> top > docs > PMC:1472690 > spans > 34747-35719 > annotations

PMC:1472690 / 34747-35719 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18476 956-958 POS denotes 's
T18475 944-956 NN denotes manufacturer
T18474 940-943 DT denotes the
T18473 937-939 TO denotes to
T18472 927-936 VB denotes according
T18471 925-926 -RRB- denotes )
T18470 916-925 NNP denotes Pharmacia
T18469 915-916 -LRB- denotes (
T18468 907-914 NNP denotes Columns
T18467 901-906 NNP denotes Micro
T18466 896-900 NNP denotes G-50
T18465 890-895 NNP denotes Quant
T18464 884-889 NNP denotes Probe
T18463 878-883 VB denotes using
T18462 867-877 NN denotes filtration
T18461 863-866 NN denotes gel
T18460 859-862 IN denotes via
T18459 850-858 VB denotes purified
T18458 845-849 VB denotes were
T18457 838-844 NN denotes oligos
T18456 835-837 NN denotes ds
T18455 831-834 DT denotes the
T18454 829-830 -COMMA- denotes ,
T18453 819-829 RB denotes Afterwards
T18452 805-817 RB denotes respectively
T18451 803-804 -COMMA- denotes ,
T18450 795-803 NN denotes proteins
T18449 790-794 NN denotes NFκB
T18448 786-789 CC denotes and
T18447 781-785 NN denotes NFAT
T18446 778-780 IN denotes of
T18445 770-777 NN denotes binding
T18444 766-769 DT denotes the
T18443 762-765 IN denotes for
T18442 754-761 JJ denotes crucial
T18441 751-753 VB denotes be
T18440 748-750 TO denotes to
T18439 743-747 VB denotes seem
T18438 737-742 WDT denotes which
T18437 735-736 -COMMA- denotes ,
T18436 726-735 NN denotes sequences
T18435 721-725 IN denotes with
T18434 711-720 VB denotes interfere
T18433 708-710 TO denotes to
T18432 699-707 VB denotes reported
T18431 694-698 VB denotes been
T18430 689-693 VB denotes have
T18429 687-688 -RRB- denotes ]
T18428 685-687 CD denotes 55
T18427 684-685 -LRB- denotes [
T18426 675-683 NN denotes promoter
T18425 670-674 NN denotes TNFα
T18424 666-669 DT denotes the
T18423 663-665 IN denotes of
T18422 654-662 NN denotes sequence
T18421 644-653 NN denotes consensus
T18420 642-643 NN denotes κ
T18419 638-641 DT denotes the
T18418 635-637 IN denotes in
T18417 631-634 CC denotes and
T18416 629-630 -RRB- denotes ]
T18415 627-629 CD denotes 29
T18414 626-627 -LRB- denotes [
T18413 617-625 NN denotes promoter
T18412 612-616 NN denotes IFNγ
T18411 608-611 DT denotes the
T18410 605-607 IN denotes of
T18409 600-604 NN denotes site
T18408 597-599 NN denotes P2
T18407 593-596 DT denotes the
T18406 590-592 IN denotes in
T18405 580-589 NN denotes Mutations
T18404 571-578 NN denotes control
T18403 560-570 JJ denotes additional
T18402 557-559 DT denotes an
T18401 554-556 IN denotes as
T18400 549-553 VB denotes used
T18399 544-548 VB denotes were
T18398 537-543 NN denotes oligos
T18397 529-536 VB denotes mutated
T18396 527-528 -COMMA- denotes ,
T18395 521-527 NN denotes oligos
T18394 517-520 DT denotes the
T18393 514-516 IN denotes of
T18392 502-513 NN denotes specificity
T18391 494-501 NN denotes binding
T18390 490-493 DT denotes the
T18389 485-489 VB denotes test
T18388 482-484 TO denotes To
T18387 468-480 NN denotes instructions
T18386 465-467 POS denotes 's
T18385 453-465 NN denotes manufacturer
T18384 449-452 DT denotes the
T18383 446-448 TO denotes to
T18382 436-445 VB denotes according
T18381 434-435 -RRB- denotes )
T18380 427-434 NNP denotes Germany
T18379 425-426 -COMMA- denotes ,
T18378 417-425 NNP denotes Freiburg
T18377 415-416 -COMMA- denotes ,
