PMC:149366 / 35944-36551
Annnotations
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7790 | 562-572 | GO:0042995 | denotes | projection |
| T7789 | 322-329 | CHEBI:5291 | denotes | gelatin |
| T7788 | 290-304 | UBERON:0004727 | denotes | cochlear nerve |
| T7787 | 265-271 | UBERON:0000955 | denotes | brains |
| T7786 | 157-162 | PR:000013043 | denotes | Brn3c |
| T7785 | 94-97 | CHEBI:52024 | denotes | DiA |
| T7784 | 51-54 | CHEBI:52029 | denotes | DiI |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7826 | 562-572 | GO:0042995 | denotes | projection |
| T7825 | 346-349 | CHEBI_EXT:paraformaldehye | denotes | PFA |
| T7824 | 322-329 | CHEBI:5291 | denotes | gelatin |
| T7823 | 290-304 | UBERON:0004727 | denotes | cochlear nerve |
| T7822 | 265-271 | UBERON:0000955 | denotes | brains |
| T7821 | 200-208 | SO_EXT:wild_type_entity_or_quality | denotes | wildtype |
| T7820 | 168-175 | SO_EXT:sequence_altered_entity | denotes | mutants |
| T7819 | 163-167 | SO_EXT:sequence_nullness | denotes | null |
| T7818 | 157-162 | PR_EXT:000013043 | denotes | Brn3c |
| T7817 | 94-97 | CHEBI:52024 | denotes | DiA |
| T7816 | 51-54 | CHEBI:52029 | denotes | DiI |
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8151 | 606-607 | . | denotes | . |
| T8150 | 595-600 | JJ | denotes | focal |
| T8149 | 601-606 | NN | denotes | plane |
| T8148 | 591-594 | CD | denotes | one |
| T8147 | 588-590 | IN | denotes | in |
| T8146 | 580-587 | NN | denotes | section |
| T8145 | 576-579 | CD | denotes | one |
| T8144 | 573-575 | IN | denotes | in |
| T8143 | 555-561 | JJ | denotes | entire |
| T8142 | 562-572 | NN | denotes | projection |
| T8141 | 551-554 | DT | denotes | the |
| T8140 | 546-550 | VB | denotes | view |
| T8139 | 543-545 | TO | denotes | to |
| T8138 | 528-532 | VBD | denotes | were |
| T8137 | 533-542 | VBN | denotes | collapsed |
| T8136 | 521-527 | NNS | denotes | stacks |
| T8135 | 515-520 | NN | denotes | Image |
| T8134 | 514-607 | sentence | denotes | Image stacks were collapsed to view the entire projection in one section in one focal plane. |
| T8133 | 513-514 | . | denotes | . |
| T8132 | 499-502 | CD | denotes | 800 |
| T8131 | 491-498 | NNP | denotes | Eclipse |
| T8130 | 485-490 | NNP | denotes | Nikon |
| T8129 | 503-513 | NN | denotes | microscope |
| T8128 | 483-484 | DT | denotes | a |
| T8127 | 480-482 | IN | denotes | to |
| T8126 | 471-479 | VBN | denotes | attached |
| T8125 | 455-463 | JJ | denotes | confocal |
| T8124 | 450-454 | CD | denotes | 2000 |
| T8123 | 441-449 | NNP | denotes | Radiance |
| T8122 | 434-440 | NNP | denotes | Biorad |
| T8121 | 464-470 | NN | denotes | system |
| T8120 | 432-433 | DT | denotes | a |
| T8119 | 427-431 | IN | denotes | with |
| T8118 | 420-426 | VBN | denotes | viewed |
| T8117 | 416-419 | CC | denotes | and |
| T8116 | 414-415 | -RRB- | denotes | ) |
| T8115 | 402-404 | NN | denotes | μm |
