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PMC:1540739 / 7025-7287 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4801 0-262 sentence denotes We next modified a puroΔTK plasmid (YTC37, a kind gift from A. Bradley) by using oligonucleotides to destroy a NotI site downstream of the puroΔTK gene and introduce a NotI site upstream, and a FseI site downstream of the gene (leading to plasmid CN-PuroΔTK-F).
T4802 1-3 PRP denotes We
T4803 9-17 VBD denotes modified
T4804 4-8 RB denotes next
T4805 18-19 DT denotes a
T4806 28-35 NN denotes plasmid
T4807 20-27 NN denotes puroΔTK
T4808 36-37 -LRB- denotes (
T4809 37-42 NN denotes YTC37
T4810 42-44 , denotes ,
T4811 44-45 DT denotes a
T4812 51-55 NN denotes gift
T4813 46-50 NN denotes kind
T4814 56-60 IN denotes from
T4815 61-63 NNP denotes A.
T4816 64-71 NNP denotes Bradley
T4817 71-72 -RRB- denotes )
T4818 73-75 IN denotes by
T4819 76-81 VBG denotes using
T4820 82-98 NNS denotes oligonucleotides
T4821 99-101 TO denotes to
T4822 102-109 VB denotes destroy
T4823 110-111 DT denotes a
T4824 117-121 NN denotes site
T4825 112-116 NN denotes NotI
T4826 122-132 RB denotes downstream
T4827 133-135 IN denotes of
T4828 136-139 DT denotes the
T4829 148-152 NN denotes gene
T4830 140-147 NN denotes puroΔTK
T4831 153-156 CC denotes and
T4832 157-166 VB denotes introduce
T4833 167-168 DT denotes a
T4834 174-178 NN denotes site
T4835 169-173 NN denotes NotI
T4836 179-187 RB denotes upstream
T4837 187-189 , denotes ,
T4838 189-192 CC denotes and
T4839 193-194 DT denotes a
T4840 200-204 NN denotes site
T4841 195-199 NN denotes FseI
T4842 205-215 RB denotes downstream
T4843 216-218 IN denotes of
T4844 219-222 DT denotes the
T4845 223-227 NN denotes gene
T4846 228-229 -LRB- denotes (
T4847 229-236 VBG denotes leading
T4848 237-239 IN denotes to
T4849 240-247 NN denotes plasmid
T4850 259-260 NN denotes F
T4851 248-250 NN denotes CN
T4852 250-251 HYPH denotes -
T4853 251-258 NN denotes PuroΔTK
T4854 258-259 HYPH denotes -
T4855 260-261 -RRB- denotes )
T4856 261-262 . denotes .
R1229 T4802 T4803 nsubj We,modified
R1230 T4804 T4803 advmod next,modified
R1231 T4805 T4806 det a,plasmid
R1232 T4806 T4803 dobj plasmid,modified
R1233 T4807 T4806 compound puroΔTK,plasmid
R1234 T4808 T4806 punct (,plasmid
R1235 T4809 T4806 appos YTC37,plasmid
R1236 T4810 T4809 punct ", ",YTC37
R1237 T4811 T4812 det a,gift
R1238 T4812 T4809 appos gift,YTC37
R1239 T4813 T4812 compound kind,gift
R1240 T4814 T4812 prep from,gift
R1241 T4815 T4816 compound A.,Bradley
R1242 T4816 T4814 pobj Bradley,from
R1243 T4817 T4803 punct ),modified
R1244 T4818 T4803 prep by,modified
R1245 T4819 T4818 pcomp using,by
R1246 T4820 T4819 dobj oligonucleotides,using
R1247 T4821 T4822 aux to,destroy
R1248 T4822 T4819 advcl destroy,using
R1249 T4823 T4824 det a,site
R1250 T4824 T4822 dobj site,destroy
R1251 T4825 T4824 compound NotI,site
R1252 T4826 T4824 advmod downstream,site
R1253 T4827 T4826 prep of,downstream
R1254 T4828 T4829 det the,gene
R1255 T4829 T4827 pobj gene,of
R1256 T4830 T4829 compound puroΔTK,gene
R1257 T4831 T4822 cc and,destroy
R1258 T4832 T4822 conj introduce,destroy
R1259 T4833 T4834 det a,site
R1260 T4834 T4832 dobj site,introduce
R1261 T4835 T4834 compound NotI,site
R1262 T4836 T4832 advmod upstream,introduce
R1263 T4837 T4832 punct ", ",introduce
R1264 T4838 T4832 cc and,introduce
R1265 T4839 T4840 det a,site
R1266 T4840 T4832 conj site,introduce
R1267 T4841 T4840 compound FseI,site
R1268 T4842 T4840 advmod downstream,site
R1269 T4843 T4842 prep of,downstream
R1270 T4844 T4845 det the,gene
R1271 T4845 T4843 pobj gene,of
R1272 T4846 T4847 punct (,leading
R1273 T4847 T4840 parataxis leading,site
R1274 T4848 T4847 prep to,leading
R1275 T4849 T4850 compound plasmid,F
R1276 T4850 T4848 pobj F,to
R1277 T4851 T4850 compound CN,F
R1278 T4852 T4850 punct -,F
R1279 T4853 T4850 compound PuroΔTK,F
R1280 T4854 T4850 punct -,F
R1281 T4855 T4847 punct ),leading
R1282 T4856 T4803 punct .,modified

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4553 9-17 SO_EXT:sequence_alteration_process denotes modified
T4554 28-35 SO_EXT:0000155 denotes plasmid
T4555 82-98 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T4556 122-132 SO_EXT:sequence_downstreamness denotes downstream
T4557 148-152 SO_EXT:0000704 denotes gene
T4558 179-187 SO_EXT:sequence_upstreamness denotes upstream
T4559 205-215 SO_EXT:sequence_downstreamness denotes downstream
T4560 223-227 SO_EXT:0000704 denotes gene
T4561 240-247 SO_EXT:0000155 denotes plasmid

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4490 28-35 SO:0000155 denotes plasmid
T4491 148-152 SO:0000704 denotes gene
T4492 223-227 SO:0000704 denotes gene
T4493 240-247 SO:0000155 denotes plasmid