> top > docs > PMC:1472690 > spans > 6758-7147 > annotations

PMC:1472690 / 6758-7147 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3519 0-12 JJ denotes Simultaneous
T3520 13-25 NN denotes co-treatment
T3521 26-28 IN denotes of
T3522 29-33 NN denotes PBMC
T3523 34-38 IN denotes with
T3524 39-41 NN denotes GP
T3525 42-45 VB denotes did
T3526 46-49 RB denotes not
T3527 50-56 VB denotes change
T3528 57-60 DT denotes the
T3529 61-72 JJ denotes LPS-induced
T3530 73-77 NN denotes NFκB
T3531 78-85 VB denotes binding
T3532 86-88 TO denotes to
T3533 89-95 NN denotes oligos
T3534 96-100 IN denotes from
T3535 101-104 DT denotes the
T3536 105-109 NN denotes TNFα
T3537 110-118 NN denotes promoter
T3538 119-132 RB denotes significantly
T3539 133-134 -LRB- denotes (
T3540 134-138 NNP denotes Fig.
T3541 139-141 NN denotes 1B
T3542 141-142 -RRB- denotes )
T3543 142-143 -COMMA- denotes ,
T3544 144-147 CC denotes but
T3545 148-161 RB denotes substantially
T3546 162-171 VB denotes decreased
T3547 172-175 DT denotes the
T3548 176-190 JJ denotes TSST-1-induced
T3549 191-195 NN denotes NFκB
T3550 196-203 NN denotes binding
T3551 204-208 WRB denotes when
T3552 209-217 VB denotes compared
T3553 218-220 TO denotes to
T3554 221-227 NN denotes TSST-1
T3555 228-230 CC denotes or
T3556 231-233 NN denotes GP
T3557 234-235 -LRB- denotes (
T3558 235-238 CD denotes 100
T3559 239-241 NN denotes μg
T3560 241-242 -RRB- denotes )
T3561 243-246 CC denotes and
T3562 247-251 RB denotes thus
T3563 252-260 VB denotes differed
T3564 261-271 RB denotes completely
T3565 272-276 IN denotes from
T3566 277-280 DT denotes the
T3567 281-292 JJ denotes theoretical
T3568 293-298 NN denotes value
T3569 299-301 IN denotes of
T3570 302-311 NN denotes GP/TSST-1
T3571 312-317 NN denotes calc.
T3572 318-319 -LRB- denotes (
T3573 319-320 NN denotes n
T3574 321-322 SYM denotes =
T3575 323-324 CD denotes 4
T3576 324-325 -COLON- denotes ;
T3577 326-327 NN denotes p
T3578 328-329 SYM denotes <
T3579 330-334 CD denotes 0.05
T3580 335-338 IN denotes vs.
T3581 339-348 NN denotes GP/TSST-1
T3582 349-354 NN denotes calc.
T3583 355-358 CC denotes and
T3584 359-360 NN denotes p
T3585 361-362 SYM denotes =
T3586 363-367 CD denotes 0.07
T3587 368-371 IN denotes vs.
T3588 372-378 NN denotes TSST-1
T3589 378-379 -COLON- denotes ;
T3590 380-384 FW denotes Fig.
T3591 385-387 NN denotes 1B
T3592 387-388 -RRB- denotes )
R2137 T3520 T3519 arg1Of co-treatment,Simultaneous
R2138 T3520 T3521 arg1Of co-treatment,of
R2139 T3520 T3523 arg1Of co-treatment,with
R2140 T3520 T3525 arg1Of co-treatment,did
R2141 T3520 T3527 arg1Of co-treatment,change
R2142 T3520 T3546 arg1Of co-treatment,decreased
R2143 T3520 T3552 arg1Of co-treatment,compared
R2144 T3520 T3563 arg1Of co-treatment,differed
R2145 T3522 T3521 arg2Of PBMC,of
R2146 T3524 T3523 arg2Of GP,with
R2147 T3527 T3525 arg2Of change,did
R2148 T3527 T3526 arg1Of change,not
R2149 T3527 T3544 arg1Of change,but
R2150 T3530 T3527 arg2Of NFκB,change
R2151 T3530 T3528 arg1Of NFκB,the
R2152 T3530 T3529 arg1Of NFκB,LPS-induced
R2153 T3530 T3531 arg1Of NFκB,binding
R2154 T3531 T3532 arg1Of binding,to
R2155 T3531 T3538 arg1Of binding,significantly
R2156 T3531 T3539 arg1Of binding,(
R2157 T3533 T3532 arg2Of oligos,to
R2158 T3533 T3534 arg1Of oligos,from
R2159 T3537 T3534 arg2Of promoter,from
R2160 T3537 T3535 arg1Of promoter,the
R2161 T3537 T3536 arg1Of promoter,TNFα
R2162 T3541 T3539 arg2Of 1B,(
R2163 T3541 T3540 arg1Of 1B,Fig.
R2164 T3542 T3539 arg3Of ),(
R2165 T3544 T3543 arg1Of but,","
R2166 T3546 T3551 arg1Of decreased,when
R2167 T3546 T3561 arg1Of decreased,and
R2168 T3550 T3546 arg2Of binding,decreased
R2169 T3550 T3547 arg1Of binding,the
R2170 T3550 T3548 arg1Of binding,TSST-1-induced
R2171 T3550 T3549 arg1Of binding,NFκB
R2172 T3552 T3551 arg2Of compared,when
R2173 T3552 T3553 arg1Of compared,to
R2174 T3554 T3555 arg1Of TSST-1,or
R2175 T3555 T3553 arg2Of or,to
R2176 T3555 T3557 arg1Of or,(
R2177 T3556 T3555 arg2Of GP,or
R2178 T3559 T3557 arg2Of μg,(
R2179 T3559 T3558 arg1Of μg,100
R2180 T3560 T3557 arg3Of ),(
R2181 T3561 T3544 arg2Of and,but
R2182 T3561 T3545 arg1Of and,substantially
R2183 T3563 T3561 arg2Of differed,and
R2184 T3563 T3562 arg1Of differed,thus
R2185 T3563 T3564 arg1Of differed,completely
R2186 T3563 T3565 arg1Of differed,from
R2187 T3568 T3565 arg2Of value,from
R2188 T3568 T3566 arg1Of value,the
R2189 T3568 T3567 arg1Of value,theoretical
R2190 T3568 T3569 arg1Of value,of
R2191 T3568 T3572 arg1Of value,(
R2192 T3571 T3569 arg2Of calc.,of
R2193 T3571 T3570 arg1Of calc.,GP/TSST-1
R2194 T3573 T3572 arg2Of n,(
R2195 T3573 T3574 arg1Of n,=
R2196 T3573 T3576 arg1Of n,;
R2197 T3573 T3589 arg1Of n,;
R2198 T3574 T3575 arg1Of =,4
R2199 T3577 T3578 arg1Of p,<
R2200 T3579 T3580 arg1Of 0.05,vs.
R2201 T3582 T3581 arg1Of calc.,GP/TSST-1
R2202 T3582 T3583 arg1Of calc.,and
R2203 T3583 T3580 arg2Of and,vs.
R2204 T3584 T3583 arg2Of p,and
R2205 T3584 T3585 arg1Of p,=
R2206 T3586 T3576 arg2Of 0.07,;
R2207 T3586 T3577 arg1Of 0.07,p
R2208 T3586 T3579 arg1Of 0.07,0.05
R2209 T3586 T3587 arg1Of 0.07,vs.
R2210 T3588 T3587 arg2Of TSST-1,vs.
R2211 T3591 T3589 arg2Of 1B,;
R2212 T3591 T3590 arg1Of 1B,Fig.
R2213 T3592 T3572 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3254 105-109 Protein denotes TNFα
T3255 176-182 Protein denotes TSST-1
T3256 221-227 Protein denotes TSST-1
T3257 305-311 Protein denotes TSST-1
T3258 342-348 Protein denotes TSST-1
T3259 372-378 Protein denotes TSST-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3645 105-109 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T3651 176-182 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T3652 221-227 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T3653 305-311 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T3654 342-348 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T3655 372-378 http://www.uniprot.org/uniprot/P06886 denotes TSST-1