T18376 412-415 NNP denotes LKB
T18375 402-411 NNP denotes Pharmacia
T18374 400-401 -COMMA- denotes ,
T18373 397-400 NN denotes Kit
T18372 393-396 NN denotes PNK
T18371 392-393 -LRB- denotes (
T18370 388-391 NN denotes Kit
T18369 354-387 NN denotes Ready-To-Go-Polynucleotide-Kinase
T18368 350-353 DT denotes the
T18367 344-349 VB denotes using
T18366 342-343 -RRB- denotes )
T18365 335-342 NNP denotes Germany
T18364 333-334 -COMMA- denotes ,
T18363 321-333 NNP denotes Braunschweig
T18362 319-320 -COMMA- denotes ,
T18361 311-319 NNP denotes Amersham
T18360 309-310 -COMMA- denotes ,
T18359 302-309 NN denotes Ci/mmol
T18358 296-301 CD denotes 3,000
T18357 295-296 -LRB- denotes (
T18356 285-294 NN denotes 5'γ-P-ATP
T18355 280-284 IN denotes with
T18354 268-279 JJ denotes 32P-labeled
T18353 264-267 CC denotes and
T18352 262-263 -RRB- denotes )
T18351 255-262 NNP denotes Germany
T18350 253-254 -COMMA- denotes ,
T18349 247-253 NNP denotes Berlin
T18348 245-246 -COMMA- denotes ,
T18347 238-245 NNP denotes Molbiol
T18346 234-237 NNP denotes TIB
T18345 233-234 -LRB- denotes (
T18344 231-232 -COMMA- denotes ,
T18343 230-231 -RRB- denotes )
T18342 229-230 CD denotes 1
T18341 223-228 JJ denotes Table
T18340 220-222 IN denotes in
T18339 208-219 VB denotes illustrated
T18338 207-208 -LRB- denotes (
T18337 200-206 NN denotes oligos
T18336 198-199 -RRB- denotes )
T18335 196-198 NN denotes ss
T18334 195-196 -LRB- denotes (
T18333 186-194 JJ denotes stranded
T18332 179-185 JJ denotes single
T18331 174-178 IN denotes from
T18330 162-173 VB denotes synthesised
T18329 157-161 VB denotes were
T18328 147-156 NN denotes promoters
T18327 142-146 NN denotes IL-6
T18326 138-141 CC denotes and
T18325 133-137 NN denotes IFNγ
T18324 131-132 -COMMA- denotes ,
T18323 127-131 NN denotes IL-8
T18322 125-126 -COMMA- denotes ,
T18321 121-125 NN denotes TNFα
T18320 117-120 DT denotes the
T18319 112-116 IN denotes from
T18318 110-111 -RRB- denotes )
T18317 104-110 NN denotes oligos
T18316 103-104 -LRB- denotes (
T18315 86-102 NN denotes oligonucleotides
T18314 84-85 -RRB- denotes )
T18313 82-84 NN denotes ds
T18312 81-82 -LRB- denotes (
T18311 65-80 JJ denotes double-stranded
T18310 51-64 JJ denotes complementary
T18309 47-50 DT denotes The
T18308 30-46 JJ denotes 5'-32-P-Labeling
T18307 26-29 CC denotes and
T18306 24-25 -RRB- denotes )
T18305 18-24 NN denotes Oligos
T18304 17-18 -LRB- denotes (
T18477 959-971 NN denotes instructions
T18303 0-16 NN denotes Oligonucleotides
R12470 T18303 T18304 arg1Of Oligonucleotides,(
R12471 T18303 T18307 arg1Of Oligonucleotides,and
R12472 T18305 T18304 arg2Of Oligos,(
R12473 T18306 T18304 arg3Of ),(
R12474 T18308 T18307 arg2Of 5'-32-P-Labeling,and
R12475 T18313 T18312 arg2Of ds,(
R12476 T18314 T18312 arg3Of ),(
R12477 T18315 T18309 arg1Of oligonucleotides,The
R12478 T18315 T18310 arg1Of oligonucleotides,complementary
R12479 T18315 T18311 arg1Of oligonucleotides,double-stranded
R12480 T18315 T18312 arg1Of oligonucleotides,(
R12481 T18315 T18316 arg1Of oligonucleotides,(
R12482 T18315 T18319 arg1Of oligonucleotides,from
R12483 T18315 T18329 arg1Of oligonucleotides,were
R12484 T18315 T18330 arg2Of oligonucleotides,synthesised
R12485 T18315 T18354 arg1Of oligonucleotides,32P-labeled
R12486 T18317 T18316 arg2Of oligos,(
R12487 T18318 T18316 arg3Of ),(
R12488 T18321 T18322 arg1Of TNFα,","
