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PMC:1472690 / 39253-39505 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20464 243-251 NN denotes promoter
T20463 236-242 NN denotes IL-1RA
T20462 232-235 DT denotes the
T20461 225-231 IN denotes within
T20460 219-224 NN denotes sites
T20459 211-218 NN denotes binding
T20458 209-210 -RRB- denotes )
T20457 206-209 NN denotes TCT
T20456 202-205 NN denotes CTA
T20455 198-201 NN denotes TTA
T20454 194-197 NN denotes TAT
T20453 190-193 NN denotes AAA
T20452 186-189 NN denotes GTA
T20451 182-185 NN denotes AAG
T20450 178-181 NN denotes GAA
T20449 174-177 NN denotes GCA
T20448 170-173 NN denotes GGC
T20447 169-170 -LRB- denotes (
T20446 160-168 NN denotes NFATP2/3
T20445 156-159 CC denotes and
T20444 154-155 -RRB- denotes )
T20443 151-154 NN denotes GGG
T20442 147-150 NNP denotes AGT
T20441 143-146 NNP denotes CTT
T20440 139-142 NNP denotes ACA
T20439 135-138 NNP denotes GCG
T20438 131-134 NNP denotes ATT
T20437 127-130 NNP denotes TGG
T20436 123-126 NNP denotes CAG
T20435 119-122 NN denotes CAA
T20434 115-118 NN denotes TTA
T20433 114-115 -LRB- denotes (
T20432 107-113 NN denotes NFIL-6
T20431 103-106 IN denotes for
T20430 96-102 NN denotes oligos
T20429 88-95 VB denotes mutated
T20428 78-87 VB denotes including
T20427 76-77 -COMMA- denotes ,
T20426 70-76 IN denotes before
T20425 60-69 VB denotes described
T20424 57-59 IN denotes as
T20423 54-56 NN denotes GP
T20422 49-53 IN denotes with
T20421 38-48 NN denotes incubation
T20420 36-37 NN denotes h
T20419 34-35 CD denotes 1
T20418 28-33 IN denotes after
T20417 17-27 VB denotes determined
T20416 12-16 VB denotes were
T20415 5-11 NN denotes shifts
T20414 0-4 NN denotes Band
R13974 T20415 T20414 arg1Of shifts,Band
R13975 T20415 T20416 arg1Of shifts,were
R13976 T20415 T20417 arg2Of shifts,determined
R13977 T20417 T20416 arg2Of determined,were
R13978 T20417 T20418 arg1Of determined,after
R13979 T20419 T20420 arg1Of 1,h
R13980 T20421 T20419 arg1Of incubation,1
R13981 T20421 T20422 arg1Of incubation,with
R13982 T20421 T20424 arg1Of incubation,as
R13983 T20421 T20427 arg1Of incubation,","
R13984 T20421 T20428 arg1Of incubation,including
R13985 T20421 T20445 arg1Of incubation,and
R13986 T20423 T20422 arg2Of GP,with
R13987 T20425 T20424 arg2Of described,as
R13988 T20425 T20426 arg1Of described,before
R13989 T20430 T20428 arg2Of oligos,including
R13990 T20430 T20429 arg2Of oligos,mutated
R13991 T20430 T20431 arg1Of oligos,for
R13992 T20432 T20431 arg2Of NFIL-6,for
R13993 T20432 T20433 arg1Of NFIL-6,(
R13994 T20442 T20434 arg1Of AGT,TTA
R13995 T20442 T20435 arg1Of AGT,CAA
R13996 T20442 T20436 arg1Of AGT,CAG
R13997 T20442 T20437 arg1Of AGT,TGG
R13998 T20442 T20438 arg1Of AGT,ATT
R13999 T20442 T20439 arg1Of AGT,GCG
R14000 T20442 T20440 arg1Of AGT,ACA
R14001 T20442 T20441 arg1Of AGT,CTT
R14002 T20443 T20433 arg2Of GGG,(
R14003 T20443 T20442 arg1Of GGG,AGT
R14004 T20444 T20433 arg3Of ),(
R14005 T20445 T20418 arg2Of and,after
R14006 T20446 T20447 arg1Of NFATP2/3,(
R14007 T20457 T20447 arg2Of TCT,(
R14008 T20457 T20448 arg1Of TCT,GGC
R14009 T20457 T20449 arg1Of TCT,GCA
R14010 T20457 T20450 arg1Of TCT,GAA
R14011 T20457 T20451 arg1Of TCT,AAG
R14012 T20457 T20452 arg1Of TCT,GTA
R14013 T20457 T20453 arg1Of TCT,AAA
R14014 T20457 T20454 arg1Of TCT,TAT
R14015 T20457 T20455 arg1Of TCT,TTA
R14016 T20457 T20456 arg1Of TCT,CTA
R14017 T20458 T20447 arg3Of ),(
R14018 T20460 T20445 arg2Of sites,and
R14019 T20460 T20446 arg1Of sites,NFATP2/3
R14020 T20460 T20459 arg1Of sites,binding
R14021 T20460 T20461 arg1Of sites,within
R14022 T20464 T20461 arg2Of promoter,within
R14023 T20464 T20462 arg1Of promoter,the
R14024 T20464 T20463 arg1Of promoter,IL-1RA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T20290 236-242 Protein denotes IL-1RA
T20289 167-168 Protein denotes 3
T20288 160-166 Protein denotes NFATP2
T20287 107-113 Protein denotes NFIL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20577 236-242 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA

