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PMC:1564426 / 3749-4546 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2253 0-3 PR_EXT:000004122 denotes APC
T2254 26-30 SO_EXT:0000704 denotes gene
T2255 40-49 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T2256 53-56 PR_EXT:000004122 denotes APC
T2257 109-114 UBERON:0001155 denotes colon
T2258 119-125 UBERON:0001052 denotes rectum
T2259 127-136 GO:0030849 denotes Autosomal
T2260 155-164 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T2261 168-171 PR_EXT:000004122 denotes APC
T2262 307-317 UBERON:0012652 denotes colorectal
T2263 367-377 UBERON:0012652 denotes colorectal
T2264 420-424 UBERON:0000104 denotes life
T2265 447-457 UBERON:0012652 denotes colorectal
T2266 474-485 NCBITaxon:1 denotes individuals
T2267 503-510 UBERON:0001155 denotes colonic
T2268 543-565 UBERON:0001555 denotes gastrointestinal tract
T2269 604-630 UBERON:0001782 denotes retinal pigment epithelium
T2270 612-619 CHEBI_EXT:26130 denotes pigment
T2271 665-674 UBERON:0002397 denotes maxillary
T2272 679-687 UBERON:0004288 denotes skeletal
T2273 688-693 UBERON:0001474 denotes bones
T2274 699-705 UBERON:0001091 denotes dental
T2275 754-757 PR_EXT:000004122 denotes APC
T2276 758-762 SO_EXT:0000704 denotes gene
T2277 782-795 UBERON:0000467 denotes organ systems

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2105 0-3 PR:000004122 denotes APC
T2106 26-30 SO:0000704 denotes gene
T2107 53-56 PR:000004122 denotes APC
T2108 109-114 UBERON:0001155 denotes colon
T2109 119-125 UBERON:0001052 denotes rectum
T2110 127-136 GO:0030849 denotes Autosomal
T2111 168-171 PR:000004122 denotes APC
T2112 307-317 UBERON:0012652 denotes colorectal
T2113 367-377 UBERON:0012652 denotes colorectal
T2114 420-424 UBERON:0000104 denotes life
T2115 447-457 UBERON:0012652 denotes colorectal
T2116 474-485 NCBITaxon:1 denotes individuals
T2117 503-510 UBERON:0001155 denotes colonic
T2118 543-565 UBERON:0001555 denotes gastrointestinal tract
T2119 604-630 UBERON:0001782 denotes retinal pigment epithelium
T2120 612-619 CHEBI:26130 denotes pigment
T2121 665-674 UBERON:0002397 denotes maxillary
T2122 679-687 UBERON:0004288 denotes skeletal
T2123 688-693 UBERON:0001474 denotes bones
T2124 699-705 UBERON:0001091 denotes dental
T2125 754-757 PR:000004122 denotes APC
T2126 758-762 SO:0000704 denotes gene
T2127 782-795 UBERON:0000467 denotes organ systems

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2555 0-3 NN denotes APC
T2556 4-6 VBZ denotes is
T2557 7-8 DT denotes a
T2558 26-30 NN denotes gene
T2559 9-14 NN denotes tumor
T2560 15-25 NN denotes suppressor
T2561 30-31 . denotes .
T2562 31-126 sentence denotes Somatic mutations in APC are frequently found in many sporadic tumors of the colon and rectum.
T2563 32-39 JJ denotes Somatic
T2564 40-49 NNS denotes mutations
T2565 72-77 VBN denotes found
T2566 50-52 IN denotes in
T2567 53-56 NN denotes APC
T2568 57-60 VBP denotes are
T2569 61-71 RB denotes frequently
T2570 78-80 IN denotes in
T2571 81-85 JJ denotes many
T2572 95-101 NNS denotes tumors
T2573 86-94 JJ denotes sporadic
T2574 102-104 IN denotes of
T2575 105-108 DT denotes the
T2576 109-114 NN denotes colon
T2577 115-118 CC denotes and
T2578 119-125 NN denotes rectum
T2579 125-126 . denotes .