R12489 T18322 T18324 arg1Of ",",","
R12490 T18323 T18322 arg2Of IL-8,","
R12491 T18324 T18326 arg1Of ",",and
R12492 T18325 T18324 arg2Of IFNγ,","
R12493 T18327 T18326 arg2Of IL-6,and
R12494 T18328 T18319 arg2Of promoters,from
R12495 T18328 T18320 arg1Of promoters,the
R12496 T18328 T18321 arg1Of promoters,TNFα
R12497 T18328 T18323 arg1Of promoters,IL-8
R12498 T18328 T18325 arg1Of promoters,IFNγ
R12499 T18328 T18327 arg1Of promoters,IL-6
R12500 T18330 T18331 arg1Of synthesised,from
R12501 T18330 T18353 arg1Of synthesised,and
R12502 T18333 T18332 arg1Of stranded,single
R12503 T18333 T18334 arg1Of stranded,(
R12504 T18335 T18334 arg2Of ss,(
R12505 T18336 T18334 arg3Of ),(
R12506 T18337 T18331 arg2Of oligos,from
R12507 T18337 T18333 arg1Of oligos,stranded
R12508 T18337 T18338 arg1Of oligos,(
R12509 T18337 T18344 arg1Of oligos,","
R12510 T18337 T18345 arg1Of oligos,(
R12511 T18339 T18338 arg2Of illustrated,(
R12512 T18339 T18340 arg1Of illustrated,in
R12513 T18342 T18340 arg2Of 1,in
R12514 T18342 T18341 arg1Of 1,Table
R12515 T18343 T18338 arg3Of ),(
R12516 T18347 T18345 arg2Of Molbiol,(
R12517 T18347 T18346 arg1Of Molbiol,TIB
R12518 T18347 T18348 arg1Of Molbiol,","
R12519 T18349 T18348 arg2Of Berlin,","
R12520 T18349 T18350 arg1Of Berlin,","
R12521 T18351 T18350 arg2Of Germany,","
R12522 T18352 T18345 arg3Of ),(
R12523 T18353 T18329 arg2Of and,were
R12524 T18354 T18353 arg2Of 32P-labeled,and
R12525 T18354 T18355 arg1Of 32P-labeled,with
R12526 T18356 T18355 arg2Of 5'γ-P-ATP,with
R12527 T18356 T18357 arg1Of 5'γ-P-ATP,(
R12528 T18356 T18367 arg1Of 5'γ-P-ATP,using
R12529 T18359 T18357 arg2Of Ci/mmol,(
R12530 T18359 T18358 arg1Of Ci/mmol,"3,000"
R12531 T18359 T18360 arg1Of Ci/mmol,","
R12532 T18359 T18364 arg1Of Ci/mmol,","
R12533 T18361 T18362 arg1Of Amersham,","
R12534 T18362 T18360 arg2Of ",",","
R12535 T18363 T18362 arg2Of Braunschweig,","
R12536 T18365 T18364 arg2Of Germany,","
R12537 T18366 T18357 arg3Of ),(
R12538 T18367 T18382 arg1Of using,according
R12539 T18370 T18367 arg2Of Kit,using
R12540 T18370 T18368 arg1Of Kit,the
R12541 T18370 T18369 arg1Of Kit,Ready-To-Go-Polynucleotide-Kinase
R12542 T18370 T18371 arg1Of Kit,(
R12543 T18373 T18372 arg1Of Kit,PNK
R12544 T18373 T18374 arg1Of Kit,","
R12545 T18373 T18377 arg1Of Kit,","
R12546 T18376 T18374 arg2Of LKB,","
R12547 T18376 T18375 arg1Of LKB,Pharmacia
R12548 T18377 T18371 arg2Of ",",(
R12549 T18378 T18377 arg2Of Freiburg,","
R12550 T18378 T18379 arg1Of Freiburg,","
R12551 T18380 T18379 arg2Of Germany,","
R12552 T18381 T18371 arg3Of ),(
R12553 T18383 T18382 arg2Of to,according
R12554 T18385 T18384 arg1Of manufacturer,the
R12555 T18385 T18386 arg2Of manufacturer,'s
R12556 T18387 T18383 arg2Of instructions,to
R12557 T18387 T18386 arg1Of instructions,'s
R12558 T18389 T18388 arg1Of test,To
R12559 T18392 T18389 arg2Of specificity,test
R12560 T18392 T18390 arg1Of specificity,the
R12561 T18392 T18391 arg1Of specificity,binding
R12562 T18392 T18393 arg1Of specificity,of
R12563 T18395 T18393 arg2Of oligos,of
R12564 T18395 T18394 arg1Of oligos,the
R12565 T18398 T18397 arg2Of oligos,mutated
R12566 T18398 T18399 arg1Of oligos,were
R12567 T18398 T18400 arg2Of oligos,used
R12568 T18400 T18388 modOf used,To
R12569 T18400 T18396 arg1Of used,","
R12570 T18400 T18399 arg2Of used,were
R12571 T18400 T18401 arg1Of used,as
R12572 T18404 T18401 arg2Of control,as
