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PMC:149350 / 8509-9301 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2248 187-201 CHEBI:64276 denotes glutaraldehyde
T2249 217-234 CHEBI:62956 denotes sodium cacodylate
T2250 295-299 CHEBI:9754 denotes Tris
T2251 323-327 CHEBI:9754 denotes Tris
T2252 336-340 CHEBI:26710 denotes NaCl
T2253 364-369 CHEBI:18059 denotes lipid
T2254 370-379 GO:0016020 denotes membranes
T2255 408-474 CHEBI:52029 denotes 1,1'-dioctadecyl-3,3,3',3'-tetramethylindocarbocyanine perchlorate
T2256 477-480 CHEBI:52029 denotes DiI
T2257 482-488 CHEBI:52029 denotes DiIC18
T2258 583-587 CHEBI:9754 denotes Tris
T2259 609-616 GO:0005634 denotes nucleic

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2292 0-6 NNS denotes Lenses
T2293 22-31 VBN denotes sectioned
T2294 7-11 VBD denotes were
T2295 12-21 NN denotes vibratome
T2296 32-36 IN denotes into
T2297 37-40 CD denotes 100
T2298 41-44 CD denotes 200
T2299 40-41 SYM denotes –
T2300 45-47 NN denotes μm
T2301 48-53 JJ denotes thick
T2302 54-62 NNS denotes sections
T2303 63-68 IN denotes along
T2304 69-72 DT denotes the
T2305 119-123 NNS denotes axes
T2306 73-80 JJ denotes optical
T2307 81-82 -LRB- denotes (
T2308 82-90 JJ denotes anterior
T2309 91-93 IN denotes to
T2310 94-103 JJ denotes posterior
T2311 103-104 -RRB- denotes )
T2312 105-107 CC denotes or
T2313 108-118 JJ denotes equatorial
T2314 123-124 . denotes .
T2315 124-350 sentence denotes Thick sections were fixed in 2% (w/v) paraformaldehyde and 2% glutaraldehyde (v/v) in 0.1 M sodium cacodylate buffer pH 7.2 at RT for 24 hrs then washed several times in Tris buffered saline (0.5 M Tris, 150 mM NaCl, pH 7.4).
T2316 125-130 JJ denotes Thick
T2317 131-139 NNS denotes sections
T2318 145-150 VBN denotes fixed
T2319 140-144 VBD denotes were
T2320 151-153 IN denotes in
T2321 154-155 CD denotes 2
T2322 155-156 NN denotes %
T2323 163-179 NN denotes paraformaldehyde
T2324 157-158 -LRB- denotes (
T2325 158-159 NN denotes w
T2326 159-160 SYM denotes /
T2327 160-161 NN denotes v
T2328 161-162 -RRB- denotes )
T2329 180-183 CC denotes and
T2330 184-185 CD denotes 2
T2331 185-186 NN denotes %
T2332 187-201 NN denotes glutaraldehyde
T2333 202-203 -LRB- denotes (
T2334 203-204 NN denotes v
T2335 204-205 SYM denotes /
T2336 205-206 NN denotes v
T2337 206-207 -RRB- denotes )
T2338 208-210 IN denotes in
T2339 211-214 CD denotes 0.1
T2340 215-216 NN denotes M
T2341 235-241 NN denotes buffer
T2342 217-223 NN denotes sodium
T2343 224-234 NN denotes cacodylate
T2344 242-244 NN denotes pH
T2345 245-248 CD denotes 7.2
T2346 249-251 IN denotes at
T2347 252-254 NN denotes RT
T2348 255-258 IN denotes for
T2349 259-261 CD denotes 24
T2350 262-265 NNS denotes hrs
T2351 266-270 RB denotes then
T2352 271-277 VBD denotes washed
T2353 278-285 JJ denotes several
T2354 286-291 NNS denotes times
T2355 292-294 IN denotes in
T2356 295-299 NNP denotes Tris
T2357 300-308 VBN denotes buffered
T2358 309-315 NN denotes saline
T2359 316-317 -LRB- denotes (
T2360 342-344 NN denotes pH
T2361 317-320 CD denotes 0.5
T2362 321-322 NN denotes M
T2363 323-327 NNP denotes Tris
T2364 327-329 , denotes ,
T2365 329-332 CD denotes 150
T2366 333-335 NN denotes mM
T2367 336-340 NN denotes NaCl
T2368 340-342 , denotes ,
T2369 345-348 CD denotes 7.4
T2370 348-349 -RRB- denotes )
T2371 349-350 . denotes .
T2372 350-537 sentence denotes To visualize lipid membranes, sections were stained with 1,1'-dioctadecyl-3,3,3',3'-tetramethylindocarbocyanine perchlorate ('DiI';DiIC18; Molecular Probes) as previously described [24].
