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PMC:1482699 / 45370-45803 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T26935 0-8 NN denotes Sequence
T26936 9-17 NN denotes analysis
T26937 17-132 sentence denotes B6 mRNA sequences for each gene were downloaded from the May 2004 (mm5) UCSC (NCBI Build 33) genome assembly [28].
T26938 18-20 NN denotes B6
T26939 26-35 NNS denotes sequences
T26940 21-25 NN denotes mRNA
T26941 55-65 VBN denotes downloaded
T26942 36-39 IN denotes for
T26943 40-44 DT denotes each
T26944 45-49 NN denotes gene
T26945 50-54 VBD denotes were
T26946 66-70 IN denotes from
T26947 71-74 DT denotes the
T26948 118-126 NN denotes assembly
T26949 75-78 NNP denotes May
T26950 79-83 CD denotes 2004
T26951 84-85 -LRB- denotes (
T26952 85-88 NN denotes mm5
T26953 88-89 -RRB- denotes )
T26954 90-94 NNP denotes UCSC
T26955 95-96 -LRB- denotes (
T26956 101-106 NNP denotes Build
T26957 96-100 NNP denotes NCBI
T26958 107-109 CD denotes 33
T26959 109-110 -RRB- denotes )
T26960 111-117 NN denotes genome
T26961 127-128 -LRB- denotes [
T26962 128-130 CD denotes 28
T26963 130-131 -RRB- denotes ]
T26964 131-132 . denotes .
T26965 132-284 sentence denotes These sequences were imported along with all CAST sequence traces into the SeqMan sequence assembly program (DNASTAR) and manually curated for quality.
T26966 133-138 DT denotes These
T26967 139-148 NNS denotes sequences
T26968 154-162 VBN denotes imported
T26969 149-153 VBD denotes were
T26970 163-168 IN denotes along
T26971 169-173 IN denotes with
T26972 174-177 DT denotes all
T26973 192-198 NNS denotes traces
T26974 178-182 NN denotes CAST
T26975 183-191 NN denotes sequence
T26976 199-203 IN denotes into
T26977 204-207 DT denotes the
T26978 233-240 NN denotes program
T26979 208-214 NNP denotes SeqMan
T26980 215-223 NN denotes sequence
T26981 224-232 NN denotes assembly
T26982 241-242 -LRB- denotes (
T26983 242-249 NNP denotes DNASTAR
T26984 249-250 -RRB- denotes )
T26985 251-254 CC denotes and
T26986 255-263 RB denotes manually
T26987 264-271 VBN denotes curated
T26988 272-275 IN denotes for
T26989 276-283 NN denotes quality
T26990 283-284 . denotes .
T26991 284-321 sentence denotes Poor quality reads were resequenced.
T26992 285-289 JJ denotes Poor
T26993 290-297 NN denotes quality
T26994 298-303 NNS denotes reads
T26995 309-320 VBN denotes resequenced
T26996 304-308 VBD denotes were
T26997 320-321 . denotes .
T26998 321-433 sentence denotes Individual contigs were created for each gene and polymorphisms were detected and curated by manual inspection.
T26999 322-332 JJ denotes Individual
T27000 333-340 NNS denotes contigs
T27001 346-353 VBN denotes created
T27002 341-345 VBD denotes were
T27003 354-357 IN denotes for
T27004 358-362 DT denotes each
T27005 363-367 NN denotes gene
T27006 368-371 CC denotes and
T27007 372-385 NNS denotes polymorphisms
T27008 391-399 VBN denotes detected
T27009 386-390 VBD denotes were
T27010 400-403 CC denotes and
T27011 404-411 VBN denotes curated
T27012 412-414 IN denotes by
T27013 415-421 JJ denotes manual
T27014 422-432 NN denotes inspection
T27015 432-433 . denotes .