GO-BP

Id Subject Object Predicate Lexical cue
T20272 174-177 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA

GO-MF

Id Subject Object Predicate Lexical cue
T20300 174-177 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T20295 211-218 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T20264 0-252 Sentence denotes Band shifts were determined after 1 h incubation with GP as described before, including mutated oligos for NFIL-6 (TTA CAA CAG TGG ATT GCG ACA CTT AGT GGG) and NFATP2/3 (GGC GCA GAA AAG GTA AAA TAT TTA CTA TCT) binding sites within the IL-1RA promoter.
T268 0-252 Sentence denotes Band shifts were determined after 1 h incubation with GP as described before, including mutated oligos for NFIL-6 (TTA CAA CAG TGG ATT GCG ACA CTT AGT GGG) and NFATP2/3 (GGC GCA GAA AAG GTA AAA TAT TTA CTA TCT) binding sites within the IL-1RA promoter.

simple1

Id Subject Object Predicate Lexical cue
T20328 236-242 Protein denotes IL-1RA
T20327 167-168 Protein denotes 3
T20326 160-166 Protein denotes NFATP2
T20325 107-113 Protein denotes NFIL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20951 236-242 Protein denotes IL-1RA
T20950 167-168 Protein denotes 3
T20949 160-166 Protein denotes NFATP2
T20948 107-113 Protein denotes NFIL-6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20587 236-242 Protein denotes IL-1RA
T20586 167-168 Protein denotes 3
T20585 160-166 Protein denotes NFATP2
T20584 107-113 Protein denotes NFIL-6

