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Id Subject Object Predicate Lexical cue
T13271 0-3 NN denotes MMU
T13272 3-4 CD denotes 2
T13273 46-56 NN denotes sequencing
T13274 4-6 , denotes ,
T13275 6-7 CD denotes 9
T13276 7-9 , denotes ,
T13277 9-11 CD denotes 11
T13278 12-15 CC denotes and
T13279 16-18 CD denotes 17
T13280 19-21 NN denotes hg
T13281 22-30 NN denotes modifier
T13282 31-40 NN denotes candidate
T13283 41-45 NN denotes gene
T13284 56-270 sentence denotes The HG phenotype is due to the deletion of Socs2, therefore we reasoned that QTL on MMU2, 9, 11 and 17 interacting with hg possibly represent variation within genes participating in various aspects of Gh function.
T13285 57-60 DT denotes The
T13286 64-73 NN denotes phenotype
T13287 61-63 NN denotes HG
T13288 74-76 VBZ denotes is
T13289 120-128 VBD denotes reasoned
T13290 77-80 IN denotes due
T13291 81-83 IN denotes to
T13292 84-87 DT denotes the
T13293 88-96 NN denotes deletion
T13294 97-99 IN denotes of
T13295 100-105 NN denotes Socs2
T13296 105-107 , denotes ,
T13297 107-116 RB denotes therefore
T13298 117-119 PRP denotes we
T13299 129-133 IN denotes that
T13300 189-198 VBP denotes represent
T13301 134-137 NN denotes QTL
T13302 138-140 IN denotes on
T13303 141-144 NN denotes MMU
T13304 144-145 CD denotes 2
T13305 145-147 , denotes ,
T13306 147-148 CD denotes 9
T13307 148-150 , denotes ,
T13308 150-152 CD denotes 11
T13309 153-156 CC denotes and
T13310 157-159 CD denotes 17
T13311 160-171 VBG denotes interacting
T13312 172-176 IN denotes with
T13313 177-179 NN denotes hg
T13314 180-188 RB denotes possibly
T13315 199-208 NN denotes variation
T13316 209-215 IN denotes within
T13317 216-221 NNS denotes genes
T13318 222-235 VBG denotes participating
T13319 236-238 IN denotes in
T13320 239-246 JJ denotes various
T13321 247-254 NNS denotes aspects
T13322 255-257 IN denotes of
T13323 258-260 NN denotes Gh
T13324 261-269 NN denotes function
T13325 269-270 . denotes .
T13326 270-448 sentence denotes To select candidate genes for sequencing we identified genes known to be or potentially involved in Gh signaling, are responsive to Gh or that propagate downstream Gh functions.
T13327 271-273 TO denotes To
T13328 274-280 VB denotes select
T13329 315-325 VBD denotes identified
T13330 281-290 NN denotes candidate
T13331 291-296 NNS denotes genes
T13332 297-300 IN denotes for
T13333 301-311 NN denotes sequencing
T13334 312-314 PRP denotes we
T13335 326-331 NNS denotes genes
T13336 332-337 VBN denotes known
T13337 338-340 TO denotes to
T13338 341-343 VB denotes be
T13339 344-346 CC denotes or
T13340 347-358 RB denotes potentially
T13341 359-367 VBN denotes involved
T13342 368-370 IN denotes in
T13343 371-373 NN denotes Gh
T13344 374-383 NN denotes signaling
T13345 383-385 , denotes ,
T13346 385-388 VBP denotes are
T13347 389-399 JJ denotes responsive
T13348 400-402 IN denotes to
T13349 403-405 NN denotes Gh
T13350 406-408 CC denotes or
T13351 409-413 WDT denotes that
T13352 414-423 VBP denotes propagate
T13353 424-434 JJ denotes downstream
T13354 438-447 NNS denotes functions
T13355 435-437 NN denotes Gh
T13356 447-448 . denotes .
T13357 448-661 sentence denotes Forty-four hg modifier candidate genes were identified from primary literature, reviews and book chapters and coordinated using the GenMAPP (Gene MicroArray Pathway Profiler) pathway building software (Figure 5).
T13358 449-454 CD denotes Forty
T13359 455-459 CD denotes four
T13360 454-455 HYPH denotes -
T13361 482-487 NNS denotes genes
T13362 460-462 NN denotes hg
T13363 463-471 NN denotes modifier
T13364 472-481 NN denotes candidate
T13365 493-503 VBN denotes identified
T13366 488-492 VBD denotes were
T13367 504-508 IN denotes from
T13368 509-516 JJ denotes primary
T13369 517-527 NN denotes literature
T13370 527-529 , denotes ,
T13371 529-536 NNS denotes reviews
T13372 537-540 CC denotes and
T13373 541-545 NN denotes book
T13374 546-554 NNS denotes chapters
T13375 555-558 CC denotes and
T13376 559-570 VBN denotes coordinated
T13377 571-576 VBG denotes using
T13378 577-580 DT denotes the
T13379 641-649 NN denotes software
T13380 581-588 NNP denotes GenMAPP
T13381 589-590 -LRB- denotes (
T13382 590-594 NNP denotes Gene
T13383 595-605 NNP denotes MicroArray
T13384 614-622 NNP denotes Profiler
T13385 606-613 NNP denotes Pathway
T13386 622-623 -RRB- denotes )
T13387 624-631 NN denotes pathway
T13388 632-640 NN denotes building
T13389 650-651 -LRB- denotes (
T13390 651-657 NN denotes Figure
T13391 658-659 CD denotes 5
T13392 659-660 -RRB- denotes )
T13393 660-661 . denotes .
