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PMC:1472690 / 6033-6296 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3378 0-2 NN denotes GP
T3379 3-10 VB denotes induced
T3380 11-15 NN denotes band
T3381 16-22 NN denotes shifts
T3382 22-23 -COMMA- denotes ,
T3383 24-34 VB denotes indicating
T3384 35-42 NN denotes binding
T3385 43-45 IN denotes of
T3386 46-50 NN denotes NFκB
T3387 51-53 RB denotes as
T3388 54-58 RB denotes well
T3389 59-61 IN denotes as
T3390 62-64 IN denotes of
T3391 65-71 NN denotes NFIL-6
T3392 72-74 TO denotes to
T3393 75-78 DT denotes the
T3394 79-92 VB denotes corresponding
T3395 93-96 NN denotes DNA
T3396 97-113 NN denotes oligonucleotides
T3397 114-115 -LRB- denotes (
T3398 115-116 NN denotes κ
T3399 117-126 NN denotes consensus
T3400 126-127 -COMMA- denotes ,
T3401 128-130 NN denotes κ1
T3402 130-131 -COMMA- denotes ,
T3403 132-134 NN denotes κ2
T3404 134-135 -COMMA- denotes ,
T3405 136-138 CD denotes κ3
T3406 139-144 NN denotes sites
T3407 145-149 IN denotes from
T3408 150-153 DT denotes the
T3409 154-158 NN denotes TNFα
T3410 159-167 NN denotes promoter
T3411 167-168 -COLON- denotes ;
T3412 169-170 LS denotes κ
T3413 171-180 NN denotes consensus
T3414 181-185 IN denotes from
T3415 186-189 DT denotes the
T3416 190-194 NN denotes IL-8
T3417 195-203 NN denotes promoter
T3418 203-204 -COLON- denotes ;
T3419 205-220 NN denotes NFIL-6consensus
T3420 221-225 IN denotes from
T3421 226-229 DT denotes the
T3422 230-234 NN denotes IL-6
T3423 235-243 NN denotes promoter
T3424 243-244 -COLON- denotes ;
T3425 245-250 NNP denotes Table
T3426 251-252 CD denotes 1
T3427 252-253 -COLON- denotes ;
T3428 254-258 NNP denotes Fig.
T3429 259-261 NN denotes 1A
T3430 261-262 -RRB- denotes )
R1995 T3378 T3379 arg1Of GP,induced
R1996 T3379 T3382 arg1Of induced,","
R1997 T3379 T3383 modOf induced,indicating
R1998 T3381 T3379 arg2Of shifts,induced
R1999 T3381 T3380 arg1Of shifts,band
R2000 T3384 T3383 arg2Of binding,indicating
R2001 T3384 T3385 arg1Of binding,of
R2002 T3384 T3390 arg1Of binding,of
R2003 T3385 T3389 arg1Of of,as
R2004 T3386 T3385 arg2Of NFκB,of
R2005 T3389 T3387 arg1Of as,as
R2006 T3389 T3388 arg1Of as,well
R2007 T3390 T3389 arg2Of of,as
R2008 T3391 T3390 arg2Of NFIL-6,of
R2009 T3391 T3392 arg1Of NFIL-6,to
R2010 T3396 T3392 arg2Of oligonucleotides,to
R2011 T3396 T3393 arg1Of oligonucleotides,the
R2012 T3396 T3394 arg1Of oligonucleotides,corresponding
R2013 T3396 T3395 arg1Of oligonucleotides,DNA
R2014 T3396 T3397 arg1Of oligonucleotides,(
R2015 T3399 T3398 arg1Of consensus,κ
R2016 T3399 T3400 arg1Of consensus,","
R2017 T3399 T3402 arg1Of consensus,","
R2018 T3399 T3404 arg1Of consensus,","
R2019 T3401 T3400 arg2Of κ1,","
R2020 T3403 T3402 arg2Of κ2,","
R2021 T3404 T3397 arg2Of ",",(
R2022 T3406 T3404 arg2Of sites,","
R2023 T3406 T3405 arg1Of sites,κ3
R2024 T3406 T3407 arg1Of sites,from
R2025 T3406 T3411 arg1Of sites,;
R2026 T3406 T3418 arg1Of sites,;
R2027 T3406 T3424 arg1Of sites,;
R2028 T3410 T3407 arg2Of promoter,from
R2029 T3410 T3408 arg1Of promoter,the
R2030 T3410 T3409 arg1Of promoter,TNFα
R2031 T3413 T3411 arg2Of consensus,;
R2032 T3413 T3412 arg1Of consensus,κ
R2033 T3413 T3414 arg1Of consensus,from
R2034 T3417 T3414 arg2Of promoter,from
R2035 T3417 T3415 arg1Of promoter,the
R2036 T3417 T3416 arg1Of promoter,IL-8
R2037 T3419 T3418 arg2Of NFIL-6consensus,;
R2038 T3419 T3420 arg1Of NFIL-6consensus,from
R2039 T3423 T3420 arg2Of promoter,from
R2040 T3423 T3421 arg1Of promoter,the
R2041 T3423 T3422 arg1Of promoter,IL-6
R2042 T3425 T3426 arg1Of Table,1
R2043 T3425 T3427 arg1Of Table,;
R2044 T3427 T3424 arg2Of ;,;
R2045 T3429 T3427 arg2Of 1A,;
R2046 T3429 T3428 arg1Of 1A,Fig.
R2047 T3430 T3397 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3243 65-71 Protein denotes NFIL-6
T3244 154-158 Protein denotes TNFα
T3245 190-194 Protein denotes IL-8
T3246 230-234 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3644 154-158 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T3647 230-234 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T3656 190-194 http://www.uniprot.org/uniprot/P10145 denotes IL-8