T2373 351-353 TO denotes To
T2374 354-363 VB denotes visualize
T2375 395-402 VBN denotes stained
T2376 364-369 NN denotes lipid
T2377 370-379 NNS denotes membranes
T2378 379-381 , denotes ,
T2379 381-389 NNS denotes sections
T2380 390-394 VBD denotes were
T2381 403-407 IN denotes with
T2382 408-409 CD denotes 1
T2383 413-424 NN denotes dioctadecyl
T2384 409-410 , denotes ,
T2385 410-411 CD denotes 1
T2386 411-412 SYM denotes '
T2387 412-413 HYPH denotes -
T2388 424-425 HYPH denotes -
T2389 425-426 CD denotes 3
T2390 426-427 , denotes ,
T2391 427-428 CD denotes 3
T2392 463-474 NN denotes perchlorate
T2393 428-429 , denotes ,
T2394 429-430 CD denotes 3
T2395 430-431 SYM denotes '
T2396 431-432 , denotes ,
T2397 432-433 CD denotes 3
T2398 433-434 SYM denotes '
T2399 434-435 HYPH denotes -
T2400 435-462 JJ denotes tetramethylindocarbocyanine
T2401 475-476 -LRB- denotes (
T2402 500-506 NNP denotes Probes
T2403 476-477 `` denotes '
T2404 477-480 NN denotes DiI
T2405 480-481 '' denotes '
T2406 481-482 : denotes ;
T2407 482-488 NN denotes DiIC18
T2408 488-489 : denotes ;
T2409 490-499 NNP denotes Molecular
T2410 506-507 -RRB- denotes )
T2411 508-510 IN denotes as
T2412 522-531 VBN denotes described
T2413 511-521 RB denotes previously
T2414 532-533 -LRB- denotes [
T2415 533-535 CD denotes 24
T2416 535-536 -RRB- denotes ]
T2417 536-537 . denotes .
T2418 537-792 sentence denotes Sections were then washed several times with Tris buffered saline, and nucleic acids were stained by incubating sections in TBS containing 1 μM SYTOX Green (Molecular Probes) for 10 min at RT followed by several washes with TBS prior to confocal imaging.
T2419 538-546 NNS denotes Sections
T2420 557-563 VBN denotes washed
T2421 547-551 VBD denotes were
T2422 552-556 RB denotes then
T2423 564-571 JJ denotes several
T2424 572-577 NNS denotes times
T2425 578-582 IN denotes with
T2426 583-587 NNP denotes Tris
T2427 588-596 VBN denotes buffered
T2428 597-603 NN denotes saline
T2429 603-605 , denotes ,
T2430 605-608 CC denotes and
T2431 609-616 JJ denotes nucleic
T2432 617-622 NNS denotes acids
T2433 628-635 VBN denotes stained
T2434 623-627 VBD denotes were
T2435 636-638 IN denotes by
T2436 639-649 VBG denotes incubating
T2437 650-658 NNS denotes sections
T2438 659-661 IN denotes in
T2439 662-665 NN denotes TBS
T2440 666-676 VBG denotes containing
T2441 677-678 CD denotes 1
T2442 679-681 NN denotes μM
T2443 688-693 NN denotes Green
T2444 682-687 NN denotes SYTOX
T2445 694-695 -LRB- denotes (
T2446 705-711 NNP denotes Probes
T2447 695-704 JJ denotes Molecular
T2448 711-712 -RRB- denotes )
T2449 713-716 IN denotes for
T2450 717-719 CD denotes 10
T2451 720-723 NN denotes min
T2452 724-726 IN denotes at
T2453 727-729 NN denotes RT
T2454 730-738 VBN denotes followed
T2455 739-741 IN denotes by
T2456 742-749 JJ denotes several
T2457 750-756 NNS denotes washes
T2458 757-761 IN denotes with
T2459 762-765 NN denotes TBS
T2460 766-771 RB denotes prior
T2461 772-774 IN denotes to
T2462 775-783 JJ denotes confocal
T2463 784-791 NN denotes imaging
T2464 791-792 . denotes .
