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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18963 866-873 NN denotes binding
T18962 857-865 JJ denotes specific
T18961 852-856 IN denotes with
T18960 844-851 VB denotes compete
T18959 840-843 RB denotes not
T18958 836-839 VB denotes did
T18957 830-835 WDT denotes which
T18956 828-829 -COMMA- denotes ,
T18955 824-828 VB denotes used
T18954 820-823 VB denotes was
T18953 818-819 -RRB- denotes )
T18952 817-818 CD denotes 1
T18951 811-816 JJ denotes Table
T18950 809-810 -COMMA- denotes ,
T18949 806-809 NN denotes DNA
T18948 796-805 JJ denotes unrelated
T18947 795-796 -LRB- denotes (
T18946 791-794 NN denotes DNA
T18945 785-790 NN denotes Oct-1
T18944 782-784 IN denotes of
T18943 775-781 NN denotes excess
T18942 769-774 JJ denotes molar
T18941 761-768 JJ denotes 30-fold
T18940 759-760 DT denotes a
T18939 757-758 -COMMA- denotes ,
T18938 748-757 NN denotes reactions
T18937 735-747 JJ denotes non-specific
T18936 727-734 VB denotes exclude
T18935 724-726 TO denotes To
T18934 721-722 -RRB- denotes )
T18933 716-721 VB denotes shown
T18932 712-715 RB denotes not
T18931 707-711 NN denotes data
T18930 706-707 -LRB- denotes (
T18929 696-705 VB denotes performed
T18928 691-695 VB denotes were
T18927 682-690 NN denotes antibody
T18926 675-681 NN denotes p65/50
T18925 666-674 JJ denotes combined
T18924 664-665 DT denotes a
T18923 659-663 IN denotes with
T18922 654-658 NN denotes NFκB
T18921 650-653 IN denotes for
T18920 643-649 NN denotes assays
T18919 632-642 NN denotes supershift
T18918 630-631 -COMMA- denotes ,
T18917 623-630 NN denotes binding
T18916 620-622 IN denotes of
T18915 608-619 NN denotes specificity
T18914 604-607 IN denotes For
T18913 594-602 NN denotes extracts
T18912 586-593 JJ denotes nuclear
T18911 582-585 DT denotes the
T18910 579-581 TO denotes to
T18909 573-578 VB denotes added
T18908 569-572 VB denotes was
T18907 562-568 NN denotes oligos
T18906 552-561 JJ denotes unlabeled
T18905 549-551 IN denotes of
T18904 547-548 -RRB- denotes )
T18903 542-547 NN denotes 5–50×
T18902 541-542 -LRB- denotes (
T18901 534-540 JJ denotes excess
T18900 531-533 DT denotes an
T18899 529-530 -COMMA- denotes ,
T18898 518-529 NN denotes experiments
T18897 513-517 JJ denotes such
T18896 509-512 IN denotes For
T18895 499-507 NN denotes proteins
T18894 491-498 JJ denotes nuclear
T18893 488-490 TO denotes to
T18892 480-487 NN denotes binding
T18891 467-479 JJ denotes non-specific
T18890 459-466 VB denotes prevent
T18889 456-458 TO denotes to
T18888 450-455 NN denotes order
T18887 447-449 IN denotes in
T18886 443-446 RP denotes out
T18885 435-442 VB denotes carried
T18884 430-434 VB denotes were
T18883 428-429 -RRB- denotes )
T18882 423-428 IN denotes above
T18881 419-422 VB denotes see
T18880 418-419 -LRB- denotes (
T18879 412-417 NN denotes sites
T18878 404-411 NN denotes binding
T18877 395-403 NN denotes promoter
T18876 386-394 NN denotes cytokine
T18875 382-385 DT denotes the
T18874 379-381 IN denotes of
T18873 372-378 NN denotes oligos
T18872 364-371 VB denotes mutated
T18871 354-363 JJ denotes unlabeled
T18870 350-353 CC denotes and
T18869 342-349 VB denotes labeled
T18868 337-341 IN denotes with
T18867 325-336 NN denotes experiments
T18866 313-324 NN denotes Competition
T18865 303-311 NN denotes controls
T18864 290-302 JJ denotes unstimulated
T18863 287-289 IN denotes of
T18862 281-286 NN denotes bands
T18861 278-280 TO denotes to
T18860 267-277 VB denotes normalized
T18859 263-266 VB denotes was
T18858 257-262 NN denotes bands
T18857 249-256 VB denotes shifted
T18856 246-248 IN denotes of
T18855 236-245 NN denotes intensity
T18854 232-235 DT denotes The
T18853 229-230 -RRB- denotes ]
T18852 227-229 CD denotes 56
T18814 0-11 NN denotes Preparation
T18851 226-227 -LRB- denotes [
T18850 220-225 NN denotes setup
T18849 207-219 JJ denotes experimental
T18848 203-206 PRP-DOLLAR- denotes our
T18847 199-202 IN denotes for
T18846 190-198 VB denotes modified
T18845 186-189 CC denotes and
T18844 184-185 -RRB- denotes ]
T18843 182-184 CD denotes 27
T18842 181-182 -LRB- denotes [
T18841 177-180 FW denotes al.