GO-MF

Id Subject Object Predicate Lexical cue
T3266 35-42 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T3274 230-234 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T3275 190-194 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8

sentences

Id Subject Object Predicate Lexical cue
T3158 0-263 Sentence denotes GP induced band shifts, indicating binding of NFκB as well as of NFIL-6 to the corresponding DNA oligonucleotides (κ consensus, κ1, κ2, κ3 sites from the TNFα promoter; κ consensus from the IL-8 promoter; NFIL-6consensus from the IL-6 promoter; Table 1; Fig. 1A).
T43 0-263 Sentence denotes GP induced band shifts, indicating binding of NFκB as well as of NFIL-6 to the corresponding DNA oligonucleotides (κ consensus, κ1, κ2, κ3 sites from the TNFα promoter; κ consensus from the IL-8 promoter; NFIL-6consensus from the IL-6 promoter; Table 1; Fig. 1A).

simple1

Id Subject Object Predicate Lexical cue
T3314 65-71 Protein denotes NFIL-6
T3315 154-158 Protein denotes TNFα
T3316 190-194 Protein denotes IL-8
T3317 230-234 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4274 190-194 Protein denotes IL-8
T4275 230-234 Protein denotes IL-6
T4276 65-71 Protein denotes NFIL-6
T4277 154-158 Protein denotes TNFα
T4298 35-42 Binding denotes binding
R2704 T4276 T4298 themeOf NFIL-6,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3672 190-194 Protein denotes IL-8
T3673 230-234 Protein denotes IL-6
T3674 65-71 Protein denotes NFIL-6
T3675 154-158 Protein denotes TNFα
T3696 35-42 Binding denotes binding
R2268 T3672 T3696 themeOf IL-8,binding
R2269 T3673 T3696 themeOf IL-6,binding
R2270 T3674 T3696 themeOf NFIL-6,binding
R2271 T3674 T3696 themeOf NFIL-6,binding
R2272 T3674 T3696 themeOf NFIL-6,binding
R2273 T3675 T3696 themeOf TNFα,binding