GO-MF

Id Subject Object Predicate Lexical cue
T3269 78-85 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T3270 196-203 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T3162 0-389 Sentence denotes Simultaneous co-treatment of PBMC with GP did not change the LPS-induced NFκB binding to oligos from the TNFα promoter significantly (Fig. 1B), but substantially decreased the TSST-1-induced NFκB binding when compared to TSST-1 or GP (100 μg) and thus differed completely from the theoretical value of GP/TSST-1 calc. (n = 4; p < 0.05 vs. GP/TSST-1 calc. and p = 0.07 vs. TSST-1; Fig. 1B).
T47 0-389 Sentence denotes Simultaneous co-treatment of PBMC with GP did not change the LPS-induced NFκB binding to oligos from the TNFα promoter significantly (Fig. 1B), but substantially decreased the TSST-1-induced NFκB binding when compared to TSST-1 or GP (100 μg) and thus differed completely from the theoretical value of GP/TSST-1 calc. (n = 4; p < 0.05 vs. GP/TSST-1 calc. and p = 0.07 vs. TSST-1; Fig. 1B).

simple1

Id Subject Object Predicate Lexical cue
T3325 105-109 Protein denotes TNFα
T3326 176-182 Protein denotes TSST-1
T3327 221-227 Protein denotes TSST-1
T3328 305-311 Protein denotes TSST-1
T3329 342-348 Protein denotes TSST-1
T3330 372-378 Protein denotes TSST-1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4285 105-109 Protein denotes TNFα
T4286 176-182 Protein denotes TSST-1
T4287 221-227 Protein denotes TSST-1
T4288 305-311 Protein denotes TSST-1
T4289 342-348 Protein denotes TSST-1
T4290 372-378 Protein denotes TSST-1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3683 105-109 Protein denotes TNFα
T3684 176-182 Protein denotes TSST-1
T3685 221-227 Protein denotes TSST-1
T3686 305-311 Protein denotes TSST-1
T3687 342-348 Protein denotes TSST-1
T3688 372-378 Protein denotes TSST-1

