> top > docs > PMC:1472690 > spans > 38765-40018 > annotations

PMC:1472690 / 38765-40018 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20575 1250-1252 NN denotes GP
T20574 1245-1249 IN denotes with
T20573 1234-1244 NN denotes incubation
T20572 1232-1233 NN denotes h
T20571 1229-1231 CD denotes 24
T20570 1223-1228 IN denotes after
T20569 1217-1222 NN denotes ELISA
T20568 1214-1216 IN denotes by
T20567 1202-1213 NN denotes supernatant
T20566 1198-1201 DT denotes the
T20565 1195-1197 IN denotes in
T20564 1186-1194 VB denotes measured
T20563 1182-1185 VB denotes was
T20562 1174-1181 NN denotes protein
T20561 1167-1173 NN denotes IL-1RA
T20560 1163-1165 NN denotes GP
T20559 1158-1162 IN denotes with
T20558 1147-1157 NN denotes incubation
T20557 1145-1146 NN denotes h
T20556 1142-1144 CD denotes 18
T20555 1132-1141 VB denotes following
T20554 1130-1131 -RRB- denotes )
T20553 1125-1130 NN denotes GAPDH
T20552 1121-1124 IN denotes for
T20551 1114-1120 NN denotes cycles
T20550 1111-1113 CD denotes 25
T20549 1109-1110 -COMMA- denotes ,
T20548 1106-1109 NN denotes sec
T20547 1103-1105 CD denotes 45
T20546 1099-1102 IN denotes for
T20545 1094-1098 NN denotes 72°C
T20544 1090-1093 CC denotes and
T20543 1086-1089 NN denotes sec
T20542 1083-1085 CD denotes 30
T20541 1079-1082 IN denotes for
T20540 1074-1078 NN denotes 50°C
T20539 1072-1073 -COMMA- denotes ,
T20538 1069-1072 NN denotes sec
T20537 1066-1068 CD denotes 30
T20536 1062-1065 IN denotes for
T20535 1057-1061 NN denotes 94°C
T20534 1053-1056 CC denotes and
T20533 1046-1052 NN denotes IL-1RA
T20532 1042-1045 IN denotes for
T20531 1035-1041 NN denotes cycles
T20530 1032-1034 CD denotes 25
T20529 1030-1031 -COMMA- denotes ,
T20528 1027-1030 NN denotes sec
T20527 1024-1026 CD denotes 30
T20526 1022-1023 -COMMA- denotes ,
T20525 1018-1022 NN denotes 72°C
T20524 1016-1017 -COMMA- denotes ,
T20523 1013-1016 NN denotes sec
T20522 1010-1012 CD denotes 30
T20521 1008-1009 -COMMA- denotes ,
T20520 1004-1008 NN denotes 55°C
T20519 1002-1003 -COMMA- denotes ,
T20518 999-1002 NN denotes sec
T20517 996-998 CD denotes 30
T20516 994-995 -COMMA- denotes ,
T20515 990-994 NN denotes 95°C
T20514 989-990 -LRB- denotes (
T20513 987-988 -RRB- denotes )
T20512 981-987 NN denotes Biomol
T20511 980-981 -LRB- denotes (
T20510 970-979 NN denotes mastermix
T20509 966-969 NN denotes PCR
T20508 964-965 -DQE- denotes "
T20507 959-964 JJ denotes sweet
T20506 958-959 -DQS- denotes "
T20505 949-957 NNP denotes HotStart
T20504 947-948 DT denotes a
T20503 942-946 IN denotes with
T20502 938-941 NN denotes PCR
T20501 935-937 IN denotes by
T20500 923-934 NN denotes transcripts
T20499 917-922 NN denotes GAPDH
T20498 913-916 CC denotes and
T20497 906-912 NN denotes IL-1RA
T20496 902-905 IN denotes for
T20495 893-901 VB denotes analysed
T20494 889-892 CC denotes and
T20493 887-888 -RRB- denotes )
T20492 881-887 NN denotes Biomol
T20491 880-881 -LRB- denotes (
T20490 876-879 NN denotes kit
T20489 869-875 NNP denotes Strand
T20488 863-868 NNP denotes First
T20487 857-862 NNP denotes Ready
T20486 849-856 NN denotes Reactin
T20485 844-848 IN denotes with
T20484 839-843 NN denotes cDNA
T20483 834-838 IN denotes into
T20482 822-833 VB denotes transcribed
T20481 818-821 VB denotes was
T20480 814-817 NN denotes RNA
T20479 804-813 NN denotes messenger
T20478 800-803 CC denotes and
T20477 798-799 -RRB- denotes )
T20476 791-798 NNP denotes Germany
T20475 789-790 -COMMA- denotes ,
T20474 783-789 NN denotes Qiagen
T20473 782-783 -LRB- denotes (
T20472 778-781 NN denotes kit
T20471 771-777 NN denotes RNeasy
T20470 768-770 DT denotes an
T20469 763-767 IN denotes with
T20468 754-762 VB denotes isolated
T20467 750-753 VB denotes was
T20466 746-749 NN denotes RNA
T20465 741-745 NN denotes PBMC
T20464 731-739 NN denotes promoter
T20463 724-730 NN denotes IL-1RA
T20462 720-723 DT denotes the
T20461 713-719 IN denotes within
T20460 707-712 NN denotes sites
T20459 699-706 NN denotes binding
T20458 697-698 -RRB- denotes )
T20457 694-697 NN denotes TCT
T20456 690-693 NN denotes CTA
T20455 686-689 NN denotes TTA
T20454 682-685 NN denotes TAT
T20453 678-681 NN denotes AAA
T20452 674-677 NN denotes GTA
T20451 670-673 NN denotes AAG
T20450 666-669 NN denotes GAA
T20449 662-665 NN denotes GCA
T20448 658-661 NN denotes GGC
T20447 657-658 -LRB- denotes (
T20446 648-656 NN denotes NFATP2/3
T20445 644-647 CC denotes and
T20444 642-643 -RRB- denotes )
T20443 639-642 NN denotes GGG
T20442 635-638 NNP denotes AGT
T20441 631-634 NNP denotes CTT
T20440 627-630 NNP denotes ACA
T20439 623-626 NNP denotes GCG
T20438 619-622 NNP denotes ATT
T20437 615-618 NNP denotes TGG
T20436 611-614 NNP denotes CAG
T20435 607-610 NN denotes CAA
T20434 603-606 NN denotes TTA
T20433 602-603 -LRB- denotes (
T20432 595-601 NN denotes NFIL-6
T20431 591-594 IN denotes for
T20430 584-590 NN denotes oligos
T20429 576-583 VB denotes mutated
T20428 566-575 VB denotes including
T20427 564-565 -COMMA- denotes ,
T20370 235-236 -COLON- denotes :
T20369 234-235 -RRB- denotes )
T20368 224-234 NN denotes inhibition
T20367 222-223 NN denotes %
T20366 220-222 CD denotes 50
T20365 215-219 IN denotes upon
T20364 209-214 VB denotes based
T20363 204-208 VB denotes were
T20362 189-203 NN denotes concentrations
T20361 188-189 -LRB- denotes (
T20360 177-187 NN denotes substances
T20359 167-176 VB denotes following
T20358 163-166 DT denotes the
T20357 160-162 IN denotes of
T20356 155-159 DT denotes each
T20355 150-154 IN denotes with
T20354 148-149 NN denotes h
T20353 146-147 CD denotes 1
T20352 142-145 IN denotes for
T20351 132-141 VB denotes incubated
T20350 127-131 VB denotes were
T20349 122-126 NN denotes PBMC
T20348 120-121 -COMMA- denotes ,
T20347 112-120 NN denotes promoter
T20346 105-111 NN denotes IL-1RA
T20345 101-104 DT denotes the
T20344 98-100 TO denotes to
T20343 90-97 NN denotes factors
T20342 76-89 NN denotes transcription
T20341 73-75 IN denotes of
T20340 65-72 NN denotes binding
