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PMC:1564426 / 50963-51509 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T26510 16-33 SO_EXT:0001644 denotes targeting vectors
T26511 49-52 PR_EXT:000004122 denotes Apc
T26512 72-75 SO_EXT:0000153 denotes BAC
T26513 76-81 SO_EXT:sequence_cloned_entity denotes clone
T26514 116-124 SO_EXT:biological_sequence denotes sequence
T26515 128-131 PR_EXT:000004122 denotes Apc
T26516 147-153 SO_EXT:0000204 denotes 5′ UTR
T26517 158-162 SO_EXT:0000147 denotes exon
T26518 229-238 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T26519 262-265 SO_EXT:0000153 denotes BAC
T26520 278-291 SO_EXT:sequence_alteration_entity_or_process denotes modifications
T26521 312-319 SO_EXT:0001026 denotes genomic
T26522 320-328 SO_EXT:biological_sequence denotes sequence
T26523 342-345 PR_EXT:000004122 denotes Apc
T26524 346-351 SO_EXT:0000147 denotes exons
T26525 393-399 SO_EXT:0000440 denotes vector
T26526 412-421 SO_EXT:0000346 denotes loxP site
T26527 442-448 SO_EXT:0000188 denotes intron
T26528 464-468 SO_EXT:0000346 denotes loxP
T26529 469-472 SO_EXT:0000350 denotes FRT
T26530 473-476 GO_EXT:phosphoglycerate_kinase denotes PGK
T26531 476-479 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
T26532 476-480 GO_EXT:0008910 denotes neor
T26533 481-484 SO_EXT:0000350 denotes FRT
T26534 495-503 SO_EXT:0005853 denotes cassette
T26535 525-528 PR_EXT:000004122 denotes Apc
T26536 529-533 SO_EXT:0000704 denotes gene

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T26491 16-33 SO:0001644 denotes targeting vectors
T26492 49-52 PR:000004122 denotes Apc
T26493 72-75 SO:0000153 denotes BAC
T26494 128-131 PR:000004122 denotes Apc
T26495 147-153 SO:0000204 denotes 5′ UTR
T26496 158-162 SO:0000147 denotes exon
T26497 262-265 SO:0000153 denotes BAC
T26498 312-319 SO:0001026 denotes genomic
T26499 342-345 PR:000004122 denotes Apc
T26500 346-351 SO:0000147 denotes exons
T26501 393-399 SO:0000440 denotes vector
T26502 412-421 SO:0000346 denotes loxP site
T26503 442-448 SO:0000188 denotes intron
T26504 464-468 SO:0000346 denotes loxP
T26505 469-472 SO:0000350 denotes FRT
T26506 481-484 SO:0000350 denotes FRT
T26507 495-503 SO:0005853 denotes cassette
T26508 525-528 PR:000004122 denotes Apc
T26509 529-533 SO:0000704 denotes gene