R1539 T2292 T2293 nsubjpass Lenses,sectioned
R1540 T2294 T2293 auxpass were,sectioned
R1541 T2295 T2293 dep vibratome,sectioned
R1542 T2296 T2293 prep into,sectioned
R1543 T2297 T2298 quantmod 100,200
R1544 T2298 T2300 nummod 200,μm
R1545 T2299 T2298 punct –,200
R1546 T2300 T2301 npadvmod μm,thick
R1547 T2301 T2302 amod thick,sections
R1548 T2302 T2296 pobj sections,into
R1549 T2303 T2293 prep along,sectioned
R1550 T2304 T2305 det the,axes
R1551 T2305 T2303 pobj axes,along
R1552 T2306 T2305 amod optical,axes
R1553 T2307 T2308 punct (,anterior
R1554 T2308 T2306 parataxis anterior,optical
R1555 T2309 T2308 prep to,anterior
R1556 T2310 T2309 amod posterior,to
R1557 T2311 T2308 punct ),anterior
R1558 T2312 T2306 cc or,optical
R1559 T2313 T2306 conj equatorial,optical
R1560 T2314 T2293 punct .,sectioned
R1561 T2316 T2317 amod Thick,sections
R1562 T2317 T2318 nsubjpass sections,fixed
R1563 T2319 T2318 auxpass were,fixed
R1564 T2320 T2318 prep in,fixed
R1565 T2321 T2322 nummod 2,%
R1566 T2322 T2323 nmod %,paraformaldehyde
R1567 T2323 T2320 pobj paraformaldehyde,in
R1568 T2324 T2325 punct (,w
R1569 T2325 T2322 parataxis w,%
R1570 T2326 T2327 punct /,v
R1571 T2327 T2325 prep v,w
R1572 T2328 T2325 punct ),w
R1573 T2329 T2323 cc and,paraformaldehyde
R1574 T2330 T2331 nummod 2,%
R1575 T2331 T2332 compound %,glutaraldehyde
R1576 T2332 T2323 conj glutaraldehyde,paraformaldehyde
R1577 T2333 T2334 punct (,v
R1578 T2334 T2332 parataxis v,glutaraldehyde
R1579 T2335 T2336 punct /,v
R1580 T2336 T2334 prep v,v
R1581 T2337 T2334 punct ),v
R1582 T2338 T2323 prep in,paraformaldehyde
R1583 T2339 T2340 nummod 0.1,M
R1584 T2340 T2341 compound M,buffer
R1585 T2341 T2338 pobj buffer,in
R1586 T2342 T2343 compound sodium,cacodylate
R1587 T2343 T2341 compound cacodylate,buffer
R1588 T2344 T2323 npadvmod pH,paraformaldehyde
R1589 T2345 T2344 nummod 7.2,pH
R1590 T2346 T2318 prep at,fixed
R1591 T2347 T2346 pobj RT,at
R1592 T2348 T2318 prep for,fixed
R1593 T2349 T2350 nummod 24,hrs
R1594 T2350 T2348 pobj hrs,for
R1595 T2351 T2352 advmod then,washed
R1596 T2352 T2318 dep washed,fixed
R1597 T2353 T2354 amod several,times
R1598 T2354 T2352 npadvmod times,washed
R1599 T2355 T2352 prep in,washed
R1600 T2356 T2357 npadvmod Tris,buffered
R1601 T2357 T2358 amod buffered,saline
R1602 T2358 T2355 pobj saline,in
R1603 T2359 T2360 punct (,pH
R1604 T2360 T2358 parataxis pH,saline
R1605 T2361 T2362 nummod 0.5,M
R1606 T2362 T2363 compound M,Tris
R1607 T2363 T2360 dep Tris,pH
R1608 T2364 T2360 punct ", ",pH
R1609 T2365 T2366 nummod 150,mM
R1610 T2366 T2367 compound mM,NaCl
R1611 T2367 T2360 dep NaCl,pH
R1612 T2368 T2360 punct ", ",pH
R1613 T2369 T2360 nummod 7.4,pH
R1614 T2370 T2360 punct ),pH
R1615 T2371 T2318 punct .,fixed
R1616 T2373 T2374 aux To,visualize
R1617 T2374 T2375 advcl visualize,stained
R1618 T2376 T2377 compound lipid,membranes
R1619 T2377 T2374 dobj membranes,visualize
R1620 T2378 T2375 punct ", ",stained
R1621 T2379 T2375 nsubjpass sections,stained
R1622 T2380 T2375 auxpass were,stained
R1623 T2381 T2375 prep with,stained
R1624 T2382 T2383 nummod 1,dioctadecyl
R1625 T2383 T2381 pobj dioctadecyl,with
R1626 T2384 T2382 punct ",",1
R1627 T2385 T2382 appos 1,1
R1628 T2386 T2385 punct ',1
R1629 T2387 T2383 punct -,dioctadecyl
R1630 T2388 T2383 punct -,dioctadecyl
R1631 T2389 T2383 nummod 3,dioctadecyl
R1632 T2390 T2383 punct ",",dioctadecyl
R1633 T2391 T2392 nummod 3,perchlorate
R1634 T2392 T2383 appos perchlorate,dioctadecyl
R1635 T2393 T2391 punct ",",3
R1636 T2394 T2391 appos 3,3
R1637 T2395 T2394 punct ',3
R1638 T2396 T2391 punct ",",3
R1639 T2397 T2391 appos 3,3
R1640 T2398 T2397 punct ',3
R1641 T2399 T2391 punct -,3