T20339 61-64 CC denotes and
T20338 47-60 NN denotes translocation
T20337 39-46 VB denotes inhibit
T20336 36-38 TO denotes To
T20335 28-35 NN denotes factors
T20334 14-27 NN denotes transcription
T20333 11-13 IN denotes of
T20332 0-10 NN denotes Inhibition
T20426 558-564 IN denotes before
T20425 548-557 VB denotes described
T20424 545-547 IN denotes as
T20423 542-544 NN denotes GP
T20422 537-541 IN denotes with
T20421 526-536 NN denotes incubation
T20420 524-525 NN denotes h
T20419 522-523 CD denotes 1
T20418 516-521 IN denotes after
T20417 505-515 VB denotes determined
T20416 500-504 VB denotes were
T20415 493-499 NN denotes shifts
T20414 488-492 NN denotes Band
T20413 484-486 NN denotes GP
T20412 479-483 IN denotes with
T20411 468-478 NN denotes incubation
T20410 465-467 TO denotes to
T20409 459-464 JJ denotes prior
T20408 457-458 -RRB- denotes )
T20407 444-457 NNP denotes Biotechnology
T20406 439-443 NNP denotes Cruz
T20405 433-438 NNP denotes Santa
T20404 432-433 -LRB- denotes (
T20403 418-431 NN denotes cycloheximide
T20402 412-417 NN denotes μg/ml
T20401 409-411 CD denotes 10
T20400 407-408 -COLON- denotes ;
T20399 406-407 -RRB- denotes )
T20398 399-406 NNP denotes Germany
T20397 397-398 -COMMA- denotes ,
T20396 392-397 NNP denotes Soden
T20395 388-391 NNP denotes Bad
T20394 386-387 -COMMA- denotes ,
T20393 375-386 NNP denotes Biosciences
T20392 358-374 NNP denotes Calbiochem-Merck
T20391 357-358 -LRB- denotes (
T20390 355-356 NN denotes A
T20389 343-354 NN denotes cyclosporin
T20388 337-342 NN denotes ng/ml
T20387 333-336 CD denotes 400
T20386 331-332 -COLON- denotes ;
T20385 330-331 -RRB- denotes )
T20384 323-330 NNP denotes Germany
T20383 321-322 -COMMA- denotes ,
T20382 314-321 NNP denotes Hamburg
T20381 312-313 -COMMA- denotes ,
T20380 306-312 NNP denotes Biomol
T20379 305-306 -LRB- denotes (
T20378 303-304 -COMMA- denotes ,
T20377 302-303 -RRB- denotes )
T20376 255-302 NN denotes caffeic-3,4-dihydroxycinnamic-acid-phenyl-ester
T20375 254-255 -LRB- denotes (
T20374 249-253 NN denotes CAPE
T20373 246-248 IN denotes of
T20372 240-245 NN denotes μg/ml
T20371 237-239 CD denotes 50
R13892 T20332 T20333 arg1Of Inhibition,of
R13893 T20335 T20333 arg2Of factors,of
R13894 T20335 T20334 arg1Of factors,transcription
R13895 T20337 T20336 arg1Of inhibit,To
R13896 T20338 T20339 arg1Of translocation,and
R13897 T20339 T20337 arg2Of and,inhibit
R13898 T20340 T20339 arg2Of binding,and
R13899 T20340 T20341 arg1Of binding,of
R13900 T20340 T20344 arg1Of binding,to
R13901 T20343 T20341 arg2Of factors,of
R13902 T20343 T20342 arg1Of factors,transcription
R13903 T20347 T20344 arg2Of promoter,to
R13904 T20347 T20345 arg1Of promoter,the
R13905 T20347 T20346 arg1Of promoter,IL-1RA
R13906 T20349 T20337 arg1Of PBMC,inhibit
R13907 T20349 T20350 arg1Of PBMC,were
R13908 T20349 T20351 arg2Of PBMC,incubated
R13909 T20351 T20336 modOf incubated,To
R13910 T20351 T20348 arg1Of incubated,","
R13911 T20351 T20350 arg2Of incubated,were
R13912 T20351 T20352 arg1Of incubated,for
R13913 T20351 T20355 arg1Of incubated,with
R13914 T20351 T20361 arg1Of incubated,(
R13915 T20351 T20370 arg1Of incubated,:
R13916 T20354 T20352 arg2Of h,for
R13917 T20354 T20353 arg1Of h,1
R13918 T20356 T20355 arg2Of each,with
R13919 T20356 T20357 arg1Of each,of
R13920 T20360 T20357 arg2Of substances,of
R13921 T20360 T20358 arg1Of substances,the
R13922 T20360 T20359 arg1Of substances,following
R13923 T20362 T20363 arg1Of concentrations,were
R13924 T20362 T20364 arg2Of concentrations,based
R13925 T20364 T20361 arg2Of based,(
R13926 T20364 T20363 arg2Of based,were
R13927 T20364 T20365 arg1Of based,upon
R13928 T20366 T20367 arg1Of 50,%
R13929 T20368 T20365 arg2Of inhibition,upon
R13930 T20368 T20366 arg1Of inhibition,50
R13931 T20369 T20361 arg3Of ),(
R13932 T20372 T20371 arg1Of μg/ml,50
R13933 T20372 T20373 arg1Of μg/ml,of
R13934 T20372 T20386 arg1Of μg/ml,;
R13935 T20374 T20373 arg2Of CAPE,of
R13936 T20374 T20375 arg1Of CAPE,(
R13937 T20374 T20378 arg1Of CAPE,","
R13938 T20374 T20379 arg1Of CAPE,(
R13939 T20376 T20375 arg2Of "caffeic-3,4-dihydroxycinnamic-acid-phenyl-ester",(
R13940 T20377 T20375 arg3Of ),(
R13941 T20380 T20381 arg1Of Biomol,","
R13942 T20381 T20379 arg2Of ",",(
R13943 T20381 T20383 arg1Of ",",","
R13944 T20382 T20381 arg2Of Hamburg,","
R13945 T20384 T20383 arg2Of Germany,","
R13946 T20385 T20379 arg3Of ),(
R13947 T20387 T20388 arg1Of 400,ng/ml
R13948 T20390 T20387 arg1Of A,400
R13949 T20390 T20389 arg1Of A,cyclosporin
R13950 T20390 T20391 arg1Of A,(
R13951 T20390 T20400 arg1Of A,;
R13952 T20393 T20391 arg2Of Biosciences,(
R13953 T20393 T20392 arg1Of Biosciences,Calbiochem-Merck
R13954 T20393 T20394 arg1Of Biosciences,","
R13955 T20396 T20394 arg2Of Soden,","
R13956 T20396 T20395 arg1Of Soden,Bad
R13957 T20396 T20397 arg1Of Soden,","
R13958 T20398 T20397 arg2Of Germany,","
R13959 T20399 T20391 arg3Of ),(
R13960 T20400 T20386 arg2Of ;,;
R13961 T20400 T20409 arg1Of ;,prior
R13962 T20403 T20400 arg2Of cycloheximide,;
R13963 T20403 T20401 arg1Of cycloheximide,10
R13964 T20403 T20402 arg1Of cycloheximide,μg/ml
R13965 T20403 T20404 arg1Of cycloheximide,(
R13966 T20407 T20404 arg2Of Biotechnology,(
R13967 T20407 T20405 arg1Of Biotechnology,Santa
R13968 T20407 T20406 arg1Of Biotechnology,Cruz
R13969 T20408 T20404 arg3Of ),(
R13970 T20409 T20410 arg1Of prior,to
R13971 T20411 T20410 arg2Of incubation,to
R13972 T20411 T20412 arg1Of incubation,with
R13973 T20413 T20412 arg2Of GP,with
R13974 T20415 T20414 arg1Of shifts,Band
R13975 T20415 T20416 arg1Of shifts,were
R13976 T20415 T20417 arg2Of shifts,determined
R13977 T20417 T20416 arg2Of determined,were
R13978 T20417 T20418 arg1Of determined,after
R13979 T20419 T20420 arg1Of 1,h
R13980 T20421 T20419 arg1Of incubation,1
R13981 T20421 T20422 arg1Of incubation,with
R13982 T20421 T20424 arg1Of incubation,as
R13983 T20421 T20427 arg1Of incubation,","
R13984 T20421 T20428 arg1Of incubation,including