T18840 174-176 FW denotes et
T18839 168-173 NNP denotes Trede
T18838 165-167 IN denotes by
T18837 155-164 VB denotes described
T18836 145-154 NN denotes technique
T18835 143-144 DT denotes a
T18834 140-142 TO denotes to
T18833 130-139 VB denotes according
T18832 121-129 VB denotes prepared
T18831 116-120 VB denotes were
T18830 110-115 NN denotes PBMCs
T18829 101-109 VB denotes purified
T18828 98-100 IN denotes of
T18827 89-97 NN denotes extracts
T18826 81-88 JJ denotes Nuclear
T18825 79-80 -RRB- denotes )
T18824 75-79 NN denotes EMSA
T18823 74-75 -LRB- denotes (
T18822 67-73 NN denotes assays
T18821 61-66 NN denotes shift
T18820 52-60 NN denotes mobility
T18819 36-51 JJ denotes electrophoretic
T18818 32-35 CC denotes and
T18817 23-31 NN denotes extracts
T18816 15-22 JJ denotes nuclear
T18815 12-14 IN denotes of
R12866 T18814 T18815 arg1Of Preparation,of
R12867 T18817 T18816 arg1Of extracts,nuclear
R12868 T18817 T18818 arg1Of extracts,and
R12869 T18818 T18815 arg2Of and,of
R12870 T18822 T18818 arg2Of assays,and
R12871 T18822 T18819 arg1Of assays,electrophoretic
R12872 T18822 T18820 arg1Of assays,mobility
R12873 T18822 T18821 arg1Of assays,shift
R12874 T18822 T18823 arg1Of assays,(
R12875 T18824 T18823 arg2Of EMSA,(
R12876 T18825 T18823 arg3Of ),(
R12877 T18827 T18826 arg1Of extracts,Nuclear
R12878 T18827 T18828 arg1Of extracts,of
R12879 T18827 T18831 arg1Of extracts,were
R12880 T18827 T18832 arg2Of extracts,prepared
R12881 T18830 T18828 arg2Of PBMCs,of
R12882 T18830 T18829 arg2Of PBMCs,purified
R12883 T18832 T18831 arg2Of prepared,were
R12884 T18832 T18833 arg1Of prepared,according
R12885 T18834 T18833 arg2Of to,according
R12886 T18836 T18834 arg2Of technique,to
R12887 T18836 T18835 arg1Of technique,a
R12888 T18836 T18837 arg2Of technique,described
R12889 T18836 T18846 arg2Of technique,modified
R12890 T18837 T18842 arg1Of described,[
R12891 T18837 T18845 arg1Of described,and
R12892 T18839 T18837 arg1Of Trede,described
R12893 T18839 T18838 arg2Of Trede,by
R12894 T18839 T18841 arg1Of Trede,al.
