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MMU2 speed congenic strains\nThe B62D strain exhibited the largest (P \u003c 0.0001) decreases in body weight of any B6.CAST congenic (Additional File 3). Both sexes had reductions in weight at 2 (2WK), 3 (3WK), 6 (6WK) and 9 (9WK) weeks of age compared to control B6C mice (Figure 3). Despite large decreases in body weight, no differences in growth rates (G26, weight gain from 2 to 6 weeks and G29, weight gain from 2 to 9 weeks) were observed (Additional File 3). Therefore, the B62D unique region (Region V) harbors either an early-growth QTL or maternal genotype effect which produces a distinct decrease in body weight prior to 2WK. These effects are evident in the growth curves for both sexes of each strain (Figure 3). Additionally, B62D mice displayed significantly shorter tail lengths despite no difference in naso-anal length (NA) (Table 2).\nIn contrast, B62M mice displayed small decreases in body weights and growth (male 9WK was significant, female 6WK and 9WK were suggestive at P \u003c 0.05) and significant decreases in NA (male P = 0.0152) and tail length (Additional File 3 and Table 2). The decrease in NA in B62M mice is surprising since the 2M donor region is entirely nested within the 2D donor region and B62D mice showed no difference in NA (Figure 2). These data indicate the presence of three QTL with the 2D unique region. Two of which are disjoined by the B62M and B62D strains and additively decrease body weight and tail length, but not NA. The third QTL, located within the B62D unique region (Region V), increases NA canceling the effects of the B62M QTL (Region IV) decreasing NA.\nB62PM females had decreases in all growth-related traits except 2WK and 3WK, while no differences were seen in males (Additional File 3). Similarly, only B62P females and not males showed significant decreases in 9WK, G26 and G29 (Additional File 3), indicating these two strains share a female specific growth QTL (Region II).\nIn the original genome scan body fat percentage as determined by chemical compositional analysis was not linked to markers on MMU2 [24]. However, since numerous obesity QTL have been found on MMU2 [2], some of which were discovered in B6 by CAST crosses [9,25], we chose to measure dissected fat pad weights as a more sensitive measure of adiposity.\nTable 2 lists the weights of gonadal (GFP), femoral (FFP), mesenteric (MFP) and retroperitoneal (RFP) fat pads, along with total fat pad weight (sum of the four fat pads), adiposity index (AI = TF/weight at sacrifice (WSAC)) and body mass index (BMI = WSAC/NA2 *100) for each MMU2 congenic strain. Similar to large differences in body weight the B62D strain displayed highly significant decreases in adiposity. B62D was the only strain where both sexes had significant decreases in TF, AI and BMI. Interestingly, no difference in adiposity was seen in B62M mice. This discordance indicates the leanness promoting QTL is located in the B62D unique region (Region V). Only minor differences in various fat pad weights were observed for the B62P and B62PM strains (Table 2)."}
craft-ca-core-ex-dev
