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PMC:1564426 / 34582-35498 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T17126 16-22 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17127 23-29 UBERON:0002370 denotes thymus
T17128 43-60 UBERON:0003846 denotes thymic epithelial
T17129 116-127 CL:0000542 denotes lymphocytes
T17130 192-205 GO_PATO_EXT:cell_proliferation_or_proliferativity denotes Proliferative
T17131 244-254 CL:0000893 denotes thymocytes
T17132 287-293 UBERON:0002370 denotes thymus
T17133 303-313 UBERON:0000483 denotes epithelial
T17134 303-319 CL:0000066 denotes epithelial cells
T17135 314-319 CL_GO_EXT:cell denotes cells
T17136 405-411 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17137 412-417 UBERON:0002370 denotes thymi
T17138 433-439 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17139 440-446 UBERON:0002370 denotes thymus
T17140 464-467 PR_EXT:000009454 denotes K14
T17141 468-478 GO:0010467 denotes expression
T17142 500-502 PR_EXT:000009495 denotes K8
T17143 503-513 GO:0010467 denotes expression
T17144 533-538 CL_GO_EXT:cell denotes cells
T17145 554-565 CL:0000646 denotes basal cells
T17146 560-565 CL_GO_EXT:cell denotes cells
T17147 573-577 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T17148 583-587 CL:0002293 denotes TECs
T17149 635-640 CL_GO_EXT:cell denotes cells
T17150 666-673 GO:0005634 denotes nuclear
T17151 678-689 GO:0005737 denotes cytoplasmic
T17152 690-699 PR_EXT:000002198 denotes β-catenin
T17153 726-733 GO:0005634 denotes nuclear
T17154 746-755 PR_EXT:000002198 denotes β-catenin
T17155 799-805 UBERON:0002370 denotes thymus
T17156 837-840 PR_EXT:000009454 denotes K14
T17157 845-854 PR_EXT:000002198 denotes β-catenin

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T16917 23-29 UBERON:0002370 denotes thymus
T16918 43-60 UBERON:0003846 denotes thymic epithelial
T16919 116-127 CL:0000542 denotes lymphocytes
T16920 244-254 CL:0000893 denotes thymocytes
T16921 287-293 UBERON:0002370 denotes thymus
T16922 303-313 UBERON:0000483 denotes epithelial
T16923 303-319 CL:0000066 denotes epithelial cells
T16924 412-417 UBERON:0002370 denotes thymi
T16925 440-446 UBERON:0002370 denotes thymus
T16926 464-467 PR:000009454 denotes K14
T16927 468-478 GO:0010467 denotes expression
T16928 500-502 PR:000009495 denotes K8
T16929 503-513 GO:0010467 denotes expression
T16930 554-565 CL:0000646 denotes basal cells
T16931 583-587 CL:0002293 denotes TECs
T16932 666-673 GO:0005634 denotes nuclear
T16933 678-689 GO:0005737 denotes cytoplasmic
T16934 690-699 PR:000002198 denotes β-catenin
T16935 726-733 GO:0005634 denotes nuclear
T16936 746-755 PR:000002198 denotes β-catenin
T16937 799-805 UBERON:0002370 denotes thymus
T16938 837-840 PR:000009454 denotes K14
T16939 845-854 PR:000002198 denotes β-catenin

craft-sa-dev

Id Subject Object Predicate Lexical cue
T17883 0-2 IN denotes In
T17884 84-88 VBN denotes lost
T17885 3-6 DT denotes the
T17886 23-29 NN denotes thymus
T17887 7-12 JJ denotes other
T17888 13-15 NN denotes P3
T17889 16-22 JJ denotes mutant
T17890 30-33 DT denotes the
T17891 61-73 NNS denotes compartments
T17892 34-42 JJ denotes distinct
T17893 43-49 JJ denotes thymic
T17894 50-60 JJ denotes epithelial
T17895 74-78 VBP denotes have
T17896 79-83 VBN denotes been
T17897 89-99 RB denotes completely
T17898 99-101 , denotes ,
T17899 101-104 CC denotes and
T17900 105-109 RB denotes only
T17901 116-127 NNS denotes lymphocytes
T17902 110-111 DT denotes a
T17903 112-115 JJ denotes few
T17904 133-142 VBG denotes remaining
T17905 128-132 VBD denotes were
T17906 143-145 IN denotes at
T17907 146-149 DT denotes the
T17908 150-155 NNS denotes edges
T17909 156-159 CC denotes and
T17910 160-164 DT denotes some
T17911 165-167 IN denotes in
T17912 168-171 DT denotes the
T17913 172-178 JJ denotes middle
T17914 179-180 -LRB- denotes (
T17915 187-189 NN denotes 6H
T17916 180-186 NN denotes Figure
T17917 189-190 -RRB- denotes )
T17918 190-191 . denotes .
