> top > docs > PMC:1540739 > spans > 9557-9744 > annotations

PMC:1540739 / 9557-9744 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T5887 0-187 sentence denotes We verified the sequence from the mutated plasmid, then digested it with BamHI and EcoRI, to insert in frame GFP sequences from a Bam HI-EcoRI fragment of plasmid phr-GFP-1 (Stratagene).
T5888 1-3 PRP denotes We
T5889 4-12 VBD denotes verified
T5890 13-16 DT denotes the
T5891 17-25 NN denotes sequence
T5892 26-30 IN denotes from
T5893 31-34 DT denotes the
T5894 43-50 NN denotes plasmid
T5895 35-42 VBN denotes mutated
T5896 50-52 , denotes ,
T5897 52-56 RB denotes then
T5898 57-65 VBD denotes digested
T5899 66-68 PRP denotes it
T5900 69-73 IN denotes with
T5901 74-79 NN denotes BamHI
T5902 80-83 CC denotes and
T5903 84-89 NN denotes EcoRI
T5904 89-91 , denotes ,
T5905 91-93 TO denotes to
T5906 94-100 VB denotes insert
T5907 101-103 IN denotes in
T5908 104-109 NN denotes frame
T5909 110-113 NN denotes GFP
T5910 114-123 NNS denotes sequences
T5911 124-128 IN denotes from
T5912 129-130 DT denotes a
T5913 144-152 NN denotes fragment
T5914 131-134 NN denotes Bam
T5915 138-143 NN denotes EcoRI
T5916 135-137 NN denotes HI
T5917 137-138 HYPH denotes -
T5918 153-155 IN denotes of
T5919 156-163 NN denotes plasmid
T5920 168-171 NN denotes GFP
T5921 164-167 NN denotes phr
T5922 167-168 HYPH denotes -
T5923 171-172 HYPH denotes -
T5924 172-173 CD denotes 1
T5925 174-175 -LRB- denotes (
T5926 175-185 NNP denotes Stratagene
T5927 185-186 -RRB- denotes )
T5928 186-187 . denotes .
R1748 T5888 T5889 nsubj We,verified
R1749 T5890 T5891 det the,sequence
R1750 T5891 T5889 dobj sequence,verified
R1751 T5892 T5891 prep from,sequence
R1752 T5893 T5894 det the,plasmid
R1753 T5894 T5892 pobj plasmid,from
R1754 T5895 T5894 amod mutated,plasmid
R1755 T5896 T5889 punct ", ",verified
R1756 T5897 T5898 advmod then,digested
R1757 T5898 T5889 dep digested,verified
R1758 T5899 T5898 dobj it,digested
R1759 T5900 T5898 prep with,digested
R1760 T5901 T5900 pobj BamHI,with
R1761 T5902 T5901 cc and,BamHI
R1762 T5903 T5901 conj EcoRI,BamHI
R1763 T5904 T5889 punct ", ",verified
R1764 T5905 T5906 aux to,insert
R1765 T5906 T5889 advcl insert,verified
R1766 T5907 T5906 prep in,insert
R1767 T5908 T5909 compound frame,GFP
R1768 T5909 T5910 compound GFP,sequences
R1769 T5910 T5907 pobj sequences,in
R1770 T5911 T5910 prep from,sequences
R1771 T5912 T5913 det a,fragment
R1772 T5913 T5911 pobj fragment,from
R1773 T5914 T5915 compound Bam,EcoRI
R1774 T5915 T5913 compound EcoRI,fragment
R1775 T5916 T5915 compound HI,EcoRI
R1776 T5917 T5915 punct -,EcoRI
R1777 T5918 T5913 prep of,fragment
R1778 T5919 T5920 compound plasmid,GFP
R1779 T5920 T5918 pobj GFP,of
R1780 T5921 T5920 compound phr,GFP
R1781 T5922 T5920 punct -,GFP
R1782 T5923 T5920 punct -,GFP
R1783 T5924 T5920 nummod 1,GFP
R1784 T5925 T5926 punct (,Stratagene
R1785 T5926 T5913 parataxis Stratagene,fragment
R1786 T5927 T5926 punct ),Stratagene
R1787 T5928 T5889 punct .,verified

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5723 17-25 SO_EXT:biological_sequence denotes sequence
T5724 35-42 SO_EXT:sequence_alteration_process denotes mutated
T5725 43-50 SO_EXT:0000155 denotes plasmid
T5726 74-79 PR_EXT:P23940 denotes BamHI
T5727 94-100 SO_EXT:sequence_insertion_process denotes insert
T5728 101-109 SO:0001817 denotes in frame
T5729 114-123 SO_EXT:biological_sequence denotes sequences
T5730 131-137 PR_EXT:P23940 denotes Bam HI
T5731 156-163 SO_EXT:0000155 denotes plasmid

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5684 43-50 SO:0000155 denotes plasmid
T5685 74-79 PR:P23940 denotes BamHI
T5686 101-109 SO:0001817 denotes in frame
T5687 131-137 PR:P23940 denotes Bam HI
T5688 156-163 SO:0000155 denotes plasmid