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PMC:1472690 / 5150-5404 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1771 0-15 RB denotes Correspondingly
T1772 15-16 -COMMA- denotes ,
T1773 17-21 CD denotes four
T1774 22-26 NN denotes NFκB
T1775 27-32 NN denotes sites
T1776 33-37 IN denotes from
T1777 38-41 DT denotes the
T1778 42-46 NN denotes TNFα
T1779 47-55 NN denotes promoter
T1780 56-57 -LRB- denotes (
T1781 57-58 NN denotes κ
T1782 59-68 NN denotes consensus
T1783 68-69 -COMMA- denotes ,
T1784 70-72 NN denotes κ1
T1785 72-73 -COMMA- denotes ,
T1786 74-76 NN denotes κ2
T1787 76-77 -COMMA- denotes ,
T1788 78-80 CD denotes κ3
T1789 80-81 -RRB- denotes )
T1790 82-83 -LRB- denotes [
T1791 83-85 CD denotes 27
T1792 85-86 -RRB- denotes ]
T1793 86-87 -COMMA- denotes ,
T1794 88-89 DT denotes a
T1795 90-91 JJ denotes κ
T1796 92-101 NN denotes consensus
T1797 102-106 NN denotes site
T1798 107-111 IN denotes from
T1799 112-115 DT denotes the
T1800 116-120 NN denotes IL-8
T1801 121-129 NN denotes promoter
T1802 130-131 -LRB- denotes [
T1803 131-133 CD denotes 28
T1804 133-134 -RRB- denotes ]
T1805 134-135 -COMMA- denotes ,
T1806 136-138 DT denotes an
T1807 139-143 NN denotes NFAT
T1808 144-148 NN denotes site
T1809 149-153 IN denotes from
T1810 154-157 DT denotes the
T1811 158-162 NN denotes IFNγ
T1812 163-171 NN denotes promoter
T1813 172-173 -LRB- denotes (
T1814 173-177 NN denotes ATP2
T1815 177-178 -RRB- denotes )
T1816 179-180 -LRB- denotes [
T1817 180-182 CD denotes 29
T1818 182-183 -RRB- denotes ]
T1819 184-187 CC denotes and
T1820 188-189 DT denotes a
T1821 190-199 NN denotes consensus
T1822 200-206 NN denotes NFIL-6
T1823 207-211 NN denotes site
T1824 212-216 IN denotes from
T1825 217-220 DT denotes the
T1826 221-225 NN denotes IL-6
T1827 226-234 NN denotes promoter
T1828 235-236 -LRB- denotes [
T1829 236-238 CD denotes 13
T1830 238-239 -RRB- denotes ]
T1831 240-244 VB denotes were
T1832 245-253 VB denotes examined
R912 T1775 T1773 arg1Of sites,four
R913 T1775 T1774 arg1Of sites,NFκB
R914 T1775 T1776 arg1Of sites,from
R915 T1775 T1780 arg1Of sites,(
R916 T1775 T1790 arg1Of sites,[
R917 T1775 T1793 arg1Of sites,","
R918 T1775 T1805 arg1Of sites,","
R919 T1775 T1819 arg1Of sites,and
R920 T1779 T1776 arg2Of promoter,from
R921 T1779 T1777 arg1Of promoter,the
R922 T1779 T1778 arg1Of promoter,TNFα
R923 T1782 T1780 arg2Of consensus,(
R924 T1782 T1781 arg1Of consensus,κ
R925 T1782 T1783 arg1Of consensus,","
R926 T1782 T1785 arg1Of consensus,","
R927 T1782 T1787 arg1Of consensus,","
R928 T1784 T1783 arg2Of κ1,","
R929 T1786 T1785 arg2Of κ2,","
R930 T1788 T1787 arg2Of κ3,","
R931 T1789 T1780 arg3Of ),(
R932 T1791 T1790 arg2Of 27,[
R933 T1792 T1790 arg3Of ],[
R934 T1797 T1793 arg2Of site,","
R935 T1797 T1794 arg1Of site,a
R936 T1797 T1795 arg1Of site,κ
R937 T1797 T1796 arg1Of site,consensus
R938 T1797 T1798 arg1Of site,from
R939 T1801 T1798 arg2Of promoter,from
R940 T1801 T1799 arg1Of promoter,the
R941 T1801 T1800 arg1Of promoter,IL-8
R942 T1801 T1802 arg1Of promoter,[
R943 T1803 T1802 arg2Of 28,[
R944 T1804 T1802 arg3Of ],[
R945 T1808 T1805 arg2Of site,","
R946 T1808 T1806 arg1Of site,an
R947 T1808 T1807 arg1Of site,NFAT
R948 T1808 T1809 arg1Of site,from
R949 T1812 T1809 arg2Of promoter,from
R950 T1812 T1810 arg1Of promoter,the
R951 T1812 T1811 arg1Of promoter,IFNγ
R952 T1812 T1813 arg1Of promoter,(
R953 T1812 T1816 arg1Of promoter,[
R954 T1814 T1813 arg2Of ATP2,(
R955 T1815 T1813 arg3Of ),(
R956 T1817 T1816 arg2Of 29,[
R957 T1818 T1816 arg3Of ],[
R958 T1819 T1831 arg1Of and,were
R959 T1819 T1832 arg2Of and,examined
R960 T1823 T1819 arg2Of site,and
R961 T1823 T1820 arg1Of site,a
R962 T1823 T1821 arg1Of site,consensus
R963 T1823 T1822 arg1Of site,NFIL-6
R964 T1823 T1824 arg1Of site,from
R965 T1827 T1824 arg2Of promoter,from
R966 T1827 T1825 arg1Of promoter,the
R967 T1827 T1826 arg1Of promoter,IL-6
R968 T1827 T1828 arg1Of promoter,[
R969 T1829 T1828 arg2Of 13,[
R970 T1830 T1828 arg3Of ],[
R971 T1832 T1771 arg1Of examined,Correspondingly
R972 T1832 T1772 arg1Of examined,","
R973 T1832 T1831 arg2Of examined,were