T17919 191-375 sentence denotes Proliferative activities were no longer observed in thymocytes as prominently as in the normal thymus, but the epithelial cells seemed to be forming concentric structures (Figure 6I).
T17920 192-205 JJ denotes Proliferative
T17921 206-216 NNS denotes activities
T17922 232-240 VBN denotes observed
T17923 217-221 VBD denotes were
T17924 222-224 RB denotes no
T17925 225-231 RBR denotes longer
T17926 241-243 IN denotes in
T17927 244-254 NNS denotes thymocytes
T17928 255-257 RB denotes as
T17929 258-269 RB denotes prominently
T17930 270-272 IN denotes as
T17931 273-275 IN denotes in
T17932 276-279 DT denotes the
T17933 287-293 NN denotes thymus
T17934 280-286 JJ denotes normal
T17935 293-295 , denotes ,
T17936 295-298 CC denotes but
T17937 299-302 DT denotes the
T17938 314-319 NNS denotes cells
T17939 303-313 JJ denotes epithelial
T17940 320-326 VBD denotes seemed
T17941 327-329 TO denotes to
T17942 333-340 VBG denotes forming
T17943 330-332 VB denotes be
T17944 341-351 JJ denotes concentric
T17945 352-362 NNS denotes structures
T17946 363-364 -LRB- denotes (
T17947 371-373 NN denotes 6I
T17948 364-370 NN denotes Figure
T17949 373-374 -RRB- denotes )
T17950 374-375 . denotes .
T17951 375-526 sentence denotes Unlike in the normal or mild mutant thymi, the severe P3 mutant thymus showed extensive K14 expression that overlapped with K8 expression (Figure 6K).
T17952 376-382 IN denotes Unlike
T17953 447-453 VBD denotes showed
T17954 383-385 IN denotes in
T17955 386-389 DT denotes the
T17956 412-417 NNS denotes thymi
T17957 390-396 JJ denotes normal
T17958 397-399 CC denotes or
T17959 400-404 JJ denotes mild
T17960 405-411 JJ denotes mutant
T17961 417-419 , denotes ,
T17962 419-422 DT denotes the
T17963 440-446 NN denotes thymus
T17964 423-429 JJ denotes severe
T17965 430-432 NN denotes P3
T17966 433-439 JJ denotes mutant
T17967 454-463 JJ denotes extensive
T17968 468-478 NN denotes expression
T17969 464-467 NN denotes K14
T17970 479-483 WDT denotes that
T17971 484-494 VBD denotes overlapped
T17972 495-499 IN denotes with
T17973 500-502 NN denotes K8
T17974 503-513 NN denotes expression
T17975 514-515 -LRB- denotes (
T17976 522-524 NN denotes 6K
T17977 515-521 NN denotes Figure
T17978 524-525 -RRB- denotes )
T17979 525-526 . denotes .
T17980 526-721 sentence denotes These cells were more like basal cells of the skin than TECs and were adjacent to the most immature looking cells that were showing strong nuclear and cytoplasmic β-catenin staining (Figure 6J).