craft-sa-dev

Id Subject Object Predicate Lexical cue
T26537 0-12 NN denotes Construction
T26538 13-15 IN denotes of
T26539 16-25 NN denotes targeting
T26540 26-33 NNS denotes vectors
T26541 33-34 . denotes .
T26542 34-165 sentence denotes To target the Apc locus, we obtained BAC clone RP23-233F17 that contains all the sequence of Apc except for the 5′ UTR and exon 1.
T26543 35-37 TO denotes To
T26544 38-44 VB denotes target
T26545 63-71 VBD denotes obtained
T26546 45-48 DT denotes the
T26547 53-58 NN denotes locus
T26548 49-52 NN denotes Apc
T26549 58-60 , denotes ,
T26550 60-62 PRP denotes we
T26551 72-75 NN denotes BAC
T26552 76-81 NN denotes clone
T26553 82-86 NN denotes RP23
T26554 87-93 NN denotes 233F17
T26555 86-87 HYPH denotes -
T26556 94-98 WDT denotes that
T26557 99-107 VBZ denotes contains
T26558 108-111 PDT denotes all
T26559 116-124 NN denotes sequence
T26560 112-115 DT denotes the
T26561 125-127 IN denotes of
T26562 128-131 NN denotes Apc
T26563 132-138 IN denotes except
T26564 139-142 IN denotes for
T26565 143-146 DT denotes the
T26566 150-153 NN denotes UTR
T26567 147-148 CD denotes 5
T26568 148-149 SYM denotes ′
T26569 154-157 CC denotes and
T26570 158-162 NN denotes exon
T26571 163-164 CD denotes 1
T26572 164-165 . denotes .
T26573 165-307 sentence denotes Using a recombineering-based method for generating conditional mutations [12,13], subcloning of BAC and further modifications were conducted.
T26574 166-171 VBG denotes Using
T26575 297-306 VBN denotes conducted
T26576 172-173 DT denotes a
T26577 195-201 NN denotes method
T26578 174-188 NN denotes recombineering
T26579 189-194 JJ denotes based
T26580 188-189 HYPH denotes -
T26581 202-205 IN denotes for
T26582 206-216 VBG denotes generating
T26583 217-228 JJ denotes conditional
T26584 229-238 NNS denotes mutations
T26585 239-240 -LRB- denotes [
T26586 243-245 CD denotes 13
T26587 240-242 CD denotes 12
T26588 242-243 , denotes ,
T26589 245-246 -RRB- denotes ]
T26590 246-248 , denotes ,
T26591 248-258 NN denotes subcloning
T26592 259-261 IN denotes of
T26593 262-265 NN denotes BAC
T26594 266-269 CC denotes and
T26595 270-277 JJ denotes further
T26596 278-291 NNS denotes modifications
T26597 292-296 VBD denotes were
T26598 306-307 . denotes .
T26599 307-546 sentence denotes The genomic sequence encompassing Apc exons 11 to 15 was first subcloned into pBR322 vector, and then a loxP site was introduced into intron 13 followed by loxP-FRT-PGKneor-FRT selection cassette into intron14 of the Apc gene (Figure 1A).
T26600 308-311 DT denotes The
T26601 320-328 NN denotes sequence
T26602 312-319 JJ denotes genomic
T26603 371-380 VBN denotes subcloned
T26604 329-341 VBG denotes encompassing
T26605 342-345 NN denotes Apc
T26606 352-354 CD denotes 11
T26607 346-351 NNS denotes exons
T26608 355-357 IN denotes to
T26609 358-360 CD denotes 15
T26610 361-364 VBD denotes was
T26611 365-370 RB denotes first
T26612 381-385 IN denotes into
T26613 386-392 NN denotes pBR322
T26614 393-399 NN denotes vector
T26615 399-401 , denotes ,
T26616 401-404 CC denotes and
T26617 405-409 RB denotes then
T26618 452-460 VBN denotes followed
T26619 410-411 DT denotes a
T26620 417-421 NN denotes site
T26621 412-416 NN denotes loxP
T26622 422-425 VBD denotes was
T26623 426-436 VBN denotes introduced
T26624 437-441 IN denotes into
T26625 442-448 NN denotes intron
T26626 449-451 CD denotes 13
T26627 461-463 IN denotes by
T26628 464-468 NN denotes loxP
T26629 469-472 NN denotes FRT
T26630 468-469 HYPH denotes -
T26631 495-503 NN denotes cassette
T26632 472-473 HYPH denotes -
T26633 473-480 NN denotes PGKneor
T26634 481-484 NN denotes FRT
T26635 480-481 HYPH denotes -
T26636 485-494 NN denotes selection
T26637 504-508 IN denotes into
T26638 509-517 NN denotes intron14
T26639 518-520 IN denotes of
T26640 521-524 DT denotes the
T26641 529-533 NN denotes gene
T26642 525-528 NN denotes Apc
T26643 534-535 -LRB- denotes (
T26644 542-544 NN denotes 1A
T26645 535-541 NN denotes Figure
T26646 544-545 -RRB- denotes )
T26647 545-546 . denotes .
R8050 T26538 T26537 prep of,Construction
R8051 T26539 T26540 compound targeting,vectors