R13985 T20421 T20445 arg1Of incubation,and
R13986 T20423 T20422 arg2Of GP,with
R13987 T20425 T20424 arg2Of described,as
R13988 T20425 T20426 arg1Of described,before
R13989 T20430 T20428 arg2Of oligos,including
R13990 T20430 T20429 arg2Of oligos,mutated
R13991 T20430 T20431 arg1Of oligos,for
R13992 T20432 T20431 arg2Of NFIL-6,for
R13993 T20432 T20433 arg1Of NFIL-6,(
R13994 T20442 T20434 arg1Of AGT,TTA
R13995 T20442 T20435 arg1Of AGT,CAA
R13996 T20442 T20436 arg1Of AGT,CAG
R13997 T20442 T20437 arg1Of AGT,TGG
R13998 T20442 T20438 arg1Of AGT,ATT
R13999 T20442 T20439 arg1Of AGT,GCG
R14000 T20442 T20440 arg1Of AGT,ACA
R14001 T20442 T20441 arg1Of AGT,CTT
R14002 T20443 T20433 arg2Of GGG,(
R14003 T20443 T20442 arg1Of GGG,AGT
R14004 T20444 T20433 arg3Of ),(
R14005 T20445 T20418 arg2Of and,after
R14006 T20446 T20447 arg1Of NFATP2/3,(
R14007 T20457 T20447 arg2Of TCT,(
R14008 T20457 T20448 arg1Of TCT,GGC
R14009 T20457 T20449 arg1Of TCT,GCA
R14010 T20457 T20450 arg1Of TCT,GAA
R14011 T20457 T20451 arg1Of TCT,AAG
R14012 T20457 T20452 arg1Of TCT,GTA
R14013 T20457 T20453 arg1Of TCT,AAA
R14014 T20457 T20454 arg1Of TCT,TAT
R14015 T20457 T20455 arg1Of TCT,TTA
R14016 T20457 T20456 arg1Of TCT,CTA
R14017 T20458 T20447 arg3Of ),(
R14018 T20460 T20445 arg2Of sites,and
R14019 T20460 T20446 arg1Of sites,NFATP2/3
R14020 T20460 T20459 arg1Of sites,binding
R14021 T20460 T20461 arg1Of sites,within
R14022 T20464 T20461 arg2Of promoter,within
R14023 T20464 T20462 arg1Of promoter,the
R14024 T20464 T20463 arg1Of promoter,IL-1RA
R14025 T20466 T20465 arg1Of RNA,PBMC
R14026 T20466 T20467 arg1Of RNA,was
R14027 T20466 T20468 arg2Of RNA,isolated
R14028 T20468 T20467 arg2Of isolated,was
R14029 T20468 T20469 arg1Of isolated,with
R14030 T20468 T20473 arg1Of isolated,(
R14031 T20468 T20478 arg1Of isolated,and
R14032 T20472 T20469 arg2Of kit,with
R14033 T20472 T20470 arg1Of kit,an
R14034 T20472 T20471 arg1Of kit,RNeasy
R14035 T20474 T20473 arg2Of Qiagen,(
R14036 T20474 T20475 arg1Of Qiagen,","
R14037 T20476 T20475 arg2Of Germany,","
R14038 T20477 T20473 arg3Of ),(
R14039 T20478 T20511 arg1Of and,(
R14040 T20478 T20514 arg1Of and,(
R14041 T20478 T20555 arg1Of and,following
R14042 T20480 T20479 arg1Of RNA,messenger
R14043 T20480 T20481 arg1Of RNA,was
R14044 T20480 T20482 arg2Of RNA,transcribed
R14045 T20480 T20495 arg2Of RNA,analysed
R14046 T20482 T20483 arg1Of transcribed,into
R14047 T20482 T20494 arg1Of transcribed,and
R14048 T20484 T20483 arg2Of cDNA,into
R14049 T20484 T20485 arg1Of cDNA,with
R14050 T20489 T20487 arg1Of Strand,Ready
R14051 T20489 T20488 arg1Of Strand,First
R14052 T20490 T20485 arg2Of kit,with
R14053 T20490 T20486 arg1Of kit,Reactin
R14054 T20490 T20489 arg1Of kit,Strand
R14055 T20490 T20491 arg1Of kit,(
R14056 T20492 T20491 arg2Of Biomol,(
R14057 T20493 T20491 arg3Of ),(
R14058 T20494 T20478 arg2Of and,and
R14059 T20494 T20481 arg2Of and,was
R14060 T20495 T20494 arg2Of analysed,and
R14061 T20495 T20496 arg1Of analysed,for
R14062 T20497 T20498 arg1Of IL-1RA,and
R14063 T20499 T20498 arg2Of GAPDH,and
R14064 T20500 T20496 arg2Of transcripts,for
R14065 T20500 T20497 arg1Of transcripts,IL-1RA
R14066 T20500 T20499 arg1Of transcripts,GAPDH
R14067 T20502 T20495 arg1Of PCR,analysed
R14068 T20502 T20501 arg2Of PCR,by
R14069 T20502 T20503 arg1Of PCR,with
R14070 T20510 T20503 arg2Of mastermix,with
R14071 T20510 T20504 arg1Of mastermix,a
R14072 T20510 T20505 arg1Of mastermix,HotStart
R14073 T20510 T20506 arg1Of mastermix,""""
R14074 T20510 T20507 arg1Of mastermix,sweet
R14075 T20510 T20508 arg1Of mastermix,""""
R14076 T20510 T20509 arg1Of mastermix,PCR
R14077 T20512 T20511 arg2Of Biomol,(
R14078 T20513 T20511 arg3Of ),(
R14079 T20515 T20516 arg1Of 95°C,","
R14080 T20516 T20519 arg1Of ",",","
R14081 T20518 T20516 arg2Of sec,","
R14082 T20518 T20517 arg1Of sec,30
R14083 T20519 T20521 arg1Of ",",","
R14084 T20520 T20519 arg2Of 55°C,","
R14085 T20521 T20524 arg1Of ",",","
R14086 T20523 T20521 arg2Of sec,","
R14087 T20523 T20522 arg1Of sec,30
R14088 T20524 T20526 arg1Of ",",","
R14089 T20525 T20524 arg2Of 72°C,","
R14090 T20526 T20529 arg1Of ",",","
R14091 T20528 T20526 arg2Of sec,","
R14092 T20528 T20527 arg1Of sec,30
R14093 T20529 T20539 arg1Of ",",","
R14094 T20531 T20529 arg2Of cycles,","
R14095 T20531 T20530 arg1Of cycles,25
R14096 T20531 T20532 arg1Of cycles,for
R14097 T20533 T20534 arg1Of IL-1RA,and
R14098 T20534 T20532 arg2Of and,for
R14099 T20534 T20536 arg1Of and,for
R14100 T20535 T20534 arg2Of 94°C,and
R14101 T20538 T20536 arg2Of sec,for
R14102 T20538 T20537 arg1Of sec,30
R14103 T20539 T20549 arg1Of ",",","
R14104 T20540 T20539 arg2Of 50°C,","
R14105 T20540 T20541 arg1Of 50°C,for
R14106 T20543 T20544 arg1Of sec,and
R14107 T20544 T20541 arg2Of and,for
R14108 T20544 T20542 arg1Of and,30
R14109 T20544 T20546 arg1Of and,for
R14110 T20545 T20544 arg2Of 72°C,and
R14111 T20548 T20546 arg2Of sec,for
R14112 T20548 T20547 arg1Of sec,45
R14113 T20549 T20514 arg2Of ",",(
R14114 T20551 T20549 arg2Of cycles,","
R14115 T20551 T20550 arg1Of cycles,25
R14116 T20551 T20552 arg1Of cycles,for
R14117 T20553 T20552 arg2Of GAPDH,for
R14118 T20554 T20514 arg3Of ),(
R14119 T20558 T20555 arg2Of incubation,following
R14120 T20558 T20556 arg1Of incubation,18
R14121 T20558 T20557 arg1Of incubation,h
R14122 T20558 T20559 arg1Of incubation,with
R14123 T20560 T20559 arg2Of GP,with
R14124 T20562 T20561 arg1Of protein,IL-1RA
R14125 T20562 T20563 arg1Of protein,was
R14126 T20562 T20564 arg2Of protein,measured
R14127 T20564 T20563 arg2Of measured,was
R14128 T20564 T20565 arg1Of measured,in
R14129 T20564 T20570 arg1Of measured,after
R14130 T20567 T20565 arg2Of supernatant,in
R14131 T20567 T20566 arg1Of supernatant,the
R14132 T20567 T20568 arg1Of supernatant,by
R14133 T20569 T20568 arg2Of ELISA,by
R14134 T20571 T20572 arg1Of 24,h
R14135 T20573 T20570 arg2Of incubation,after
R14136 T20573 T20571 arg1Of incubation,24
R14137 T20573 T20574 arg1Of incubation,with
R14138 T20575 T20574 arg2Of GP,with