T13394 661-825 sentence denotes The coding region of each gene was sequenced from the CAST strain and compared to the publicly available B6 sequence to identify polymorphisms (Additional File 4).
T13395 662-665 DT denotes The
T13396 673-679 NN denotes region
T13397 666-672 NN denotes coding
T13398 697-706 VBN denotes sequenced
T13399 680-682 IN denotes of
T13400 683-687 DT denotes each
T13401 688-692 NN denotes gene
T13402 693-696 VBD denotes was
T13403 707-711 IN denotes from
T13404 712-715 DT denotes the
T13405 721-727 NN denotes strain
T13406 716-720 NN denotes CAST
T13407 728-731 CC denotes and
T13408 732-740 VBN denotes compared
T13409 741-743 IN denotes to
T13410 744-747 DT denotes the
T13411 770-778 NN denotes sequence
T13412 748-756 RB denotes publicly
T13413 757-766 JJ denotes available
T13414 767-769 NN denotes B6
T13415 779-781 TO denotes to
T13416 782-790 VB denotes identify
T13417 791-804 NNS denotes polymorphisms
T13418 805-806 -LRB- denotes (
T13419 817-821 NN denotes File
T13420 806-816 JJ denotes Additional
T13421 822-823 CD denotes 4
T13422 823-824 -RRB- denotes )
T13423 824-825 . denotes .
T13424 825-963 sentence denotes A total of 94.492 kbp was sequenced (75.378 kbp CDS and 19.114 Kbp 5' and 3' untranslated region (UTR)), representing 25,083 amino acids.
T13425 826-827 DT denotes A
T13426 828-833 NN denotes total
T13427 852-861 VBN denotes sequenced
T13428 834-836 IN denotes of
T13429 837-843 CD denotes 94.492
T13430 844-847 NN denotes kbp
T13431 848-851 VBD denotes was
T13432 862-863 -LRB- denotes (
T13433 874-877 NN denotes CDS
T13434 863-869 CD denotes 75.378
T13435 870-873 NN denotes kbp
T13436 878-881 CC denotes and
T13437 882-888 CD denotes 19.114
T13438 889-892 NN denotes Kbp
T13439 916-922 NN denotes region
T13440 893-894 CD denotes 5
T13441 894-895 SYM denotes '
T13442 896-899 CC denotes and
T13443 900-901 CD denotes 3
T13444 901-902 SYM denotes '
T13445 903-915 JJ denotes untranslated
T13446 923-924 -LRB- denotes (
T13447 924-927 NN denotes UTR
T13448 927-928 -RRB- denotes )
T13449 928-929 -RRB- denotes )
T13450 929-931 , denotes ,
T13451 931-943 VBG denotes representing
T13452 944-950 CD denotes 25,083
T13453 957-962 NNS denotes acids
T13454 951-956 NN denotes amino
T13455 962-963 . denotes .
T13456 963-1195 sentence denotes Comparison with the public B6 assembly (May 2004 University of California, Santa Cruz (UCSC [28]) mm5 genome assembly, National Center for Biotechnology Information (NCBI) Build 33) identified 307 polymorphisms between CAST and B6.
T13457 964-974 NN denotes Comparison
T13458 1146-1156 VBN denotes identified
T13459 975-979 IN denotes with
T13460 980-983 DT denotes the
T13461 994-1002 NN denotes assembly
T13462 984-990 JJ denotes public
T13463 991-993 NN denotes B6
T13464 1003-1004 -LRB- denotes (
T13465 1136-1141 NN denotes Build
T13466 1004-1007 NNP denotes May
T13467 1013-1023 NNP denotes University
T13468 1008-1012 CD denotes 2004
T13469 1024-1026 IN denotes of
T13470 1027-1037 NNP denotes California
T13471 1037-1039 , denotes ,
T13472 1039-1044 NNP denotes Santa
T13473 1045-1049 NNP denotes Cruz
T13474 1050-1051 -LRB- denotes (
T13475 1057-1059 CD denotes 28
T13476 1051-1055 NNP denotes UCSC
T13477 1056-1057 -LRB- denotes [
T13478 1059-1060 -RRB- denotes ]
T13479 1060-1061 -RRB- denotes )
T13480 1062-1065 NN denotes mm5
T13481 1073-1081 NN denotes assembly
T13482 1066-1072 NN denotes genome
T13483 1081-1083 , denotes ,
T13484 1083-1091 NNP denotes National
T13485 1092-1098 NNP denotes Center
T13486 1099-1102 IN denotes for
T13487 1103-1116 NNP denotes Biotechnology
T13488 1117-1128 NNP denotes Information
T13489 1129-1130 -LRB- denotes (
T13490 1130-1134 NNP denotes NCBI
T13491 1134-1135 -RRB- denotes )
T13492 1142-1144 CD denotes 33
T13493 1144-1145 -RRB- denotes )
T13494 1157-1160 CD denotes 307
T13495 1161-1174 NNS denotes polymorphisms
T13496 1175-1182 IN denotes between
T13497 1183-1187 NN denotes CAST
T13498 1188-1191 CC denotes and
T13499 1192-1194 NN denotes B6
T13500 1194-1195 . denotes .