DLUT931

Id Subject Object Predicate Lexical cue
T3778 105-109 Protein denotes TNFα
T3779 176-182 Protein denotes TSST-1
T3780 221-227 Protein denotes TSST-1
T3781 305-311 Protein denotes TSST-1
T3782 342-348 Protein denotes TSST-1
T3783 372-378 Protein denotes TSST-1
T3797 78-85 Binding denotes binding
R2333 T3778 T3797 themeOf TNFα,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4211 176-190 Protein denotes TSST-1-induced
T4219 134-137 Protein denotes Fig
T4221 221-227 Protein denotes TSST-1
T4223 305-311 Protein denotes TSST-1
T4225 39-41 Protein denotes GP
T4227 342-348 Protein denotes TSST-1
T4232 101-118 Entity denotes the TNFα promoter
T4233 61-72 Entity denotes LPS-induced
T4240 299-316 Protein denotes of GP/TSST-1 calc
T4245 339-353 Protein denotes GP/TSST-1 calc
T4252 26-41 Entity denotes of PBMC with GP
T4264 105-109 Protein denotes TNFα
T4266 372-387 Protein denotes TSST-1; Fig. 1B
R2713 T4232 T4264 partOf the TNFα promoter,TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4019 0-12 JJ denotes Simultaneous
T4020 13-25 NN denotes co-treatment
T4021 26-28 IN denotes of
T4022 29-33 NNP denotes PBMC
T4023 34-38 IN denotes with
T4024 39-41 NNP denotes GP
T4025 42-45 VBD denotes did
T4026 46-49 RB denotes not
T4027 50-56 VB denotes change
T4028 57-60 DT denotes the
T4029 61-72 JJ denotes LPS-induced
T4030 73-77 NN denotes NFκB
T4031 78-85 JJ denotes binding
T4032 86-88 TO denotes to
T4033 89-95 NNS denotes oligos
T4034 96-100 IN denotes from
T4035 101-104 DT denotes the
T4036 105-109 NNP denotes TNFα
T4037 110-118 NN denotes promoter
T4038 119-132 RB denotes significantly
T4039 133-134 -LRB- denotes (
T4040 134-138 NNP denotes Fig.
T4041 139-141 NNP denotes 1B
T4042 141-142 -RRB- denotes )
T4043 142-143 , denotes ,
T4044 144-147 CC denotes but
T4045 148-161 RB denotes substantially
T4046 162-171 VBD denotes decreased
T4047 172-175 DT denotes the
T4048 176-190 JJ denotes TSST-1-induced
T4049 191-195 NN denotes NFκB
T4050 196-203 JJ denotes binding
T4051 204-208 WRB denotes when
T4052 209-217 VBN denotes compared
T4053 218-220 TO denotes to
T4054 221-227 CD denotes TSST-1
T4055 228-230 CC denotes or
T4056 231-233 NNP denotes GP
T4057 234-235 -LRB- denotes (
T4058 235-238 CD denotes 100
T4059 239-241 NN denotes μg
T4060 241-242 -RRB- denotes )
T4061 243-246 CC denotes and
T4062 247-251 RB denotes thus
T4063 252-260 VBD denotes differed
T4064 261-271 RB denotes completely
T4065 272-276 IN denotes from
T4066 277-280 DT denotes the
T4067 281-292 JJ denotes theoretical
T4068 293-298 NN denotes value
T4069 299-301 IN denotes of
T4070 302-309 NNP denotes GP/TSST
T4071 309-311 CD denotes -1
T4072 312-316 NN denotes calc
T4073 316-317 . denotes .
T4074 318-319 -LRB- denotes (
T4075 319-320 FW denotes n
T4076 321-322 SYM denotes =
T4077 323-324 CD denotes 4
T4078 324-325 : denotes ;
T4079 326-327 VB denotes p
T4080 328-329 RB denotes <
T4081 330-334 CD denotes 0.05
T4082 335-338 FW denotes vs.
T4083 339-346 NNP denotes GP/TSST
T4084 346-348 CD denotes -1
T4085 349-353 NN denotes calc
