PMC:1482699 / 45370-45803
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T26935 | 0-8 | NN | denotes | Sequence |
T26936 | 9-17 | NN | denotes | analysis |
T26937 | 17-132 | sentence | denotes | B6 mRNA sequences for each gene were downloaded from the May 2004 (mm5) UCSC (NCBI Build 33) genome assembly [28]. |
T26938 | 18-20 | NN | denotes | B6 |
T26939 | 26-35 | NNS | denotes | sequences |
T26940 | 21-25 | NN | denotes | mRNA |
T26941 | 55-65 | VBN | denotes | downloaded |
T26942 | 36-39 | IN | denotes | for |
T26943 | 40-44 | DT | denotes | each |
T26944 | 45-49 | NN | denotes | gene |
T26945 | 50-54 | VBD | denotes | were |
T26946 | 66-70 | IN | denotes | from |
T26947 | 71-74 | DT | denotes | the |
T26948 | 118-126 | NN | denotes | assembly |
T26949 | 75-78 | NNP | denotes | May |
T26950 | 79-83 | CD | denotes | 2004 |
T26951 | 84-85 | -LRB- | denotes | ( |
T26952 | 85-88 | NN | denotes | mm5 |
T26953 | 88-89 | -RRB- | denotes | ) |
T26954 | 90-94 | NNP | denotes | UCSC |
T26955 | 95-96 | -LRB- | denotes | ( |
T26956 | 101-106 | NNP | denotes | Build |
T26957 | 96-100 | NNP | denotes | NCBI |
T26958 | 107-109 | CD | denotes | 33 |
T26959 | 109-110 | -RRB- | denotes | ) |
T26960 | 111-117 | NN | denotes | genome |
T26961 | 127-128 | -LRB- | denotes | [ |
T26962 | 128-130 | CD | denotes | 28 |
T26963 | 130-131 | -RRB- | denotes | ] |
T26964 | 131-132 | . | denotes | . |
T26965 | 132-284 | sentence | denotes | These sequences were imported along with all CAST sequence traces into the SeqMan sequence assembly program (DNASTAR) and manually curated for quality. |
T26966 | 133-138 | DT | denotes | These |
T26967 | 139-148 | NNS | denotes | sequences |
T26968 | 154-162 | VBN | denotes | imported |
T26969 | 149-153 | VBD | denotes | were |
T26970 | 163-168 | IN | denotes | along |
T26971 | 169-173 | IN | denotes | with |
T26972 | 174-177 | DT | denotes | all |
T26973 | 192-198 | NNS | denotes | traces |
T26974 | 178-182 | NN | denotes | CAST |
T26975 | 183-191 | NN | denotes | sequence |
T26976 | 199-203 | IN | denotes | into |
T26977 | 204-207 | DT | denotes | the |
T26978 | 233-240 | NN | denotes | program |
T26979 | 208-214 | NNP | denotes | SeqMan |
T26980 | 215-223 | NN | denotes | sequence |
T26981 | 224-232 | NN | denotes | assembly |
T26982 | 241-242 | -LRB- | denotes | ( |
T26983 | 242-249 | NNP | denotes | DNASTAR |
T26984 | 249-250 | -RRB- | denotes | ) |
T26985 | 251-254 | CC | denotes | and |
T26986 | 255-263 | RB | denotes | manually |
T26987 | 264-271 | VBN | denotes | curated |
T26988 | 272-275 | IN | denotes | for |
T26989 | 276-283 | NN | denotes | quality |
T26990 | 283-284 | . | denotes | . |
T26991 | 284-321 | sentence | denotes | Poor quality reads were resequenced. |
T26992 | 285-289 | JJ | denotes | Poor |
T26993 | 290-297 | NN | denotes | quality |
T26994 | 298-303 | NNS | denotes | reads |
T26995 | 309-320 | VBN | denotes | resequenced |
T26996 | 304-308 | VBD | denotes | were |
T26997 | 320-321 | . | denotes | . |
T26998 | 321-433 | sentence | denotes | Individual contigs were created for each gene and polymorphisms were detected and curated by manual inspection. |
T26999 | 322-332 | JJ | denotes | Individual |
T27000 | 333-340 | NNS | denotes | contigs |
T27001 | 346-353 | VBN | denotes | created |
T27002 | 341-345 | VBD | denotes | were |
T27003 | 354-357 | IN | denotes | for |
T27004 | 358-362 | DT | denotes | each |
T27005 | 363-367 | NN | denotes | gene |
T27006 | 368-371 | CC | denotes | and |
T27007 | 372-385 | NNS | denotes | polymorphisms |
T27008 | 391-399 | VBN | denotes | detected |
T27009 | 386-390 | VBD | denotes | were |
T27010 | 400-403 | CC | denotes | and |
T27011 | 404-411 | VBN | denotes | curated |
T27012 | 412-414 | IN | denotes | by |
T27013 | 415-421 | JJ | denotes | manual |
T27014 | 422-432 | NN | denotes | inspection |
T27015 | 432-433 | . | denotes | . |
R8440 | T26935 | T26936 | compound | Sequence,analysis |
R8441 | T26938 | T26939 | compound | B6,sequences |
R8442 | T26939 | T26941 | nsubjpass | sequences,downloaded |
R8443 | T26940 | T26939 | compound | mRNA,sequences |
R8444 | T26942 | T26939 | prep | for,sequences |
R8445 | T26943 | T26944 | det | each,gene |
R8446 | T26944 | T26942 | pobj | gene,for |
R8447 | T26945 | T26941 | auxpass | were,downloaded |
R8448 | T26946 | T26941 | prep | from,downloaded |