R12895 T18841 T18840 arg1Of al.,et
R12896 T18843 T18842 arg2Of 27,[
R12897 T18844 T18842 arg3Of ],[
R12898 T18846 T18845 arg2Of modified,and
R12899 T18846 T18847 arg1Of modified,for
R12900 T18850 T18847 arg2Of setup,for
R12901 T18850 T18848 arg1Of setup,our
R12902 T18850 T18849 arg1Of setup,experimental
R12903 T18850 T18851 arg1Of setup,[
R12904 T18852 T18851 arg2Of 56,[
R12905 T18853 T18851 arg3Of ],[
R12906 T18855 T18854 arg1Of intensity,The
R12907 T18855 T18856 arg1Of intensity,of
R12908 T18855 T18859 arg1Of intensity,was
R12909 T18855 T18860 arg2Of intensity,normalized
R12910 T18858 T18856 arg2Of bands,of
R12911 T18858 T18857 arg2Of bands,shifted
R12912 T18860 T18859 arg2Of normalized,was
R12913 T18860 T18861 arg1Of normalized,to
R12914 T18862 T18861 arg2Of bands,to
R12915 T18862 T18863 arg1Of bands,of
R12916 T18865 T18863 arg2Of controls,of
R12917 T18865 T18864 arg1Of controls,unstimulated
R12918 T18867 T18866 arg1Of experiments,Competition
R12919 T18867 T18868 arg1Of experiments,with
R12920 T18867 T18869 arg2Of experiments,labeled
R12921 T18867 T18884 arg1Of experiments,were
R12922 T18867 T18885 arg2Of experiments,carried
R12923 T18867 T18890 arg1Of experiments,prevent
R12924 T18869 T18880 arg1Of labeled,(
R12925 T18873 T18869 arg3Of oligos,labeled
R12926 T18873 T18870 arg1Of oligos,and
R12927 T18873 T18871 arg1Of oligos,unlabeled
R12928 T18873 T18872 arg2Of oligos,mutated
R12929 T18873 T18874 arg1Of oligos,of
R12930 T18879 T18874 arg2Of sites,of
R12931 T18879 T18875 arg1Of sites,the
R12932 T18879 T18876 arg1Of sites,cytokine
R12933 T18879 T18877 arg1Of sites,promoter
R12934 T18879 T18878 arg1Of sites,binding
R12935 T18881 T18880 arg2Of see,(
R12936 T18881 T18882 arg1Of see,above
R12937 T18883 T18880 arg3Of ),(
R12938 T18885 T18884 arg2Of carried,were
R12939 T18885 T18886 arg1Of carried,out
R12940 T18885 T18887 arg1Of carried,in
R12941 T18888 T18887 arg2Of order,in
R12942 T18890 T18887 arg3Of prevent,in
R12943 T18890 T18889 arg1Of prevent,to
R12944 T18892 T18890 arg2Of binding,prevent
R12945 T18892 T18891 arg1Of binding,non-specific
R12946 T18892 T18893 arg1Of binding,to
R12947 T18895 T18893 arg2Of proteins,to
R12948 T18895 T18894 arg1Of proteins,nuclear
R12949 T18898 T18896 arg2Of experiments,For
R12950 T18898 T18897 arg1Of experiments,such
R12951 T18903 T18900 arg1Of 5–50×,an
R12952 T18903 T18901 arg1Of 5–50×,excess
R12953 T18903 T18902 arg2Of 5–50×,(
R12954 T18903 T18905 arg1Of 5–50×,of
R12955 T18903 T18908 arg1Of 5–50×,was
R12956 T18903 T18909 arg2Of 5–50×,added
R12957 T18904 T18902 arg3Of ),(
R12958 T18907 T18905 arg2Of oligos,of
R12959 T18907 T18906 arg1Of oligos,unlabeled
R12960 T18909 T18896 arg1Of added,For
R12961 T18909 T18899 arg1Of added,","
R12962 T18909 T18908 arg2Of added,was
R12963 T18909 T18910 arg1Of added,to
R12964 T18913 T18910 arg2Of extracts,to
R12965 T18913 T18911 arg1Of extracts,the
R12966 T18913 T18912 arg1Of extracts,nuclear
R12967 T18915 T18914 arg2Of specificity,For
R12968 T18915 T18916 arg1Of specificity,of
R12969 T18917 T18916 arg2Of binding,of
R12970 T18920 T18919 arg1Of assays,supershift
R12971 T18920 T18921 arg1Of assays,for
R12972 T18920 T18928 arg1Of assays,were
R12973 T18920 T18929 arg2Of assays,performed
R12974 T18922 T18921 arg2Of NFκB,for
R12975 T18922 T18923 arg1Of NFκB,with
R12976 T18927 T18923 arg2Of antibody,with
R12977 T18927 T18924 arg1Of antibody,a
R12978 T18927 T18925 arg1Of antibody,combined
R12979 T18927 T18926 arg1Of antibody,p65/50
R12980 T18929 T18914 arg1Of performed,For
R12981 T18929 T18918 arg1Of performed,","
R12982 T18929 T18928 arg2Of performed,were
R12983 T18929 T18930 arg1Of performed,(
R12984 T18931 T18930 arg2Of data,(
R12985 T18931 T18933 arg2Of data,shown
R12986 T18933 T18932 arg1Of shown,not
R12987 T18934 T18930 arg3Of ),(
R12988 T18936 T18935 arg1Of exclude,To
R12989 T18938 T18936 arg2Of reactions,exclude
R12990 T18938 T18937 arg1Of reactions,non-specific
R12991 T18943 T18936 arg1Of excess,exclude
R12992 T18943 T18940 arg1Of excess,a