{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T6838","span":{"begin":100,"end":104},"obj":"UBERON_EXT:body"},{"id":"T6839","span":{"begin":271,"end":275},"obj":"NCBITaxon:10088"},{"id":"T6840","span":{"begin":315,"end":319},"obj":"UBERON_EXT:body"},{"id":"T6841","span":{"begin":346,"end":352},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T6842","span":{"begin":539,"end":545},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T6843","span":{"begin":546,"end":549},"obj":"SO_EXT:0000771"},{"id":"T6844","span":{"begin":562,"end":570},"obj":"SO_EXT:genotype_or_entity_with_genotype"},{"id":"T6845","span":{"begin":616,"end":620},"obj":"UBERON_EXT:body"},{"id":"T6846","span":{"begin":675,"end":681},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T6847","span":{"begin":750,"end":754},"obj":"NCBITaxon:10088"},{"id":"T6848","span":{"begin":787,"end":791},"obj":"UBERON:0002415"},{"id":"T6849","span":{"begin":825,"end":829},"obj":"UBERON:0000004"},{"id":"T6850","span":{"begin":830,"end":834},"obj":"UBERON:0001245"},{"id":"T6851","span":{"begin":876,"end":880},"obj":"NCBITaxon:10088"},{"id":"T6852","span":{"begin":910,"end":914},"obj":"UBERON_EXT:body"},{"id":"T6853","span":{"begin":927,"end":933},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T6854","span":{"begin":935,"end":939},"obj":"PATO_UBERON_EXT:male_or_bearer_of_maleness"},{"id":"T6855","span":{"begin":961,"end":967},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T6856","span":{"begin":1042,"end":1046},"obj":"PATO_UBERON_EXT:male_or_bearer_of_maleness"},{"id":"T6857","span":{"begin":1063,"end":1067},"obj":"UBERON:0002415"},{"id":"T6858","span":{"begin":1135,"end":1139},"obj":"NCBITaxon:10088"},{"id":"T6859","span":{"begin":1235,"end":1239},"obj":"NCBITaxon:10088"},{"id":"T6860","span":{"begin":1321,"end":1324},"obj":"SO_EXT:0000771"},{"id":"T6861","span":{"begin":1432,"end":1436},"obj":"UBERON_EXT:body"},{"id":"T6862","span":{"begin":1448,"end":1452},"obj":"UBERON:0002415"},{"id":"T6863","span":{"begin":1483,"end":1486},"obj":"SO_EXT:0000771"},{"id":"T6864","span":{"begin":1585,"end":1588},"obj":"SO_EXT:0000771"},{"id":"T6865","span":{"begin":1622,"end":1629},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T6866","span":{"begin":1651,"end":1657},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T6867","span":{"begin":1727,"end":1732},"obj":"PATO_UBERON_EXT:male_or_bearer_of_maleness"},{"id":"T6868","span":{"begin":1775,"end":1782},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T6869","span":{"begin":1791,"end":1796},"obj":"PATO_UBERON_EXT:male_or_bearer_of_maleness"},{"id":"T6870","span":{"begin":1904,"end":1910},"obj":"PATO_UBERON_EXT:female_or_bearer_of_femaleness"},{"id":"T6871","span":{"begin":1920,"end":1926},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T6872","span":{"begin":1927,"end":1930},"obj":"SO_EXT:0000771"},{"id":"T6873","span":{"begin":1960,"end":1966},"obj":"SO_EXT:0001026"},{"id":"T6874","span":{"begin":1972,"end":1976},"obj":"UBERON_EXT:body"},{"id":"T6875","span":{"begin":1977,"end":1980},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T6876","span":{"begin":2009,"end":2017},"obj":"CHEBI_EXT:chemical_substance_or_polyatomic_entity"},{"id":"T6877","span":{"begin":2059,"end":2066},"obj":"CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag"},{"id":"T6878","span":{"begin":2113,"end":2116},"obj":"SO_EXT:0000771"},{"id":"T6879","span":{"begin":2236,"end":2239},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T6880","span":{"begin":2236,"end":2243},"obj":"UBERON:0003916"},{"id":"T6881","span":{"begin":2323,"end":2330},"obj":"_FRAGMENT"},{"id":"T6882","span":{"begin":2396,"end":2404},"obj":"UBERON:0003428"},{"id":"T6883","span":{"begin":2332,"end":2335},"obj":"UBERON:0003428"},{"id":"T6884","span":{"begin":2338,"end":2345},"obj":"_FRAGMENT"},{"id":"T6885","span":{"begin":2396,"end":2404},"obj":"UBERON:0012283"},{"id":"T6886","span":{"begin":2347,"end":2350},"obj