T13501 1195-1317 sentence denotes Of these, 295 were single nucleotide polymorphisms (SNP) and 12 were insertions or deletions in CAST (Additional File 4).
T13502 1196-1198 IN denotes Of
T13503 1210-1214 VBD denotes were
T13504 1199-1204 DT denotes these
T13505 1204-1206 , denotes ,
T13506 1206-1209 CD denotes 295
T13507 1215-1221 JJ denotes single
T13508 1233-1246 NNS denotes polymorphisms
T13509 1222-1232 NN denotes nucleotide
T13510 1247-1248 -LRB- denotes (
T13511 1248-1251 NN denotes SNP
T13512 1251-1252 -RRB- denotes )
T13513 1253-1256 CC denotes and
T13514 1257-1259 CD denotes 12
T13515 1260-1264 VBD denotes were
T13516 1265-1275 NNS denotes insertions
T13517 1276-1278 CC denotes or
T13518 1279-1288 NNS denotes deletions
T13519 1289-1291 IN denotes in
T13520 1292-1296 NN denotes CAST
T13521 1297-1298 -LRB- denotes (
T13522 1309-1313 NN denotes File
T13523 1298-1308 JJ denotes Additional
T13524 1314-1315 CD denotes 4
T13525 1315-1316 -RRB- denotes )
T13526 1316-1317 . denotes .
T13527 1317-1384 sentence denotes All 12 insertions or deletions were located within 5' and 3' UTRs.
T13528 1318-1321 PDT denotes All
T13529 1325-1335 NNS denotes insertions
T13530 1322-1324 CD denotes 12
T13531 1354-1361 VBN denotes located
T13532 1336-1338 CC denotes or
T13533 1339-1348 NNS denotes deletions
T13534 1349-1353 VBD denotes were
T13535 1362-1368 IN denotes within
T13536 1369-1370 CD denotes 5
T13537 1379-1383 NNS denotes UTRs
T13538 1370-1371 SYM denotes '
T13539 1372-1375 CC denotes and
T13540 1376-1377 CD denotes 3
T13541 1377-1378 SYM denotes '
T13542 1383-1384 . denotes .
T13543 1384-1479 sentence denotes Fifty-six nonsynonomous SNP (nsSNP) were identified in 14 different genes (Additional File 4).
T13544 1385-1390 CD denotes Fifty
T13545 1391-1394 CD denotes six
T13546 1390-1391 HYPH denotes -
T13547 1409-1412 NN denotes SNP
T13548 1395-1408 JJ denotes nonsynonomous
T13549 1426-1436 VBN denotes identified
T13550 1413-1414 -LRB- denotes (
T13551 1414-1419 NN denotes nsSNP
T13552 1419-1420 -RRB- denotes )
T13553 1421-1425 VBD denotes were
T13554 1437-1439 IN denotes in
T13555 1440-1442 CD denotes 14
T13556 1453-1458 NNS denotes genes
T13557 1443-1452 JJ denotes different
T13558 1459-1460 -LRB- denotes (
T13559 1471-1475 NN denotes File
T13560 1460-1470 JJ denotes Additional
T13561 1476-1477 CD denotes 4
T13562 1477-1478 -RRB- denotes )
T13563 1478-1479 . denotes .
T13564 1479-1751 sentence denotes PolyPhen [29] and SIFT [30] are software programs designed to identify nsSNP which potentially alter protein function by evaluating evolutionary conservation at specific amino acid residues using a multiple sequence alignment of protein sequences homologous to the query.
T13565 1480-1488 NNP denotes PolyPhen
T13566 1508-1511 VBP denotes are
T13567 1489-1490 -LRB- denotes [
T13568 1490-1492 CD denotes 29
T13569 1492-1493 -RRB- denotes ]
T13570 1494-1497 CC denotes and
T13571 1498-1502 NN denotes SIFT
T13572 1503-1504 -LRB- denotes [
T13573 1504-1506 CD denotes 30
T13574 1506-1507 -RRB- denotes ]
T13575 1512-1520 NN denotes software
T13576 1521-1529 NNS denotes programs
T13577 1530-1538 VBN denotes designed
T13578 1539-1541 TO denotes to
T13579 1542-1550 VB denotes identify
T13580 1551-1556 NN denotes nsSNP
T13581 1557-1562 WDT denotes which
T13582 1575-1580 VBP denotes alter
T13583 1563-1574 RB denotes potentially
T13584 1581-1588 NN denotes protein
T13585 1589-1597 NN denotes function
T13586 1598-1600 IN denotes by
T13587 1601-1611 VBG denotes evaluating
T13588 1612-1624 JJ denotes evolutionary
T13589 1625-1637 NN denotes conservation
T13590 1638-1640 IN denotes at
T13591 1641-1649 JJ denotes specific
T13592 1661-1669 NNS denotes residues
T13593 1650-1655 NN denotes amino
T13594 1656-1660 NN denotes acid
T13595 1670-1675 VBG denotes using
T13596 1676-1677 DT denotes a
T13597 1696-1705 NN denotes alignment
T13598 1678-1686 JJ denotes multiple
T13599 1687-1695 NN denotes sequence
T13600 1706-1708 IN denotes of
T13601 1709-1716 NN denotes protein
T13602 1717-1726 NNS denotes sequences
T13603 1727-1737 JJ denotes homologous
T13604 1738-1740 IN denotes to
T13605 1741-1744 DT denotes the
T13606 1745-1750 NN denotes query
T13607 1750-1751 . denotes .