T17981 527-532 DT denotes These
T17982 533-538 NNS denotes cells
T17983 539-543 VBD denotes were
T17984 544-548 RBR denotes more
T17985 549-553 IN denotes like
T17986 554-559 JJ denotes basal
T17987 560-565 NNS denotes cells
T17988 566-568 IN denotes of
T17989 569-572 DT denotes the
T17990 573-577 NN denotes skin
T17991 578-582 IN denotes than
T17992 583-587 NNS denotes TECs
T17993 588-591 CC denotes and
T17994 592-596 VBD denotes were
T17995 597-605 JJ denotes adjacent
T17996 606-608 IN denotes to
T17997 609-612 DT denotes the
T17998 635-640 NNS denotes cells
T17999 613-617 RBS denotes most
T18000 618-626 JJ denotes immature
T18001 627-634 VBG denotes looking
T18002 641-645 WDT denotes that
T18003 651-658 VBG denotes showing
T18004 646-650 VBD denotes were
T18005 659-665 JJ denotes strong
T18006 700-708 NN denotes staining
T18007 666-673 JJ denotes nuclear
T18008 674-677 CC denotes and
T18009 678-689 JJ denotes cytoplasmic
T18010 690-691 NN denotes β
T18011 692-699 NN denotes catenin
T18012 691-692 HYPH denotes -
T18013 709-710 -LRB- denotes (
T18014 717-719 NN denotes 6J
T18015 710-716 NN denotes Figure
T18016 719-720 -RRB- denotes )
T18017 720-721 . denotes .
T18018 721-818 sentence denotes The nuclear staining of β-catenin was not observed in the normal age-matched thymus (Figure 6C).
T18019 722-725 DT denotes The
T18020 734-742 NN denotes staining
T18021 726-733 JJ denotes nuclear
T18022 764-772 VBN denotes observed
T18023 743-745 IN denotes of
T18024 746-747 NN denotes β
T18025 748-755 NN denotes catenin
T18026 747-748 HYPH denotes -
T18027 756-759 VBD denotes was
T18028 760-763 RB denotes not
T18029 773-775 IN denotes in
T18030 776-779 DT denotes the
T18031 799-805 NN denotes thymus
T18032 780-786 JJ denotes normal
T18033 787-790 NN denotes age
T18034 791-798 JJ denotes matched
T18035 790-791 HYPH denotes -
T18036 806-807 -LRB- denotes (
T18037 814-816 NN denotes 6C
T18038 807-813 NN denotes Figure
T18039 816-817 -RRB- denotes )
T18040 817-818 . denotes .
T18041 818-916 sentence denotes Most notably, the K14 and β-catenin staining patterns were mutually exclusive (Figure 6J and 6K).
T18042 819-823 RBS denotes Most
T18043 824-831 RB denotes notably
T18044 873-877 VBD denotes were
T18045 831-833 , denotes ,
T18046 833-836 DT denotes the
T18047 864-872 NNS denotes patterns
T18048 837-840 NN denotes K14
T18049 841-844 CC denotes and
T18050 845-846 NN denotes β
T18051 847-854 NN denotes catenin
T18052 846-847 HYPH denotes -
T18053 855-863 NN denotes staining
T18054 878-886 RB denotes mutually
T18055 887-896 JJ denotes exclusive
T18056 897-898 -LRB- denotes (
T18057 905-907 NN denotes 6J
T18058 898-904 NN denotes Figure
T18059 908-911 CC denotes and
T18060 912-914 NN denotes 6K
T18061 914-915 -RRB- denotes )
T18062 915-916 . denotes .