| T8114 | 398-401 | CD | denotes | 100 |
| T8113 | 405-414 | NN | denotes | thickness |
| T8112 | 397-398 | -LRB- | denotes | ( |
| T8111 | 387-396 | NN | denotes | vibratome |
| T8110 | 385-386 | DT | denotes | a |
| T8109 | 382-384 | IN | denotes | on |
| T8108 | 372-381 | RB | denotes | coronally |
| T8107 | 362-371 | VBN | denotes | sectioned |
| T8106 | 360-362 | , | denotes | , |
| T8105 | 355-360 | NN | denotes | night |
| T8104 | 350-354 | IN | denotes | over |
| T8103 | 346-349 | NN | denotes | PFA |
| T8102 | 344-345 | NN | denotes | % |
| T8101 | 343-344 | CD | denotes | 4 |
| T8100 | 340-342 | IN | denotes | in |
| T8099 | 331-339 | VBN | denotes | hardened |
| T8098 | 329-331 | , | denotes | , |
| T8097 | 322-329 | NN | denotes | gelatin |
| T8096 | 319-321 | IN | denotes | in |
| T8095 | 305-309 | VBD | denotes | were |
| T8094 | 290-298 | JJ | denotes | cochlear |
| T8093 | 281-289 | VBN | denotes | attached |
| T8092 | 299-304 | NN | denotes | nerve |
| T8091 | 277-280 | DT | denotes | the |
| T8090 | 272-276 | IN | denotes | with |
| T8089 | 265-271 | NNS | denotes | brains |
| T8088 | 261-264 | DT | denotes | the |
| T8087 | 259-261 | , | denotes | , |
| T8086 | 258-259 | -RRB- | denotes | ] |
| T8085 | 256-258 | CD | denotes | 43 |
| T8084 | 255-256 | -LRB- | denotes | [ |
| T8083 | 240-249 | NN | denotes | diffusion |
| T8082 | 250-254 | NN | denotes | time |
| T8081 | 228-239 | JJ | denotes | appropriate |
| T8080 | 310-318 | VBN | denotes | embedded |
| T8079 | 222-227 | IN | denotes | After |
| T8078 | 221-514 | sentence | denotes | After appropriate diffusion time [43], the brains with the attached cochlear nerve were embedded in gelatin, hardened in 4% PFA over night, sectioned coronally on a vibratome (100 μm thickness) and viewed with a Biorad Radiance 2000 confocal system attached to a Nikon Eclipse 800 microscope. |
| T8077 | 220-221 | . | denotes | . |
| T8076 | 209-220 | NNS | denotes | littermates |
| T8075 | 200-208 | JJ | denotes | wildtype |
| T8074 | 197-199 | IN | denotes | of |
| T8073 | 182-189 | JJ | denotes | similar |
| T8072 | 190-196 | NN | denotes | number |
| T8071 | 180-181 | DT | denotes | a |
| T8070 | 176-179 | CC | denotes | and |
| T8069 | 163-167 | JJ | denotes | null |
| T8068 | 157-162 | NN | denotes | Brn3c |
| T8067 | 168-175 | NNS | denotes | mutants |
| T8066 | 154-156 | NN | denotes | P8 |
| T8065 | 152-153 | CD | denotes | 4 |
| T8064 | 148-151 | CC | denotes | and |
| T8063 | 145-147 | NN | denotes | P0 |
| T8062 | 143-144 | CD | denotes | 2 |
| T8061 | 140-142 | IN | denotes | of |
| T8060 | 128-134 | JJ | denotes | apical |
| T8059 | 135-139 | NN | denotes | turn |
| T8058 | 124-127 | DT | denotes | the |
| T8057 | 119-123 | IN | denotes | into |
| T8056 | 105-111 | NN | denotes | filter |
| T8055 | 112-118 | NNS | denotes | strips |
| T8054 | 98-104 | VBN | denotes | soaked |
| T8053 | 94-97 | NN | denotes | DiA |