T4086 353-354 . denotes .
T4087 355-358 CC denotes and
T4088 359-360 VB denotes p
T4089 361-362 SYM denotes =
T4090 363-367 CD denotes 0.07
T4091 368-371 FW denotes vs.
T4092 372-378 CD denotes TSST-1
T4093 378-379 : denotes ;
T4094 380-384 NNP denotes Fig.
T4095 385-387 NNP denotes 1B
T4096 387-388 -RRB- denotes )
T4097 388-389 . denotes .
R2533 T4019 T4020 amod Simultaneous,co-treatment
R2534 T4020 T4027 nsubj co-treatment,change
R2535 T4021 T4020 prep of,co-treatment
R2536 T4022 T4021 pobj PBMC,of
R2537 T4023 T4020 prep with,co-treatment
R2538 T4024 T4023 pobj GP,with
R2539 T4025 T4027 aux did,change
R2540 T4026 T4027 neg not,change
R2541 T4027 T4027 ROOT change,change
R2542 T4028 T4030 det the,NFκB
R2543 T4029 T4030 amod LPS-induced,NFκB
R2544 T4030 T4027 dobj NFκB,change
R2545 T4031 T4027 oprd binding,change
R2546 T4032 T4031 prep to,binding
R2547 T4033 T4032 pobj oligos,to
R2548 T4034 T4027 prep from,change
R2549 T4035 T4037 det the,promoter
R2550 T4036 T4037 compound TNFα,promoter
R2551 T4037 T4034 pobj promoter,from
R2552 T4038 T4027 advmod significantly,change
R2553 T4039 T4027 punct (,change
R2554 T4040 T4041 compound Fig.,1B
R2555 T4041 T4027 dobj 1B,change
R2556 T4042 T4027 punct ),change
R2557 T4043 T4027 punct ",",change
R2558 T4044 T4027 cc but,change
R2559 T4045 T4046 advmod substantially,decreased
R2560 T4046 T4050 amod decreased,binding
R2561 T4047 T4049 det the,NFκB
R2562 T4048 T4049 amod TSST-1-induced,NFκB
R2563 T4049 T4050 nsubj NFκB,binding
R2564 T4050 T4027 conj binding,change
R2565 T4051 T4052 advmod when,compared
R2566 T4052 T4063 advcl compared,differed
R2567 T4053 T4052 prep to,compared
R2568 T4054 T4053 pobj TSST-1,to
R2569 T4055 T4054 cc or,TSST-1
R2570 T4056 T4054 conj GP,TSST-1
R2571 T4057 T4059 punct (,μg
R2572 T4058 T4059 nummod 100,μg
R2573 T4059 T4056 appos μg,GP
R2574 T4060 T4059 punct ),μg
R2575 T4061 T4056 cc and,GP
R2576 T4062 T4063 advmod thus,differed
R2577 T4063 T4027 conj differed,change
R2578 T4064 T4063 advmod completely,differed
R2579 T4065 T4063 prep from,differed
R2580 T4066 T4068 det the,value
R2581 T4067 T4068 amod theoretical,value
R2582 T4068 T4065 pobj value,from
R2583 T4069 T4068 prep of,value
R2584 T4070 T4072 nmod GP/TSST,calc
R2585 T4071 T4072 nummod -1,calc
R2586 T4072 T4069 pobj calc,of
R2587 T4073 T4063 punct .,differed
R2588 T4074 T4077 punct (,4
R2589 T4075 T4077 advmod n,4
R2590 T4076 T4077 punct =,4
R2591 T4077 T4079 meta 4,p
R2592 T4078 T4079 punct ;,p
R2593 T4079 T4079 ROOT p,p
R2594 T4080 T4081 compound <,0.05
R2595 T4081 T4079 dobj 0.05,p
R2596 T4082 T4085 dep vs.,calc
R2597 T4083 T4085 nsubj GP/TSST,calc
R2598 T4084 T4085 nummod -1,calc
R2599 T4085 T4085 ROOT calc,calc
R2600 T4086 T4085 punct .,calc
R2601 T4087 T4088 cc and,p
R2602 T4088 T4088 ROOT p,p
R2603 T4089 T4090 punct =,0.07
R2604 T4090 T4088 nummod 0.07,p
R2605 T4091 T4088 prep vs.,p
R2606 T4092 T4091 pobj TSST-1,vs.
R2607 T4093 T4095 punct ;,1B
R2608 T4094 T4095 compound Fig.,1B
R2609 T4095 T4088 appos 1B,p
R2610 T4096 T4095 punct ),1B
R2611 T4097 T4088 punct .,p