T13608 1751-1916 sentence denotes When applied to our data set PolyPhen, SIFT or both programs predicted that 15 of the 56 nsSNP in 9 different genes would possibly alter protein function (Table 7).
T13609 1752-1756 WRB denotes When
T13610 1757-1764 VBN denotes applied
T13611 1813-1822 VBD denotes predicted
T13612 1765-1767 IN denotes to
T13613 1768-1771 PRP$ denotes our
T13614 1777-1780 NN denotes set
T13615 1772-1776 NNS denotes data
T13616 1781-1789 NNP denotes PolyPhen
T13617 1789-1791 , denotes ,
T13618 1791-1795 NNP denotes SIFT
T13619 1796-1798 CC denotes or
T13620 1799-1803 DT denotes both
T13621 1804-1812 NNS denotes programs
T13622 1823-1827 IN denotes that
T13623 1883-1888 VB denotes alter
T13624 1828-1830 CD denotes 15
T13625 1838-1840 CD denotes 56
T13626 1831-1833 IN denotes of
T13627 1834-1837 DT denotes the
T13628 1841-1846 NN denotes nsSNP
T13629 1847-1849 IN denotes in
T13630 1850-1851 CD denotes 9
T13631 1862-1867 NNS denotes genes
T13632 1852-1861 JJ denotes different
T13633 1868-1873 MD denotes would
T13634 1874-1882 RB denotes possibly
T13635 1889-1896 NN denotes protein
T13636 1897-1905 NN denotes function
T13637 1906-1907 -LRB- denotes (
T13638 1907-1912 NN denotes Table
T13639 1913-1914 CD denotes 7
T13640 1914-1915 -RRB- denotes )
T13641 1915-1916 . denotes .
R3987 T13271 T13272 nmod MMU,2
R3988 T13272 T13273 nummod 2,sequencing
R3989 T13274 T13272 punct ", ",2
R3990 T13275 T13272 conj 9,2
R3991 T13276 T13275 punct ", ",9
R3992 T13277 T13275 conj 11,9
R3993 T13278 T13277 cc and,11
R3994 T13279 T13277 conj 17,11
R3995 T13280 T13281 compound hg,modifier
R3996 T13281 T13273 compound modifier,sequencing
R3997 T13282 T13283 compound candidate,gene
R3998 T13283 T13273 compound gene,sequencing
R3999 T13285 T13286 det The,phenotype
R4000 T13286 T13288 nsubj phenotype,is
R4001 T13287 T13286 compound HG,phenotype
R4002 T13288 T13289 ccomp is,reasoned
R4003 T13290 T13288 prep due,is
R4004 T13291 T13290 pcomp to,due
R4005 T13292 T13293 det the,deletion
R4006 T13293 T13290 pobj deletion,due
R4007 T13294 T13293 prep of,deletion
R4008 T13295 T13294 pobj Socs2,of
R4009 T13296 T13289 punct ", ",reasoned
R4010 T13297 T13289 advmod therefore,reasoned
R4011 T13298 T13289 nsubj we,reasoned
R4012 T13299 T13300 mark that,represent
R4013 T13300 T13289 ccomp represent,reasoned
R4014 T13301 T13300 nsubj QTL,represent
R4015 T13302 T13301 prep on,QTL
R4016 T13303 T13304 nmod MMU,2
R4017 T13304 T13302 pobj 2,on
R4018 T13305 T13304 punct ", ",2
R4019 T13306 T13304 conj 9,2
R4020 T13307 T13306 punct ", ",9
R4021 T13308 T13306 conj 11,9
R4022 T13309 T13308 cc and,11
R4023 T13310 T13308 conj 17,11
R4024 T13311 T13301 acl interacting,QTL
R4025 T13312 T13311 prep with,interacting
R4026 T13313 T13312 pobj hg,with
R4027 T13314 T13300 advmod possibly,represent
R4028 T13315 T13300 dobj variation,represent
R4029 T13316 T13315 prep within,variation
R4030 T13317 T13316 pobj genes,within
R4031 T13318 T13317 acl participating,genes
R4032 T13319 T13318 prep in,participating
R4033 T13320 T13321 amod various,aspects
R4034 T13321 T13319 pobj aspects,in
R4035 T13322 T13321 prep of,aspects
R4036 T13323 T13324 compound Gh,function
R4037 T13324 T13322 pobj function,of
R4038 T13325 T13289 punct .,reasoned
R4039 T13327 T13328 aux To,select
R4040 T13328 T13329 advcl select,identified
R4041 T13330 T13331 compound candidate,genes
R4042 T13331 T13328 dobj genes,select
R4043 T13332 T13331 prep for,genes
R4044 T13333 T13332 pobj sequencing,for
R4045 T13334 T13329 nsubj we,identified
R4046 T13335 T13329 dobj genes,identified
R4047 T13336 T13335 acl known,genes
R4048 T13337 T13338 aux to,be
R4049 T13338 T13336 xcomp be,known
R4050 T13339 T13336 cc or,known
R4051 T13340 T13336 conj potentially,known
R4052 T13341 T13340 dep involved,potentially
R4053 T13342 T13341 prep in,involved
R4054 T13343 T13344 compound Gh,signaling
R4055 T13344 T13342 pobj signaling,in
R4056 T13345 T13336 punct ", ",known