R5162 T17883 T17884 prep In,lost
R5163 T17885 T17886 det the,thymus
R5164 T17886 T17883 pobj thymus,In
R5165 T17887 T17886 amod other,thymus
R5166 T17888 T17886 nmod P3,thymus
R5167 T17889 T17886 amod mutant,thymus
R5168 T17890 T17891 det the,compartments
R5169 T17891 T17884 nsubjpass compartments,lost
R5170 T17892 T17891 amod distinct,compartments
R5171 T17893 T17894 amod thymic,epithelial
R5172 T17894 T17891 amod epithelial,compartments
R5173 T17895 T17884 aux have,lost
R5174 T17896 T17884 auxpass been,lost
R5175 T17897 T17884 advmod completely,lost
R5176 T17898 T17884 punct ", ",lost
R5177 T17899 T17884 cc and,lost
R5178 T17900 T17901 advmod only,lymphocytes
R5179 T17901 T17904 nsubj lymphocytes,remaining
R5180 T17902 T17901 det a,lymphocytes
R5181 T17903 T17901 amod few,lymphocytes
R5182 T17904 T17884 conj remaining,lost
R5183 T17905 T17904 aux were,remaining
R5184 T17906 T17904 prep at,remaining
R5185 T17907 T17908 det the,edges
R5186 T17908 T17906 pobj edges,at
R5187 T17909 T17904 cc and,remaining
R5188 T17910 T17904 conj some,remaining
R5189 T17911 T17910 prep in,some
R5190 T17912 T17913 det the,middle
R5191 T17913 T17911 pobj middle,in
R5192 T17914 T17915 punct (,6H
R5193 T17915 T17910 parataxis 6H,some
R5194 T17916 T17915 compound Figure,6H
R5195 T17917 T17915 punct ),6H
R5196 T17918 T17904 punct .,remaining
R5197 T17920 T17921 amod Proliferative,activities
R5198 T17921 T17922 nsubjpass activities,observed
R5199 T17923 T17922 auxpass were,observed
R5200 T17924 T17925 neg no,longer
R5201 T17925 T17922 advmod longer,observed
R5202 T17926 T17922 prep in,observed
R5203 T17927 T17926 pobj thymocytes,in
R5204 T17928 T17929 advmod as,prominently
R5205 T17929 T17922 advmod prominently,observed
R5206 T17930 T17929 prep as,prominently
R5207 T17931 T17930 prep in,as
R5208 T17932 T17933 det the,thymus
R5209 T17933 T17931 pobj thymus,in
R5210 T17934 T17933 amod normal,thymus
R5211 T17935 T17922 punct ", ",observed
R5212 T17936 T17922 cc but,observed
R5213 T17937 T17938 det the,cells
R5214 T17938 T17940 nsubj cells,seemed
R5215 T17939 T17938 amod epithelial,cells
R5216 T17940 T17922 conj seemed,observed
R5217 T17941 T17942 aux to,forming
R5218 T17942 T17940 xcomp forming,seemed
R5219 T17943 T17942 aux be,forming
R5220 T17944 T17945 amod concentric,structures
R5221 T17945 T17942 dobj structures,forming
R5222 T17946 T17947 punct (,6I
R5223 T17947 T17942 parataxis 6I,forming
R5224 T17948 T17947 compound Figure,6I
R5225 T17949 T17947 punct ),6I
R5226 T17950 T17940 punct .,seemed
R5227 T17952 T17953 prep Unlike,showed
R5228 T17954 T17952 prep in,Unlike
R5229 T17955 T17956 det the,thymi
R5230 T17956 T17954 pobj thymi,in
R5231 T17957 T17956 amod normal,thymi
R5232 T17958 T17957 cc or,normal
R5233 T17959 T17957 conj mild,normal
R5234 T17960 T17956 amod mutant,thymi
R5235 T17961 T17953 punct ", ",showed
R5236 T17962 T17963 det the,thymus
R5237 T17963 T17953 nsubj thymus,showed
R5238 T17964 T17963 amod severe,thymus
R5239 T17965 T17963 nmod P3,thymus
R5240 T17966 T17963 amod mutant,thymus
R5241 T17967 T17968 amod extensive,expression
R5242 T17968 T17953 dobj expression,showed
R5243 T17969 T17968 compound K14,expression
R5244 T17970 T17971 dep that,overlapped