R12993 T18943 T18941 arg1Of excess,30-fold
R12994 T18943 T18942 arg1Of excess,molar
R12995 T18943 T18944 arg1Of excess,of
R12996 T18943 T18947 arg1Of excess,(
R12997 T18943 T18954 arg1Of excess,was
R12998 T18943 T18955 arg2Of excess,used
R12999 T18946 T18944 arg2Of DNA,of
R13000 T18946 T18945 arg1Of DNA,Oct-1
R13001 T18949 T18947 arg2Of DNA,(
R13002 T18949 T18948 arg1Of DNA,unrelated
R13003 T18949 T18950 arg1Of DNA,","
R13004 T18949 T18951 arg1Of DNA,Table
R13005 T18951 T18952 arg1Of Table,1
R13006 T18953 T18947 arg3Of ),(
R13007 T18955 T18935 modOf used,To
R13008 T18955 T18939 arg1Of used,","
R13009 T18955 T18954 arg2Of used,was
R13010 T18955 T18956 arg1Of used,","
R13011 T18955 T18957 arg1Of used,which
R13012 T18955 T18958 arg1Of used,did
R13013 T18955 T18960 arg1Of used,compete
R13014 T18960 T18958 arg2Of compete,did
R13015 T18960 T18959 arg1Of compete,not
R13016 T18960 T18961 arg1Of compete,with
R13017 T18963 T18961 arg2Of binding,with
R13018 T18963 T18962 arg1Of binding,specific

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18800 785-790 Protein denotes Oct-1
T18799 679-681 Protein denotes 50
T18798 675-678 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18965 675-678 http://www.uniprot.org/uniprot/P21579 denotes p65
T18964 675-678 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-MF

Id Subject Object Predicate Lexical cue
T18805 682-690 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T18804 866-873 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T18803 623-630 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T18802 480-487 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T18801 404-411 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T18807 682-690 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T18806 682-690 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T18794 724-874 Sentence denotes To exclude non-specific reactions, a 30-fold molar excess of Oct-1 DNA (unrelated DNA, Table 1) was used, which did not compete with specific binding.
T18793 604-723 Sentence denotes For specificity of binding, supershift assays for NFκB with a combined p65/50 antibody were performed (data not shown).
T18792 509-603 Sentence denotes For such experiments, an excess (5–50×) of unlabeled oligos was added to the nuclear extracts.
T18791 313-508 Sentence denotes Competition experiments with labeled and unlabeled mutated oligos of the cytokine promoter binding sites (see above) were carried out in order to prevent non-specific binding to nuclear proteins.
T18790 232-312 Sentence denotes The intensity of shifted bands was normalized to bands of unstimulated controls.
T18789 81-231 Sentence denotes Nuclear extracts of purified PBMCs were prepared according to a technique described by Trede et al. [27] and modified for our experimental setup [56].
T18788 0-80 Sentence denotes Preparation of nuclear extracts and electrophoretic mobility shift assays (EMSA)
T244 0-80 Sentence denotes Preparation of nuclear extracts and electrophoretic mobility shift assays (EMSA)
T245 81-231 Sentence denotes Nuclear extracts of purified PBMCs were prepared according to a technique described by Trede et al. [27] and modified for our experimental setup [56].
T246 232-312 Sentence denotes The intensity of shifted bands was normalized to bands of unstimulated controls.
T247 313-508 Sentence denotes Competition experiments with labeled and unlabeled mutated oligos of the cytokine promoter binding sites (see above) were carried out in order to prevent non-specific binding to nuclear proteins.
T248 509-603 Sentence denotes For such experiments, an excess (5–50×) of unlabeled oligos was added to the nuclear extracts.
T249 604-723 Sentence denotes For specificity of binding, supershift assays for NFκB with a combined p65/50 antibody were performed (data not shown).
T250 724-874 Sentence denotes To exclude non-specific reactions, a 30-fold molar excess of Oct-1 DNA (unrelated DNA, Table 1) was used, which did not compete with specific binding.