| T8052 | 90-93 | CC | denotes | and |
| T8051 | 85-89 | NN | denotes | base |
| T8050 | 81-84 | DT | denotes | the |
| T8049 | 76-80 | IN | denotes | into |
| T8048 | 62-68 | NN | denotes | filter |
| T8047 | 69-75 | NNS | denotes | strips |
| T8046 | 55-61 | VBN | denotes | soaked |
| T8045 | 51-54 | NN | denotes | DiI |
| T8044 | 41-50 | VBG | denotes | inserting |
| T8043 | 38-40 | IN | denotes | by |
| T8042 | 24-27 | VBD | denotes | was |
| T8041 | 28-37 | VBN | denotes | evaluated |
| T8040 | 13-23 | NN | denotes | projection |
| T8039 | 0-12 | JJ | denotes | Cochleotopic |
| R5254 | T8039 | T8040 | amod | Cochleotopic,projection |
| R5255 | T8040 | T8041 | nsubjpass | projection,evaluated |
| R5256 | T8042 | T8041 | auxpass | was,evaluated |
| R5257 | T8043 | T8041 | prep | by,evaluated |
| R5258 | T8044 | T8043 | pcomp | inserting,by |
| R5259 | T8045 | T8046 | npadvmod | DiI,soaked |
| R5260 | T8046 | T8047 | amod | soaked,strips |
| R5261 | T8047 | T8044 | dobj | strips,inserting |
| R5262 | T8048 | T8047 | compound | filter,strips |
| R5263 | T8049 | T8044 | prep | into,inserting |
| R5264 | T8050 | T8051 | det | the,base |
| R5265 | T8051 | T8049 | pobj | base,into |
| R5266 | T8052 | T8044 | cc | and,inserting |
| R5267 | T8053 | T8054 | npadvmod | DiA,soaked |
| R5268 | T8054 | T8055 | amod | soaked,strips |
| R5269 | T8055 | T8044 | conj | strips,inserting |
| R5270 | T8056 | T8055 | compound | filter,strips |
| R5271 | T8057 | T8055 | prep | into,strips |
| R5272 | T8058 | T8059 | det | the,turn |
| R5273 | T8059 | T8057 | pobj | turn,into |
| R5274 | T8060 | T8059 | amod | apical,turn |
| R5275 | T8061 | T8059 | prep | of,turn |
| R5276 | T8062 | T8063 | nummod | 2,P0 |
| R5277 | T8063 | T8061 | pobj | P0,of |
| R5278 | T8064 | T8063 | cc | and,P0 |
| R5279 | T8065 | T8066 | nummod | 4,P8 |
| R5280 | T8066 | T8067 | nmod | P8,mutants |
| R5281 | T8067 | T8063 | conj | mutants,P0 |
| R5282 | T8068 | T8067 | nmod | Brn3c,mutants |
| R5283 | T8069 | T8067 | amod | null,mutants |
| R5284 | T8070 | T8063 | cc | and,P0 |
| R5285 | T8071 | T8072 | det | a,number |
| R5286 | T8072 | T8063 | conj | number,P0 |
| R5287 | T8073 | T8072 | amod | similar,number |
| R5288 | T8074 | T8072 | prep | of,number |
| R5289 | T8075 | T8076 | amod | wildtype,littermates |
| R5290 | T8076 | T8074 | pobj | littermates,of |
| R5291 | T8077 | T8041 | punct | .,evaluated |
| R5292 | T8079 | T8080 | prep | After,embedded |
| R5293 | T8081 | T8082 | amod | appropriate,time |
| R5294 | T8082 | T8079 | pobj | time,After |
| R5295 | T8083 | T8082 | compound | diffusion,time |
| R5296 | T8084 | T8085 | punct | [,43 |
| R5297 | T8085 | T8079 | parataxis | 43,After |
| R5298 | T8086 | T8085 | punct | ],43 |
| R5299 | T8087 | T8080 | punct | ", ",embedded |
| R5300 | T8088 | T8089 | det | the,brains |
| R5301 | T8089 | T8080 | nsubjpass | brains,embedded |