DLUT931

Id Subject Object Predicate Lexical cue
T3767 190-194 Protein denotes IL-8
T3768 230-234 Protein denotes IL-6
T3769 65-71 Protein denotes NFIL-6
T3770 154-158 Protein denotes TNFα
T3791 35-42 Binding denotes binding
T3792 3-10 Positive_regulation denotes induced
R2324 T3767 T3791 themeOf IL-8,binding
R2325 T3768 T3791 themeOf IL-6,binding
R2326 T3769 T3791 themeOf NFIL-6,binding
R2327 T3769 T3791 themeOf NFIL-6,binding
R2340 T3791 T3792 themeOf binding,induced
R2341 T3791 T3792 themeOf binding,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4210 65-127 Protein denotes NFIL-6 to the corresponding DNA oligonucleotides (κ consensus,
T4214 190-194 Protein denotes IL-8
T4216 75-127 Entity denotes the corresponding DNA oligonucleotides (κ consensus,
T4220 154-158 Protein denotes TNFα
T4228 205-209 Protein denotes NFIL
T4231 186-243 Entity denotes the IL-8 promoter; NFIL-6consensus from the IL-6 promoter
T4238 150-167 Entity denotes the TNFα promoter
T4246 230-234 Protein denotes IL-6
T4248 43-50 Protein denotes of NFκB
T4254 93-96 Entity denotes DNA
T4255 136-167 Entity denotes κ3 sites from the TNFα promoter
T4265 226-243 Entity denotes the IL-6 promoter
R2698 T4265 T4246 partOf the IL-6 promoter,IL-6
R2714 T4238 T4220 partOf the TNFα promoter,TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3874 0-2 NNP denotes GP
T3875 3-10 VBD denotes induced
T3876 11-15 NN denotes band
T3877 16-22 NNS denotes shifts
T3878 22-23 , denotes ,
T3879 24-34 VBG denotes indicating
T3880 35-42 JJ denotes binding
T3881 43-45 IN denotes of
T3882 46-50 NNP denotes NFκB
T3883 51-53 RB denotes as
T3884 54-58 RB denotes well
T3885 59-61 IN denotes as
T3886 62-64 IN denotes of
T3887 65-71 NN denotes NFIL-6
T3888 72-74 TO denotes to
T3889 75-78 DT denotes the
T3890 79-92 JJ denotes corresponding
T3891 93-96 NNP denotes DNA
T3892 97-113 NNS denotes oligonucleotides
T3893 114-115 -LRB- denotes (
T3894 115-116 FW denotes κ
T3895 117-126 NN denotes consensus
T3896 126-127 , denotes ,
T3897 128-130 CD denotes κ1
T3898 130-131 , denotes ,
T3899 132-134 CD denotes κ2
T3900 134-135 , denotes ,
T3901 136-138 CD denotes κ3
T3902 139-144 NNS denotes sites
T3903 145-149 IN denotes from
T3904 150-153 DT denotes the
T3905 154-158 NNP denotes TNFα
T3906 159-167 NN denotes promoter
T3907 167-168 : denotes ;
T3908 169-170 VB denotes κ
T3909 171-180 NN denotes consensus
T3910 181-185 IN denotes from
T3911 186-189 DT denotes the
T3912 190-194 NN denotes IL-8
T3913 195-203 NN denotes promoter
T3914 203-204 : denotes ;
T3915 205-220 NN denotes NFIL-6consensus
T3916 221-225 IN denotes from
T3917 226-229 DT denotes the
T3918 230-234 NNP denotes IL-6
T3919 235-243 NN denotes promoter
T3920 243-244 : denotes ;
T3921 245-250 NNP denotes Table
T3922 251-252 CD denotes 1
T3923 252-253 : denotes ;
T3924 254-258 NNP denotes Fig.
T3925 259-261 NNP denotes 1A
T3926 261-262 -RRB- denotes )
T3927 262-263 . denotes .
R2389 T3875 T3925 ccomp induced,1A
R2390 T3876 T3877 compound band,shifts
R2391 T3877 T3875 dobj shifts,induced
R2392 T3878 T3875 punct ",",induced
R2393 T3879 T3875 advcl indicating,induced
R2394 T3880 T3879 dobj binding,indicating
R2395 T3881 T3880 prep of,binding
R2396 T3882 T3881 pobj NFκB,of
R2397 T3883 T3885 advmod as,as
R2398 T3884 T3885 advmod well,as
R2399 T3885 T3879 cc as,indicating
R2400 T3886 T3885 prep of,as
R2401 T3887 T3886 pobj NFIL-6,of
R2402 T3888 T3887 prep to,NFIL-6
R2403 T3889 T3892 det the,oligonucleotides
R2404 T3890 T3892 amod corresponding,oligonucleotides
R2405 T3891 T3892 compound DNA,oligonucleotides
R2406 T3892 T3888 pobj oligonucleotides,to
R2407 T3893 T3895 punct (,consensus
R2408 T3894 T3895 nmod κ,consensus
R2409 T3895 T3892 appos consensus,oligonucleotides
R2410 T3896 T3895 punct ",",consensus
R2411 T3897 T3895 appos κ1,consensus
R2412 T3898 T3897 punct ",",κ1
R2413 T3899 T3897 conj κ2,κ1
R2414 T3900 T3895 punct ",",consensus
R2415 T3901 T3902 nummod κ3,sites
R2416 T3902 T3895 appos sites,consensus
R2417 T3903 T3902 prep from,sites
R2418 T3904 T3906 det the,promoter
R2419 T3905 T3906 compound TNFα,promoter
R2420 T3906 T3903 pobj promoter,from
R2421 T3907 T3895 punct ;,consensus
R2422 T3908 T3909 compound κ,consensus
R2423 T3909 T3875 dobj consensus,induced
R2424 T3910 T3909 prep from,consensus
R2425 T3911 T3913 det the,promoter
R2426 T3912 T3913 compound IL-8,promoter
R2427 T3913 T3910 pobj promoter,from
R2428 T3914 T3925 punct ;,1A
R2429 T3915 T3925 ccomp NFIL-6consensus,1A
R2430 T3916 T3915 prep from,NFIL-6consensus
R2431 T3917 T3919 det the,promoter
R2432 T3918 T3919 compound IL-6,promoter
R2433 T3919 T3916 pobj promoter,from
R2434 T3920 T3915 punct ;,NFIL-6consensus
R2435 T3921 T3925 npadvmod Table,1A
R2436 T3922 T3921 nummod 1,Table
R2437 T3923 T3925 punct ;,1A
R2438 T3924 T3925 compound Fig.,1A
R2439 T3925 T3925 ROOT 1A,1A
R2440 T3926 T3925 punct ),1A
R2441 T3927 T3925 punct .,1A