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1179 42-46 Protein denotes TNFα
T1180 116-120 Protein denotes IL-8
T1181 158-162 Protein denotes IFNγ
T1182 221-225 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1923 116-120 http://www.uniprot.org/uniprot/P10145 denotes IL-8
T1910 42-46 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T1914 221-225 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-MF

Id Subject Object Predicate Lexical cue
T1205 221-225 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T1208 116-120 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8

sentences

Id Subject Object Predicate Lexical cue
T1088 0-254 Sentence denotes Correspondingly, four NFκB sites from the TNFα promoter (κ consensus, κ1, κ2, κ3) [27], a κ consensus site from the IL-8 promoter [28], an NFAT site from the IFNγ promoter (ATP2) [29] and a consensus NFIL-6 site from the IL-6 promoter [13] were examined.
T37 0-254 Sentence denotes Correspondingly, four NFκB sites from the TNFα promoter (κ consensus, κ1, κ2, κ3) [27], a κ consensus site from the IL-8 promoter [28], an NFAT site from the IFNγ promoter (ATP2) [29] and a consensus NFIL-6 site from the IL-6 promoter [13] were examined.

simple1

Id Subject Object Predicate Lexical cue
T1281 42-46 Protein denotes TNFα
T1282 116-120 Protein denotes IL-8
T1283 158-162 Protein denotes IFNγ
T1284 221-225 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2958 42-46 Protein denotes TNFα
T2959 116-120 Protein denotes IL-8
T2960 158-162 Protein denotes IFNγ
T2961 221-225 Protein denotes IL-6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1956 42-46 Protein denotes TNFα
T1957 116-120 Protein denotes IL-8
T1958 158-162 Protein denotes IFNγ
T1959 221-225 Protein denotes IL-6