simple1

Id Subject Object Predicate Lexical cue
T18813 785-790 Protein denotes Oct-1
T18812 679-681 Protein denotes 50
T18811 675-678 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19164 775-781 Negative_regulation denotes excess
T19163 785-790 Protein denotes Oct-1
T19162 679-681 Protein denotes 50
T19161 675-678 Protein denotes p65
R13183 T19163 T19164 themeOf Oct-1,excess

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18968 785-790 Protein denotes Oct-1
T18967 679-681 Protein denotes 50
T18966 675-678 Protein denotes p65

DLUT931

Id Subject Object Predicate Lexical cue
T18979 866-873 Binding denotes binding
T18978 775-781 Negative_regulation denotes excess
T18977 785-790 Protein denotes Oct-1
T18976 679-681 Protein denotes 50
T18975 675-678 Protein denotes p65
R13019 T18977 T18978 themeOf Oct-1,excess
R13020 T18977 T18979 themeOf Oct-1,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19160 467-507 Binding denotes non-specific binding to nuclear proteins
T19159 382-411 Binding denotes the cytokine promoter binding
T19158 675-681 Protein denotes p65/50
T19157 782-794 Protein denotes of Oct-1 DNA
T19156 654-658 Protein denotes NFκB
T19155 488-507 Protein denotes to nuclear proteins
T19154 579-602 Entity denotes to the nuclear extracts
T19153 675-681 Protein denotes p65/50
T19152 395-403 Entity denotes promoter
T19151 382-411 Protein denotes the cytokine promoter binding
T19150 15-31 Entity denotes nuclear extracts
T19149 796-819 Entity denotes unrelated DNA, Table 1)
T19148 632-649 Entity denotes supershift assays
T19147 467-507 Entity denotes non-specific binding to nuclear proteins
T19146 679-681 Protein denotes 50
T19145 682-690 Entity denotes antibody
T19144 782-794 Entity denotes of Oct-1 DNA
T19143 81-115 Entity denotes Nuclear extracts of purified PBMCs
T19142 101-115 Entity denotes purified PBMCs
T19141 412-429 Entity denotes sites (see above)
R13180 T19147 T19160 themeOf non-specific binding to nuclear proteins,non-specific binding to nuclear proteins
R13181 T19152 T19159 themeOf promoter,the cytokine promoter binding
R13182 T19155 T19160 themeOf to nuclear proteins,non-specific binding to nuclear proteins

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19137 873-874 . denotes .
T19136 866-873 JJ denotes binding
T19135 857-865 JJ denotes specific
T19134 852-856 IN denotes with
T19133 844-851 VB denotes compete
T19132 840-843 RB denotes not
T19131 836-839 VBD denotes did
T19130 830-835 WDT denotes which
T19129 828-829 , denotes ,
T19128 824-828 VBN denotes used
T19127 820-823 VBD denotes was
T19126 818-819 -RRB- denotes )
T19125 817-818 CD denotes 1
T19124 811-816 NNP denotes Table
T19123 809-810 , denotes ,
T19122 806-809 NN denotes DNA
T19121 796-805 JJ denotes unrelated
T19120 795-796 -LRB- denotes (
T19119 791-794 NNP denotes DNA
T19118 785-790 NNP denotes Oct-1
T19117 782-784 IN denotes of
T19116 775-781 NN denotes excess
T19115 769-774 NN denotes molar
T19114 761-768 JJ denotes 30-fold
T19113 759-760 DT denotes a
T19112 757-758 , denotes ,
T19111 748-757 NNS denotes reactions
T19110 735-747 JJ denotes non-specific
T19109 727-734 VB denotes exclude
T19108 724-726 TO denotes To
T19107 722-723 . denotes .
T19106 721-722 -RRB- denotes )
T19105 716-721 VBN denotes shown
T19104 712-715 RB denotes not
T19103 707-711 NNS denotes data
T19102 706-707 -LRB- denotes (
T19101 696-705 VBN denotes performed
T19100 691-695 VBD denotes were
T19099 682-690 NN denotes antibody
T19098 675-681 CD denotes p65/50
T19097 666-674 VBN denotes combined
T19096 664-665 DT denotes a
T19095 659-663 IN denotes with
T19094 654-658 NNP denotes NFκB
T19093 650-653 IN denotes for
T19092 643-649 NNS denotes assays
T19091 632-642 JJ denotes supershift
T19067 518-529 NNS denotes experiments
T19066 513-517 JJ denotes such
T19065 509-512 IN denotes For
T19064 507-508 . denotes .