":"UBERON:0012283"},{"id":"T6887","span":{"begin":2353,"end":2363},"obj":"_FRAGMENT"},{"id":"T6888","span":{"begin":2396,"end":2404},"obj":"UBERON:0015143"},{"id":"T6889","span":{"begin":2365,"end":2368},"obj":"UBERON:0015143"},{"id":"T6890","span":{"begin":2374,"end":2389},"obj":"_FRAGMENT"},{"id":"T6891","span":{"begin":2396,"end":2404},"obj":"UBERON:0010411"},{"id":"T6892","span":{"begin":2391,"end":2394},"obj":"UBERON:0010411"},{"id":"T6893","span":{"begin":2396,"end":2399},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T6894","span":{"begin":2423,"end":2426},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T6895","span":{"begin":2423,"end":2430},"obj":"UBERON:0003916"},{"id":"T6896","span":{"begin":2455,"end":2458},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T6897","span":{"begin":2455,"end":2463},"obj":"UBERON:0003916"},{"id":"T6898","span":{"begin":2501,"end":2510},"obj":"GO_EXT:killing"},{"id":"T6899","span":{"begin":2523,"end":2527},"obj":"UBERON_EXT:body"},{"id":"T6900","span":{"begin":2624,"end":2628},"obj":"UBERON_EXT:body"},{"id":"T6901","span":{"begin":2851,"end":2855},"obj":"NCBITaxon:10088"},{"id":"T6902","span":{"begin":2907,"end":2910},"obj":"SO_EXT:0000771"},{"id":"T6903","span":{"begin":2994,"end":2997},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T6904","span":{"begin":2994,"end":3001},"obj":"UBERON:0003916"}],"relations":[{"id":"R1375","pred":"_lexicallyChainedTo","subj":"T6885","obj":"T6884"},{"id":"R1376","pred":"_lexicallyChainedTo","subj":"T6888","obj":"T6887"},{"id":"R1377","pred":"_lexicallyChainedTo","subj":"T6891","obj":"T6890"},{"id":"R1374","pred":"_lexicallyChainedTo","subj":"T6882","obj":"T6881"}],"text":"B6.CAST MMU2 speed congenic strains\nThe B62D strain exhibited the largest (P \u003c 0.0001) decreases in body weight of any B6.CAST congenic (Additional File 3). Both sexes had reductions in weight at 2 (2WK), 3 (3WK), 6 (6WK) and 9 (9WK) weeks of age compared to control B6C mice (Figure 3). Despite large decreases in body weight, no differences in growth rates (G26, weight gain from 2 to 6 weeks and G29, weight gain from 2 to 9 weeks) were observed (Additional File 3). Therefore, the B62D unique region (Region V) harbors either an early-growth QTL or maternal genotype effect which produces a distinct decrease in body weight prior to 2WK. These effects are evident in the growth curves for both sexes of each strain (Figure 3). Additionally, B62D mice displayed significantly shorter tail lengths despite no difference in naso-anal length (NA) (Table 2).\nIn contrast, B62M mice displayed small decreases in body weights and growth (male 9WK was significant, female 6WK and 9WK were suggestive at P \u003c 0.05) and significant decreases in NA (male P = 0.0152) and tail length (Additional File 3 and Table 2). The decrease in NA in B62M mice is surprising since the 2M donor region is entirely nested within the 2D donor region and B62D mice showed no difference in NA (Figure 2). These data indicate the presence of three QTL with the 2D unique region. Two of which are disjoined by the B62M and B62D strains and additively decrease body weight and tail length, but not NA. The third QTL, located within the B62D unique region (Region V), increases NA canceling the effects of the B62M QTL (Region IV) decreasing NA.\nB62PM females had decreases in all growth-related traits except 2WK and 3WK, while no differences were seen in males (Additional File 3). Similarly, only B62P females and not males showed significant decreases in 9WK, G26 and G29 (Additional File 3), indicating these two strains share a female specific growth QTL (Region II).