 55-57 IN denotes in
T28774 58-61 NNS denotes PBS
T28775 62-65 CC denotes and
T28776 66-70 RB denotes then
T28777 71-80 VBD denotes submerged
T28778 81-83 IN denotes in
T28779 84-85 NN denotes X
T28780 86-89 NN denotes gal
T28781 85-86 HYPH denotes -
T28782 99-102 NN denotes mix
T28783 90-98 NN denotes reaction
T28784 103-105 IN denotes at
T28785 106-108 NN denotes pH
T28786 109-112 CD denotes 4.5
T28787 113-114 -LRB- denotes (
T28788 121-126 NN denotes NaPO4
T28789 114-117 CD denotes 100
T28790 118-120 NNS denotes mM
T28791 126-128 , denotes ,
T28792 128-131 CD denotes 1.3
T28793 132-134 NNS denotes mM
T28794 135-140 NN denotes MgCl2
T28795 140-142 , denotes ,
T28796 142-143 CD denotes 3
T28797 144-146 NN denotes mM
T28798 147-151 NN denotes K3Fe
T28799 151-152 -LRB- denotes (
T28800 152-154 NN denotes CN
T28801 154-155 -RRB- denotes )
T28802 155-156 CD denotes 6
T28803 156-158 , denotes ,
T28804 158-159 CD denotes 3
T28805 160-162 NN denotes mM
T28806 163-167 NN denotes K4Fe
T28807 167-168 -LRB- denotes (
T28808 168-170 NN denotes CN
T28809 170-171 -RRB- denotes )
T28810 171-172 CD denotes 6
T28811 172-174 , denotes ,
T28812 174-177 CC denotes and
T28813 178-179 CD denotes 1
T28814 180-182 NN denotes mg
T28815 188-191 NN denotes gal
T28816 182-183 SYM denotes /
T28817 183-185 NN denotes ml
T28818 186-187 NN denotes X
T28819 187-188 HYPH denotes -
T28820 191-192 -RRB- denotes )
T28821 193-195 IN denotes at
T28822 196-200 NN denotes room
T28823 201-212 NN denotes temperature
T28824 213-222 RB denotes overnight
T28825 223-224 -LRB- denotes [
T28826 224-226 CD denotes 36
T28827 226-227 -RRB- denotes ]
T28828 227-228 . denotes .
T28829 228-402 sentence denotes At this pH in the absence of epidermal barrier, the solution penetrates epidermis and an endogenous β-galactosidase–like activity catalyzes production of a blue precipitate.
T28830 229-231 IN denotes At
T28831 290-300 VBZ denotes penetrates
T28832 232-236 DT denotes this
T28833 237-239 NN denotes pH
T28834 240-242 IN denotes in
T28835 243-246 DT denotes the
T28836 247-254 NN denotes absence
T28837 255-257 IN denotes of
T28838 258-267 JJ denotes epidermal
T28839 268-275 NN denotes barrier
T28840 275-277 , denotes ,
T28841 277-280 DT denotes the
T28842 281-289 NN denotes solution
T28843 301-310 NN denotes epidermis
T28844 311-314 CC denotes and
T28845 315-317 DT denotes an
T28846 350-358 NN denotes activity
T28847 318-328 JJ denotes endogenous
T28848 329-330 JJ denotes β
T28849 331-344 NN denotes galactosidase
T28850 330-331 HYPH denotes -
T28851 345-349 JJ denotes like
T28852 344-345 HYPH denotes –
T28853 359-368 VBZ denotes catalyzes
T28854 369-379 NN denotes production
T28855 380-382 IN denotes of
T28856 383-384 DT denotes a
T28857 390-401 NN denotes precipitate
T28858 385-389 JJ denotes blue
T28859 401-402 . denotes .
T28860 402-558 sentence denotes After staining, embryos were washed twice in PBS, fixed overnight at 4 °C in 4% paraformaldehyde, and were photographed using a 35 mm Nikon digital camera.