T19063 499-507 NNS denotes proteins
T19062 491-498 JJ denotes nuclear
T19061 488-490 TO denotes to
T19060 480-487 JJ denotes binding
T19059 467-479 JJ denotes non-specific
T19058 459-466 VB denotes prevent
T19057 456-458 TO denotes to
T19056 450-455 NN denotes order
T19055 447-449 IN denotes in
T19054 443-446 RP denotes out
T19053 435-442 VBN denotes carried
T19052 430-434 VBD denotes were
T19051 428-429 -RRB- denotes )
T19050 423-428 IN denotes above
T19049 419-422 VB denotes see
T19048 418-419 -LRB- denotes (
T19047 412-417 NNS denotes sites
T19046 404-411 JJ denotes binding
T19045 395-403 NN denotes promoter
T19044 386-394 NN denotes cytokine
T19043 382-385 DT denotes the
T19042 379-381 IN denotes of
T19041 372-378 NNS denotes oligos
T19040 364-371 VBN denotes mutated
T19039 354-363 JJ denotes unlabeled
T19038 350-353 CC denotes and
T19037 342-349 VBN denotes labeled
T19036 337-341 IN denotes with
T19035 325-336 NNS denotes experiments
T19034 313-324 NN denotes Competition
T19033 311-312 . denotes .
T19032 303-311 NNS denotes controls
T19031 290-302 JJ denotes unstimulated
T19030 287-289 IN denotes of
T19029 281-286 NNS denotes bands
T19028 278-280 TO denotes to
T19027 267-277 VBN denotes normalized
T19026 263-266 VBD denotes was
T19025 257-262 NNS denotes bands
T19024 249-256 VBN denotes shifted
T19023 246-248 IN denotes of
T19022 236-245 NN denotes intensity
T19021 232-235 DT denotes The
T19020 230-231 . denotes .
T19019 229-230 NNP denotes ]
T19018 227-229 CD denotes 56
T19017 226-227 NNP denotes [
T19016 220-225 NN denotes setup
T19015 207-219 JJ denotes experimental
T19014 203-206 PRP$ denotes our
T19013 199-202 IN denotes for
T19012 190-198 VBN denotes modified
T19011 186-189 CC denotes and
T19010 184-185 NNP denotes ]
T19009 182-184 CD denotes 27
T19008 181-182 NNP denotes [
T19007 177-180 FW denotes al.
T19006 174-176 FW denotes et
T19005 168-173 NNP denotes Trede
T19004 165-167 IN denotes by
T19003 155-164 VBN denotes described
T19002 145-154 NN denotes technique
T19001 143-144 DT denotes a
T19000 140-142 TO denotes to
T18999 130-139 VBG denotes according
T18998 121-129 JJ denotes prepared
T18997 116-120 VBD denotes were
T18996 110-115 NNS denotes PBMCs
T18995 101-109 JJ denotes purified
T18994 98-100 IN denotes of
T18993 89-97 NNS denotes extracts
T18992 81-88 NNP denotes Nuclear
T18991 79-80 -RRB- denotes )
T18990 75-79 NNP denotes EMSA
T18989 74-75 -LRB- denotes (
T18988 67-73 NNS denotes assays
T18987 61-66 NN denotes shift
T18986 52-60 NN denotes mobility
T18985 36-51 JJ denotes electrophoretic
T18984 32-35 CC denotes and
T18983 23-31 NNS denotes extracts
T18982 15-22 JJ denotes nuclear
T18981 12-14 IN denotes of
T18980 0-11 NNP denotes Preparation
T19090 630-631 , denotes ,
T19089 623-630 JJ denotes binding
T19088 620-622 IN denotes of
T19087 608-619 NN denotes specificity
T19086 604-607 IN denotes For
T19085 602-603 . denotes .