R12573 T18404 T18402 arg1Of control,an
R12574 T18404 T18403 arg1Of control,additional
R12575 T18405 T18406 arg1Of Mutations,in
R12576 T18405 T18418 arg1Of Mutations,in
R12577 T18405 T18427 arg1Of Mutations,[
R12578 T18405 T18430 arg1Of Mutations,have
R12579 T18405 T18431 arg1Of Mutations,been
R12580 T18405 T18432 arg2Of Mutations,reported
R12581 T18405 T18434 arg1Of Mutations,interfere
R12582 T18406 T18417 arg1Of in,and
R12583 T18409 T18406 arg2Of site,in
R12584 T18409 T18407 arg1Of site,the
R12585 T18409 T18408 arg1Of site,P2
R12586 T18409 T18410 arg1Of site,of
R12587 T18413 T18410 arg2Of promoter,of
R12588 T18413 T18411 arg1Of promoter,the
R12589 T18413 T18412 arg1Of promoter,IFNγ
R12590 T18413 T18414 arg1Of promoter,[
R12591 T18415 T18414 arg2Of 29,[
R12592 T18416 T18414 arg3Of ],[
R12593 T18418 T18417 arg2Of in,and
R12594 T18422 T18418 arg2Of sequence,in
R12595 T18422 T18419 arg1Of sequence,the
R12596 T18422 T18420 arg1Of sequence,κ
R12597 T18422 T18421 arg1Of sequence,consensus
R12598 T18422 T18423 arg1Of sequence,of
R12599 T18426 T18423 arg2Of promoter,of
R12600 T18426 T18424 arg1Of promoter,the
R12601 T18426 T18425 arg1Of promoter,TNFα
R12602 T18428 T18427 arg2Of 55,[
R12603 T18429 T18427 arg3Of ],[
R12604 T18432 T18430 arg2Of reported,have
R12605 T18432 T18431 arg2Of reported,been
R12606 T18434 T18432 arg3Of interfere,reported
R12607 T18434 T18433 arg1Of interfere,to
R12608 T18434 T18435 arg1Of interfere,with
R12609 T18436 T18435 arg2Of sequences,with
R12610 T18436 T18437 arg1Of sequences,","
R12611 T18436 T18438 arg1Of sequences,which
R12612 T18436 T18439 arg1Of sequences,seem
R12613 T18436 T18441 arg1Of sequences,be
R12614 T18436 T18442 arg1Of sequences,crucial
R12615 T18441 T18439 arg2Of be,seem
R12616 T18441 T18440 arg1Of be,to
R12617 T18441 T18451 arg1Of be,","
R12618 T18441 T18452 arg1Of be,respectively
R12619 T18442 T18441 arg2Of crucial,be
R12620 T18442 T18443 arg1Of crucial,for
R12621 T18445 T18443 arg2Of binding,for
R12622 T18445 T18444 arg1Of binding,the
R12623 T18445 T18446 arg1Of binding,of
R12624 T18447 T18448 arg1Of NFAT,and
R12625 T18449 T18448 arg2Of NFκB,and
R12626 T18450 T18446 arg2Of proteins,of
R12627 T18450 T18447 arg1Of proteins,NFAT
R12628 T18450 T18449 arg1Of proteins,NFκB
R12629 T18457 T18455 arg1Of oligos,the
R12630 T18457 T18456 arg1Of oligos,ds
R12631 T18457 T18458 arg1Of oligos,were
R12632 T18457 T18459 arg2Of oligos,purified
R12633 T18457 T18463 arg1Of oligos,using
R12634 T18459 T18453 arg1Of purified,Afterwards
R12635 T18459 T18454 arg1Of purified,","
R12636 T18459 T18458 arg2Of purified,were
R12637 T18459 T18460 arg1Of purified,via
R12638 T18459 T18463 modOf purified,using
R12639 T18462 T18460 arg2Of filtration,via
R12640 T18462 T18461 arg1Of filtration,gel
R12641 T18468 T18464 arg1Of Columns,Probe
R12642 T18468 T18465 arg1Of Columns,Quant
R12643 T18468 T18466 arg1Of Columns,G-50
R12644 T18468 T18467 arg1Of Columns,Micro
R12645 T18468 T18469 arg1Of Columns,(
R12646 T18468 T18472 arg1Of Columns,according
R12647 T18470 T18469 arg2Of Pharmacia,(
R12648 T18471 T18469 arg3Of ),(
R12649 T18473 T18472 arg2Of to,according
R12650 T18475 T18474 arg1Of manufacturer,the
R12651 T18475 T18476 arg2Of manufacturer,'s
R12652 T18476 T18473 arg2Of 's,to
R12653 T18477 T18463 arg2Of instructions,using
R12654 T18477 T18468 arg1Of instructions,Columns