T28861 403-408 IN denotes After
T28862 432-438 VBN denotes washed
T28863 409-417 NN denotes staining
T28864 417-419 , denotes ,
T28865 419-426 NNS denotes embryos
T28866 427-431 VBD denotes were
T28867 439-444 RB denotes twice
T28868 445-447 IN denotes in
T28869 448-451 NNP denotes PBS
T28870 451-453 , denotes ,
T28871 453-458 VBN denotes fixed
T28872 459-468 RB denotes overnight
T28873 469-471 IN denotes at
T28874 472-473 CD denotes 4
T28875 474-476 NNS denotes °C
T28876 477-479 IN denotes in
T28877 480-481 CD denotes 4
T28878 481-482 NN denotes %
T28879 483-499 NN denotes paraformaldehyde
T28880 499-501 , denotes ,
T28881 501-504 CC denotes and
T28882 505-509 VBD denotes were
T28883 510-522 VBN denotes photographed
T28884 523-528 VBG denotes using
T28885 529-530 DT denotes a
T28886 551-557 NN denotes camera
T28887 531-533 CD denotes 35
T28888 534-536 NN denotes mm
T28889 537-542 NNP denotes Nikon
T28890 543-550 JJ denotes digital
T28891 557-558 . denotes .
R8741 T28765 T28766 amod Unfixed,embryos
R8742 T28766 T28771 nsubjpass embryos,rinsed
R8743 T28767 T28765 cc and,Unfixed
R8744 T28768 T28769 advmod freshly,isolated
R8745 T28769 T28765 conj isolated,Unfixed
R8746 T28770 T28766 compound E18.5,embryos
R8747 T28772 T28771 auxpass were,rinsed
R8748 T28773 T28771 prep in,rinsed
R8749 T28774 T28773 pobj PBS,in
R8750 T28775 T28771 cc and,rinsed
R8751 T28776 T28777 advmod then,submerged
R8752 T28777 T28771 conj submerged,rinsed
R8753 T28778 T28777 prep in,submerged
R8754 T28779 T28780 compound X,gal
R8755 T28780 T28782 compound gal,mix
R8756 T28781 T28780 punct -,gal
R8757 T28782 T28778 pobj mix,in
R8758 T28783 T28782 compound reaction,mix
R8759 T28784 T28782 prep at,mix
R8760 T28785 T28784 pobj pH,at
R8761 T28786 T28785 nummod 4.5,pH
R8762 T28787 T28788 punct (,NaPO4
R8763 T28788 T28782 parataxis NaPO4,mix
R8764 T28789 T28790 nummod 100,mM
R8765 T28790 T28788 compound mM,NaPO4
R8766 T28791 T28788 punct ", ",NaPO4
R8767 T28792 T28793 nummod 1.3,mM
R8768 T28793 T28794 compound mM,MgCl2
R8769 T28794 T28788 conj MgCl2,NaPO4
R8770 T28795 T28794 punct ", ",MgCl2
R8771 T28796 T28797 nummod 3,mM
R8772 T28797 T28798 compound mM,K3Fe
R8773 T28798 T28794 conj K3Fe,MgCl2
R8774 T28799 T28800 punct (,CN
R8775 T28800 T28798 parataxis CN,K3Fe
R8776 T28801 T28800 punct ),CN
R8777 T28802 T28798 nummod 6,K3Fe
R8778 T28803 T28798 punct ", ",K3Fe
R8779 T28804 T28805 nummod 3,mM
R8780 T28805 T28806 compound mM,K4Fe
R8781 T28806 T28798 conj K4Fe,K3Fe
R8782 T28807 T28808 punct (,CN
R8783 T28808 T28806 parataxis CN,K4Fe
R8784 T28809 T28808 punct ),CN
R8785 T28810 T28806 nummod 6,K4Fe
R8786 T28811 T28806 punct ", ",K4Fe
R8787 T28812 T28806 cc and,K4Fe
R8788 T28813 T28814 nummod 1,mg
R8789 T28814 T28815 nmod mg,gal
R8790 T28815 T28806 conj gal,K4Fe
R8791 T28816 T28817 punct /,ml
R8792 T28817 T28814 prep ml,mg
