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PMC:1540739 / 11762-12216 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7198 0-1 DT denotes A
T7199 2-7 NN denotes total
T7200 43-48 VBN denotes grown
T7201 8-10 IN denotes of
T7202 11-12 CD denotes 8
T7203 15-18 CD denotes 105
T7204 13-14 HYPH denotes ×
T7205 32-37 NNS denotes cells
T7206 19-26 NN denotes p53RMCE
T7207 26-27 HYPH denotes /
T7208 27-28 SYM denotes +
T7209 29-31 NN denotes ES
T7210 38-42 VBD denotes were
T7211 49-56 IN denotes without
T7212 57-66 NN denotes puromycin
T7213 67-70 IN denotes for
T7214 71-73 CD denotes 12
T7215 74-75 NN denotes h
T7216 75-77 , denotes ,
T7217 77-91 VBN denotes electroporated
T7218 92-96 IN denotes with
T7219 97-99 CD denotes 15
T7220 111-118 NN denotes plasmid
T7221 100-102 NN denotes μg
T7222 103-106 NN denotes CMV
T7223 107-110 NN denotes Cre
T7224 106-107 HYPH denotes -
T7225 119-120 -LRB- denotes (
T7226 120-126 NN denotes pOG231
T7227 126-127 -RRB- denotes )
T7228 128-131 CC denotes and
T7229 132-135 CD denotes 200
T7230 136-138 NN denotes μg
T7231 139-141 IN denotes of
T7232 142-145 DT denotes the
T7233 155-164 NN denotes construct
T7234 146-154 NN denotes exchange
T7235 164-166 , denotes ,
T7236 166-169 CC denotes and
T7237 170-176 VBN denotes plated
T7238 177-179 IN denotes in
T7239 180-183 NN denotes T25
T7240 184-190 NNS denotes flasks
T7241 191-193 IN denotes at
T7242 194-197 CD denotes 105
T7243 198-203 NNS denotes cells
T7244 204-207 IN denotes per
T7245 208-213 NN denotes flask
T7246 213-214 . denotes .
T7247 214-275 sentence denotes FIAU was added to the medium 3–4 days after electroporation.
T7248 215-219 NN denotes FIAU
T7249 224-229 VBN denotes added
T7250 220-223 VBD denotes was
T7251 230-232 IN denotes to
T7252 233-236 DT denotes the
T7253 237-243 NN denotes medium
T7254 244-245 CD denotes 3
T7255 246-247 CD denotes 4
T7256 245-246 HYPH denotes –
T7257 248-252 NNS denotes days
T7258 253-258 IN denotes after
T7259 259-274 NN denotes electroporation
T7260 274-275 . denotes .
T7261 275-454 sentence denotes Individual clones, picked 10 days after electroporation, were grown in 96-well plates and expanded to generate duplicate plates for freezing and DNA analysis by PCR and Southern.
T7262 276-286 JJ denotes Individual
T7263 287-293 NNS denotes clones
T7264 338-343 VBN denotes grown
T7265 293-295 , denotes ,
T7266 295-301 VBN denotes picked
T7267 302-304 CD denotes 10
T7268 305-309 NNS denotes days
T7269 310-315 IN denotes after
T7270 316-331 NN denotes electroporation
T7271 331-333 , denotes ,
T7272 333-337 VBD denotes were
T7273 344-346 IN denotes in
T7274 347-349 CD denotes 96
T7275 350-354 NN denotes well
T7276 349-350 HYPH denotes -
T7277 355-361 NNS denotes plates
T7278 362-365 CC denotes and
T7279 366-374 VBN denotes expanded
T7280 375-377 TO denotes to
T7281 378-386 VB denotes generate
T7282 387-396 JJ denotes duplicate
T7283 397-403 NNS denotes plates
T7284 404-407 IN denotes for
T7285 408-416 VBG denotes freezing
T7286 417-420 CC denotes and
T7287 421-424 NN denotes DNA
T7288 425-433 NN denotes analysis
T7289 434-436 IN denotes by
T7290 437-440 NN denotes PCR
T7291 441-444 CC denotes and
T7292 445-453 NNP denotes Southern
T7293 453-454 . denotes .