T2580 126-248 sentence denotes Autosomal dominant germline mutations in APC cause familial adenomatous polypois (FAP) and its variant, Gardner syndrome.
T2581 127-136 JJ denotes Autosomal
T2582 155-164 NNS denotes mutations
T2583 137-145 JJ denotes dominant
T2584 146-154 NN denotes germline
T2585 172-177 VBP denotes cause
T2586 165-167 IN denotes in
T2587 168-171 NN denotes APC
T2588 178-186 JJ denotes familial
T2589 199-207 NN denotes polypois
T2590 187-198 JJ denotes adenomatous
T2591 208-209 -LRB- denotes (
T2592 209-212 NN denotes FAP
T2593 212-213 -RRB- denotes )
T2594 214-217 CC denotes and
T2595 218-221 PRP$ denotes its
T2596 222-229 NN denotes variant
T2597 229-231 , denotes ,
T2598 231-238 NNP denotes Gardner
T2599 239-247 NN denotes syndrome
T2600 247-248 . denotes .
T2601 248-431 sentence denotes FAP patients are characterized by hundreds of adenomatous colorectal polyps, with an almost inevitable progression to colorectal cancer in the third and fourth decades of life [4,5].
T2602 249-252 NN denotes FAP
T2603 253-261 NNS denotes patients
T2604 266-279 VBN denotes characterized
T2605 262-265 VBP denotes are
T2606 280-282 IN denotes by
T2607 283-291 NNS denotes hundreds
T2608 292-294 IN denotes of
T2609 295-306 JJ denotes adenomatous
T2610 318-324 NNS denotes polyps
T2611 307-317 JJ denotes colorectal
T2612 324-326 , denotes ,
T2613 326-330 IN denotes with
T2614 331-333 DT denotes an
T2615 352-363 NN denotes progression
T2616 334-340 RB denotes almost
T2617 341-351 JJ denotes inevitable
T2618 364-366 IN denotes to
T2619 367-377 JJ denotes colorectal
T2620 378-384 NN denotes cancer
T2621 385-387 IN denotes in
T2622 388-391 DT denotes the
T2623 409-416 NNS denotes decades
T2624 392-397 JJ denotes third
T2625 398-401 CC denotes and
T2626 402-408 JJ denotes fourth
T2627 417-419 IN denotes of
T2628 420-424 NN denotes life
T2629 425-426 -LRB- denotes [
T2630 428-429 CD denotes 5
T2631 426-427 CD denotes 4
T2632 427-428 , denotes ,
T2633 429-430 -RRB- denotes ]
T2634 430-431 . denotes .
T2635 431-796 sentence denotes In addition to colorectal neoplams, these individuals can develop extracolonic symptoms, among which are upper gastrointestinal tract polyps, congenital hypertrophy of the retinal pigment epithelium, desmoid tumors, disorders of the maxillary and skeletal bones, and dental abnormalities [6], suggesting the importance of APC gene functions in these organ systems.
T2636 432-434 IN denotes In
T2637 490-497 VB denotes develop
T2638 435-443 NN denotes addition
T2639 444-446 IN denotes to
T2640 447-457 JJ denotes colorectal
T2641 458-466 NNS denotes neoplams
T2642 466-468 , denotes ,
T2643 468-473 DT denotes these
T2644 474-485 NNS denotes individuals
T2645 486-489 MD denotes can
T2646 498-510 JJ denotes extracolonic
T2647 511-519 NNS denotes symptoms
T2648 519-521 , denotes ,
T2649 521-526 IN denotes among
T2650 533-536 VBP denotes are
T2651 527-532 WDT denotes which
T2652 537-542 JJ denotes upper
T2653 560-565 NN denotes tract
T2654 543-559 JJ denotes gastrointestinal
T2655 566-572 NNS denotes polyps
T2656 572-574 , denotes ,