R4057 T13346 T13336 conj are,known
R4058 T13347 T13346 acomp responsive,are
R4059 T13348 T13347 prep to,responsive
R4060 T13349 T13348 pobj Gh,to
R4061 T13350 T13346 cc or,are
R4062 T13351 T13352 dep that,propagate
R4063 T13352 T13346 conj propagate,are
R4064 T13353 T13354 amod downstream,functions
R4065 T13354 T13352 dobj functions,propagate
R4066 T13355 T13354 compound Gh,functions
R4067 T13356 T13329 punct .,identified
R4068 T13358 T13359 compound Forty,four
R4069 T13359 T13361 nummod four,genes
R4070 T13360 T13359 punct -,four
R4071 T13361 T13365 nsubjpass genes,identified
R4072 T13362 T13363 compound hg,modifier
R4073 T13363 T13361 compound modifier,genes
R4074 T13364 T13361 compound candidate,genes
R4075 T13366 T13365 auxpass were,identified
R4076 T13367 T13365 prep from,identified
R4077 T13368 T13369 amod primary,literature
R4078 T13369 T13367 pobj literature,from
R4079 T13370 T13369 punct ", ",literature
R4080 T13371 T13369 conj reviews,literature
R4081 T13372 T13371 cc and,reviews
R4082 T13373 T13374 compound book,chapters
R4083 T13374 T13371 conj chapters,reviews
R4084 T13375 T13365 cc and,identified
R4085 T13376 T13365 conj coordinated,identified
R4086 T13377 T13376 advcl using,coordinated
R4087 T13378 T13379 det the,software
R4088 T13379 T13377 dobj software,using
R4089 T13380 T13379 nmod GenMAPP,software
R4090 T13381 T13380 punct (,GenMAPP
R4091 T13382 T13383 compound Gene,MicroArray
R4092 T13383 T13384 compound MicroArray,Profiler
R4093 T13384 T13380 appos Profiler,GenMAPP
R4094 T13385 T13384 compound Pathway,Profiler
R4095 T13386 T13379 punct ),software
R4096 T13387 T13388 compound pathway,building
R4097 T13388 T13379 compound building,software
R4098 T13389 T13390 punct (,Figure
R4099 T13390 T13376 parataxis Figure,coordinated
R4100 T13391 T13390 nummod 5,Figure
R4101 T13392 T13390 punct ),Figure
R4102 T13393 T13365 punct .,identified
R4103 T13395 T13396 det The,region
R4104 T13396 T13398 nsubjpass region,sequenced
R4105 T13397 T13396 compound coding,region
R4106 T13399 T13396 prep of,region
R4107 T13400 T13401 det each,gene
R4108 T13401 T13399 pobj gene,of
R4109 T13402 T13398 auxpass was,sequenced
R4110 T13403 T13398 prep from,sequenced
R4111 T13404 T13405 det the,strain
R4112 T13405 T13403 pobj strain,from
R4113 T13406 T13405 compound CAST,strain
R4114 T13407 T13398 cc and,sequenced
R4115 T13408 T13398 conj compared,sequenced
R4116 T13409 T13408 prep to,compared
R4117 T13410 T13411 det the,sequence
R4118 T13411 T13409 pobj sequence,to
R4119 T13412 T13413 advmod publicly,available
R4120 T13413 T13411 amod available,sequence
R4121 T13414 T13411 compound B6,sequence
R4122 T13415 T13416 aux to,identify
R4123 T13416 T13408 advcl identify,compared
R4124 T13417 T13416 dobj polymorphisms,identify
R4125 T13418 T13419 punct (,File
R4126 T13419 T13408 parataxis File,compared
R4127 T13420 T13419 amod Additional,File
R4128 T13421 T13419 nummod 4,File
R4129 T13422 T13419 punct ),File
R4130 T13423 T13398 punct .,sequenced
R4131 T13425 T13426 det A,total
R4132 T13426 T13427 nsubjpass total,sequenced
R4133 T13428 T13426 prep of,total
R4134 T13429 T13430 nummod 94.492,kbp
R4135 T13430 T13428 pobj kbp,of
R4136 T13431 T13427 auxpass was,sequenced
R4137 T13432 T13433 punct (,CDS
R4138 T13433 T13427 parataxis CDS,sequenced
R4139 T13434 T13435 nummod 75.378,kbp
R4140 T13435 T13433 compound kbp,CDS
R4141 T13436 T13433 cc and,CDS
R4142 T13437 T13438 nummod 19.114,Kbp
R4143 T13438 T13439 nmod Kbp,region
R4144 T13439 T13433 conj region,CDS
R4145 T13440 T13438 nummod 5,Kbp
R4146 T13441 T13440 punct ',5
R4147 T13442 T13438 cc and,Kbp
R4148 T13443 T13438 conj 3,Kbp
R4149 T13444 T13443 punct ',3
R4150 T13445 T13439 amod untranslated,region
R4151 T13446 T13439 punct (,region
R4152 T13447 T13439 appos UTR,region
R4153 T13448 T13439 punct ),region
R4154 T13449 T13433 punct ),CDS
R4155 T13450 T13427 punct ", ",sequenced
R4156 T13451 T13427 advcl representing,sequenced