DLUT931

Id Subject Object Predicate Lexical cue
T20601 211-218 Binding denotes binding
T20596 236-242 Protein denotes IL-1RA
T20595 167-168 Protein denotes 3
T20594 160-166 Protein denotes NFATP2
T20593 107-113 Protein denotes NFIL-6
R14141 T20593 T20601 themeOf NFIL-6,binding
R14142 T20593 T20601 themeOf NFIL-6,binding
R14143 T20594 T20601 themeOf NFATP2,binding
R14144 T20594 T20601 themeOf NFATP2,binding
R14145 T20595 T20601 themeOf 3,binding
R14146 T20596 T20601 themeOf IL-1RA,binding
R14147 T20596 T20601 themeOf IL-1RA,binding
R14148 T20596 T20601 themeOf IL-1RA,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20938 219-224 Entity denotes sites
T20937 170-173 Protein denotes GGC
T20932 170-197 Protein denotes GGC GCA GAA AAG GTA AAA TAT
T20928 131-138 Protein denotes ATT GCG
T20926 167-168 Protein denotes 3
T20924 54-56 Protein denotes GP
T20923 107-113 Protein denotes NFIL-6
T20922 170-197 Protein denotes GGC GCA GAA AAG GTA AAA TAT
T20920 170-197 Entity denotes GGC GCA GAA AAG GTA AAA TAT
T20919 160-168 Protein denotes NFATP2/3
T20915 143-154 Protein denotes CTT AGT GGG
T20910 143-154 Entity denotes CTT AGT GGG
T20909 232-251 Entity denotes the IL-1RA promoter
T20906 34-56 Entity denotes 1 h incubation with GP
T20905 160-168 Protein denotes NFATP2/3
T20904 174-177 Protein denotes GCA
T20902 182-185 Entity denotes AAG
T20899 0-4 Entity denotes Band
T20898 236-242 Protein denotes IL-1RA
T20895 202-205 Entity denotes CTA
R14420 T20909 T20898 partOf the IL-1RA promoter,IL-1RA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20753 251-252 . denotes .
T20752 243-251 NN denotes promoter
T20751 236-242 NN denotes IL-1RA
T20750 232-235 DT denotes the
T20749 225-231 IN denotes within
T20748 219-224 NNS denotes sites
T20747 211-218 JJ denotes binding
T20746 209-210 -RRB- denotes )
T20745 206-209 NNP denotes TCT
T20744 202-205 NNP denotes CTA
T20724 123-126 NNP denotes CAG
T20723 119-122 NNP denotes CAA
T20722 115-118 NNP denotes TTA
T20721 114-115 -LRB- denotes (
T20720 107-113 NNP denotes NFIL-6
T20719 103-106 IN denotes for
T20718 96-102 NNS denotes oligos
T20717 88-95 VBN denotes mutated
T20716 78-87 VBG denotes including
T20715 76-77 , denotes ,
T20714 70-76 RB denotes before
T20713 60-69 VBN denotes described
T20712 57-59 IN denotes as
T20711 54-56 NNP denotes GP
T20710 49-53 IN denotes with
T20709 38-48 NN denotes incubation
T20708 36-37 NN denotes h
T20707 34-35 CD denotes 1
T20706 28-33 IN denotes after
T20705 17-27 VBN denotes determined
T20704 12-16 VBD denotes were
T20703 5-11 NNS denotes shifts
T20702 0-4 NNP denotes Band
T20743 198-201 NNP denotes TTA
T20742 194-197 NNP denotes TAT
T20741 190-193 NNP denotes AAA
T20740 186-189 NNP denotes GTA
T20739 182-185 NNP denotes AAG
T20738 178-181 NNP denotes GAA
T20737 174-177 NNP denotes GCA
T20736 170-173 NNP denotes GGC
T20735 169-170 -LRB- denotes (
T20734 160-168 NNP denotes NFATP2/3
T20733 156-159 CC denotes and
T20732 154-155 -RRB- denotes )
T20731 151-154 NNP denotes GGG
T20730 147-150 NNP denotes AGT
T20729 143-146 NNP denotes CTT
T20728 139-142 NNP denotes ACA
T20727 135-138 NNP denotes GCG
T20726 131-134 NNP denotes ATT
T20725 127-130 NNP denotes TGG
R14243 T20702 T20703 compound Band,shifts
R14244 T20703 T20705 nsubjpass shifts,determined
R14245 T20704 T20705 auxpass were,determined
R14246 T20705 T20705 ROOT determined,determined
R14247 T20706 T20705 prep after,determined
R14248 T20707 T20709 nummod 1,incubation
R14249 T20708 T20709 compound h,incubation
R14250 T20709 T20706 pobj incubation,after
R14251 T20710 T20709 prep with,incubation
R14252 T20711 T20710 pobj GP,with
R14253 T20712 T20713 mark as,described
R14254 T20713 T20709 advcl described,incubation
R14255 T20714 T20713 advmod before,described
R14256 T20715 T20709 punct ",",incubation
R14257 T20716 T20709 prep including,incubation
R14258 T20717 T20718 amod mutated,oligos
R14259 T20718 T20716 pobj oligos,including
R14260 T20719 T20718 prep for,oligos
R14261 T20720 T20719 pobj NFIL-6,for
R14262 T20721 T20731 punct (,GGG
R14263 T20722 T20727 compound TTA,GCG
R14264 T20723 T20727 compound CAA,GCG
R14265 T20724 T20727 compound CAG,GCG
R14266 T20725 T20727 compound TGG,GCG
R14267 T20726 T20727 compound ATT,GCG
R14268 T20727 T20731 compound GCG,GGG
R14269 T20728 T20729 compound ACA,CTT
R14270 T20729 T20731 compound CTT,GGG
R14271 T20730 T20731 compound AGT,GGG
R14272 T20731 T20720 appos GGG,NFIL-6
R14273 T20732 T20731 punct ),GGG
R14274 T20733 T20720 cc and,NFIL-6
R14275 T20734 T20745 compound NFATP2/3,TCT
R14276 T20735 T20740 punct (,GTA
R14277 T20736 T20740 compound GGC,GTA
R14278 T20737 T20740 compound GCA,GTA
R14279 T20738 T20740 compound GAA,GTA
R14280 T20739 T20740 compound AAG,GTA
R14281 T20740 T20745 compound GTA,TCT
R14282 T20741 T20745 compound AAA,TCT
R14283 T20742 T20745 compound TAT,TCT
R14284 T20743 T20745 compound TTA,TCT
R14285 T20744 T20745 compound CTA,TCT
R14286 T20745 T20720 conj TCT,NFIL-6
R14287 T20746 T20718 punct ),oligos
R14288 T20747 T20748 amod binding,sites
R14289 T20748 T20716 pobj sites,including
R14290 T20749 T20748 prep within,sites
R14291 T20750 T20752 det the,promoter
R14292 T20751 T20752 compound IL-1RA,promoter
R14293 T20752 T20749 pobj promoter,within
R14294 T20753 T20705 punct .,determined

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20309 236-251 Protein denotes IL-1RA promoter
T20308 202-209 Protein denotes CTA TCT
T20307 182-201 Protein denotes AAG GTA AAA TAT TTA
T20306 170-177 Protein denotes GGC GCA
T20305 160-168 Protein denotes NFATP2/3
T20304 147-154 Protein denotes AGT GGG
T20303 131-146 Protein denotes ATT GCG ACA CTT
T20302 115-130 Protein denotes TTA CAA CAG TGG
T20301 107-113 Protein denotes NFIL-6

testone

Id Subject Object Predicate Lexical cue
T20236 236-242 Protein denotes IL-1RA
T20235 167-168 Protein denotes 3
T20234 160-166 Protein denotes NFATP2
T20233 107-113 Protein denotes NFIL-6

test3

Id Subject Object Predicate Lexical cue
T20256 236-242 Protein denotes IL-1RA
T20255 167-168 Protein denotes 3
T20254 160-166 Protein denotes NFATP2
T20253 107-113 Protein denotes NFIL-6
T20246 236-242 Protein denotes IL-1RA
T20245 167-168 Protein denotes 3
T20244 160-166 Protein denotes NFATP2
T20243 107-113 Protein denotes NFIL-6