T19084 594-602 NNS denotes extracts
T19083 586-593 JJ denotes nuclear
T19082 582-585 DT denotes the
T19081 579-581 TO denotes to
T19080 573-578 VBN denotes added
T19079 569-572 VBD denotes was
T19078 562-568 NNS denotes oligos
T19077 552-561 JJ denotes unlabeled
T19076 549-551 IN denotes of
T19075 547-548 -RRB- denotes )
T19074 546-547 NN denotes ×
T19073 544-546 CD denotes 50
T19072 542-543 CD denotes 5
T19071 541-542 -LRB- denotes (
T19070 534-540 JJ denotes excess
T19069 531-533 DT denotes an
T19068 529-530 , denotes ,
R13021 T18980 T18980 ROOT Preparation,Preparation
R13022 T18981 T18980 prep of,Preparation
R13023 T18982 T18983 amod nuclear,extracts
R13024 T18983 T18981 pobj extracts,of
R13025 T18984 T18983 cc and,extracts
R13026 T18985 T18987 amod electrophoretic,shift
R13027 T18986 T18987 compound mobility,shift
R13028 T18987 T18988 compound shift,assays
R13029 T18988 T18983 conj assays,extracts
R13030 T18989 T18993 punct (,extracts
R13031 T18990 T18993 nmod EMSA,extracts
R13032 T18991 T18990 punct ),EMSA
R13033 T18992 T18993 compound Nuclear,extracts
R13034 T18993 T18980 appos extracts,Preparation
R13035 T18994 T18993 prep of,extracts
R13036 T18995 T18996 amod purified,PBMCs
R13037 T18996 T18994 pobj PBMCs,of
R13038 T18997 T18980 auxpass were,Preparation
R13039 T18998 T18997 acomp prepared,were
R13040 T18999 T18997 prep according,were
R13041 T19000 T18999 prep to,according
R13042 T19001 T19002 det a,technique
R13043 T19002 T19000 pobj technique,to
R13044 T19003 T19002 acl described,technique
R13045 T19004 T19003 agent by,described
R13046 T19005 T19004 pobj Trede,by
R13047 T19006 T19010 nmod et,]
R13048 T19007 T19008 nmod al.,[
R13049 T19008 T19010 nmod [,]
R13050 T19009 T19010 nummod 27,]
R13051 T19010 T19002 appos ],technique
R13052 T19011 T18999 cc and,according
R13053 T19012 T18999 conj modified,according
R13054 T19013 T19012 prep for,modified
R13055 T19014 T19016 poss our,setup
R13056 T19015 T19016 amod experimental,setup
R13057 T19016 T19013 pobj setup,for
R13058 T19017 T19019 nmod [,]
R13059 T19018 T19019 nummod 56,]
R13060 T19019 T19016 appos ],setup
R13061 T19020 T18997 punct .,were
R13062 T19021 T19022 det The,intensity
R13063 T19022 T19026 nsubj intensity,was
R13064 T19023 T19022 prep of,intensity
R13065 T19024 T19025 amod shifted,bands
R13066 T19025 T19023 pobj bands,of
R13067 T19026 T19026 ROOT was,was
R13068 T19027 T19026 acomp normalized,was
R13069 T19028 T19027 prep to,normalized
R13070 T19029 T19028 pobj bands,to
R13071 T19030 T19029 prep of,bands
R13072 T19031 T19032 amod unstimulated,controls
R13073 T19032 T19030 pobj controls,of
R13074 T19033 T19026 punct .,was
R13075 T19034 T19035 compound Competition,experiments
R13076 T19035 T19035 ROOT experiments,experiments
R13077 T19036 T19035 prep with,experiments
R13078 T19037 T19036 pobj labeled,with
R13079 T19038 T19037 cc and,labeled
R13080 T19039 T19040 amod unlabeled,mutated
R13081 T19040 T19037 conj mutated,labeled
R13082 T19041 T19040 dobj oligos,mutated
R13083 T19042 T19041 prep of,oligos
R13084 T19043 T19045 det the,promoter
R13085 T19044 T19045 compound cytokine,promoter
R13086 T19045 T19047 nmod promoter,sites
R13087 T19046 T19047 amod binding,sites
R13088 T19047 T19042 pobj sites,of
R13089 T19048 T19049 punct (,see
R13090 T19049 T19041 parataxis see,oligos
R13091 T19050 T19049 advmod above,see
R13092 T19051 T19049 punct ),see
R13093 T19052 T19053 auxpass were,carried
R13094 T19053 T19037 conj carried,labeled
R13095 T19054 T19053 prt out,carried
R13096 T19055 T19053 prep in,carried
R13097 T19056 T19055 pobj order,in
R13098 T19057 T19058 aux to,prevent
R13099 T19058 T19056 acl prevent,order
R13100 T19059 T19060 amod non-specific,binding
R13101 T19060 T19058 dobj binding,prevent
R13102 T19061 T19060 prep to,binding