T2657 574-584 JJ denotes congenital
T2658 585-596 NN denotes hypertrophy
T2659 597-599 IN denotes of
T2660 600-603 DT denotes the
T2661 620-630 NN denotes epithelium
T2662 604-611 JJ denotes retinal
T2663 612-619 NN denotes pigment
T2664 630-632 , denotes ,
T2665 632-639 JJ denotes desmoid
T2666 640-646 NNS denotes tumors
T2667 646-648 , denotes ,
T2668 648-657 NNS denotes disorders
T2669 658-660 IN denotes of
T2670 661-664 DT denotes the
T2671 688-693 NNS denotes bones
T2672 665-674 JJ denotes maxillary
T2673 675-678 CC denotes and
T2674 679-687 JJ denotes skeletal
T2675 693-695 , denotes ,
T2676 695-698 CC denotes and
T2677 699-705 JJ denotes dental
T2678 706-719 NNS denotes abnormalities
T2679 720-721 -LRB- denotes [
T2680 721-722 CD denotes 6
T2681 722-723 -RRB- denotes ]
T2682 723-725 , denotes ,
T2683 725-735 VBG denotes suggesting
T2684 736-739 DT denotes the
T2685 740-750 NN denotes importance
T2686 751-753 IN denotes of
T2687 754-757 NN denotes APC
T2688 758-762 NN denotes gene
T2689 763-772 VBZ denotes functions
T2690 773-775 IN denotes in
T2691 776-781 DT denotes these
T2692 788-795 NNS denotes systems
T2693 782-787 NN denotes organ
T2694 795-796 . denotes .
R428 T2555 T2556 nsubj APC,is
R429 T2557 T2558 det a,gene
R430 T2558 T2556 attr gene,is
R431 T2559 T2560 compound tumor,suppressor
R432 T2560 T2558 compound suppressor,gene
R433 T2561 T2556 punct .,is
R434 T2563 T2564 amod Somatic,mutations
R435 T2605 T2604 auxpass are,characterized
R436 T2564 T2565 nsubjpass mutations,found
R437 T2606 T2604 agent by,characterized
R438 T2607 T2606 pobj hundreds,by
R439 T2566 T2564 prep in,mutations
R440 T2608 T2607 prep of,hundreds
R441 T2609 T2610 amod adenomatous,polyps
R442 T2610 T2608 pobj polyps,of
R443 T2611 T2610 amod colorectal,polyps
R444 T2612 T2610 punct ", ",polyps
R445 T2613 T2610 prep with,polyps
R446 T2567 T2566 pobj APC,in
R447 T2614 T2615 det an,progression
R448 T2615 T2613 pobj progression,with
R449 T2616 T2617 advmod almost,inevitable
R450 T2617 T2615 amod inevitable,progression
R451 T2568 T2565 auxpass are,found
R452 T2618 T2615 prep to,progression
R453 T2619 T2620 amod colorectal,cancer
R454 T2620 T2618 pobj cancer,to
R455 T2569 T2565 advmod frequently,found
R456 T2621 T2615 prep in,progression
R457 T2622 T2623 det the,decades
R458 T2623 T2621 pobj decades,in
R459 T2570 T2565 prep in,found
R460 T2624 T2623 amod third,decades
R461 T2625 T2624 cc and,third
R462 T2626 T2624 conj fourth,third
R463 T2571 T2572 amod many,tumors
R464 T2627 T2623 prep of,decades
R465 T2628 T2627 pobj life,of
R466 T2629 T2630 punct [,5
R467 T2630 T2604 parataxis 5,characterized
R468 T2572 T2570 pobj tumors,in
R469 T2631 T2630 nummod 4,5
R470 T2632 T2630 punct ",",5
R471 T2633 T2630 punct ],5
R472 T2573 T2572 amod sporadic,tumors
R473 T2634 T2604 punct .,characterized
R474 T2574 T2572 prep of,tumors
R475 T2636 T2637 prep In,develop
R476 T2575 T2576 det the,colon
R477 T2638 T2636 pobj addition,In
R478 T2639 T2638 prep to,addition
R479 T2640 T2641 amod colorectal,neoplams
R480 T2641 T2639 pobj neoplams,to
R481 T2576 T2574 pobj colon,of
R482 T2642 T2637 punct ", ",develop
