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PMC:1472690 / 6589-6757 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3487 0-11 RB denotes Accordingly
T3488 11-12 -COMMA- denotes ,
T3489 13-15 DT denotes an
T3490 16-26 NN denotes immunoblot
T3491 27-29 IN denotes of
T3492 30-37 JJ denotes nuclear
T3493 38-46 NN denotes extracts
T3494 47-51 IN denotes from
T3495 52-62 JJ denotes GP-treated
T3496 63-67 NN denotes PBMC
T3497 68-74 VB denotes showed
T3498 75-76 DT denotes a
T3499 77-83 JJ denotes strong
T3500 84-91 NN denotes binding
T3501 92-94 IN denotes of
T3502 95-99 NN denotes NFκB
T3503 100-103 NN denotes p65
T3504 104-107 CC denotes and
T3505 108-109 DT denotes a
T3506 110-116 JJ denotes weaker
T3507 117-125 NN denotes reaction
T3508 126-128 IN denotes of
T3509 129-132 NN denotes p50
T3510 132-133 -COMMA- denotes ,
T3511 134-141 IN denotes whereas
T3512 142-145 NN denotes p52
T3513 146-149 VB denotes was
T3514 150-158 JJ denotes negative
T3515 159-160 -LRB- denotes (
T3516 160-164 NN denotes Fig.
T3517 165-166 CD denotes 2
T3518 166-167 -RRB- denotes )
R2105 T3490 T3489 arg1Of immunoblot,an
R2106 T3490 T3491 arg1Of immunoblot,of
R2107 T3490 T3497 arg1Of immunoblot,showed
R2108 T3493 T3491 arg2Of extracts,of
R2109 T3493 T3492 arg1Of extracts,nuclear
R2110 T3493 T3494 arg1Of extracts,from
R2111 T3496 T3494 arg2Of PBMC,from
R2112 T3496 T3495 arg1Of PBMC,GP-treated
R2113 T3497 T3511 arg1Of showed,whereas
R2114 T3500 T3498 arg1Of binding,a
R2115 T3500 T3499 arg1Of binding,strong
R2116 T3500 T3501 arg1Of binding,of
R2117 T3500 T3504 arg1Of binding,and
R2118 T3503 T3501 arg2Of p65,of
R2119 T3503 T3502 arg1Of p65,NFκB
R2120 T3504 T3497 arg2Of and,showed
R2121 T3507 T3504 arg2Of reaction,and
R2122 T3507 T3505 arg1Of reaction,a
R2123 T3507 T3506 arg1Of reaction,weaker
R2124 T3507 T3508 arg1Of reaction,of
R2125 T3509 T3508 arg2Of p50,of
R2126 T3511 T3487 arg1Of whereas,Accordingly
R2127 T3511 T3488 arg1Of whereas,","
R2128 T3511 T3510 arg1Of whereas,","
R2129 T3512 T3513 arg1Of p52,was
R2130 T3512 T3514 arg1Of p52,negative
R2131 T3513 T3511 arg2Of was,whereas
R2132 T3514 T3513 arg2Of negative,was
R2133 T3514 T3515 arg1Of negative,(
R2134 T3516 T3515 arg2Of Fig.,(
R2135 T3516 T3517 arg1Of Fig.,2
R2136 T3518 T3515 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3251 100-103 Protein denotes p65
T3252 129-132 Protein denotes p50
T3253 142-145 Protein denotes p52

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3659 100-103 http://www.uniprot.org/uniprot/Q04206 denotes p65
T3661 100-103 http://www.uniprot.org/uniprot/P21579 denotes p65
T3663 129-132 http://www.uniprot.org/uniprot/P19838 denotes p50
T3664 142-145 http://www.uniprot.org/uniprot/Q00653 denotes p52

GO-MF

Id Subject Object Predicate Lexical cue
T3268 84-91 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T3161 0-168 Sentence denotes Accordingly, an immunoblot of nuclear extracts from GP-treated PBMC showed a strong binding of NFκB p65 and a weaker reaction of p50, whereas p52 was negative (Fig. 2).
T46 0-168 Sentence denotes Accordingly, an immunoblot of nuclear extracts from GP-treated PBMC showed a strong binding of NFκB p65 and a weaker reaction of p50, whereas p52 was negative (Fig. 2).

simple1

Id Subject Object Predicate Lexical cue
T3322 100-103 Protein denotes p65
T3323 129-132 Protein denotes p50
T3324 142-145 Protein denotes p52

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4282 100-103 Protein denotes p65
T4283 129-132 Protein denotes p50
T4284 142-145 Protein denotes p52
T4300 150-158 Gene_expression denotes negative
T4301 84-91 Binding denotes binding
R2707 T4282 T4301 themeOf p65,binding
R2708 T4284 T4300 themeOf p52,negative

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3680 100-103 Protein denotes p65
T3681 129-132 Protein denotes p50
T3682 142-145 Protein denotes p52
T3699 150-158 Negative_regulation denotes negative
T3700 84-91 Binding denotes binding
R2276 T3680 T3700 themeOf p65,binding
R2277 T3682 T3699 themeOf p52,negative