R8793 T28818 T28815 compound X,gal
R8794 T28819 T28815 punct -,gal
R8795 T28820 T28815 punct ),gal
R8796 T28821 T28777 prep at,submerged
R8797 T28822 T28823 compound room,temperature
R8798 T28823 T28821 pobj temperature,at
R8799 T28824 T28777 advmod overnight,submerged
R8800 T28825 T28826 punct [,36
R8801 T28826 T28777 parataxis 36,submerged
R8802 T28827 T28826 punct ],36
R8803 T28828 T28771 punct .,rinsed
R8804 T28830 T28831 prep At,penetrates
R8805 T28832 T28833 det this,pH
R8806 T28833 T28830 pobj pH,At
R8807 T28834 T28831 prep in,penetrates
R8808 T28835 T28836 det the,absence
R8809 T28836 T28834 pobj absence,in
R8810 T28837 T28836 prep of,absence
R8811 T28838 T28839 amod epidermal,barrier
R8812 T28839 T28837 pobj barrier,of
R8813 T28840 T28831 punct ", ",penetrates
R8814 T28841 T28842 det the,solution
R8815 T28842 T28831 nsubj solution,penetrates
R8816 T28843 T28831 dobj epidermis,penetrates
R8817 T28844 T28831 cc and,penetrates
R8818 T28845 T28846 det an,activity
R8819 T28846 T28853 nsubj activity,catalyzes
R8820 T28847 T28846 amod endogenous,activity
R8821 T28848 T28849 amod β,galactosidase
R8822 T28849 T28851 npadvmod galactosidase,like
R8823 T28850 T28849 punct -,galactosidase
R8824 T28851 T28846 amod like,activity
R8825 T28852 T28851 punct –,like
R8826 T28853 T28831 conj catalyzes,penetrates
R8827 T28854 T28853 dobj production,catalyzes
R8828 T28855 T28854 prep of,production
R8829 T28856 T28857 det a,precipitate
R8830 T28857 T28855 pobj precipitate,of
R8831 T28858 T28857 amod blue,precipitate
R8832 T28859 T28831 punct .,penetrates
R8833 T28861 T28862 prep After,washed
R8834 T28863 T28861 pobj staining,After
R8835 T28864 T28862 punct ", ",washed
R8836 T28865 T28862 nsubjpass embryos,washed
R8837 T28866 T28862 auxpass were,washed
R8838 T28867 T28862 advmod twice,washed
R8839 T28868 T28862 prep in,washed
R8840 T28869 T28868 pobj PBS,in
R8841 T28870 T28862 punct ", ",washed
R8842 T28871 T28862 dep fixed,washed
R8843 T28872 T28871 advmod overnight,fixed
R8844 T28873 T28871 prep at,fixed
R8845 T28874 T28875 nummod 4,°C
R8846 T28875 T28873 pobj °C,at
R8847 T28876 T28871 prep in,fixed
R8848 T28877 T28878 nummod 4,%
R8849 T28878 T28879 compound %,paraformaldehyde
R8850 T28879 T28876 pobj paraformaldehyde,in
R8851 T28880 T28862 punct ", ",washed
R8852 T28881 T28862 cc and,washed
R8853 T28882 T28883 auxpass were,photographed
R8854 T28883 T28862 conj photographed,washed
R8855 T28884 T28883 advcl using,photographed
R8856 T28885 T28886 det a,camera
R8857 T28886 T28884 dobj camera,using
R8858 T28887 T28888 nummod 35,mm
R8859 T28888 T28886 nmod mm,camera
R8860 T28889 T28886 nmod Nikon,camera
R8861 T28890 T28886 amod digital,camera
R8862 T28891 T28862 punct .,washed

2_test

Id Subject Object Predicate Lexical cue
17002498-11923212-85593538 224-226 11923212 denotes 36
T84581 224-226 11923212 denotes 36