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T20293 1167-1173 Protein denotes IL-1RA
T20292 917-922 Protein denotes GAPDH
T20291 906-912 Protein denotes IL-1RA
T20290 724-730 Protein denotes IL-1RA
T20289 655-656 Protein denotes 3
T20288 648-654 Protein denotes NFATP2
T20287 595-601 Protein denotes NFIL-6
T20286 105-111 Protein denotes IL-1RA

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20582 1125-1130 http://www.uniprot.org/uniprot/P04406 denotes GAPDH
T20581 917-922 http://www.uniprot.org/uniprot/P04406 denotes GAPDH
T20580 1167-1173 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T20579 1046-1052 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T20578 906-912 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T20577 724-730 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T20576 105-111 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA

GO-BP

Id Subject Object Predicate Lexical cue
T20272 662-665 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T20271 76-89 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T20270 14-27 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T20269 0-35 http://purl.obolibrary.org/obo/GO_0032792 denotes Inhibition of transcription factors
T20268 0-35 http://purl.obolibrary.org/obo/GO_0043433 denotes Inhibition of transcription factors
T20267 0-35 http://purl.obolibrary.org/obo/GO_1901484 denotes Inhibition of transcription factors

GO-MF

Id Subject Object Predicate Lexical cue
T20300 662-665 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T20299 65-97 http://purl.obolibrary.org/obo/GO_0070491 denotes binding of transcription factors
T20298 65-97 http://purl.obolibrary.org/obo/GO_0043425 denotes binding of transcription factors
T20297 65-97 http://purl.obolibrary.org/obo/GO_0033613 denotes binding of transcription factors
T20296 65-97 http://purl.obolibrary.org/obo/GO_0008134 denotes binding of transcription factors
T20295 699-706 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T20294 65-72 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T20266 1167-1253 Sentence denotes IL-1RA protein was measured in the supernatant by ELISA after 24 h incubation with GP.
T20265 741-1166 Sentence denotes PBMC RNA was isolated with an RNeasy kit (Qiagen, Germany) and messenger RNA was transcribed into cDNA with Reactin Ready First Strand kit (Biomol) and analysed for IL-1RA and GAPDH transcripts by PCR with a HotStart "sweet" PCR mastermix (Biomol) (95°C, 30 sec, 55°C, 30 sec, 72°C, 30 sec, 25 cycles for IL-1RA and 94°C for 30 sec, 50°C for 30 sec and 72°C for 45 sec, 25 cycles for GAPDH) following 18 h incubation with GP.
T20264 488-740 Sentence denotes Band shifts were determined after 1 h incubation with GP as described before, including mutated oligos for NFIL-6 (TTA CAA CAG TGG ATT GCG ACA CTT AGT GGG) and NFATP2/3 (GGC GCA GAA AAG GTA AAA TAT TTA CTA TCT) binding sites within the IL-1RA promoter.
T20263 237-487 Sentence denotes 50 μg/ml of CAPE (caffeic-3,4-dihydroxycinnamic-acid-phenyl-ester), (Biomol, Hamburg, Germany); 400 ng/ml cyclosporin A (Calbiochem-Merck Biosciences, Bad Soden, Germany); 10 μg/ml cycloheximide (Santa Cruz Biotechnology) prior to incubation with GP.
T20262 36-236 Sentence denotes To inhibit translocation and binding of transcription factors to the IL-1RA promoter, PBMC were incubated for 1 h with each of the following substances (concentrations were based upon 50% inhibition):
T20261 0-35 Sentence denotes Inhibition of transcription factors
T265 0-35 Sentence denotes Inhibition of transcription factors
T266 36-236 Sentence denotes To inhibit translocation and binding of transcription factors to the IL-1RA promoter, PBMC were incubated for 1 h with each of the following substances (concentrations were based upon 50% inhibition):
T267 237-487 Sentence denotes 50 μg/ml of CAPE (caffeic-3,4-dihydroxycinnamic-acid-phenyl-ester), (Biomol, Hamburg, Germany); 400 ng/ml cyclosporin A (Calbiochem-Merck Biosciences, Bad Soden, Germany); 10 μg/ml cycloheximide (Santa Cruz Biotechnology) prior to incubation with GP.
T268 488-740 Sentence denotes Band shifts were determined after 1 h incubation with GP as described before, including mutated oligos for NFIL-6 (TTA CAA CAG TGG ATT GCG ACA CTT AGT GGG) and NFATP2/3 (GGC GCA GAA AAG GTA AAA TAT TTA CTA TCT) binding sites within the IL-1RA promoter.
T269 741-1166 Sentence denotes PBMC RNA was isolated with an RNeasy kit (Qiagen, Germany) and messenger RNA was transcribed into cDNA with Reactin Ready First Strand kit (Biomol) and analysed for IL-1RA and GAPDH transcripts by PCR with a HotStart "sweet" PCR mastermix (Biomol) (95°C, 30 sec, 55°C, 30 sec, 72°C, 30 sec, 25 cycles for IL-1RA and 94°C for 30 sec, 50°C for 30 sec and 72°C for 45 sec, 25 cycles for GAPDH) following 18 h incubation with GP.
T270 1167-1253 Sentence denotes IL-1RA protein was measured in the supernatant by ELISA after 24 h incubation with GP.

simple1

Id Subject Object Predicate Lexical cue
T20331 1167-1173 Protein denotes IL-1RA
T20330 917-922 Protein denotes GAPDH
T20329 906-912 Protein denotes IL-1RA
T20328 724-730 Protein denotes IL-1RA
T20327 655-656 Protein denotes 3
T20326 648-654 Protein denotes NFATP2
T20325 595-601 Protein denotes NFIL-6
T20324 105-111 Protein denotes IL-1RA

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20956 65-72 Binding denotes binding
T20955 39-46 Negative_regulation denotes inhibit
T20954 1167-1173 Protein denotes IL-1RA
T20953 917-922 Protein denotes GAPDH
T20952 906-912 Protein denotes IL-1RA
T20951 724-730 Protein denotes IL-1RA
T20950 655-656 Protein denotes 3
T20949 648-654 Protein denotes NFATP2
T20948 595-601 Protein denotes NFIL-6
T20947 105-111 Protein denotes IL-1RA
R14428 T20947 T20956 themeOf IL-1RA,binding
R14429 T20956 T20955 themeOf binding,inhibit

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20591 65-72 Binding denotes binding
T20590 1167-1173 Protein denotes IL-1RA
T20589 917-922 Protein denotes GAPDH
T20588 906-912 Protein denotes IL-1RA
T20587 724-730 Protein denotes IL-1RA
T20586 655-656 Protein denotes 3
T20585 648-654 Protein denotes NFATP2
T20584 595-601 Protein denotes NFIL-6
T20583 105-111 Protein denotes IL-1RA
R14139 T20583 T20591 themeOf IL-1RA,binding