R4157 T13452 T13453 nummod "25,083",acids
R4158 T13453 T13451 dobj acids,representing
R4159 T13454 T13453 compound amino,acids
R4160 T13455 T13427 punct .,sequenced
R4161 T13457 T13458 nsubj Comparison,identified
R4162 T13459 T13457 prep with,Comparison
R4163 T13460 T13461 det the,assembly
R4164 T13461 T13459 pobj assembly,with
R4165 T13462 T13461 amod public,assembly
R4166 T13463 T13461 compound B6,assembly
R4167 T13464 T13465 punct (,Build
R4168 T13465 T13457 parataxis Build,Comparison
R4169 T13466 T13467 npadvmod May,University
R4170 T13467 T13465 dep University,Build
R4171 T13468 T13466 npadvmod 2004,May
R4172 T13469 T13467 prep of,University
R4173 T13470 T13469 pobj California,of
R4174 T13471 T13467 punct ", ",University
R4175 T13472 T13473 compound Santa,Cruz
R4176 T13473 T13467 npadvmod Cruz,University
R4177 T13474 T13475 punct (,28
R4178 T13475 T13467 parataxis 28,University
R4179 T13476 T13475 dep UCSC,28
R4180 T13477 T13475 punct [,28
R4181 T13478 T13475 punct ],28
R4182 T13479 T13475 punct ),28
R4183 T13480 T13481 compound mm5,assembly
R4184 T13481 T13465 dep assembly,Build
R4185 T13482 T13481 compound genome,assembly
R4186 T13483 T13465 punct ", ",Build
R4187 T13484 T13485 compound National,Center
R4188 T13485 T13465 dep Center,Build
R4189 T13486 T13485 prep for,Center
R4190 T13487 T13488 compound Biotechnology,Information
R4191 T13488 T13486 pobj Information,for
R4192 T13489 T13485 punct (,Center
R4193 T13490 T13485 appos NCBI,Center
R4194 T13491 T13485 punct ),Center
R4195 T13492 T13465 nummod 33,Build
R4196 T13493 T13465 punct ),Build
R4197 T13494 T13495 nummod 307,polymorphisms
R4198 T13495 T13458 dobj polymorphisms,identified
R4199 T13496 T13495 prep between,polymorphisms
R4200 T13497 T13496 pobj CAST,between
R4201 T13498 T13497 cc and,CAST
R4202 T13499 T13497 conj B6,CAST
R4203 T13500 T13458 punct .,identified
R4204 T13502 T13503 prep Of,were
R4205 T13504 T13502 pobj these,Of
R4206 T13505 T13503 punct ", ",were
R4207 T13506 T13503 nsubj 295,were
R4208 T13507 T13508 amod single,polymorphisms
R4209 T13508 T13503 attr polymorphisms,were
R4210 T13509 T13508 compound nucleotide,polymorphisms
R4211 T13510 T13508 punct (,polymorphisms
R4212 T13511 T13508 appos SNP,polymorphisms
R4213 T13512 T13503 punct ),were
R4214 T13513 T13503 cc and,were
R4215 T13514 T13515 nsubj 12,were
R4216 T13515 T13503 conj were,were
R4217 T13516 T13515 attr insertions,were
R4218 T13517 T13516 cc or,insertions
R4219 T13518 T13516 conj deletions,insertions
R4220 T13519 T13516 prep in,insertions
R4221 T13520 T13519 pobj CAST,in
R4222 T13521 T13522 punct (,File
R4223 T13522 T13503 parataxis File,were
R4224 T13523 T13522 amod Additional,File
R4225 T13524 T13522 nummod 4,File
R4226 T13525 T13522 punct ),File
R4227 T13526 T13503 punct .,were
R4228 T13528 T13529 predet All,insertions
R4229 T13529 T13531 nsubjpass insertions,located
R4230 T13530 T13529 nummod 12,insertions
R4231 T13532 T13529 cc or,insertions
R4232 T13533 T13529 conj deletions,insertions
R4233 T13534 T13531 auxpass were,located
R4234 T13535 T13531 prep within,located
R4235 T13536 T13537 nummod 5,UTRs
R4236 T13537 T13535 pobj UTRs,within
R4237 T13538 T13536 punct ',5
R4238 T13539 T13536 cc and,5
R4239 T13540 T13536 conj 3,5
R4240 T13541 T13540 punct ',3
R4241 T13542 T13531 punct .,located
R4242 T13544 T13545 compound Fifty,six
R4243 T13545 T13547 nummod six,SNP
R4244 T13546 T13545 punct -,six
R4245 T13547 T13549 nsubjpass SNP,identified
R4246 T13548 T13547 amod nonsynonomous,SNP
R4247 T13550 T13547 punct (,SNP
R4248 T13551 T13547 appos nsSNP,SNP
R4249 T13552 T13549 punct ),identified
R4250 T13553 T13549 auxpass were,identified
R4251 T13554 T13549 prep in,identified
R4252 T13555 T13556 nummod 14,genes
R4253 T13556 T13554 pobj genes,in
R4254 T13557 T13556 amod different,genes
R4255 T13558 T13559 punct (,File
R4256 T13559 T13549 parataxis File,identified
R4257 T13560 T13559 amod Additional,File
R4258 T13561 T13559 nummod 4,File
