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PMC:1540739 / 10241-11040 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6359 0-1 LS denotes a
T6360 6-30 NN denotes CCCCGGCCCTCACCCTCATCTTCG
T6361 1-3 : denotes :
T6362 3-4 CD denotes 5
T6363 4-5 SYM denotes ′
T6364 5-6 HYPH denotes -
T6365 586-593 VBP denotes amplify
T6366 30-31 HYPH denotes -
T6367 31-32 CD denotes 3
T6368 32-33 SYM denotes ′
T6369 33-35 , denotes ,
T6370 35-39 IN denotes from
T6371 40-43 DT denotes the
T6372 50-54 NN denotes gene
T6373 44-49 NN denotes PuΔTK
T6374 54-56 , denotes ,
T6375 56-62 NNS denotes assays
T6376 63-72 VBG denotes targeting
T6377 73-75 IN denotes of
T6378 76-80 NN denotes Flox
T6379 81-88 NN denotes plasmid
T6380 88-89 : denotes ;
T6381 90-91 LS denotes b
T6382 96-120 NN denotes AACAAAACAAAACAGCAGCAACAA
T6383 91-93 : denotes :
T6384 93-94 CD denotes 5
T6385 94-95 SYM denotes ′
T6386 95-96 HYPH denotes -
T6387 120-121 HYPH denotes -
T6388 121-122 CD denotes 3
T6389 122-123 SYM denotes ′
T6390 123-125 , denotes ,
T6391 125-129 IN denotes from
T6392 130-139 NNS denotes sequences
T6393 140-150 RB denotes downstream
T6394 171-178 IN denotes outside
T6395 151-153 IN denotes of
T6396 154-157 DT denotes the
T6397 162-166 NN denotes gene
T6398 158-161 NN denotes p53
T6399 167-170 CC denotes and
T6400 179-183 NN denotes Flox
T6401 184-193 NNS denotes sequences
T6402 193-195 , denotes ,
T6403 195-201 NNS denotes assays
T6404 202-211 VBG denotes targeting
T6405 212-214 IN denotes of
T6406 215-219 NN denotes Flox
T6407 220-223 CC denotes and
T6408 224-228 NN denotes RMCE
T6409 229-233 IN denotes with
T6410 234-240 NN denotes p53GFP
T6411 253-261 NNS denotes plasmids
T6412 241-243 CC denotes or
T6413 244-252 NN denotes p53ΔPGFP
T6414 261-262 : denotes ;
T6415 263-264 LS denotes c
T6416 269-294 NN denotes TGAAGAGCAAGGGCGTGGTGAAGGA
T6417 264-266 : denotes :
T6418 266-267 CD denotes 5
T6419 267-268 SYM denotes ′
T6420 268-269 HYPH denotes -
T6421 294-295 HYPH denotes -
T6422 295-296 CD denotes 3
T6423 296-297 SYM denotes ′
T6424 297-299 , denotes ,
T6425 299-303 IN denotes from
T6426 304-307 NN denotes GFP
T6427 308-317 NNS denotes sequences
T6428 317-319 , denotes ,
T6429 319-325 NNS denotes assays
T6430 326-330 NN denotes RMCE
T6431 331-335 IN denotes with
T6432 336-342 NN denotes p53GFP
T6433 343-353 NN denotes orp53ΔPGFP
T6434 354-362 NNS denotes plasmids
T6435 362-363 : denotes ;
T6436 364-365 LS denotes d
T6437 370-398 NN denotes CAAAAAATGGAAGGAAATCAGGAACTAA
T6438 365-367 : denotes :
T6439 367-368 CD denotes 5
T6440 368-369 SYM denotes ′
T6441 369-370 HYPH denotes -
T6442 398-399 HYPH denotes -
T6443 399-400 CD denotes 3