R8449 | T26947 | T26948 | det | the,assembly |
R8450 | T26948 | T26946 | pobj | assembly,from |
R8451 | T26949 | T26948 | nmod | May,assembly |
R8452 | T26950 | T26949 | nummod | 2004,May |
R8453 | T26951 | T26952 | punct | (,mm5 |
R8454 | T26952 | T26948 | parataxis | mm5,assembly |
R8455 | T26953 | T26952 | punct | ),mm5 |
R8456 | T26954 | T26948 | nmod | UCSC,assembly |
R8457 | T26955 | T26956 | punct | (,Build |
R8458 | T26956 | T26948 | parataxis | Build,assembly |
R8459 | T26957 | T26956 | compound | NCBI,Build |
R8460 | T26958 | T26956 | nummod | 33,Build |
R8461 | T26959 | T26956 | punct | ),Build |
R8462 | T26960 | T26948 | compound | genome,assembly |
R8463 | T26961 | T26962 | punct | [,28 |
R8464 | T26962 | T26941 | parataxis | 28,downloaded |
R8465 | T26963 | T26962 | punct | ],28 |
R8466 | T26964 | T26941 | punct | .,downloaded |
R8467 | T26966 | T26967 | det | These,sequences |
R8468 | T26967 | T26968 | nsubjpass | sequences,imported |
R8469 | T26969 | T26968 | auxpass | were,imported |
R8470 | T26970 | T26968 | prep | along,imported |
R8471 | T26971 | T26970 | prep | with,along |
R8472 | T26972 | T26973 | det | all,traces |
R8473 | T26973 | T26971 | pobj | traces,with |
R8474 | T26974 | T26975 | compound | CAST,sequence |
R8475 | T26975 | T26973 | compound | sequence,traces |
R8476 | T26976 | T26968 | prep | into,imported |
R8477 | T26977 | T26978 | det | the,program |
R8478 | T26978 | T26976 | pobj | program,into |
R8479 | T26979 | T26978 | compound | SeqMan,program |
R8480 | T26980 | T26981 | compound | sequence,assembly |
R8481 | T26981 | T26978 | compound | assembly,program |
R8482 | T26982 | T26983 | punct | (,DNASTAR |
R8483 | T26983 | T26978 | parataxis | DNASTAR,program |
R8484 | T26984 | T26983 | punct | ),DNASTAR |
R8485 | T26985 | T26968 | cc | and,imported |
R8486 | T26986 | T26987 | advmod | manually,curated |
R8487 | T26987 | T26968 | conj | curated,imported |
R8488 | T26988 | T26987 | prep | for,curated |
R8489 | T26989 | T26988 | pobj | quality,for |
R8490 | T26990 | T26968 | punct | .,imported |
R8491 | T26992 | T26993 | amod | Poor,quality |
R8492 | T26993 | T26994 | compound | quality,reads |
R8493 | T26994 | T26995 | nsubjpass | reads,resequenced |
R8494 | T26996 | T26995 | auxpass | were,resequenced |
R8495 | T26997 | T26995 | punct | .,resequenced |
R8496 | T26999 | T27000 | amod | Individual,contigs |
R8497 | T27000 | T27001 | nsubjpass | contigs,created |
R8498 | T27002 | T27001 | auxpass | were,created |
R8499 | T27003 | T27001 | prep | for,created |
R8500 | T27004 | T27005 | det | each,gene |
R8501 | T27005 | T27003 | pobj | gene,for |
R8502 | T27006 | T27001 | cc | and,created |
R8503 | T27007 | T27008 | nsubjpass | polymorphisms,detected |
R8504 | T27008 | T27001 | conj | detected,created |
R8505 | T27009 | T27008 | auxpass | were,detected |
R8506 | T27010 | T27008 | cc | and,detected |
R8507 | T27011 | T27008 | conj | curated,detected |
R8508 | T27012 | T27011 | prep | by,curated |
R8509 | T27013 | T27014 | amod | manual,inspection |
R8510 | T27014 | T27012 | pobj | inspection,by |
R8511 | T27015 | T27008 | punct | .,detected |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T26921 | 0-8 | SO_EXT:biological_sequence | denotes | Sequence |
T26922 | 21-25 | CHEBI_SO_EXT:mRNA | denotes | mRNA |
T26923 | 26-35 | SO_EXT:biological_sequence | denotes | sequences |
T26924 | 45-49 | SO_EXT:0000704 | denotes | gene |
T26925 | 111-117 | SO_EXT:0001026 | denotes | genome |
T26926 | 118-126 | SO_EXT:sequence_assembly_entity_or_process | denotes | assembly |
T26927 | 139-148 | SO_EXT:biological_sequence | denotes | sequences |
T26928 | 183-191 | SO_EXT:biological_sequence | denotes | sequence |
T26929 | 215-223 | SO_EXT:biological_sequence | denotes | sequence |
T26930 | 224-232 | SO_EXT:sequence_assembly_entity_or_process | denotes | assembly |
T26931 | 298-303 | SO_EXT:0000150 | denotes | reads |
T26932 | 333-340 | SO_EXT:0000149 | denotes | contigs |
T26933 | 363-367 | SO_EXT:0000704 | denotes | gene |
T26934 | 372-385 | SO_EXT:polymorphism | denotes | polymorphisms |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T26916 | 45-49 | SO:0000704 | denotes | gene |
T26917 | 111-117 | SO:0001026 | denotes | genome |
T26918 | 298-303 | SO:0000150 | denotes | reads |
T26919 | 333-340 | SO:0000149 | denotes | contigs |
T26920 | 363-367 | SO:0000704 | denotes | gene |