DLUT931

Id Subject Object Predicate Lexical cue
T20601 699-706 Binding denotes binding
T20600 65-72 Binding denotes binding
T20599 1167-1173 Protein denotes IL-1RA
T20598 917-922 Protein denotes GAPDH
T20597 906-912 Protein denotes IL-1RA
T20596 724-730 Protein denotes IL-1RA
T20595 655-656 Protein denotes 3
T20594 648-654 Protein denotes NFATP2
T20593 595-601 Protein denotes NFIL-6
T20592 105-111 Protein denotes IL-1RA
R14140 T20592 T20600 themeOf IL-1RA,binding
R14141 T20593 T20601 themeOf NFIL-6,binding
R14142 T20593 T20601 themeOf NFIL-6,binding
R14143 T20594 T20601 themeOf NFATP2,binding
R14144 T20594 T20601 themeOf NFATP2,binding
R14145 T20595 T20601 themeOf 3,binding
R14146 T20596 T20601 themeOf IL-1RA,binding
R14147 T20596 T20601 themeOf IL-1RA,binding
R14148 T20596 T20601 themeOf IL-1RA,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20946 65-121 Binding denotes binding of transcription factors to the IL-1RA promoter,
T20945 804-833 Transcription denotes messenger RNA was transcribed
T20944 804-833 Transcription denotes messenger RNA was transcribed
T20943 741-750 Localization denotes PBMC RNA
T20942 0-35 Negative_regulation denotes Inhibition of transcription factors
T20941 1167-1181 Protein denotes IL-1RA protein
T20940 160-187 Entity denotes of the following substances
T20939 122-126 Entity denotes PBMC
T20938 707-712 Entity denotes sites
T20937 658-661 Protein denotes GGC
T20936 1142-1146 Entity denotes 18 h
T20935 1198-1252 Entity denotes the supernatant by ELISA after 24 h incubation with GP
T20934 73-97 Protein denotes of transcription factors
T20933 11-35 Protein denotes of transcription factors
T20932 658-685 Protein denotes GGC GCA GAA AAG GTA AAA TAT
T20931 741-749 Protein denotes PBMC RNA
T20930 917-922 Protein denotes GAPDH
T20929 906-957 Protein denotes IL-1RA and GAPDH transcripts by PCR with a HotStart
T20928 619-626 Protein denotes ATT GCG
T20927 409-458 Entity denotes 10 μg/ml cycloheximide (Santa Cruz Biotechnology)
T20926 655-656 Protein denotes 3
T20925 741-745 Entity denotes PBMC
T20924 542-544 Protein denotes GP
T20923 595-601 Protein denotes NFIL-6
T20922 658-685 Protein denotes GGC GCA GAA AAG GTA AAA TAT
T20921 105-111 Protein denotes IL-1RA
T20920 658-685 Entity denotes GGC GCA GAA AAG GTA AAA TAT
T20919 648-656 Protein denotes NFATP2/3
T20918 1229-1233 Entity denotes 24 h
T20917 101-121 Entity denotes the IL-1RA promoter,
T20916 949-952 Protein denotes Hot
T20915 631-642 Protein denotes CTT AGT GGG
T20914 146-187 Entity denotes 1 h with each of the following substances
T20913 804-817 Protein denotes messenger RNA
T20912 1125-1130 Protein denotes GAPDH
T20911 337-387 Entity denotes ng/ml cyclosporin A (Calbiochem-Merck Biosciences,
T20910 631-642 Entity denotes CTT AGT GGG
T20909 720-739 Entity denotes the IL-1RA promoter
T20908 906-912 Protein denotes IL-1RA
T20907 1163-1165 Protein denotes GP
T20906 522-544 Entity denotes 1 h incubation with GP
T20905 648-656 Protein denotes NFATP2/3
T20904 662-665 Protein denotes GCA
T20903 484-486 Protein denotes GP
T20902 670-673 Entity denotes AAG
T20901 155-187 Entity denotes each of the following substances
T20900 938-941 Protein denotes PCR
T20899 488-492 Entity denotes Band
T20898 724-730 Protein denotes IL-1RA
T20897 1167-1173 Protein denotes IL-1RA
T20896 1046-1052 Protein denotes IL-1RA
T20895 690-693 Entity denotes CTA
T20894 966-969 Protein denotes PCR
R14420 T20909 T20898 partOf the IL-1RA promoter,IL-1RA
R14421 T20913 T20944 themeOf messenger RNA,messenger RNA was transcribed
R14422 T20913 T20945 themeOf messenger RNA,messenger RNA was transcribed
R14423 T20917 T20921 partOf "the IL-1RA promoter,",IL-1RA
R14424 T20925 T20943 locationOf PBMC,PBMC RNA
R14425 T20931 T20943 themeOf PBMC RNA,PBMC RNA
R14426 T20933 T20942 themeOf of transcription factors,Inhibition of transcription factors
R14427 T20934 T20946 themeOf of transcription factors,"binding of transcription factors to the IL-1RA promoter,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20878 1252-1253 . denotes .
T20877 1250-1252 NNP denotes GP
T20876 1245-1249 IN denotes with
T20875 1234-1244 NN denotes incubation
T20874 1232-1233 NN denotes h
T20873 1229-1231 CD denotes 24
T20872 1223-1228 IN denotes after
T20871 1217-1222 NNP denotes ELISA
T20870 1214-1216 IN denotes by
T20869 1202-1213 JJ denotes supernatant
T20868 1198-1201 DT denotes the
T20867 1195-1197 IN denotes in
T20866 1186-1194 VBN denotes measured
T20865 1182-1185 VBD denotes was
T20864 1174-1181 NN denotes protein
T20863 1167-1173 NN denotes IL-1RA
T20862 1165-1166 . denotes .
T20861 1163-1165 NNP denotes GP
T20860 1158-1162 IN denotes with
T20859 1147-1157 NN denotes incubation
T20858 1145-1146 NN denotes h
T20857 1142-1144 CD denotes 18
T20856 1132-1141 VBG denotes following
T20855 1130-1131 -RRB- denotes )
T20854 1125-1130 NNP denotes GAPDH
T20853 1121-1124 IN denotes for
T20852 1114-1120 NNS denotes cycles
T20851 1111-1113 CD denotes 25
T20850 1109-1110 , denotes ,
T20849 1106-1109 NN denotes sec
T20848 1103-1105 CD denotes 45
T20847 1099-1102 IN denotes for
T20846 1097-1098 NNP denotes C
T20845 1096-1097 NN denotes °
T20844 1094-1096 CD denotes 72
T20843 1090-1093 CC denotes and
T20842 1086-1089 NN denotes sec
T20841 1083-1085 CD denotes 30
T20840 1079-1082 IN denotes for
T20839 1077-1078 NNP denotes C
T20838 1076-1077 NN denotes °
T20837 1074-1076 CD denotes 50
T20836 1072-1073 , denotes ,
T20835 1069-1072 NN denotes sec
T20834 1066-1068 CD denotes 30
T20833 1062-1065 IN denotes for
T20832 1060-1061 NNP denotes C
T20831 1059-1060 NN denotes °
T20830 1057-1059 CD denotes 94
T20829 1053-1056 CC denotes and
T20828 1046-1052 NN denotes IL-1RA
T20827 1042-1045 IN denotes for
T20826 1035-1041 NNS denotes cycles
T20825 1032-1034 CD denotes 25
T20824 1030-1031 , denotes ,
T20823 1027-1030 NN denotes sec
T20822 1024-1026 CD denotes 30
T20821 1022-1023 , denotes ,
T20820 1021-1022 NNP denotes C
T20819 1020-1021 NN denotes °
T20818 1018-1020 CD denotes 72
T20817 1016-1017 , denotes ,
T20816 1013-1016 NN denotes sec
T20815 1010-1012 CD denotes 30
T20814 1008-1009 , denotes ,
T20813 1007-1008 NNP denotes C
T20812 1006-1007 NN denotes °
T20811 1004-1006 CD denotes 55
T20810 1002-1003 , denotes ,
T20642 189-203 NNS denotes concentrations
T20641 188-189 -LRB- denotes (
T20640 177-187 NNS denotes substances
T20639 167-176 VBG denotes following
T20638 163-166 DT denotes the
T20637 160-162 IN denotes of
T20636 155-159 DT denotes each
T20635 150-154 IN denotes with
T20634 148-149 NN denotes h
T20633 146-147 CD denotes 1
T20632 142-145 IN denotes for
T20631 132-141 VBN denotes incubated
T20630 127-131 VBD denotes were
T20629 122-126 NNP denotes PBMC
T20628 120-121 , denotes ,
T20627 112-120 NN denotes promoter
T20626 105-111 NN denotes IL-1RA
T20625 101-104 DT denotes the
T20624 98-100 TO denotes to
T20623 90-97 NNS denotes factors
T20622 76-89 NN denotes transcription
T20621 73-75 IN denotes of
T20620 65-72 JJ denotes binding
T20619 61-64 CC denotes and
T20618 47-60 NN denotes translocation
T20617 39-46 VB denotes inhibit
T20616 36-38 TO denotes To
T20615 28-35 NNS denotes factors
T20614 14-27 NN denotes transcription
T20613 11-13 IN denotes of
T20612 0-10 NNP denotes Inhibition
T20809 999-1002 NN denotes sec
T20808 996-998 CD denotes 30
T20807 994-995 , denotes ,
T20806 993-994 NNP denotes C
T20805 992-993 NN denotes °
T20804 990-992 CD denotes 95
T20803 989-990 -LRB- denotes (
T20802 987-988 -RRB- denotes )
T20801 981-987 NNP denotes Biomol
T20800 980-981 -LRB- denotes (
T20799 970-979 NN denotes mastermix
T20798 966-969 NNP denotes PCR
T20797 964-965 '' denotes "
T20796 959-964 JJ denotes sweet
T20795 958-959 `` denotes "
T20794 949-957 NNP denotes HotStart