T6444 400-401 SYM denotes ′
T6445 401-403 , denotes ,
T6446 403-407 IN denotes from
T6447 408-411 NN denotes p53
T6448 412-418 NN denotes intron
T6449 419-420 CD denotes 3
T6450 420-422 , denotes ,
T6451 422-425 CC denotes and
T6452 426-427 LS denotes e
T6453 432-457 NN denotes TCTAGACAGAGAAAAAAGAGGCATT
T6454 427-429 : denotes :
T6455 429-430 CD denotes 5
T6456 430-431 SYM denotes ′
T6457 431-432 HYPH denotes -
T6458 457-458 HYPH denotes -
T6459 458-459 CD denotes 3
T6460 459-460 SYM denotes ′
T6461 460-462 , denotes ,
T6462 462-466 IN denotes from
T6463 467-470 NN denotes p53
T6464 471-477 NN denotes intron
T6465 478-479 CD denotes 4
T6466 479-481 , denotes ,
T6467 481-486 NN denotes assay
T6468 487-491 NN denotes RMCE
T6469 492-496 IN denotes with
T6470 497-505 NN denotes p53ΔPGFP
T6471 506-513 NN denotes plasmid
T6472 513-514 : denotes ;
T6473 515-516 LS denotes f
T6474 521-545 NN denotes ATGGGAGGCTGCCAGTCCTAACCC
T6475 516-518 : denotes :
T6476 518-519 CD denotes 5
T6477 519-520 SYM denotes ′
T6478 520-521 HYPH denotes -
T6479 546-549 CC denotes and
T6480 550-551 LS denotes g
T6481 556-582 NN denotes GTGTTTCATTAGTTCCCCACCTTGAC
T6482 551-553 : denotes :
T6483 553-554 CD denotes 5
T6484 554-555 SYM denotes ′
T6485 555-556 HYPH denotes -
T6486 582-583 HYPH denotes -
T6487 583-584 CD denotes 3
T6488 584-585 SYM denotes ′
T6489 721-728 VBP denotes amplify
T6490 594-597 DT denotes the
T6491 605-611 NN denotes allele
T6492 598-600 NN denotes WT
T6493 601-604 NN denotes p53
T6494 612-621 IN denotes according
T6495 622-624 IN denotes to
T6496 625-632 NNP denotes Taconic
T6497 635-645 NNS denotes procedures
T6498 632-634 POS denotes 's
T6499 645-647 , denotes ,
T6500 647-648 LS denotes h
T6501 653-678 NN denotes TTTACGGAGCCCTGGCGCTCGATGT
T6502 648-650 : denotes :
T6503 650-651 CD denotes 5
T6504 651-652 SYM denotes ′
T6505 652-653 HYPH denotes -
T6506 678-679 HYPH denotes -
T6507 679-680 CD denotes 3
T6508 680-681 SYM denotes ′
T6509 682-685 CC denotes and
T6510 686-687 LS denotes i
T6511 692-717 NN denotes GTGGGAGGGACAAAAGTTCGAGGCC
T6512 687-689 : denotes :
T6513 689-690 CD denotes 5
T6514 690-691 SYM denotes ′
T6515 691-692 HYPH denotes -
T6516 717-718 HYPH denotes -
T6517 718-719 CD denotes 3
T6518 719-720 SYM denotes ′
T6519 729-732 DT denotes the
T6520 737-743 NN denotes marker
T6521 733-736 NN denotes Neo
T6522 744-746 IN denotes in
T6523 747-750 DT denotes the
T6524 758-764 NN denotes allele
T6525 751-754 NN denotes p53
T6526 755-757 NN denotes KO
T6527 765-774 IN denotes according
T6528 775-777 IN denotes to
T6529 778-785 NNP denotes Taconic
T6530 788-798 NNS denotes procedures
T6531 785-787 POS denotes 's
T6532 798-799 . denotes .