\nIn the original genome scan body fat percentage as determined by chemical compositional analysis was not linked to markers on MMU2 [24]. However, since numerous obesity QTL have been found on MMU2 [2], some of which were discovered in B6 by CAST crosses [9,25], we chose to measure dissected fat pad weights as a more sensitive measure of adiposity.\nTable 2 lists the weights of gonadal (GFP), femoral (FFP), mesenteric (MFP) and retroperitoneal (RFP) fat pads, along with total fat pad weight (sum of the four fat pads), adiposity index (AI = TF/weight at sacrifice (WSAC)) and body mass index (BMI = WSAC/NA2 *100) for each MMU2 congenic strain. Similar to large differences in body weight the B62D strain displayed highly significant decreases in adiposity. B62D was the only strain where both sexes had significant decreases in TF, AI and BMI. Interestingly, no difference in adiposity was seen in B62M mice. This discordance indicates the leanness promoting QTL is located in the B62D unique region (Region V). Only minor differences in various fat pad weights were observed for the B62P and B62PM strains (Table 2)."}
craft-ca-core-dev
{"project":"craft-ca-core-dev","denotations":[{"id":"T6776","span":{"begin":271,"end":275},"obj":"NCBITaxon:10088"},{"id":"T6777","span":{"begin":546,"end":549},"obj":"SO:0000771"},{"id":"T6778","span":{"begin":750,"end":754},"obj":"NCBITaxon:10088"},{"id":"T6779","span":{"begin":787,"end":791},"obj":"UBERON:0002415"},{"id":"T6780","span":{"begin":825,"end":829},"obj":"UBERON:0000004"},{"id":"T6781","span":{"begin":830,"end":834},"obj":"UBERON:0001245"},{"id":"T6782","span":{"begin":876,"end":880},"obj":"NCBITaxon:10088"},{"id":"T6783","span":{"begin":1063,"end":1067},"obj":"UBERON:0002415"},{"id":"T6784","span":{"begin":1135,"end":1139},"obj":"NCBITaxon:10088"},{"id":"T6785","span":{"begin":1235,"end":1239},"obj":"NCBITaxon:10088"},{"id":"T6786","span":{"begin":1321,"end":1324},"obj":"SO:0000771"},{"id":"T6787","span":{"begin":1448,"end":1452},"obj":"UBERON:0002415"},{"id":"T6788","span":{"begin":1483,"end":1486},"obj":"SO:0000771"},{"id":"T6789","span":{"begin":1585,"end":1588},"obj":"SO:0000771"},{"id":"T6790","span":{"begin":1927,"end":1930},"obj":"SO:0000771"},{"id":"T6791","span":{"begin":1960,"end":1966},"obj":"SO:0001026"},{"id":"T6792","span":{"begin":2113,"end":2116},"obj":"SO:0000771"},{"id":"T6793","span":{"begin":2236,"end":2243},"obj":"UBERON:0003916"},{"id":"T6794","span":{"begin":2323,"end":2330},"obj":"_FRAGMENT"},{"id":"T6795","span":{"begin":2396,"end":2404},"obj":"UBERON:0003428"},{"id":"T6796","span":{"begin":2332,"end":2335},"obj":"UBERON:0003428"},{"id":"T6797","span":{"begin":2338,"end":2345},"obj":"_FRAGMENT"},{"id":"T6798","span":{"begin":2396,"end":2404},"obj":"UBERON:0012283"},{"id":"T6799","span":{"begin":2347,"end":2350},"obj":"UBERON:0012283"},{"id":"T6800","span":{"begin":2353,"end":2363},"obj":"_FRAGMENT"},{"id":"T6801","span":{"begin":2396,"end":2404},"obj":"UBERON:0015143"},{"id":"T6802","span":{"begin":2365,"end":2368},"obj":"UBERON:0015143"},{"id":"T6803","span":{"begin":2374,"end":2389},"obj":"_FRAGMENT"},{"id":"T6804","span":{"begin":2396,"end":2404},"obj":"UBERON:0010411"},{"id":"T6805","span":{"begin":2391,"end":2394},"obj":"UBERON:0010411"},{"id":"T6806","span":{"begin":2423,"end":2430},"obj":"UBERON:0003916"},{"id":"T6807","span":{"begin":2455,"end":2463},"obj":"UBERON:0003916"},{"id":"T6808","span":{"begin":2851,"end":2855},"obj":"NCBITaxon:10088"},{"id":"T6809","span":{"begin":2907,"end":2910},"obj":"SO:0000771"},{"id":"T6810","span":{"begin":2994,"end":3001},"obj":"UBERON:0003916"}],"relations":[{"id":"R1371","pred":"_lexicallyChainedTo","subj":"T6798","obj":"T6797"},{"id":"R1372","pred":"_lexicallyChainedTo","subj":"T6801","obj":"T6800"},{"id":"R1373","pred":"_lexicallyChainedTo","subj":"T6804","obj":"T6803"},{"id":"R1370","pred":"_lexicallyChainedTo","subj":"T6795","obj":"T6794"}],"text":"B6.CAST