T20793 947-948 DT denotes a
T20792 942-946 IN denotes with
T20791 938-941 NNP denotes PCR
T20790 935-937 IN denotes by
T20789 923-934 NNS denotes transcripts
T20788 917-922 NNP denotes GAPDH
T20787 913-916 CC denotes and
T20786 906-912 NNP denotes IL-1RA
T20785 902-905 IN denotes for
T20784 893-901 VBD denotes analysed
T20783 889-892 CC denotes and
T20782 887-888 -RRB- denotes )
T20781 881-887 NNP denotes Biomol
T20780 880-881 -LRB- denotes (
T20779 876-879 NN denotes kit
T20778 869-875 NNP denotes Strand
T20777 863-868 NNP denotes First
T20776 857-862 NNP denotes Ready
T20775 849-856 NNP denotes Reactin
T20774 844-848 IN denotes with
T20773 839-843 NNP denotes cDNA
T20772 834-838 IN denotes into
T20771 822-833 VBN denotes transcribed
T20770 818-821 VBD denotes was
T20769 814-817 NNP denotes RNA
T20768 804-813 NN denotes messenger
T20767 800-803 CC denotes and
T20766 798-799 -RRB- denotes )
T20765 791-798 NNP denotes Germany
T20764 789-790 , denotes ,
T20763 783-789 NNP denotes Qiagen
T20762 782-783 -LRB- denotes (
T20761 778-781 NN denotes kit
T20760 771-777 NNP denotes RNeasy
T20759 768-770 DT denotes an
T20758 763-767 IN denotes with
T20757 754-762 VBN denotes isolated
T20756 750-753 VBD denotes was
T20755 746-749 NNP denotes RNA
T20754 741-745 NNP denotes PBMC
T20753 739-740 . denotes .
T20752 731-739 NN denotes promoter
T20751 724-730 NN denotes IL-1RA
T20750 720-723 DT denotes the
T20749 713-719 IN denotes within
T20748 707-712 NNS denotes sites
T20747 699-706 JJ denotes binding
T20746 697-698 -RRB- denotes )
T20745 694-697 NNP denotes TCT
T20744 690-693 NNP denotes CTA
T20701 486-487 . denotes .
T20700 484-486 NNP denotes GP
T20699 479-483 IN denotes with
T20698 468-478 NN denotes incubation
T20697 465-467 TO denotes to
T20696 459-464 RB denotes prior
T20695 457-458 -RRB- denotes )
T20694 444-457 NNP denotes Biotechnology
T20693 439-443 NNP denotes Cruz
T20692 433-438 NNP denotes Santa
T20691 432-433 -LRB- denotes (
T20690 418-431 NN denotes cycloheximide
T20689 415-417 NN denotes ml
T20688 414-415 NN denotes /
T20687 412-414 NN denotes μg
T20686 409-411 CD denotes 10
T20685 407-408 : denotes ;
T20684 406-407 -RRB- denotes )
T20683 399-406 NNP denotes Germany
T20682 397-398 , denotes ,
T20681 392-397 NNP denotes Soden
T20680 388-391 NNP denotes Bad
T20679 386-387 , denotes ,
T20678 375-386 NNP denotes Biosciences
T20677 358-374 NNP denotes Calbiochem-Merck
T20676 357-358 -LRB- denotes (
T20675 355-356 DT denotes A
T20674 343-354 NN denotes cyclosporin
T20673 337-342 JJ denotes ng/ml
T20672 333-336 CD denotes 400
T20671 331-332 : denotes ;
T20670 330-331 -RRB- denotes )
T20669 323-330 NNP denotes Germany
T20668 321-322 , denotes ,
T20667 314-321 NNP denotes Hamburg
T20666 312-313 , denotes ,
T20665 306-312 NNP denotes Biomol
T20664 305-306 -LRB- denotes (
T20663 303-304 , denotes ,
T20662 302-303 -RRB- denotes )
T20661 267-302 NN denotes dihydroxycinnamic-acid-phenyl-ester
T20660 266-267 : denotes -
T20659 264-266 SYM denotes ,4
T20658 255-264 JJ denotes caffeic-3
T20657 254-255 -LRB- denotes (
T20656 249-253 NNP denotes CAPE
T20655 246-248 IN denotes of
T20654 243-245 NN denotes ml
T20653 242-243 NN denotes /
T20652 240-242 NN denotes μg
T20651 237-239 CD denotes 50
T20650 235-236 : denotes :
T20649 234-235 -RRB- denotes )
T20648 224-234 NN denotes inhibition
T20647 222-223 NN denotes %
T20646 220-222 CD denotes 50
T20645 215-219 IN denotes upon
T20644 209-214 VBN denotes based
T20643 204-208 VBD denotes were
T20724 611-614 NNP denotes CAG
T20723 607-610 NNP denotes CAA
T20722 603-606 NNP denotes TTA
T20721 602-603 -LRB- denotes (
T20720 595-601 NNP denotes NFIL-6
T20719 591-594 IN denotes for
T20718 584-590 NNS denotes oligos
T20717 576-583 VBN denotes mutated
T20716 566-575 VBG denotes including
T20715 564-565 , denotes ,
T20714 558-564 RB denotes before
T20713 548-557 VBN denotes described
T20712 545-547 IN denotes as
T20711 542-544 NNP denotes GP
T20710 537-541 IN denotes with
T20709 526-536 NN denotes incubation
T20708 524-525 NN denotes h
T20707 522-523 CD denotes 1
T20706 516-521 IN denotes after
T20705 505-515 VBN denotes determined
T20704 500-504 VBD denotes were
T20703 493-499 NNS denotes shifts
T20702 488-492 NNP denotes Band
T20743 686-689 NNP denotes TTA
T20742 682-685 NNP denotes TAT
T20741 678-681 NNP denotes AAA
T20740 674-677 NNP denotes GTA
T20739 670-673 NNP denotes AAG
T20738 666-669 NNP denotes GAA
T20737 662-665 NNP denotes GCA
T20736 658-661 NNP denotes GGC
T20735 657-658 -LRB- denotes (
T20734 648-656 NNP denotes NFATP2/3
T20733 644-647 CC denotes and
T20732 642-643 -RRB- denotes )
T20731 639-642 NNP denotes GGG
T20730 635-638 NNP denotes AGT
T20729 631-634 NNP denotes CTT
T20728 627-630 NNP denotes ACA
T20727 623-626 NNP denotes GCG
T20726 619-622 NNP denotes ATT
T20725 615-618 NNP denotes TGG
R14153 T20612 T20631 nsubjpass Inhibition,incubated
R14154 T20613 T20612 prep of,Inhibition
R14155 T20614 T20615 compound transcription,factors
R14156 T20615 T20613 pobj factors,of
R14157 T20616 T20617 aux To,inhibit
R14158 T20617 T20631 advcl inhibit,incubated
R14159 T20618 T20617 dobj translocation,inhibit
R14160 T20619 T20618 cc and,translocation
R14161 T20620 T20618 conj binding,translocation
R14162 T20621 T20620 prep of,binding
R14163 T20622 T20623 compound transcription,factors
R14164 T20623 T20621 pobj factors,of
R14165 T20624 T20617 prep to,inhibit
R14166 T20625 T20627 det the,promoter
R14167 T20626 T20627 compound IL-1RA,promoter
R14168 T20627 T20624 pobj promoter,to
R14169 T20628 T20631 punct ",",incubated
R14170 T20629 T20631 nsubjpass PBMC,incubated
R14171 T20630 T20631 auxpass were,incubated
R14172 T20631 T20631 ROOT incubated,incubated
R14173 T20632 T20631 prep for,incubated
R14174 T20633 T20634 nummod 1,h
R14175 T20634 T20632 pobj h,for
R14176 T20635 T20634 prep with,h
R14177 T20636 T20635 pobj each,with
R14178 T20637 T20636 prep of,each
R14179 T20638 T20640 det the,substances
R14180 T20639 T20640 amod following,substances
R14181 T20640 T20637 pobj substances,of
R14182 T20641 T20644 punct (,based
R14183 T20642 T20644 nsubjpass concentrations,based
R14184 T20643 T20644 auxpass were,based
R14185 T20644 T20631 conj based,incubated
R14186 T20645 T20644 prep upon,based
R14187 T20646 T20647 nummod 50,%
R14188 T20647 T20648 compound %,inhibition
R14189 T20648 T20645 pobj inhibition,upon
R14190 T20649 T20644 punct ),based
R14191 T20650 T20654 punct :,ml
R14192 T20651 T20652 nummod 50,μg
R14193 T20652 T20654 compound μg,ml
R14194 T20653 T20654 compound /,ml
R14195 T20654 T20654 ROOT ml,ml
R14196 T20655 T20654 prep of,ml
R14197 T20656 T20655 pobj CAPE,of
R14198 T20657 T20658 punct (,caffeic-3
R14199 T20658 T20654 dep caffeic-3,ml
R14200 T20659 T20661 punct ",4",dihydroxycinnamic-acid-phenyl-ester
R14201 T20660 T20661 punct -,dihydroxycinnamic-acid-phenyl-ester
R14202 T20661 T20658 appos dihydroxycinnamic-acid-phenyl-ester,caffeic-3
R14203 T20662 T20661 punct ),dihydroxycinnamic-acid-phenyl-ester
R14204 T20663 T20658 punct ",",caffeic-3
R14205 T20664 T20665 punct (,Biomol
R14206 T20665 T20658 appos Biomol,caffeic-3
R14207 T20666 T20665 punct ",",Biomol
R14208 T20667 T20665 npadvmod Hamburg,Biomol
R14209 T20668 T20667 punct ",",Hamburg
R14210 T20669 T20667 appos Germany,Hamburg
R14211 T20670 T20667 punct ),Hamburg
R14212 T20671 T20665 punct ;,Biomol
R14213 T20672 T20674 nummod 400,cyclosporin
R14214 T20673 T20674 compound ng/ml,cyclosporin
R14215 T20674 T20675 compound cyclosporin,A
R14216 T20675 T20678 det A,Biosciences
R14217 T20676 T20678 punct (,Biosciences
R14218 T20677 T20678 compound Calbiochem-Merck,Biosciences
R14219 T20678 T20658 appos Biosciences,caffeic-3
R14220 T20679 T20678 punct ",",Biosciences