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18289 781-785 Protein denotes NFAT
T18288 670-674 Protein denotes TNFα
T18287 612-616 Protein denotes IFNγ
T18286 142-146 Protein denotes IL-6
T18285 133-137 Protein denotes IFNγ
T18284 127-131 Protein denotes IL-8
T18283 121-125 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18480 127-131 http://www.uniprot.org/uniprot/P10145 denotes IL-8
T18479 670-674 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T18478 121-125 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T18481 142-146 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-BP

Id Subject Object Predicate Lexical cue
T18272 393-396 http://purl.obolibrary.org/obo/GO_0051731 denotes PNK

GO-MF

Id Subject Object Predicate Lexical cue
T18295 770-785 http://purl.obolibrary.org/obo/GO_0051525 denotes binding of NFAT
T18294 770-777 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T18293 494-501 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T18292 393-396 http://purl.obolibrary.org/obo/GO_0051731 denotes PNK
T18291 142-146 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T18290 127-131 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8

sentences

Id Subject Object Predicate Lexical cue
T18271 819-972 Sentence denotes Afterwards, the ds oligos were purified via gel filtration using Probe Quant G-50 Micro Columns (Pharmacia) according to the manufacturer's instructions.
T18270 580-818 Sentence denotes Mutations in the P2 site of the IFNγ promoter [29] and in the κ consensus sequence of the TNFα promoter [55] have been reported to interfere with sequences, which seem to be crucial for the binding of NFAT and NFκB proteins, respectively.
T18269 482-579 Sentence denotes To test the binding specificity of the oligos, mutated oligos were used as an additional control.
T18268 47-481 Sentence denotes The complementary double-stranded (ds) oligonucleotides (oligos) from the TNFα, IL-8, IFNγ and IL-6 promoters were synthesised from single stranded (ss) oligos (illustrated in Table 1), (TIB Molbiol, Berlin, Germany) and 32P-labeled with 5'γ-P-ATP (3,000 Ci/mmol, Amersham, Braunschweig, Germany) using the Ready-To-Go-Polynucleotide-Kinase Kit (PNK Kit, Pharmacia LKB, Freiburg, Germany) according to the manufacturer's instructions.
T18267 0-46 Sentence denotes Oligonucleotides (Oligos) and 5'-32-P-Labeling
T239 0-46 Sentence denotes Oligonucleotides (Oligos) and 5'-32-P-Labeling
T240 47-481 Sentence denotes The complementary double-stranded (ds) oligonucleotides (oligos) from the TNFα, IL-8, IFNγ and IL-6 promoters were synthesised from single stranded (ss) oligos (illustrated in Table 1), (TIB Molbiol, Berlin, Germany) and 32P-labeled with 5'γ-P-ATP (3,000 Ci/mmol, Amersham, Braunschweig, Germany) using the Ready-To-Go-Polynucleotide-Kinase Kit (PNK Kit, Pharmacia LKB, Freiburg, Germany) according to the manufacturer's instructions.
T241 482-579 Sentence denotes To test the binding specificity of the oligos, mutated oligos were used as an additional control.
T242 580-818 Sentence denotes Mutations in the P2 site of the IFNγ promoter [29] and in the κ consensus sequence of the TNFα promoter [55] have been reported to interfere with sequences, which seem to be crucial for the binding of NFAT and NFκB proteins, respectively.
T243 819-972 Sentence denotes Afterwards, the ds oligos were purified via gel filtration using Probe Quant G-50 Micro Columns (Pharmacia) according to the manufacturer's instructions.