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3711 46-50 Protein denotes NFκB
T3712 65-71 Protein denotes NFIL-6
T3713 128-144 Protein denotes κ1, κ2, κ3 sites
T3714 154-167 Protein denotes TNFα promoter
T3715 190-203 Protein denotes IL-8 promoter
T3716 205-220 Protein denotes NFIL-6consensus
T3717 230-252 Protein denotes IL-6 promoter; Table 1
T3718 254-261 Protein denotes Fig. 1A
T3719 35-42 Binding denotes binding
T3720 35-42 Binding denotes binding
T3721 35-42 Binding denotes binding
T3722 35-42 Binding denotes binding
R2284 T3711 T3719 themeOf NFκB,binding
R2285 T3711 T3720 themeOf NFκB,binding
R2286 T3712 T3721 themeOf NFIL-6,binding
R2287 T3712 T3722 themeOf NFIL-6,binding
R2288 T3716 T3719 themeOf NFIL-6consensus,binding
R2289 T3716 T3721 themeOf NFIL-6consensus,binding
R2290 T3718 T3720 themeOf Fig. 1A,binding
R2291 T3718 T3722 themeOf Fig. 1A,binding

testone

Id Subject Object Predicate Lexical cue
T3043 65-71 Protein denotes NFIL-6
T3044 154-158 Protein denotes TNFα
T3045 190-194 Protein denotes IL-8
T3046 230-234 Protein denotes IL-6
T3068 35-42 Binding denotes binding
R1847 T3043 T3068 themeOf NFIL-6,binding

test3

Id Subject Object Predicate Lexical cue
T3091 65-71 Protein denotes NFIL-6
T3092 154-158 Protein denotes TNFα
T3093 190-194 Protein denotes IL-8
T3094 230-234 Protein denotes IL-6
T3122 35-42 Binding denotes binding
T3123 65-71 Protein denotes NFIL-6
T3124 154-158 Protein denotes TNFα
T3125 190-194 Protein denotes IL-8
T3126 230-234 Protein denotes IL-6
R1874 T3123 T3122 themeOf NFIL-6,binding