R14221 T20680 T20681 compound Bad,Soden
R14222 T20681 T20678 conj Soden,Biosciences
R14223 T20682 T20681 punct ",",Soden
R14224 T20683 T20681 conj Germany,Soden
R14225 T20684 T20681 punct ),Soden
R14226 T20685 T20678 punct ;,Biosciences
R14227 T20686 T20687 nummod 10,μg
R14228 T20687 T20690 nmod μg,cycloheximide
R14229 T20688 T20690 nmod /,cycloheximide
R14230 T20689 T20690 compound ml,cycloheximide
R14231 T20690 T20678 conj cycloheximide,Biosciences
R14232 T20691 T20694 punct (,Biotechnology
R14233 T20692 T20693 compound Santa,Cruz
R14234 T20693 T20694 compound Cruz,Biotechnology
R14235 T20694 T20690 appos Biotechnology,cycloheximide
R14236 T20695 T20690 punct ),cycloheximide
R14237 T20696 T20699 advmod prior,with
R14238 T20697 T20696 prep to,prior
R14239 T20698 T20697 pobj incubation,to
R14240 T20699 T20658 prep with,caffeic-3
R14241 T20700 T20699 pobj GP,with
R14242 T20701 T20658 punct .,caffeic-3
R14243 T20702 T20703 compound Band,shifts
R14244 T20703 T20705 nsubjpass shifts,determined
R14245 T20704 T20705 auxpass were,determined
R14246 T20705 T20705 ROOT determined,determined
R14247 T20706 T20705 prep after,determined
R14248 T20707 T20709 nummod 1,incubation
R14249 T20708 T20709 compound h,incubation
R14250 T20709 T20706 pobj incubation,after
R14251 T20710 T20709 prep with,incubation
R14252 T20711 T20710 pobj GP,with
R14253 T20712 T20713 mark as,described
R14254 T20713 T20709 advcl described,incubation
R14255 T20714 T20713 advmod before,described
R14256 T20715 T20709 punct ",",incubation
R14257 T20716 T20709 prep including,incubation
R14258 T20717 T20718 amod mutated,oligos
R14259 T20718 T20716 pobj oligos,including
R14260 T20719 T20718 prep for,oligos
R14261 T20720 T20719 pobj NFIL-6,for
R14262 T20721 T20731 punct (,GGG
R14263 T20722 T20727 compound TTA,GCG
R14264 T20723 T20727 compound CAA,GCG
R14265 T20724 T20727 compound CAG,GCG
R14266 T20725 T20727 compound TGG,GCG
R14267 T20726 T20727 compound ATT,GCG
R14268 T20727 T20731 compound GCG,GGG
R14269 T20728 T20729 compound ACA,CTT
R14270 T20729 T20731 compound CTT,GGG
R14271 T20730 T20731 compound AGT,GGG
R14272 T20731 T20720 appos GGG,NFIL-6
R14273 T20732 T20731 punct ),GGG
R14274 T20733 T20720 cc and,NFIL-6
R14275 T20734 T20745 compound NFATP2/3,TCT
R14276 T20735 T20740 punct (,GTA
R14277 T20736 T20740 compound GGC,GTA
R14278 T20737 T20740 compound GCA,GTA
R14279 T20738 T20740 compound GAA,GTA
R14280 T20739 T20740 compound AAG,GTA
R14281 T20740 T20745 compound GTA,TCT
R14282 T20741 T20745 compound AAA,TCT
R14283 T20742 T20745 compound TAT,TCT
R14284 T20743 T20745 compound TTA,TCT
R14285 T20744 T20745 compound CTA,TCT
R14286 T20745 T20720 conj TCT,NFIL-6
R14287 T20746 T20718 punct ),oligos
R14288 T20747 T20748 amod binding,sites
R14289 T20748 T20716 pobj sites,including
R14290 T20749 T20748 prep within,sites
R14291 T20750 T20752 det the,promoter
R14292 T20751 T20752 compound IL-1RA,promoter
R14293 T20752 T20749 pobj promoter,within
R14294 T20753 T20705 punct .,determined
R14295 T20754 T20755 compound PBMC,RNA
R14296 T20755 T20756 nsubj RNA,was
R14297 T20756 T20756 ROOT was,was
R14298 T20757 T20756 acomp isolated,was
R14299 T20758 T20757 prep with,isolated
R14300 T20759 T20761 det an,kit
R14301 T20760 T20761 compound RNeasy,kit
R14302 T20761 T20758 pobj kit,with
R14303 T20762 T20761 punct (,kit
R14304 T20763 T20761 appos Qiagen,kit
R14305 T20764 T20763 punct ",",Qiagen
R14306 T20765 T20763 appos Germany,Qiagen
R14307 T20766 T20765 punct ),Germany
R14308 T20767 T20761 cc and,kit
R14309 T20768 T20769 compound messenger,RNA
R14310 T20769 T20771 nsubjpass RNA,transcribed
R14311 T20770 T20771 auxpass was,transcribed
R14312 T20771 T20756 conj transcribed,was
R14313 T20772 T20771 prep into,transcribed
R14314 T20773 T20772 pobj cDNA,into
R14315 T20774 T20771 prep with,transcribed
R14316 T20775 T20778 compound Reactin,Strand
R14317 T20776 T20778 compound Ready,Strand
R14318 T20777 T20778 compound First,Strand
R14319 T20778 T20779 compound Strand,kit
R14320 T20779 T20774 pobj kit,with
R14321 T20780 T20779 punct (,kit
R14322 T20781 T20779 appos Biomol,kit
R14323 T20782 T20779 punct ),kit
R14324 T20783 T20771 cc and,transcribed
R14325 T20784 T20771 conj analysed,transcribed
R14326 T20785 T20784 prep for,analysed
R14327 T20786 T20785 pobj IL-1RA,for
R14328 T20787 T20786 cc and,IL-1RA
R14329 T20788 T20786 conj GAPDH,IL-1RA
R14330 T20789 T20785 pobj transcripts,for
R14331 T20790 T20789 prep by,transcripts
R14332 T20791 T20790 pobj PCR,by
R14333 T20792 T20784 prep with,analysed
R14334 T20793 T20794 det a,HotStart
R14335 T20794 T20799 nmod HotStart,mastermix
R14336 T20795 T20799 punct """",mastermix
R14337 T20796 T20799 amod sweet,mastermix
R14338 T20797 T20799 punct """",mastermix
R14339 T20798 T20799 compound PCR,mastermix
R14340 T20799 T20856 nsubj mastermix,following
R14341 T20800 T20799 punct (,mastermix
R14342 T20801 T20799 appos Biomol,mastermix
R14343 T20802 T20799 punct ),mastermix
R14344 T20803 T20806 punct (,C
R14345 T20804 T20805 nummod 95,°
R14346 T20805 T20806 compound °,C
R14347 T20806 T20799 appos C,mastermix
R14348 T20807 T20813 punct ",",C
R14349 T20808 T20809 nummod 30,sec
R14350 T20809 T20813 npadvmod sec,C
R14351 T20810 T20813 punct ",",C
R14352 T20811 T20813 nummod 55,C
R14353 T20812 T20813 compound °,C
R14354 T20813 T20799 conj C,mastermix
R14355 T20814 T20813 punct ",",C
R14356 T20815 T20816 nummod 30,sec
R14357 T20816 T20813 appos sec,C
R14358 T20817 T20816 punct ",",sec
R14359 T20818 T20820 nummod 72,C
R14360 T20819 T20820 compound °,C
R14361 T20820 T20813 conj C,C
R14362 T20821 T20820 punct ",",C
R14363 T20822 T20823 nummod 30,sec
R14364 T20823 T20856 nsubj sec,following
R14365 T20824 T20823 punct ",",sec
R14366 T20825 T20826 nummod 25,cycles
R14367 T20826 T20823 conj cycles,sec
R14368 T20827 T20826 prep for,cycles
R14369 T20828 T20827 pobj IL-1RA,for
R14370 T20829 T20828 cc and,IL-1RA
R14371 T20830 T20831 nummod 94,°
R14372 T20831 T20832 compound °,C
R14373 T20832 T20828 conj C,IL-1RA
R14374 T20833 T20832 prep for,C
R14375 T20834 T20835 nummod 30,sec
R14376 T20835 T20833 pobj sec,for
R14377 T20836 T20835 punct ",",sec
R14378 T20837 T20838 nummod 50,°
R14379 T20838 T20839 compound °,C
R14380 T20839 T20832 conj C,C
R14381 T20840 T20823 prep for,sec
R14382 T20841 T20856 nummod 30,following
R14383 T20842 T20856 nsubj sec,following
R14384 T20843 T20842 cc and,sec
R14385 T20844 T20845 nummod 72,°
R14386 T20845 T20846 compound °,C
R14387 T20846 T20842 conj C,sec
R14388 T20847 T20846 prep for,C
R14389 T20848 T20849 nummod 45,sec
R14390 T20849 T20847 pobj sec,for
R14391 T20850 T20849 punct ",",sec
R14392 T20851 T20852 nummod 25,cycles
R14393 T20852 T20849 appos cycles,sec
R14394 T20853 T20852 prep for,cycles
R14395 T20854 T20853 pobj GAPDH,for
R14396 T20855 T20852 punct ),cycles
R14397 T20856 T20771 conj following,transcribed
R14398 T20857 T20858 nummod 18,h
R14399 T20858 T20859 compound h,incubation
R14400 T20859 T20856 pobj incubation,following
R14401 T20860 T20859 prep with,incubation
R14402 T20861 T20860 pobj GP,with
R14403 T20862 T20771 punct .,transcribed
R14404 T20863 T20864 compound IL-1RA,protein
R14405 T20864 T20866 nsubjpass protein,measured
R14406 T20865 T20866 auxpass was,measured
R14407 T20866 T20866 ROOT measured,measured
R14408 T20867 T20866 prep in,measured
R14409 T20868 T20869 det the,supernatant
R14410 T20869 T20867 pobj supernatant,in
R14411 T20870 T20866 agent by,measured
R14412 T20871 T20870 pobj ELISA,by
R14413 T20872 T20866 prep after,measured
R14414 T20873 T20875 nummod 24,incubation
R14415 T20874 T20875 compound h,incubation
R14416 T20875 T20872 pobj incubation,after
R14417 T20876 T20875 prep with,incubation
R14418 T20877 T20876 pobj GP,with
R14419 T20878 T20866 punct .,measured