R13103 T19062 T19063 amod nuclear,proteins
R13104 T19063 T19061 pobj proteins,to
R13105 T19064 T19035 punct .,experiments
R13106 T19065 T19080 prep For,added
R13107 T19066 T19067 amod such,experiments
R13108 T19067 T19065 pobj experiments,For
R13109 T19068 T19080 punct ",",added
R13110 T19069 T19080 det an,added
R13111 T19070 T19080 nsubjpass excess,added
R13112 T19071 T19074 punct (,×
R13113 T19072 T19074 nummod 5,×
R13114 T19073 T19072 prep 50,5
R13115 T19074 T19070 appos ×,excess
R13116 T19075 T19074 punct ),×
R13117 T19076 T19074 prep of,×
R13118 T19077 T19078 amod unlabeled,oligos
R13119 T19078 T19076 pobj oligos,of
R13120 T19079 T19080 auxpass was,added
R13121 T19080 T19080 ROOT added,added
R13122 T19081 T19080 prep to,added
R13123 T19082 T19084 det the,extracts
R13124 T19083 T19084 amod nuclear,extracts
R13125 T19084 T19081 pobj extracts,to
R13126 T19085 T19080 punct .,added
R13127 T19086 T19101 prep For,performed
R13128 T19087 T19086 pobj specificity,For
R13129 T19088 T19087 prep of,specificity
R13130 T19089 T19092 amod binding,assays
R13131 T19090 T19092 punct ",",assays
R13132 T19091 T19092 amod supershift,assays
R13133 T19092 T19088 pobj assays,of
R13134 T19093 T19087 prep for,specificity
R13135 T19094 T19093 pobj NFκB,for
R13136 T19095 T19087 prep with,specificity
R13137 T19096 T19099 det a,antibody
R13138 T19097 T19099 amod combined,antibody
R13139 T19098 T19099 nummod p65/50,antibody
R13140 T19099 T19095 pobj antibody,with
R13141 T19100 T19101 auxpass were,performed
R13142 T19101 T19101 ROOT performed,performed
R13143 T19102 T19105 punct (,shown
R13144 T19103 T19105 nsubjpass data,shown
R13145 T19104 T19105 neg not,shown
R13146 T19105 T19101 parataxis shown,performed
R13147 T19106 T19105 punct ),shown
R13148 T19107 T19101 punct .,performed
R13149 T19108 T19109 aux To,exclude
R13150 T19109 T19128 advcl exclude,used
R13151 T19110 T19111 amod non-specific,reactions
R13152 T19111 T19109 dobj reactions,exclude
R13153 T19112 T19111 punct ",",reactions
R13154 T19113 T19116 det a,excess
R13155 T19114 T19116 amod 30-fold,excess
R13156 T19115 T19116 compound molar,excess
R13157 T19116 T19128 nsubjpass excess,used
R13158 T19117 T19116 prep of,excess
R13159 T19118 T19119 compound Oct-1,DNA
R13160 T19119 T19117 pobj DNA,of
R13161 T19120 T19119 punct (,DNA
R13162 T19121 T19122 amod unrelated,DNA
R13163 T19122 T19119 appos DNA,DNA
R13164 T19123 T19119 punct ",",DNA
R13165 T19124 T19119 appos Table,DNA
R13166 T19125 T19124 nummod 1,Table
R13167 T19126 T19119 punct ),DNA
R13168 T19127 T19128 auxpass was,used
R13169 T19128 T19128 ROOT used,used
R13170 T19129 T19128 punct ",",used
R13171 T19130 T19133 nsubj which,compete
R13172 T19131 T19133 aux did,compete
R13173 T19132 T19133 neg not,compete
R13174 T19133 T19128 relcl compete,used
R13175 T19134 T19133 prep with,compete
R13176 T19135 T19136 amod specific,binding
R13177 T19136 T19134 pobj binding,with
R13178 T19137 T19128 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18810 866-873 Binding denotes binding
T18809 785-790 Protein denotes Oct-1
T18808 654-658 Protein denotes NFκB
R12865 T18809 T18810 themeOf Oct-1,binding

testone

Id Subject Object Predicate Lexical cue
T18779 866-873 Binding denotes binding
T18778 480-487 Binding denotes binding
T18777 785-790 Protein denotes Oct-1
T18776 679-681 Protein denotes 50
T18775 675-678 Protein denotes p65
R12863 T18777 T18779 themeOf Oct-1,binding

test3

Id Subject Object Predicate Lexical cue
T18787 866-873 Binding denotes binding
T18786 785-790 Protein denotes Oct-1
T18785 679-681 Protein denotes 50
T18784 675-678 Protein denotes p65
T18783 480-487 Binding denotes binding
T18782 785-790 Protein denotes Oct-1
T18781 679-681 Protein denotes 50
T18780 675-678 Protein denotes p65
R12864 T18786 T18787 themeOf Oct-1,binding