R1642 T2400 T2391 amod tetramethylindocarbocyanine,3
R1643 T2401 T2402 punct (,Probes
R1644 T2402 T2383 parataxis Probes,dioctadecyl
R1645 T2403 T2402 punct ',Probes
R1646 T2404 T2402 dep DiI,Probes
R1647 T2405 T2402 punct ',Probes
R1648 T2406 T2402 punct ;,Probes
R1649 T2407 T2402 dep DiIC18,Probes
R1650 T2408 T2402 punct ;,Probes
R1651 T2409 T2402 compound Molecular,Probes
R1652 T2410 T2402 punct ),Probes
R1653 T2411 T2412 mark as,described
R1654 T2412 T2375 advcl described,stained
R1655 T2413 T2412 advmod previously,described
R1656 T2414 T2415 punct [,24
R1657 T2415 T2375 parataxis 24,stained
R1658 T2416 T2415 punct ],24
R1659 T2417 T2375 punct .,stained
R1660 T2419 T2420 nsubjpass Sections,washed
R1661 T2421 T2420 auxpass were,washed
R1662 T2422 T2420 advmod then,washed
R1663 T2423 T2424 amod several,times
R1664 T2424 T2420 npadvmod times,washed
R1665 T2425 T2420 prep with,washed
R1666 T2426 T2427 npadvmod Tris,buffered
R1667 T2427 T2428 amod buffered,saline
R1668 T2428 T2425 pobj saline,with
R1669 T2429 T2420 punct ", ",washed
R1670 T2430 T2420 cc and,washed
R1671 T2431 T2432 amod nucleic,acids
R1672 T2432 T2433 nsubjpass acids,stained
R1673 T2433 T2420 conj stained,washed
R1674 T2434 T2433 auxpass were,stained
R1675 T2435 T2433 prep by,stained
R1676 T2436 T2435 pcomp incubating,by
R1677 T2437 T2436 dobj sections,incubating
R1678 T2438 T2436 prep in,incubating
R1679 T2439 T2438 pobj TBS,in
R1680 T2440 T2439 acl containing,TBS
R1681 T2441 T2442 nummod 1,μM
R1682 T2442 T2443 compound μM,Green
R1683 T2443 T2440 dobj Green,containing
R1684 T2444 T2443 compound SYTOX,Green
R1685 T2445 T2446 punct (,Probes
R1686 T2446 T2440 parataxis Probes,containing
R1687 T2447 T2446 amod Molecular,Probes
R1688 T2448 T2446 punct ),Probes
R1689 T2449 T2436 prep for,incubating
R1690 T2450 T2451 nummod 10,min
R1691 T2451 T2449 pobj min,for
R1692 T2452 T2436 prep at,incubating
R1693 T2453 T2452 pobj RT,at
R1694 T2454 T2436 advcl followed,incubating
R1695 T2455 T2454 agent by,followed
R1696 T2456 T2457 amod several,washes
R1697 T2457 T2455 pobj washes,by
R1698 T2458 T2457 prep with,washes
R1699 T2459 T2458 pobj TBS,with
R1700 T2460 T2457 advmod prior,washes
R1701 T2461 T2460 prep to,prior
R1702 T2462 T2463 amod confocal,imaging
R1703 T2463 T2461 pobj imaging,to
R1704 T2464 T2433 punct .,stained

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2261 0-6 UBERON_EXT:lens denotes Lenses
T2262 163-179 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T2263 187-201 CHEBI:64276 denotes glutaraldehyde
T2264 217-234 CHEBI:62956 denotes sodium cacodylate
T2265 235-241 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T2266 295-299 CHEBI:9754 denotes Tris
T2267 300-308 CHEBI_CHMO_EXT:buffer_process denotes buffered
T2268 309-315 CHEBI_EXT:saline_solution denotes saline
T2269 323-327 CHEBI:9754 denotes Tris
T2270 336-340 CHEBI:26710 denotes NaCl
T2271 364-369 CHEBI:18059 denotes lipid
T2272 370-379 GO:0016020 denotes membranes
T2273 408-474 CHEBI:52029 denotes 1,1'-dioctadecyl-3,3,3',3'-tetramethylindocarbocyanine perchlorate
T2274 477-480 CHEBI:52029 denotes DiI
T2275 482-488 CHEBI:52029 denotes DiIC18
T2276 490-499 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T2277 500-506 CHEBI_SO_EXT:molecular_probe denotes Probes
T2278 583-587 CHEBI:9754 denotes Tris
T2279 588-596 CHEBI_CHMO_EXT:buffer_process denotes buffered
T2280 597-603 CHEBI_EXT:saline_solution denotes saline
T2281 609-616 GO:0005634 denotes nucleic
T2282 609-622 CHEBI_SO_EXT:nucleic_acid denotes nucleic acids
T2283 695-704 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T2284 705-711 CHEBI_SO_EXT:molecular_probe denotes Probes