R1873 T6359 T6360 meta a,CCCCGGCCCTCACCCTCATCTTCG
R1874 T6360 T6365 nsubj CCCCGGCCCTCACCCTCATCTTCG,amplify
R1875 T6361 T6359 punct : ,a
R1876 T6362 T6360 nummod 5,CCCCGGCCCTCACCCTCATCTTCG
R1877 T6363 T6362 punct ′,5
R1878 T6364 T6360 punct -,CCCCGGCCCTCACCCTCATCTTCG
R1879 T6365 T6489 ccomp amplify,amplify
R1880 T6366 T6360 punct -,CCCCGGCCCTCACCCTCATCTTCG
R1881 T6367 T6360 nummod 3,CCCCGGCCCTCACCCTCATCTTCG
R1882 T6368 T6360 punct ′,CCCCGGCCCTCACCCTCATCTTCG
R1883 T6369 T6360 punct ", ",CCCCGGCCCTCACCCTCATCTTCG
R1884 T6370 T6360 prep from,CCCCGGCCCTCACCCTCATCTTCG
R1885 T6371 T6372 det the,gene
R1886 T6372 T6370 pobj gene,from
R1887 T6373 T6372 compound PuΔTK,gene
R1888 T6374 T6360 punct ", ",CCCCGGCCCTCACCCTCATCTTCG
R1889 T6375 T6360 appos assays,CCCCGGCCCTCACCCTCATCTTCG
R1890 T6376 T6375 acl targeting,assays
R1891 T6377 T6376 prep of,targeting
R1892 T6378 T6379 compound Flox,plasmid
R1893 T6379 T6377 pobj plasmid,of
R1894 T6380 T6360 punct ;,CCCCGGCCCTCACCCTCATCTTCG
R1895 T6381 T6382 meta b,AACAAAACAAAACAGCAGCAACAA
R1896 T6382 T6360 conj AACAAAACAAAACAGCAGCAACAA,CCCCGGCCCTCACCCTCATCTTCG
R1897 T6383 T6381 punct : ,b
R1898 T6384 T6382 nummod 5,AACAAAACAAAACAGCAGCAACAA
R1899 T6385 T6384 punct ′,5
R1900 T6386 T6382 punct -,AACAAAACAAAACAGCAGCAACAA
R1901 T6387 T6382 punct -,AACAAAACAAAACAGCAGCAACAA
R1902 T6388 T6382 nummod 3,AACAAAACAAAACAGCAGCAACAA
R1903 T6389 T6382 punct ′,AACAAAACAAAACAGCAGCAACAA
R1904 T6390 T6382 punct ", ",AACAAAACAAAACAGCAGCAACAA
R1905 T6391 T6382 prep from,AACAAAACAAAACAGCAGCAACAA
R1906 T6392 T6391 pobj sequences,from
R1907 T6393 T6394 advmod downstream,outside
R1908 T6394 T6392 prep outside,sequences
R1909 T6395 T6393 prep of,downstream
R1910 T6396 T6397 det the,gene
R1911 T6397 T6395 pobj gene,of
R1912 T6398 T6397 compound p53,gene
R1913 T6399 T6394 cc and,outside
R1914 T6400 T6401 compound Flox,sequences
R1915 T6401 T6394 pobj sequences,outside
R1916 T6402 T6382 punct ", ",AACAAAACAAAACAGCAGCAACAA
R1917 T6403 T6382 appos assays,AACAAAACAAAACAGCAGCAACAA
R1918 T6404 T6403 acl targeting,assays
R1919 T6405 T6404 prep of,targeting
R1920 T6406 T6405 pobj Flox,of
R1921 T6407 T6406 cc and,Flox
R1922 T6408 T6406 conj RMCE,Flox
R1923 T6409 T6403 prep with,assays
R1924 T6410 T6411 nmod p53GFP,plasmids
R1925 T6411 T6409 pobj plasmids,with
R1926 T6412 T6410 cc or,p53GFP
R1927 T6413 T6410 conj p53ΔPGFP,p53GFP
R1928 T6414 T6382 punct ;,AACAAAACAAAACAGCAGCAACAA
R1929 T6415 T6416 meta c,TGAAGAGCAAGGGCGTGGTGAAGGA