DLUT931

Id Subject Object Predicate Lexical cue
T2054 42-46 Protein denotes TNFα
T2055 116-120 Protein denotes IL-8
T2056 158-162 Protein denotes IFNγ
T2057 221-225 Protein denotes IL-6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2889 158-162 Protein denotes IFNγ
T2890 22-26 Protein denotes NFκB
T2891 112-134 Entity denotes the IL-8 promoter [28]
T2904 200-206 Protein denotes NFIL-6
T2906 88-106 Entity denotes a κ consensus site
T2909 17-69 Entity denotes four NFκB sites from the TNFα promoter (κ consensus,
T2916 136-183 Entity denotes an NFAT site from the IFNγ promoter (ATP2) [29]
T2921 217-239 Entity denotes the IL-6 promoter [13]
T2840 188-211 Entity denotes a consensus NFIL-6 site
T2842 38-69 Entity denotes the TNFα promoter (κ consensus,
T2844 116-120 Protein denotes IL-8
T2845 154-178 Entity denotes the IFNγ promoter (ATP2)
T2854 42-46 Protein denotes TNFα
T2874 221-225 Protein denotes IL-6
R1841 T2921 T2874 partOf the IL-6 promoter [13],IL-6
R1798 T2842 T2854 partOf "the TNFα promoter (κ consensus,",TNFα
R1802 T2845 T2889 partOf the IFNγ promoter (ATP2),IFNγ
R1829 T2891 T2844 partOf the IL-8 promoter [28],IL-8