R4259 T13562 T13559 punct ),File
R4260 T13563 T13549 punct .,identified
R4261 T13565 T13566 nsubj PolyPhen,are
R4262 T13567 T13568 punct [,29
R4263 T13568 T13565 parataxis 29,PolyPhen
R4264 T13569 T13568 punct ],29
R4265 T13570 T13565 cc and,PolyPhen
R4266 T13571 T13565 conj SIFT,PolyPhen
R4267 T13572 T13573 punct [,30
R4268 T13573 T13571 parataxis 30,SIFT
R4269 T13574 T13573 punct ],30
R4270 T13575 T13576 compound software,programs
R4271 T13576 T13566 attr programs,are
R4272 T13577 T13576 acl designed,programs
R4273 T13578 T13579 aux to,identify
R4274 T13579 T13577 advcl identify,designed
R4275 T13580 T13579 dobj nsSNP,identify
R4276 T13581 T13582 dep which,alter
R4277 T13582 T13580 relcl alter,nsSNP
R4278 T13583 T13582 advmod potentially,alter
R4279 T13584 T13585 compound protein,function
R4280 T13585 T13582 dobj function,alter
R4281 T13586 T13579 prep by,identify
R4282 T13587 T13586 pcomp evaluating,by
R4283 T13588 T13589 amod evolutionary,conservation
R4284 T13589 T13587 dobj conservation,evaluating
R4285 T13590 T13587 prep at,evaluating
R4286 T13591 T13592 amod specific,residues
R4287 T13592 T13590 pobj residues,at
R4288 T13593 T13594 compound amino,acid
R4289 T13594 T13592 compound acid,residues
R4290 T13595 T13587 advcl using,evaluating
R4291 T13596 T13597 det a,alignment
R4292 T13597 T13595 dobj alignment,using
R4293 T13598 T13599 amod multiple,sequence
R4294 T13599 T13597 compound sequence,alignment
R4295 T13600 T13597 prep of,alignment
R4296 T13601 T13602 compound protein,sequences
R4297 T13602 T13600 pobj sequences,of
R4298 T13603 T13602 amod homologous,sequences
R4299 T13604 T13603 prep to,homologous
R4300 T13605 T13606 det the,query
R4301 T13606 T13604 pobj query,to
R4302 T13607 T13566 punct .,are
R4303 T13609 T13610 advmod When,applied
R4304 T13610 T13611 advcl applied,predicted
R4305 T13612 T13610 prep to,applied
R4306 T13613 T13614 poss our,set
R4307 T13614 T13612 pobj set,to
R4308 T13615 T13614 compound data,set
R4309 T13616 T13611 nsubj PolyPhen,predicted
R4310 T13617 T13616 punct ", ",PolyPhen
R4311 T13618 T13616 conj SIFT,PolyPhen
R4312 T13619 T13618 cc or,SIFT
R4313 T13620 T13621 det both,programs
R4314 T13621 T13618 conj programs,SIFT
R4315 T13622 T13623 mark that,alter
R4316 T13623 T13611 ccomp alter,predicted
R4317 T13624 T13625 quantmod 15,56
R4318 T13625 T13628 nummod 56,nsSNP
R4319 T13626 T13625 quantmod of,56
R4320 T13627 T13625 quantmod the,56
R4321 T13628 T13623 nsubj nsSNP,alter
R4322 T13629 T13628 prep in,nsSNP
R4323 T13630 T13631 nummod 9,genes
R4324 T13631 T13629 pobj genes,in
R4325 T13632 T13631 amod different,genes
R4326 T13633 T13623 aux would,alter
R4327 T13634 T13623 advmod possibly,alter
R4328 T13635 T13636 compound protein,function
R4329 T13636 T13623 dobj function,alter
R4330 T13637 T13638 punct (,Table
R4331 T13638 T13611 parataxis Table,predicted
R4332 T13639 T13638 nummod 7,Table
R4333 T13640 T13638 punct ),Table
R4334 T13641 T13611 punct .,predicted

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13214 41-45 SO_EXT:0000704 denotes gene
T13215 88-96 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T13216 100-105 PR_EXT:000015393 denotes Socs2
T13217 134-137 SO_EXT:0000771 denotes QTL
T13218 199-208 SO_EXT:sequence_variation_entity_or_quality denotes variation
T13219 216-221 SO_EXT:0000704 denotes genes
T13220 258-260 CHEBI_GO_PR_EXT:growth_hormone denotes Gh
T13221 291-296 SO_EXT:0000704 denotes genes
T13222 326-331 SO_EXT:0000704 denotes genes
T13223 371-373 CHEBI_GO_PR_EXT:growth_hormone denotes Gh
T13224 371-383 GO:0060396 denotes Gh signaling
T13225 403-405 CHEBI_GO_PR_EXT:growth_hormone denotes Gh
T13226 435-437 CHEBI_GO_PR_EXT:growth_hormone denotes Gh
T13227 482-487 SO_EXT:0000704 denotes genes
T13228 590-594 SO_EXT:0000704 denotes Gene
T13229 666-679 SO_EXT:coding_sequence denotes coding region
T13230 688-692 SO_EXT:0000704 denotes gene
T13231 770-778 SO_EXT:biological_sequence denotes sequence