R8440 T26935 T26936 compound Sequence,analysis
R8441 T26938 T26939 compound B6,sequences
R8442 T26939 T26941 nsubjpass sequences,downloaded
R8443 T26940 T26939 compound mRNA,sequences
R8444 T26942 T26939 prep for,sequences
R8445 T26943 T26944 det each,gene
R8446 T26944 T26942 pobj gene,for
R8447 T26945 T26941 auxpass were,downloaded
R8448 T26946 T26941 prep from,downloaded
R8449 T26947 T26948 det the,assembly
R8450 T26948 T26946 pobj assembly,from
R8451 T26949 T26948 nmod May,assembly
R8452 T26950 T26949 nummod 2004,May
R8453 T26951 T26952 punct (,mm5
R8454 T26952 T26948 parataxis mm5,assembly
R8455 T26953 T26952 punct ),mm5
R8456 T26954 T26948 nmod UCSC,assembly
R8457 T26955 T26956 punct (,Build
R8458 T26956 T26948 parataxis Build,assembly
R8459 T26957 T26956 compound NCBI,Build
R8460 T26958 T26956 nummod 33,Build
R8461 T26959 T26956 punct ),Build
R8462 T26960 T26948 compound genome,assembly
R8463 T26961 T26962 punct [,28
R8464 T26962 T26941 parataxis 28,downloaded
R8465 T26963 T26962 punct ],28
R8466 T26964 T26941 punct .,downloaded
R8467 T26966 T26967 det These,sequences
R8468 T26967 T26968 nsubjpass sequences,imported
R8469 T26969 T26968 auxpass were,imported
R8470 T26970 T26968 prep along,imported
R8471 T26971 T26970 prep with,along
R8472 T26972 T26973 det all,traces
R8473 T26973 T26971 pobj traces,with
R8474 T26974 T26975 compound CAST,sequence
R8475 T26975 T26973 compound sequence,traces
R8476 T26976 T26968 prep into,imported
R8477 T26977 T26978 det the,program
R8478 T26978 T26976 pobj program,into
R8479 T26979 T26978 compound SeqMan,program
R8480 T26980 T26981 compound sequence,assembly
R8481 T26981 T26978 compound assembly,program
R8482 T26982 T26983 punct (,DNASTAR
R8483 T26983 T26978 parataxis DNASTAR,program
R8484 T26984 T26983 punct ),DNASTAR
R8485 T26985 T26968 cc and,imported
R8486 T26986 T26987 advmod manually,curated
R8487 T26987 T26968 conj curated,imported
R8488 T26988 T26987 prep for,curated
R8489 T26989 T26988 pobj quality,for
R8490 T26990 T26968 punct .,imported
R8491 T26992 T26993 amod Poor,quality
R8492 T26993 T26994 compound quality,reads
R8493 T26994 T26995 nsubjpass reads,resequenced
R8494 T26996 T26995 auxpass were,resequenced
R8495 T26997 T26995 punct .,resequenced
R8496 T26999 T27000 amod Individual,contigs
R8497 T27000 T27001 nsubjpass contigs,created
R8498 T27002 T27001 auxpass were,created
R8499 T27003 T27001 prep for,created
R8500 T27004 T27005 det each,gene
R8501 T27005 T27003 pobj gene,for
R8502 T27006 T27001 cc and,created
R8503 T27007 T27008 nsubjpass polymorphisms,detected
R8504 T27008 T27001 conj detected,created
R8505 T27009 T27008 auxpass were,detected
R8506 T27010 T27008 cc and,detected
R8507 T27011 T27008 conj curated,detected
R8508 T27012 T27011 prep by,curated
R8509 T27013 T27014 amod manual,inspection
R8510 T27014 T27012 pobj inspection,by
R8511 T27015 T27008 punct .,detected

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T26921 0-8 SO_EXT:biological_sequence denotes Sequence
T26922 21-25 CHEBI_SO_EXT:mRNA denotes mRNA
T26923 26-35 SO_EXT:biological_sequence denotes sequences
T26924 45-49 SO_EXT:0000704 denotes gene
T26925 111-117 SO_EXT:0001026 denotes genome
T26926 118-126 SO_EXT:sequence_assembly_entity_or_process denotes assembly
T26927 139-148 SO_EXT:biological_sequence denotes sequences
T26928 183-191 SO_EXT:biological_sequence denotes sequence
T26929 215-223 SO_EXT:biological_sequence denotes sequence
T26930 224-232 SO_EXT:sequence_assembly_entity_or_process denotes assembly
T26931 298-303 SO_EXT:0000150 denotes reads
T26932 333-340 SO_EXT:0000149 denotes contigs
T26933 363-367 SO_EXT:0000704 denotes gene
T26934 372-385 SO_EXT:polymorphism denotes polymorphisms

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T26916 45-49 SO:0000704 denotes gene
T26917 111-117 SO:0001026 denotes genome
T26918 298-303 SO:0000150 denotes reads
T26919 333-340 SO:0000149 denotes contigs
T26920 363-367 SO:0000704 denotes gene