DLUT931

Id Subject Object Predicate Lexical cue
T3775 100-103 Protein denotes p65
T3776 129-132 Protein denotes p50
T3777 142-145 Protein denotes p52
T3795 84-91 Binding denotes binding
T3796 150-158 Negative_regulation denotes negative
R2330 T3775 T3795 themeOf p65,binding
R2331 T3776 T3795 themeOf p50,binding
R2332 T3777 T3796 themeOf p52,negative

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4207 95-103 Protein denotes NFκB p65
T4215 95-99 Protein denotes NFκB
T4217 126-132 Protein denotes of p50
T4235 52-67 Entity denotes GP-treated PBMC
T4241 30-67 Entity denotes nuclear extracts from GP-treated PBMC
T4251 142-145 Protein denotes p52

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3986 0-11 RB denotes Accordingly
T3987 11-12 , denotes ,
T3988 13-15 DT denotes an
T3989 16-26 NN denotes immunoblot
T3990 27-29 IN denotes of
T3991 30-37 JJ denotes nuclear
T3992 38-46 NNS denotes extracts
T3993 47-51 IN denotes from
T3994 52-62 JJ denotes GP-treated
T3995 63-67 NNP denotes PBMC
T3996 68-74 VBD denotes showed
T3997 75-76 DT denotes a
T3998 77-83 JJ denotes strong
T3999 84-91 JJ denotes binding
T4000 92-94 IN denotes of
T4001 95-99 NNP denotes NFκB
T4002 100-103 CD denotes p65
T4003 104-107 CC denotes and
T4004 108-109 DT denotes a
T4005 110-116 JJR denotes weaker
T4006 117-125 NN denotes reaction
T4007 126-128 IN denotes of
T4008 129-132 CD denotes p50
T4009 132-133 , denotes ,
T4010 134-141 IN denotes whereas
T4011 142-145 CD denotes p52
T4012 146-149 VBD denotes was
T4013 150-158 JJ denotes negative
T4014 159-160 -LRB- denotes (
T4015 160-164 JJ denotes Fig.
T4016 165-166 CD denotes 2
T4017 166-167 -RRB- denotes )
T4018 167-168 . denotes .
R2500 T3986 T3996 advmod Accordingly,showed
R2501 T3987 T3996 punct ",",showed
R2502 T3988 T3989 det an,immunoblot
R2503 T3989 T3996 nsubj immunoblot,showed
R2504 T3990 T3989 prep of,immunoblot
R2505 T3991 T3992 amod nuclear,extracts
R2506 T3992 T3990 pobj extracts,of
R2507 T3993 T3992 prep from,extracts
R2508 T3994 T3995 compound GP-treated,PBMC
R2509 T3995 T3993 pobj PBMC,from
R2510 T3996 T3996 ROOT showed,showed
R2511 T3997 T3999 det a,binding
R2512 T3998 T3999 amod strong,binding
R2513 T3999 T3996 dobj binding,showed
R2514 T4000 T3999 prep of,binding
R2515 T4001 T4000 pobj NFκB,of
R2516 T4002 T4001 nummod p65,NFκB
R2517 T4003 T3999 cc and,binding
R2518 T4004 T4006 det a,reaction
R2519 T4005 T4006 amod weaker,reaction
R2520 T4006 T3999 conj reaction,binding
R2521 T4007 T4006 prep of,reaction
R2522 T4008 T4007 pobj p50,of
R2523 T4009 T3996 punct ",",showed
R2524 T4010 T4012 mark whereas,was
R2525 T4011 T4012 nsubj p52,was
R2526 T4012 T3996 advcl was,showed
R2527 T4013 T4012 acomp negative,was
R2528 T4014 T4017 punct (,)
R2529 T4015 T4017 nmod Fig.,)
R2530 T4016 T4015 nummod 2,Fig.
R2531 T4017 T3996 punct ),showed
R2532 T4018 T3996 punct .,showed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3736 95-103 Protein denotes NFκB p65
T3737 129-132 Protein denotes p50
T3738 142-145 Protein denotes p52
T3739 84-91 Binding denotes binding
T3740 84-91 Binding denotes binding
T3741 150-158 Gene_expression denotes negative
R2302 T3736 T3739 themeOf NFκB p65,binding
R2303 T3736 T3740 themeOf NFκB p65,binding
R2304 T3737 T3740 themeOf p50,binding
R2305 T3738 T3741 themeOf p52,negative

testone

Id Subject Object Predicate Lexical cue
T3051 100-103 Protein denotes p65
T3052 129-132 Protein denotes p50
T3053 142-145 Protein denotes p52
T3072 84-91 Binding denotes binding
R1851 T3051 T3072 themeOf p65,binding

test3

Id Subject Object Predicate Lexical cue
T3099 100-103 Protein denotes p65
T3100 129-132 Protein denotes p50
T3101 142-145 Protein denotes p52
T3134 84-91 Binding denotes binding
T3135 100-103 Protein denotes p65
T3136 129-132 Protein denotes p50
T3137 142-145 Protein denotes p52
R1879 T3135 T3134 themeOf p65,binding