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3742 73-77 Protein denotes NFκB
T3743 105-118 Protein denotes TNFα promoter
T3744 191-195 Protein denotes NFκB
T3745 78-85 Binding denotes binding
T3746 78-85 Binding denotes binding
T3747 196-203 Binding denotes binding
T3748 162-171 Negative_regulation denotes decreased
R2306 T3742 T3745 themeOf NFκB,binding
R2307 T3742 T3746 themeOf NFκB,binding
R2308 T3743 T3746 themeOf TNFα promoter,binding
R2309 T3744 T3747 themeOf NFκB,binding
R2310 T3747 T3748 themeOf binding,decreased

testone

Id Subject Object Predicate Lexical cue
T3054 105-109 Protein denotes TNFα
T3055 176-182 Protein denotes TSST-1
T3056 221-227 Protein denotes TSST-1
T3057 305-311 Protein denotes TSST-1
T3058 342-348 Protein denotes TSST-1
T3059 372-378 Protein denotes TSST-1
T3073 50-56 Regulation denotes change
T3074 65-72 Positive_regulation denotes induced
T3075 78-85 Binding denotes binding
T3076 162-171 Negative_regulation denotes decreased
T3077 183-190 Positive_regulation denotes induced
T3078 196-203 Binding denotes binding
R1852 T3055 T3077 causeOf TSST-1,induced
R1853 T3056 T3078 themeOf TSST-1,binding
R1861 T3074 T3073 themeOf induced,change
R1862 T3075 T3074 themeOf binding,induced
R1863 T3077 T3076 themeOf induced,decreased
R1864 T3078 T3077 themeOf binding,induced
R1865 T3078 T3076 themeOf binding,decreased

test3

Id Subject Object Predicate Lexical cue
T3102 105-109 Protein denotes TNFα
T3103 176-182 Protein denotes TSST-1
T3104 221-227 Protein denotes TSST-1
T3105 305-311 Protein denotes TSST-1
T3106 342-348 Protein denotes TSST-1
T3107 372-378 Protein denotes TSST-1
T3138 65-72 Positive_regulation denotes induced
T3139 78-85 Binding denotes binding
T3140 105-109 Protein denotes TNFα
T3141 162-171 Negative_regulation denotes decreased
T3142 176-182 Protein denotes TSST-1
T3143 183-190 Positive_regulation denotes induced
T3144 196-203 Binding denotes binding
T3145 221-227 Protein denotes TSST-1
T3146 305-311 Protein denotes TSST-1
T3147 342-348 Protein denotes TSST-1
T3148 372-378 Protein denotes TSST-1
R1880 T3139 T3138 themeOf binding,induced
R1881 T3142 T3143 causeOf TSST-1,induced
R1882 T3142 T3144 themeOf TSST-1,binding
R1883 T3143 T3141 themeOf induced,decreased
R1884 T3144 T3143 themeOf binding,induced
R1885 T3144 T3141 themeOf binding,decreased
R1886 T3145 T3144 themeOf TSST-1,binding