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2638 0-15 RB denotes Correspondingly
T2639 15-16 , denotes ,
T2640 17-21 CD denotes four
T2641 22-26 NNP denotes NFκB
T2642 27-32 NNS denotes sites
T2643 33-37 IN denotes from
T2644 38-41 DT denotes the
T2645 42-46 NNP denotes TNFα
T2646 47-55 NN denotes promoter
T2647 56-57 -LRB- denotes (
T2648 57-58 FW denotes κ
T2649 59-68 NN denotes consensus
T2650 68-69 , denotes ,
T2651 70-72 CD denotes κ1
T2652 72-73 , denotes ,
T2653 74-76 CD denotes κ2
T2654 76-77 , denotes ,
T2655 78-80 CD denotes κ3
T2656 80-81 -RRB- denotes )
T2657 82-83 NNP denotes [
T2658 83-85 CD denotes 27
T2659 85-86 NNP denotes ]
T2660 86-87 , denotes ,
T2661 88-89 DT denotes a
T2662 90-91 NN denotes κ
T2663 92-101 NN denotes consensus
T2664 102-106 NN denotes site
T2665 107-111 IN denotes from
T2666 112-115 DT denotes the
T2667 116-120 NN denotes IL-8
T2668 121-129 NN denotes promoter
T2669 130-131 NNP denotes [
T2670 131-133 CD denotes 28
T2671 133-134 NNP denotes ]
T2672 134-135 , denotes ,
T2673 136-138 DT denotes an
T2674 139-143 NNP denotes NFAT
T2675 144-148 NN denotes site
T2676 149-153 IN denotes from
T2677 154-157 DT denotes the
T2678 158-162 NNP denotes IFNγ
T2679 163-171 NN denotes promoter
T2680 172-173 -LRB- denotes (
T2681 173-177 NNP denotes ATP2
T2682 177-178 -RRB- denotes )
T2683 179-180 NNP denotes [
T2684 180-182 CD denotes 29
T2685 182-183 NNP denotes ]
T2686 184-187 CC denotes and
T2687 188-189 DT denotes a
T2688 190-199 NN denotes consensus
T2689 200-206 NNP denotes NFIL-6
T2690 207-211 NN denotes site
T2691 212-216 IN denotes from
T2692 217-220 DT denotes the
T2693 221-225 NNP denotes IL-6
T2694 226-234 NN denotes promoter
T2695 235-236 NNP denotes [
T2696 236-238 CD denotes 13
T2697 238-239 NNP denotes ]
T2698 240-244 VBD denotes were
T2699 245-253 VBN denotes examined
T2700 253-254 . denotes .
R1587 T2638 T2699 advmod Correspondingly,examined
R1588 T2639 T2699 punct ",",examined
R1590 T2640 T2642 nummod four,sites
R1593 T2641 T2642 compound NFκB,sites
R1594 T2642 T2699 nsubjpass sites,examined
R1596 T2643 T2642 prep from,sites
R1597 T2644 T2646 det the,promoter
R1598 T2645 T2646 compound TNFα,promoter
R1600 T2646 T2643 pobj promoter,from
R1601 T2647 T2646 punct (,promoter
R1602 T2648 T2649 nmod κ,consensus
R1604 T2649 T2646 appos consensus,promoter
R1605 T2650 T2649 punct ",",consensus
R1607 T2651 T2649 appos κ1,consensus
R1608 T2652 T2651 punct ",",κ1
R1609 T2653 T2651 conj κ2,κ1
R1611 T2654 T2653 punct ",",κ2
R1612 T2655 T2653 conj κ3,κ2
R1613 T2656 T2646 punct ),promoter
R1615 T2657 T2659 nmod [,]
R1616 T2658 T2659 nummod 27,]
R1617 T2659 T2642 appos ],sites
R1618 T2660 T2659 punct ",",]
R1619 T2661 T2664 det a,site
R1620 T2662 T2664 compound κ,site
R1622 T2663 T2664 compound consensus,site
R1623 T2664 T2659 appos site,]
R1624 T2665 T2664 prep from,site
R1626 T2666 T2668 det the,promoter
R1627 T2667 T2668 compound IL-8,promoter
R1628 T2668 T2671 compound promoter,]
R1629 T2669 T2671 compound [,]
R1631 T2670 T2671 compound 28,]
R1632 T2671 T2665 pobj ],from
R1633 T2672 T2671 punct ",",]
R1635 T2673 T2675 det an,site
R1636 T2674 T2675 compound NFAT,site
R1637 T2675 T2671 appos site,]
R1639 T2676 T2675 prep from,site
R1640 T2677 T2679 det the,promoter
R1641 T2678 T2679 compound IFNγ,promoter
R1643 T2679 T2676 pobj promoter,from
R1644 T2680 T2679 punct (,promoter
R1646 T2681 T2679 appos ATP2,promoter
R1647 T2682 T2679 punct ),promoter
R1648 T2683 T2699 nsubjpass [,examined
R1650 T2684 T2685 nummod 29,]
R1651 T2685 T2683 meta ],[
R1652 T2686 T2683 cc and,[
R1654 T2687 T2690 det a,site
R1655 T2688 T2690 compound consensus,site
R1656 T2689 T2690 compound NFIL-6,site
R1657 T2690 T2683 conj site,[
R1661 T2691 T2690 prep from,site
R1662 T2692 T2694 det the,promoter
R1664 T2693 T2694 compound IL-6,promoter
R1665 T2694 T2691 pobj promoter,from
R1667 T2695 T2690 appos [,site
R1668 T2696 T2697 nummod 13,]
R1669 T2697 T2690 conj ],site
R1670 T2698 T2699 auxpass were,examined
R1671 T2699 T2699 ROOT examined,examined
R1672 T2700 T2699 punct .,examined

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2016 22-32 Protein denotes NFκB sites
T2017 78-80 Protein denotes κ3
T2018 139-148 Protein denotes NFAT site
T2019 158-171 Protein denotes IFNγ promoter
T2020 173-177 Protein denotes ATP2

testone

Id Subject Object Predicate Lexical cue
T972 42-46 Protein denotes TNFα
T973 116-120 Protein denotes IL-8
T974 158-162 Protein denotes IFNγ
T975 221-225 Protein denotes IL-6
T989 121-129 Entity denotes promoter
T990 144-148 Entity denotes site
R368 T989 T973 partOf promoter,IL-8

test3

Id Subject Object Predicate Lexical cue
T1017 42-46 Protein denotes TNFα
T1018 116-120 Protein denotes IL-8
T1019 158-162 Protein denotes IFNγ
T1020 221-225 Protein denotes IL-6
T1060 42-46 Protein denotes TNFα
T1061 116-120 Protein denotes IL-8
T1062 158-162 Protein denotes IFNγ
T1063 221-225 Protein denotes IL-6