R483 T2643 T2644 det these,individuals
R484 T2644 T2637 nsubj individuals,develop
R485 T2577 T2576 cc and,colon
R486 T2645 T2637 aux can,develop
R487 T2646 T2647 amod extracolonic,symptoms
R488 T2647 T2637 dobj symptoms,develop
R489 T2648 T2647 punct ", ",symptoms
R490 T2578 T2576 conj rectum,colon
R491 T2649 T2650 prep among,are
R492 T2650 T2647 relcl are,symptoms
R493 T2579 T2565 punct .,found
R494 T2651 T2649 pobj which,among
R495 T2652 T2653 amod upper,tract
R496 T2653 T2655 compound tract,polyps
R497 T2654 T2653 amod gastrointestinal,tract
R498 T2655 T2650 nsubj polyps,are
R499 T2656 T2655 punct ", ",polyps
R500 T2657 T2658 amod congenital,hypertrophy
R501 T2581 T2582 amod Autosomal,mutations
R502 T2658 T2655 conj hypertrophy,polyps
R503 T2659 T2658 prep of,hypertrophy
R504 T2660 T2661 det the,epithelium
R505 T2661 T2659 pobj epithelium,of
R506 T2582 T2585 nsubj mutations,cause
R507 T2662 T2663 amod retinal,pigment
R508 T2663 T2661 compound pigment,epithelium
R509 T2664 T2658 punct ", ",hypertrophy
R510 T2583 T2582 amod dominant,mutations
R511 T2665 T2666 amod desmoid,tumors
R512 T2666 T2658 conj tumors,hypertrophy
R513 T2667 T2666 punct ", ",tumors
R514 T2584 T2582 compound germline,mutations
R515 T2668 T2666 conj disorders,tumors
R516 T2669 T2668 prep of,disorders
R517 T2670 T2671 det the,bones
R518 T2586 T2582 prep in,mutations
R519 T2587 T2586 pobj APC,in
R520 T2671 T2669 pobj bones,of
R521 T2672 T2671 amod maxillary,bones
R522 T2588 T2589 amod familial,polypois
R523 T2673 T2672 cc and,maxillary
R524 T2674 T2672 conj skeletal,maxillary
R525 T2675 T2668 punct ", ",disorders
R526 T2589 T2585 dobj polypois,cause
R527 T2676 T2668 cc and,disorders
R528 T2677 T2678 amod dental,abnormalities
R529 T2590 T2589 amod adenomatous,polypois
R530 T2678 T2668 conj abnormalities,disorders
R531 T2679 T2680 punct [,6
R532 T2680 T2650 parataxis 6,are
R533 T2591 T2589 punct (,polypois
R534 T2681 T2680 punct ],6
R535 T2682 T2650 punct ", ",are
R536 T2683 T2650 advcl suggesting,are
R537 T2592 T2589 appos FAP,polypois
R538 T2684 T2685 det the,importance
R539 T2685 T2683 dobj importance,suggesting
R540 T2686 T2685 prep of,importance
R541 T2593 T2589 punct ),polypois
R542 T2687 T2688 compound APC,gene
R543 T2688 T2686 pobj gene,of
R544 T2689 T2688 nmod functions,gene
R545 T2594 T2589 cc and,polypois
R546 T2690 T2685 prep in,importance
R547 T2691 T2692 det these,systems
R548 T2692 T2690 pobj systems,in
R549 T2693 T2692 compound organ,systems
R550 T2694 T2637 punct .,develop
R552 T2595 T2596 poss its,variant
R556 T2596 T2589 conj variant,polypois
R560 T2597 T2596 punct ", ",variant
R565 T2598 T2599 compound Gardner,syndrome
R568 T2599 T2596 appos syndrome,variant
R570 T2600 T2585 punct .,cause
R571 T2602 T2603 compound FAP,patients
R572 T2603 T2604 nsubjpass patients,characterized

2_test

Id Subject Object Predicate Lexical cue
17002498-8861899-85593493 426-427 8861899 denotes 4
17002498-1651174-85593494 428-429 1651174 denotes 5
17002498-16454848-85593495 721-722 16454848 denotes 6
T18617 426-427 8861899 denotes 4
T46649 428-429 1651174 denotes 5
T91666 721-722 16454848 denotes 6