MMU2 speed congenic strains\nThe B62D strain exhibited the largest (P \u003c 0.0001) decreases in body weight of any B6.CAST congenic (Additional File 3). Both sexes had reductions in weight at 2 (2WK), 3 (3WK), 6 (6WK) and 9 (9WK) weeks of age compared to control B6C mice (Figure 3). Despite large decreases in body weight, no differences in growth rates (G26, weight gain from 2 to 6 weeks and G29, weight gain from 2 to 9 weeks) were observed (Additional File 3). Therefore, the B62D unique region (Region V) harbors either an early-growth QTL or maternal genotype effect which produces a distinct decrease in body weight prior to 2WK. These effects are evident in the growth curves for both sexes of each strain (Figure 3). Additionally, B62D mice displayed significantly shorter tail lengths despite no difference in naso-anal length (NA) (Table 2).\nIn contrast, B62M mice displayed small decreases in body weights and growth (male 9WK was significant, female 6WK and 9WK were suggestive at P \u003c 0.05) and significant decreases in NA (male P = 0.0152) and tail length (Additional File 3 and Table 2). The decrease in NA in B62M mice is surprising since the 2M donor region is entirely nested within the 2D donor region and B62D mice showed no difference in NA (Figure 2). These data indicate the presence of three QTL with the 2D unique region. Two of which are disjoined by the B62M and B62D strains and additively decrease body weight and tail length, but not NA. The third QTL, located within the B62D unique region (Region V), increases NA canceling the effects of the B62M QTL (Region IV) decreasing NA.\nB62PM females had decreases in all growth-related traits except 2WK and 3WK, while no differences were seen in males (Additional File 3). Similarly, only B62P females and not males showed significant decreases in 9WK, G26 and G29 (Additional File 3), indicating these two strains share a female specific growth QTL (Region II).\nIn the original genome scan body fat percentage as determined by chemical compositional analysis was not linked to markers on MMU2 [24]. However, since numerous obesity QTL have been found on MMU2 [2], some of which were discovered in B6 by CAST crosses [9,25], we chose to measure dissected fat pad weights as a more sensitive measure of adiposity.\nTable 2 lists the weights of gonadal (GFP), femoral (FFP), mesenteric (MFP) and retroperitoneal (RFP) fat pads, along with total fat pad weight (sum of the four fat pads), adiposity index (AI = TF/weight at sacrifice (WSAC)) and body mass index (BMI = WSAC/NA2 *100) for each MMU2 congenic strain. Similar to large differences in body weight the B62D strain displayed highly significant decreases in adiposity. B62D was the only strain where both sexes had significant decreases in TF, AI and BMI. Interestingly, no difference in adiposity was seen in B62M mice. This discordance indicates the leanness promoting QTL is located in the B62D unique region (Region V). Only minor differences in various fat pad weights were observed for the B62P and B62PM strains (Table 2)."}