R1930 T6416 T6382 conj TGAAGAGCAAGGGCGTGGTGAAGGA,AACAAAACAAAACAGCAGCAACAA
R1931 T6417 T6415 punct : ,c
R1932 T6418 T6416 nummod 5,TGAAGAGCAAGGGCGTGGTGAAGGA
R1933 T6419 T6418 punct ′,5
R1934 T6420 T6416 punct -,TGAAGAGCAAGGGCGTGGTGAAGGA
R1935 T6421 T6416 punct -,TGAAGAGCAAGGGCGTGGTGAAGGA
R1936 T6422 T6416 nummod 3,TGAAGAGCAAGGGCGTGGTGAAGGA
R1937 T6423 T6416 punct ′,TGAAGAGCAAGGGCGTGGTGAAGGA
R1938 T6424 T6416 punct ", ",TGAAGAGCAAGGGCGTGGTGAAGGA
R1939 T6425 T6416 prep from,TGAAGAGCAAGGGCGTGGTGAAGGA
R1940 T6426 T6427 compound GFP,sequences
R1941 T6427 T6425 pobj sequences,from
R1942 T6428 T6416 punct ", ",TGAAGAGCAAGGGCGTGGTGAAGGA
R1943 T6429 T6430 compound assays,RMCE
R1944 T6430 T6416 appos RMCE,TGAAGAGCAAGGGCGTGGTGAAGGA
R1945 T6431 T6430 prep with,RMCE
R1946 T6432 T6433 compound p53GFP,orp53ΔPGFP
R1947 T6433 T6434 compound orp53ΔPGFP,plasmids
R1948 T6434 T6431 pobj plasmids,with
R1949 T6435 T6416 punct ;,TGAAGAGCAAGGGCGTGGTGAAGGA
R1950 T6436 T6437 meta d,CAAAAAATGGAAGGAAATCAGGAACTAA
R1951 T6437 T6416 conj CAAAAAATGGAAGGAAATCAGGAACTAA,TGAAGAGCAAGGGCGTGGTGAAGGA
R1952 T6438 T6436 punct : ,d
R1953 T6439 T6437 nummod 5,CAAAAAATGGAAGGAAATCAGGAACTAA
R1954 T6440 T6439 punct ′,5
R1955 T6441 T6437 punct -,CAAAAAATGGAAGGAAATCAGGAACTAA
R1956 T6442 T6437 punct -,CAAAAAATGGAAGGAAATCAGGAACTAA
R1957 T6443 T6437 nummod 3,CAAAAAATGGAAGGAAATCAGGAACTAA
R1958 T6444 T6437 punct ′,CAAAAAATGGAAGGAAATCAGGAACTAA
R1959 T6445 T6437 punct ", ",CAAAAAATGGAAGGAAATCAGGAACTAA
R1960 T6446 T6437 prep from,CAAAAAATGGAAGGAAATCAGGAACTAA
R1961 T6447 T6448 compound p53,intron
R1962 T6448 T6446 pobj intron,from
R1963 T6449 T6448 nummod 3,intron
R1964 T6450 T6437 punct ", ",CAAAAAATGGAAGGAAATCAGGAACTAA
R1965 T6451 T6437 cc and,CAAAAAATGGAAGGAAATCAGGAACTAA
R1966 T6452 T6453 meta e,TCTAGACAGAGAAAAAAGAGGCATT
R1967 T6453 T6437 conj TCTAGACAGAGAAAAAAGAGGCATT,CAAAAAATGGAAGGAAATCAGGAACTAA
R1968 T6454 T6452 punct : ,e
R1969 T6455 T6453 nummod 5,TCTAGACAGAGAAAAAAGAGGCATT
R1970 T6456 T6455 punct ′,5
R1971 T6457 T6453 punct -,TCTAGACAGAGAAAAAAGAGGCATT
R1972 T6458 T6453 punct -,TCTAGACAGAGAAAAAAGAGGCATT
R1973 T6459 T6453 nummod 3,TCTAGACAGAGAAAAAAGAGGCATT
R1974 T6460 T6453 punct ′,TCTAGACAGAGAAAAAAGAGGCATT
R1975 T6461 T6453 punct ", ",TCTAGACAGAGAAAAAAGAGGCATT
R1976 T6462 T6453 prep from,TCTAGACAGAGAAAAAAGAGGCATT
R1977 T6463 T6464 compound p53,intron
R1978 T6464 T6462 pobj intron,from
R1979 T6465 T6464 nummod 4,intron
R1980 T6466 T6453 punct ", ",TCTAGACAGAGAAAAAAGAGGCATT
R1981 T6467 T6468 compound assay,RMCE