R5245 T17971 T17968 relcl overlapped,expression
R5246 T17972 T17971 prep with,overlapped
R5247 T17973 T17974 compound K8,expression
R5248 T17974 T17972 pobj expression,with
R5249 T17975 T17976 punct (,6K
R5250 T17976 T17953 parataxis 6K,showed
R5251 T17977 T17976 compound Figure,6K
R5252 T17978 T17976 punct ),6K
R5253 T17979 T17953 punct .,showed
R5254 T17981 T17982 det These,cells
R5255 T17982 T17983 nsubj cells,were
R5256 T17984 T17985 advmod more,like
R5257 T17985 T17983 prep like,were
R5258 T17986 T17987 amod basal,cells
R5259 T17987 T17985 pobj cells,like
R5260 T17988 T17987 prep of,cells
R5261 T17989 T17990 det the,skin
R5262 T17990 T17988 pobj skin,of
R5263 T17991 T17983 prep than,were
R5264 T17992 T17991 pobj TECs,than
R5265 T17993 T17983 cc and,were
R5266 T17994 T17983 conj were,were
R5267 T17995 T17994 acomp adjacent,were
R5268 T17996 T17995 prep to,adjacent
R5269 T17997 T17998 det the,cells
R5270 T17998 T17996 pobj cells,to
R5271 T17999 T18000 advmod most,immature
R5272 T18000 T17998 amod immature,cells
R5273 T18001 T17998 amod looking,cells
R5274 T18002 T18003 dep that,showing
R5275 T18003 T17998 relcl showing,cells
R5276 T18004 T18003 aux were,showing
R5277 T18005 T18006 amod strong,staining
R5278 T18006 T18003 dobj staining,showing
R5279 T18007 T18006 amod nuclear,staining
R5280 T18008 T18007 cc and,nuclear
R5281 T18009 T18007 conj cytoplasmic,nuclear
R5282 T18010 T18011 compound β,catenin
R5283 T18011 T18006 compound catenin,staining
R5284 T18012 T18011 punct -,catenin
R5285 T18013 T18014 punct (,6J
R5286 T18014 T17994 parataxis 6J,were
R5287 T18015 T18014 compound Figure,6J
R5288 T18016 T18014 punct ),6J
R5289 T18017 T17983 punct .,were
R5290 T18019 T18020 det The,staining
R5291 T18020 T18022 nsubjpass staining,observed
R5292 T18021 T18020 amod nuclear,staining
R5293 T18023 T18020 prep of,staining
R5294 T18024 T18025 compound β,catenin
R5295 T18025 T18023 pobj catenin,of
R5296 T18026 T18025 punct -,catenin
R5297 T18027 T18022 auxpass was,observed
R5298 T18028 T18022 neg not,observed
R5299 T18029 T18022 prep in,observed
R5300 T18030 T18031 det the,thymus
R5301 T18031 T18029 pobj thymus,in
R5302 T18032 T18031 amod normal,thymus
R5303 T18033 T18034 npadvmod age,matched
R5304 T18034 T18031 amod matched,thymus
R5305 T18035 T18034 punct -,matched
R5306 T18036 T18037 punct (,6C
R5307 T18037 T18022 parataxis 6C,observed
R5308 T18038 T18037 compound Figure,6C
R5309 T18039 T18037 punct ),6C
R5310 T18040 T18022 punct .,observed
R5311 T18042 T18043 advmod Most,notably
R5312 T18043 T18044 advmod notably,were
R5313 T18045 T18044 punct ", ",were
R5314 T18046 T18047 det the,patterns
R5315 T18047 T18044 nsubj patterns,were
R5316 T18048 T18047 nmod K14,patterns
R5317 T18049 T18048 cc and,K14
R5318 T18050 T18051 compound β,catenin
R5319 T18051 T18048 conj catenin,K14
R5320 T18052 T18051 punct -,catenin
R5321 T18053 T18047 compound staining,patterns
R5322 T18054 T18055 advmod mutually,exclusive
R5323 T18055 T18044 acomp exclusive,were
R5324 T18056 T18057 punct (,6J
R5325 T18057 T18044 parataxis 6J,were
R5326 T18058 T18057 compound Figure,6J
R5327 T18059 T18057 cc and,6J
R5328 T18060 T18057 conj 6K,6J
R5329 T18061 T18057 punct ),6J
R5330 T18062 T18044 punct .,were