| R5302 | T8090 | T8089 | prep | with,brains |
| R5303 | T8091 | T8092 | det | the,nerve |
| R5304 | T8092 | T8090 | pobj | nerve,with |
| R5305 | T8093 | T8092 | amod | attached,nerve |
| R5306 | T8094 | T8092 | amod | cochlear,nerve |
| R5307 | T8095 | T8080 | auxpass | were,embedded |
| R5308 | T8096 | T8080 | prep | in,embedded |
| R5309 | T8097 | T8096 | pobj | gelatin,in |
| R5310 | T8098 | T8080 | punct | ", ",embedded |
| R5311 | T8099 | T8080 | conj | hardened,embedded |
| R5312 | T8100 | T8099 | prep | in,hardened |
| R5313 | T8101 | T8102 | nummod | 4,% |
| R5314 | T8102 | T8103 | compound | %,PFA |
| R5315 | T8103 | T8100 | pobj | PFA,in |
| R5316 | T8104 | T8099 | prep | over,hardened |
| R5317 | T8105 | T8104 | pobj | night,over |
| R5318 | T8106 | T8099 | punct | ", ",hardened |
| R5319 | T8107 | T8099 | conj | sectioned,hardened |
| R5320 | T8108 | T8107 | advmod | coronally,sectioned |
| R5321 | T8109 | T8107 | prep | on,sectioned |
| R5322 | T8110 | T8111 | det | a,vibratome |
| R5323 | T8111 | T8109 | pobj | vibratome,on |
| R5324 | T8112 | T8113 | punct | (,thickness |
| R5325 | T8113 | T8107 | parataxis | thickness,sectioned |
| R5326 | T8114 | T8115 | nummod | 100,μm |
| R5327 | T8115 | T8113 | compound | μm,thickness |
| R5328 | T8116 | T8113 | punct | ),thickness |
| R5329 | T8117 | T8107 | cc | and,sectioned |
| R5330 | T8118 | T8107 | conj | viewed,sectioned |
| R5331 | T8119 | T8118 | prep | with,viewed |
| R5332 | T8120 | T8121 | det | a,system |
| R5333 | T8121 | T8119 | pobj | system,with |
| R5334 | T8122 | T8123 | nmod | Biorad,Radiance |
| R5335 | T8123 | T8121 | nmod | Radiance,system |
| R5336 | T8124 | T8123 | nummod | 2000,Radiance |
| R5337 | T8125 | T8121 | amod | confocal,system |
| R5338 | T8126 | T8121 | acl | attached,system |
| R5339 | T8127 | T8126 | prep | to,attached |
| R5340 | T8128 | T8129 | det | a,microscope |
| R5341 | T8129 | T8127 | pobj | microscope,to |
| R5342 | T8130 | T8131 | nmod | Nikon,Eclipse |
| R5343 | T8131 | T8129 | nmod | Eclipse,microscope |
| R5344 | T8132 | T8131 | nummod | 800,Eclipse |
| R5345 | T8133 | T8080 | punct | .,embedded |
| R5346 | T8135 | T8136 | compound | Image,stacks |
| R5347 | T8136 | T8137 | nsubjpass | stacks,collapsed |
| R5348 | T8138 | T8137 | auxpass | were,collapsed |
| R5349 | T8139 | T8140 | aux | to,view |
| R5350 | T8140 | T8137 | advcl | view,collapsed |
| R5351 | T8141 | T8142 | det | the,projection |
| R5352 | T8142 | T8140 | dobj | projection,view |
| R5353 | T8143 | T8142 | amod | entire,projection |
| R5354 | T8144 | T8140 | prep | in,view |
| R5355 | T8145 | T8146 | nummod | one,section |
| R5356 | T8146 | T8144 | pobj | section,in |
| R5357 | T8147 | T8140 | prep | in,view |
| R5358 | T8148 | T8149 | nummod | one,plane |
| R5359 | T8149 | T8147 | pobj | plane,in |
| R5360 | T8150 | T8149 | amod | focal,plane |
| R5361 | T8151 | T8137 | punct | .,collapsed |