R1982 T6468 T6453 appos RMCE,TCTAGACAGAGAAAAAAGAGGCATT
R1983 T6469 T6468 prep with,RMCE
R1984 T6470 T6471 compound p53ΔPGFP,plasmid
R1985 T6471 T6469 pobj plasmid,with
R1986 T6472 T6453 punct ;,TCTAGACAGAGAAAAAAGAGGCATT
R1987 T6473 T6474 meta f,ATGGGAGGCTGCCAGTCCTAACCC
R1988 T6474 T6453 conj ATGGGAGGCTGCCAGTCCTAACCC,TCTAGACAGAGAAAAAAGAGGCATT
R1989 T6475 T6473 punct : ,f
R1990 T6476 T6474 nummod 5,ATGGGAGGCTGCCAGTCCTAACCC
R1991 T6477 T6474 punct ′,ATGGGAGGCTGCCAGTCCTAACCC
R1992 T6478 T6474 punct -,ATGGGAGGCTGCCAGTCCTAACCC
R1993 T6479 T6474 cc and,ATGGGAGGCTGCCAGTCCTAACCC
R1994 T6480 T6481 meta g,GTGTTTCATTAGTTCCCCACCTTGAC
R1995 T6481 T6474 conj GTGTTTCATTAGTTCCCCACCTTGAC,ATGGGAGGCTGCCAGTCCTAACCC
R1996 T6482 T6480 punct : ,g
R1997 T6483 T6481 nummod 5,GTGTTTCATTAGTTCCCCACCTTGAC
R1998 T6484 T6483 punct ′,5
R1999 T6485 T6481 punct -,GTGTTTCATTAGTTCCCCACCTTGAC
R2000 T6486 T6481 punct -,GTGTTTCATTAGTTCCCCACCTTGAC
R2001 T6487 T6481 nummod 3,GTGTTTCATTAGTTCCCCACCTTGAC
R2002 T6488 T6481 punct ′,GTGTTTCATTAGTTCCCCACCTTGAC
R2003 T6490 T6491 det the,allele
R2004 T6491 T6365 dobj allele,amplify
R2005 T6492 T6493 compound WT,p53
R2006 T6493 T6491 compound p53,allele
R2007 T6494 T6365 prep according,amplify
R2008 T6495 T6494 prep to,according
R2009 T6496 T6497 poss Taconic,procedures
R2010 T6497 T6495 pobj procedures,to
R2011 T6498 T6496 case 's,Taconic
R2012 T6499 T6489 punct ", ",amplify
R2013 T6500 T6501 meta h,TTTACGGAGCCCTGGCGCTCGATGT
R2014 T6501 T6489 nsubj TTTACGGAGCCCTGGCGCTCGATGT,amplify
R2015 T6502 T6500 punct : ,h
R2016 T6503 T6501 nummod 5,TTTACGGAGCCCTGGCGCTCGATGT
R2017 T6504 T6501 punct ′,TTTACGGAGCCCTGGCGCTCGATGT
R2018 T6505 T6501 punct -,TTTACGGAGCCCTGGCGCTCGATGT
R2019 T6506 T6501 punct -,TTTACGGAGCCCTGGCGCTCGATGT
R2020 T6507 T6501 nummod 3,TTTACGGAGCCCTGGCGCTCGATGT
R2021 T6508 T6501 punct ′,TTTACGGAGCCCTGGCGCTCGATGT
R2022 T6509 T6501 cc and,TTTACGGAGCCCTGGCGCTCGATGT
R2023 T6510 T6511 meta i,GTGGGAGGGACAAAAGTTCGAGGCC
R2024 T6511 T6501 conj GTGGGAGGGACAAAAGTTCGAGGCC,TTTACGGAGCCCTGGCGCTCGATGT
R2025 T6512 T6510 punct : ,i
R2026 T6513 T6511 nummod 5,GTGGGAGGGACAAAAGTTCGAGGCC
R2027 T6514 T6511 punct ′,GTGGGAGGGACAAAAGTTCGAGGCC
R2028 T6515 T6511 punct -,GTGGGAGGGACAAAAGTTCGAGGCC
R2029 T6516 T6511 punct -,GTGGGAGGGACAAAAGTTCGAGGCC
R2030 T6517 T6511 nummod 3,GTGGGAGGGACAAAAGTTCGAGGCC
R2031 T6518 T6511 punct ′,GTGGGAGGGACAAAAGTTCGAGGCC
R2032 T6519 T6520 det the,marker
R2033 T6520 T6489 dobj marker,amplify
R2034 T6521 T6520 compound Neo,marker
R2035 T6522 T6520 prep in,marker