R8052 T26540 T26538 pobj vectors,of
R8053 T26541 T26537 punct .,Construction
R8054 T26543 T26544 aux To,target
R8055 T26544 T26545 advcl target,obtained
R8056 T26546 T26547 det the,locus
R8057 T26547 T26544 dobj locus,target
R8058 T26548 T26547 compound Apc,locus
R8059 T26549 T26545 punct ", ",obtained
R8060 T26550 T26545 nsubj we,obtained
R8061 T26551 T26552 compound BAC,clone
R8062 T26552 T26545 dobj clone,obtained
R8063 T26553 T26554 compound RP23,233F17
R8064 T26554 T26552 appos 233F17,clone
R8065 T26555 T26554 punct -,233F17
R8066 T26556 T26557 dep that,contains
R8067 T26557 T26552 relcl contains,clone
R8068 T26558 T26559 predet all,sequence
R8069 T26559 T26557 dobj sequence,contains
R8070 T26560 T26559 det the,sequence
R8071 T26561 T26559 prep of,sequence
R8072 T26562 T26561 pobj Apc,of
R8073 T26563 T26559 prep except,sequence
R8074 T26564 T26563 prep for,except
R8075 T26565 T26566 det the,UTR
R8076 T26566 T26564 pobj UTR,for
R8077 T26567 T26566 nummod 5,UTR
R8078 T26568 T26567 punct ′,5
R8079 T26569 T26566 cc and,UTR
R8080 T26570 T26566 conj exon,UTR
R8081 T26571 T26570 nummod 1,exon
R8082 T26572 T26545 punct .,obtained
R8083 T26574 T26575 advcl Using,conducted
R8084 T26576 T26577 det a,method
R8085 T26577 T26574 dobj method,Using
R8086 T26578 T26579 npadvmod recombineering,based
R8087 T26579 T26577 amod based,method
R8088 T26580 T26579 punct -,based
R8089 T26581 T26577 prep for,method
R8090 T26582 T26581 pcomp generating,for
R8091 T26583 T26584 amod conditional,mutations
R8092 T26584 T26582 dobj mutations,generating
R8093 T26585 T26586 punct [,13
R8094 T26586 T26574 parataxis 13,Using
R8095 T26587 T26586 nummod 12,13
R8096 T26588 T26586 punct ",",13
R8097 T26589 T26586 punct ],13
R8098 T26590 T26575 punct ", ",conducted
R8099 T26591 T26575 nsubjpass subcloning,conducted
R8100 T26592 T26591 prep of,subcloning
R8101 T26593 T26592 pobj BAC,of
R8102 T26594 T26591 cc and,subcloning
R8103 T26595 T26596 amod further,modifications
R8104 T26596 T26591 conj modifications,subcloning
R8105 T26597 T26575 auxpass were,conducted
R8106 T26598 T26575 punct .,conducted
R8107 T26600 T26601 det The,sequence
R8108 T26601 T26603 nsubjpass sequence,subcloned
R8109 T26602 T26601 amod genomic,sequence
R8110 T26604 T26601 acl encompassing,sequence
R8111 T26605 T26606 nmod Apc,11
R8112 T26606 T26604 dobj 11,encompassing
R8113 T26607 T26606 nmod exons,11
R8114 T26608 T26606 prep to,11
R8115 T26609 T26608 pobj 15,to
R8116 T26610 T26603 auxpass was,subcloned
R8117 T26611 T26603 advmod first,subcloned
R8118 T26612 T26603 prep into,subcloned
R8119 T26613 T26614 compound pBR322,vector
R8120 T26614 T26612 pobj vector,into
R8121 T26615 T26603 punct ", ",subcloned
R8122 T26616 T26603 cc and,subcloned
R8123 T26617 T26618 advmod then,followed
R8124 T26618 T26603 conj followed,subcloned
R8125 T26619 T26620 det a,site
R8126 T26620 T26618 nsubjpass site,followed
R8127 T26621 T26620 compound loxP,site
R8128 T26622 T26618 auxpass was,followed
R8129 T26623 T26618 aux introduced,followed
R8130 T26624 T26618 prep into,followed
R8131 T26625 T26624 pobj intron,into
R8132 T26626 T26625 nummod 13,intron
R8133 T26627 T26618 agent by,followed
R8134 T26628 T26629 nmod loxP,FRT
R8135 T26629 T26631 nmod FRT,cassette
R8136 T26630 T26629 punct -,FRT
R8137 T26631 T26627 pobj cassette,by
R8138 T26632 T26629 punct -,FRT
R8139 T26633 T26634 compound PGKneor,FRT
R8140 T26634 T26629 appos FRT,FRT
R8141 T26635 T26634 punct -,FRT
R8142 T26636 T26631 compound selection,cassette
R8143 T26637 T26631 prep into,cassette
R8144 T26638 T26637 pobj intron14,into
R8145 T26639 T26638 prep of,intron14
R8146 T26640 T26641 det the,gene
R8147 T26641 T26639 pobj gene,of
R8148 T26642 T26641 compound Apc,gene
R8149 T26643 T26644 punct (,1A
R8150 T26644 T26618 parataxis 1A,followed
R8151 T26645 T26644 compound Figure,1A
R8152 T26646 T26644 punct ),1A
R8153 T26647 T26618 punct .,followed

2_test

Id Subject Object Predicate Lexical cue
17002498-11352566-85593533 240-242 11352566 denotes 12
17002498-12618378-85593534 243-245 12618378 denotes 13
T46410 240-242 11352566 denotes 12
T7670 243-245 12618378 denotes 13