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20315 1167-1181 Protein denotes IL-1RA protein
T20314 1125-1130 Protein denotes GAPDH
T20313 1046-1052 Protein denotes IL-1RA
T20312 917-934 Protein denotes GAPDH transcripts
T20311 906-912 Protein denotes IL-1RA
T20310 849-856 Protein denotes Reactin
T20309 724-739 Protein denotes IL-1RA promoter
T20308 690-697 Protein denotes CTA TCT
T20307 670-689 Protein denotes AAG GTA AAA TAT TTA
T20306 658-665 Protein denotes GGC GCA
T20305 648-656 Protein denotes NFATP2/3
T20304 635-642 Protein denotes AGT GGG
T20303 619-634 Protein denotes ATT GCG ACA CTT
T20302 603-618 Protein denotes TTA CAA CAG TGG
T20301 595-601 Protein denotes NFIL-6

testone

Id Subject Object Predicate Lexical cue
T20241 112-120 Entity denotes promoter
T20240 65-72 Binding denotes binding
T20239 1167-1173 Protein denotes IL-1RA
T20238 917-922 Protein denotes GAPDH
T20237 906-912 Protein denotes IL-1RA
T20236 724-730 Protein denotes IL-1RA
T20235 655-656 Protein denotes 3
T20234 648-654 Protein denotes NFATP2
T20233 595-601 Protein denotes NFIL-6
T20232 105-111 Protein denotes IL-1RA
R13881 T20241 T20232 partOf promoter,IL-1RA
R13882 T20241 T20240 themeOf promoter,binding

test3

Id Subject Object Predicate Lexical cue
T20260 1167-1173 Protein denotes IL-1RA
T20259 923-934 Transcription denotes transcripts
T20258 917-922 Protein denotes GAPDH
T20257 906-912 Protein denotes IL-1RA
T20256 724-730 Protein denotes IL-1RA
T20255 655-656 Protein denotes 3
T20254 648-654 Protein denotes NFATP2
T20253 595-601 Protein denotes NFIL-6
T20252 105-111 Protein denotes IL-1RA
T20251 65-72 Binding denotes binding
T20250 39-46 Negative_regulation denotes inhibit
T20249 1167-1173 Protein denotes IL-1RA
T20248 917-922 Protein denotes GAPDH
T20247 906-912 Protein denotes IL-1RA
T20246 724-730 Protein denotes IL-1RA
T20245 655-656 Protein denotes 3
T20244 648-654 Protein denotes NFATP2
T20243 595-601 Protein denotes NFIL-6
T20242 105-111 Protein denotes IL-1RA
R13883 T20251 T20250 themeOf binding,inhibit
R13884 T20257 T20259 themeOf IL-1RA,transcripts
R13885 T20258 T20259 themeOf GAPDH,transcripts