T13232 791-804 SO_EXT:polymorphism denotes polymorphisms
T13233 845-847 SO_EXT:0000028 denotes bp
T13234 871-873 SO_EXT:0000028 denotes bp
T13235 890-892 SO_EXT:0000028 denotes bp
T13236 893-895 _FRAGMENT denotes 5'
T13237 903-922 SO_EXT:0000204 denotes untranslated region
T13238 924-927 SO_EXT:0000204 denotes UTR
T13239 900-922 SO_EXT:0000205 denotes 3' untranslated region
T13240 900-902 _FRAGMENT denotes 3'
T13241 924-927 SO_EXT:0000205 denotes UTR
T13242 905-915 GO:0006412 denotes translated
T13243 951-962 CHEBI_SO_EXT:amino_acid denotes amino acids
T13244 994-1002 SO_EXT:sequence_assembly_entity_or_process denotes assembly
T13245 1066-1072 SO_EXT:0001026 denotes genome
T13246 1073-1081 SO_EXT:sequence_assembly_entity_or_process denotes assembly
T13247 1161-1174 SO_EXT:polymorphism denotes polymorphisms
T13248 1215-1246 SO_EXT:0000694 denotes single nucleotide polymorphisms
T13249 1222-1232 CHEBI_SO_EXT:nucleotide denotes nucleotide
T13250 1248-1251 SO_EXT:0000694 denotes SNP
T13251 1265-1275 SO_EXT:sequence_insertion_entity_or_process denotes insertions
T13252 1279-1288 SO_EXT:sequence_deletion_entity_or_process denotes deletions
T13253 1325-1335 SO_EXT:sequence_insertion_entity_or_process denotes insertions
T13254 1339-1348 SO_EXT:sequence_deletion_entity_or_process denotes deletions
T13255 1369-1371 _FRAGMENT denotes 5'
T13256 1379-1383 SO_EXT:0000204 denotes UTRs
T13257 1376-1383 SO_EXT:0000205 denotes 3' UTRs
T13258 1395-1408 SO:0001816 denotes nonsynonomous
T13259 1409-1412 SO_EXT:0000694 denotes SNP
T13260 1453-1458 SO_EXT:0000704 denotes genes
T13261 1581-1588 CHEBI_PR_EXT:protein denotes protein
T13262 1612-1637 SO_EXT:biological_conservation_process_or_quality denotes evolutionary conservation
T13263 1650-1660 CHEBI_SO_EXT:amino_acid denotes amino acid
T13264 1661-1669 CHEBI_EXT:residue denotes residues
T13265 1687-1695 SO_EXT:biological_sequence denotes sequence
T13266 1709-1716 CHEBI_PR_EXT:protein denotes protein
T13267 1717-1726 SO_EXT:biological_sequence denotes sequences
T13268 1727-1737 SO:0000857 denotes homologous
T13269 1862-1867 SO_EXT:0000704 denotes genes
T13270 1889-1896 CHEBI_PR_EXT:protein denotes protein
R3983 T13237 T13236 _lexicallyChainedTo untranslated region,5'
R3984 T13238 T13236 _lexicallyChainedTo UTR,5'
R3985 T13241 T13240 _lexicallyChainedTo UTR,3'
R3986 T13256 T13255 _lexicallyChainedTo UTRs,5'

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13183 41-45 SO:0000704 denotes gene
T13184 100-105 PR:000015393 denotes Socs2
T13185 134-137 SO:0000771 denotes QTL
T13186 216-221 SO:0000704 denotes genes
T13187 291-296 SO:0000704 denotes genes
T13188 326-331 SO:0000704 denotes genes
T13189 371-383 GO:0060396 denotes Gh signaling
T13190 482-487 SO:0000704 denotes genes
T13191 590-594 SO:0000704 denotes Gene
T13192 688-692 SO:0000704 denotes gene
T13193 845-847 SO:0000028 denotes bp
T13194 871-873 SO:0000028 denotes bp
T13195 890-892 SO:0000028 denotes bp
T13196 893-895 _FRAGMENT denotes 5'
T13197 903-922 SO:0000204 denotes untranslated region
T13198 924-927 SO:0000204 denotes UTR
T13199 900-922 SO:0000205 denotes 3' untranslated region
T13200 900-902 _FRAGMENT denotes 3'
T13201 924-927 SO:0000205 denotes UTR
T13202 905-915 GO:0006412 denotes translated
T13203 1066-1072 SO:0001026 denotes genome
T13204 1215-1246 SO:0000694 denotes single nucleotide polymorphisms
T13205 1248-1251 SO:0000694 denotes SNP
T13206 1369-1371 _FRAGMENT denotes 5'
T13207 1379-1383 SO:0000204 denotes UTRs
T13208 1376-1383 SO:0000205 denotes 3' UTRs
T13209 1395-1408 SO:0001816 denotes nonsynonomous
T13210 1409-1412 SO:0000694 denotes SNP
T13211 1453-1458 SO:0000704 denotes genes
T13212 1727-1737 SO:0000857 denotes homologous
T13213 1862-1867 SO:0000704 denotes genes
R3979 T13197 T13196 _lexicallyChainedTo untranslated region,5'
R3980 T13198 T13196 _lexicallyChainedTo UTR,5'
R3981 T13201 T13200 _lexicallyChainedTo UTR,3'
R3982 T13207 T13206 _lexicallyChainedTo UTRs,5'