R2036 T6523 T6524 det the,allele
R2037 T6524 T6522 pobj allele,in
R2038 T6525 T6526 compound p53,KO
R2039 T6526 T6524 compound KO,allele
R2040 T6527 T6489 prep according,amplify
R2041 T6528 T6527 prep to,according
R2042 T6529 T6530 poss Taconic,procedures
R2043 T6530 T6528 pobj procedures,to
R2044 T6531 T6529 case 's,Taconic
R2045 T6532 T6489 punct .,amplify

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6326 50-54 SO_EXT:0000704 denotes gene
T6327 81-88 SO_EXT:0000155 denotes plasmid
T6328 130-139 SO_EXT:biological_sequence denotes sequences
T6329 140-150 SO_EXT:sequence_downstreamness denotes downstream
T6330 158-161 PR_EXT:000003035 denotes p53
T6331 162-166 SO_EXT:0000704 denotes gene
T6332 184-193 SO_EXT:biological_sequence denotes sequences
T6333 234-237 PR_EXT:000003035 denotes p53
T6334 244-247 PR_EXT:000003035 denotes p53
T6335 253-261 SO_EXT:0000155 denotes plasmids
T6336 308-317 SO_EXT:biological_sequence denotes sequences
T6337 336-339 PR_EXT:000003035 denotes p53
T6338 354-362 SO_EXT:0000155 denotes plasmids
T6339 408-411 PR_EXT:000003035 denotes p53
T6340 412-418 SO_EXT:0000188 denotes intron
T6341 467-470 PR_EXT:000003035 denotes p53
T6342 471-477 SO_EXT:0000188 denotes intron
T6343 497-500 PR_EXT:000003035 denotes p53
T6344 506-513 SO_EXT:0000155 denotes plasmid
T6345 598-600 SO_EXT:wild_type_entity_or_quality denotes WT
T6346 601-604 PR_EXT:000003035 denotes p53
T6347 605-611 SO_EXT:0001023 denotes allele
T6348 733-736 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes Neo
T6349 737-743 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T6350 751-754 PR_EXT:000003035 denotes p53
T6351 758-764 SO_EXT:0001023 denotes allele

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6305 50-54 SO:0000704 denotes gene
T6306 81-88 SO:0000155 denotes plasmid
T6307 158-161 PR:000003035 denotes p53
T6308 162-166 SO:0000704 denotes gene
T6309 234-237 PR:000003035 denotes p53
T6310 244-247 PR:000003035 denotes p53
T6311 253-261 SO:0000155 denotes plasmids
T6312 336-339 PR:000003035 denotes p53
T6313 354-362 SO:0000155 denotes plasmids
T6314 408-411 PR:000003035 denotes p53
T6315 412-418 SO:0000188 denotes intron
T6316 467-470 PR:000003035 denotes p53
T6317 471-477 SO:0000188 denotes intron
T6318 497-500 PR:000003035 denotes p53
T6319 506-513 SO:0000155 denotes plasmid
T6320 601-604 PR:000003035 denotes p53
T6321 605-611 SO:0001023 denotes allele
T6322 751-754 PR:000003035 denotes p53
T6323 758-764 SO:0001023 denotes allele