R2187 T7198 T7199 det A,total
R2188 T7199 T7200 nsubjpass total,grown
R2189 T7201 T7199 prep of,total
R2190 T7202 T7203 compound 8,105
R2191 T7203 T7205 nummod 105,cells
R2192 T7204 T7203 punct ×,105
R2193 T7205 T7201 pobj cells,of
R2194 T7206 T7205 nmod p53RMCE,cells
R2195 T7207 T7206 punct /,p53RMCE
R2196 T7208 T7206 punct +,p53RMCE
R2197 T7209 T7205 compound ES,cells
R2198 T7210 T7200 auxpass were,grown
R2199 T7211 T7200 prep without,grown
R2200 T7212 T7211 pobj puromycin,without
R2201 T7213 T7200 prep for,grown
R2202 T7214 T7215 nummod 12,h
R2203 T7215 T7213 pobj h,for
R2204 T7216 T7200 punct ", ",grown
R2205 T7217 T7200 conj electroporated,grown
R2206 T7218 T7217 prep with,electroporated
R2207 T7219 T7220 nummod 15,plasmid
R2208 T7220 T7218 pobj plasmid,with
R2209 T7221 T7220 compound μg,plasmid
R2210 T7222 T7223 compound CMV,Cre
R2211 T7223 T7220 compound Cre,plasmid
R2212 T7224 T7223 punct -,Cre
R2213 T7225 T7226 punct (,pOG231
R2214 T7226 T7220 parataxis pOG231,plasmid
R2215 T7227 T7226 punct ),pOG231
R2216 T7228 T7220 cc and,plasmid
R2217 T7229 T7230 nummod 200,μg
R2218 T7230 T7220 conj μg,plasmid
R2219 T7231 T7230 prep of,μg
R2220 T7232 T7233 det the,construct
R2221 T7233 T7231 pobj construct,of
R2222 T7234 T7233 compound exchange,construct
R2223 T7235 T7217 punct ", ",electroporated
R2224 T7236 T7217 cc and,electroporated
R2225 T7237 T7217 conj plated,electroporated
R2226 T7238 T7237 prep in,plated
R2227 T7239 T7240 compound T25,flasks
R2228 T7240 T7238 pobj flasks,in
R2229 T7241 T7237 prep at,plated
R2230 T7242 T7243 nummod 105,cells
R2231 T7243 T7241 pobj cells,at
R2232 T7244 T7243 prep per,cells
R2233 T7245 T7244 pobj flask,per
R2234 T7246 T7200 punct .,grown
R2235 T7248 T7249 nsubjpass FIAU,added
R2236 T7250 T7249 auxpass was,added
R2237 T7251 T7249 prep to,added
R2238 T7252 T7253 det the,medium
R2239 T7253 T7251 pobj medium,to
R2240 T7254 T7255 compound 3,4
R2241 T7255 T7257 nummod 4,days
R2242 T7256 T7255 punct –,4
R2243 T7257 T7258 npadvmod days,after
R2244 T7258 T7249 prep after,added
R2245 T7259 T7258 pobj electroporation,after
R2246 T7260 T7249 punct .,added
R2247 T7262 T7263 amod Individual,clones
R2248 T7263 T7264 nsubjpass clones,grown
R2249 T7265 T7263 punct ", ",clones
R2250 T7266 T7263 acl picked,clones
R2251 T7267 T7268 nummod 10,days
R2252 T7268 T7266 npadvmod days,picked
R2253 T7269 T7268 prep after,days
R2254 T7270 T7269 pobj electroporation,after
R2255 T7271 T7264 punct ", ",grown
R2256 T7272 T7264 auxpass were,grown
R2257 T7273 T7264 prep in,grown
R2258 T7274 T7275 nummod 96,well
R2259 T7275 T7277 compound well,plates
R2260 T7276 T7275 punct -,well
R2261 T7277 T7273 pobj plates,in
R2262 T7278 T7264 cc and,grown
R2263 T7279 T7264 conj expanded,grown
R2264 T7280 T7281 aux to,generate
R2265 T7281 T7279 advcl generate,expanded
R2266 T7282 T7283 amod duplicate,plates
R2267 T7283 T7281 dobj plates,generate
R2268 T7284 T7283 prep for,plates
R2269 T7285 T7284 pobj freezing,for
R2270 T7286 T7285 cc and,freezing
R2271 T7287 T7288 compound DNA,analysis
R2272 T7288 T7285 conj analysis,freezing
R2273 T7289 T7281 prep by,generate
R2274 T7290 T7289 pobj PCR,by
R2275 T7291 T7290 cc and,PCR
R2276 T7292 T7290 conj Southern,PCR
R2277 T7293 T7264 punct .,grown

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7178 19-22 PR_EXT:000003035 denotes p53
T7179 27-28 SO_EXT:normal_or_wild_type_or_present denotes +
T7180 29-37 CL:0002322 denotes ES cells
T7181 32-37 CL_GO_EXT:cell denotes cells
T7182 43-48 GO:0040007 denotes grown
T7183 57-66 CHEBI:17939 denotes puromycin
T7184 103-106 NCBITaxon:10358 denotes CMV
T7185 111-118 SO_EXT:0000155 denotes plasmid
T7186 146-154 SO_EXT:sequence_substitution_process denotes exchange
T7187 155-164 SO_EXT:engineered_biological_sequence denotes construct
T7188 198-203 CL_GO_EXT:cell denotes cells
T7189 287-293 SO_EXT:sequence_cloned_entity denotes clones
T7190 338-343 GO:0040007 denotes grown
T7191 421-424 CHEBI_SO_EXT:DNA denotes DNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7169 19-22 PR:000003035 denotes p53
T7170 29-37 CL:0002322 denotes ES cells
T7171 43-48 GO:0040007 denotes grown
T7172 57-66 CHEBI:17939 denotes puromycin
T7173 103-106 NCBITaxon:10358 denotes CMV
T7174 111-118 SO:0000155 denotes plasmid
T7175 338-343 GO:0040007 denotes grown