simple1

Id Subject Object Predicate Lexical cue
T18302 781-785 Protein denotes NFAT
T18301 670-674 Protein denotes TNFα
T18300 612-616 Protein denotes IFNγ
T18299 142-146 Protein denotes IL-6
T18298 133-137 Protein denotes IFNγ
T18297 127-131 Protein denotes IL-8
T18296 121-125 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T18764 754-761 Positive_regulation denotes crucial
T18763 770-777 Binding denotes binding
T18762 781-785 Protein denotes NFAT
T18761 670-674 Protein denotes TNFα
T18760 612-616 Protein denotes IFNγ
T18759 142-146 Protein denotes IL-6
T18758 133-137 Protein denotes IFNγ
T18757 127-131 Protein denotes IL-8
T18756 121-125 Protein denotes TNFα
R12861 T18762 T18763 themeOf NFAT,binding
R12862 T18763 T18764 themeOf binding,crucial

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18490 770-777 Binding denotes binding
T18489 754-761 Positive_regulation denotes crucial
T18488 781-785 Protein denotes NFAT
T18487 670-674 Protein denotes TNFα
T18486 612-616 Protein denotes IFNγ
T18485 142-146 Protein denotes IL-6
T18484 133-137 Protein denotes IFNγ
T18483 127-131 Protein denotes IL-8
T18482 121-125 Protein denotes TNFα
R12655 T18488 T18490 themeOf NFAT,binding
R12656 T18490 T18489 themeOf binding,crucial

DLUT931

Id Subject Object Predicate Lexical cue
T18521 754-761 Positive_regulation denotes crucial
T18520 770-777 Binding denotes binding
T18519 781-785 Protein denotes NFAT
T18518 670-674 Protein denotes TNFα
T18517 612-616 Protein denotes IFNγ
T18516 142-146 Protein denotes IL-6
T18515 133-137 Protein denotes IFNγ
T18514 127-131 Protein denotes IL-8
T18513 121-125 Protein denotes TNFα
R12663 T18519 T18520 themeOf NFAT,binding
R12664 T18520 T18521 themeOf binding,crucial

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18755 737-817 Regulation denotes which seem to be crucial for the binding of NFAT and NFκB proteins, respectively
T18754 762-803 Binding denotes for the binding of NFAT and NFκB proteins
T18753 121-125 Protein denotes TNFα
T18752 790-794 Protein denotes NFκB
T18751 884-895 Entity denotes Probe Quant
T18750 663-688 Entity denotes of the TNFα promoter [55]
T18749 608-630 Entity denotes the IFNγ promoter [29]
T18748 142-146 Protein denotes IL-6
T18747 366-380 Entity denotes Polynucleotide
T18746 0-25 Entity denotes Oligonucleotides (Oligos)
T18745 670-674 Protein denotes TNFα
T18744 133-137 Protein denotes IFNγ
T18743 778-803 Protein denotes of NFAT and NFκB proteins
T18742 393-396 Protein denotes PNK
T18741 831-844 Entity denotes the ds oligos
T18740 612-616 Protein denotes IFNγ
T18739 381-387 Protein denotes Kinase
T18738 593-643 Entity denotes the P2 site of the IFNγ promoter [29] and in the κ
T18737 117-156 Entity denotes the TNFα, IL-8, IFNγ and IL-6 promoters
T18736 127-131 Protein denotes IL-8
T18735 393-400 Protein denotes PNK Kit
T18734 863-866 Entity denotes gel
T18733 82-84 Entity denotes ds
T18732 86-111 Entity denotes oligonucleotides (oligos)
T18731 781-785 Protein denotes NFAT
T18730 350-391 Protein denotes the Ready-To-Go-Polynucleotide-Kinase Kit
R12857 T18743 T18754 themeOf of NFAT and NFκB proteins,for the binding of NFAT and NFκB proteins
R12858 T18749 T18740 partOf the IFNγ promoter [29],IFNγ
R12859 T18750 T18745 partOf of the TNFα promoter [55],TNFα
R12860 T18754 T18755 themeOf for the binding of NFAT and NFκB proteins,"which seem to be crucial for the binding of NFAT and NFκB proteins, respectively"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18714 971-972 . denotes .
T18713 959-971 NNS denotes instructions
T18712 956-958 POS denotes 's
T18711 944-956 NN denotes manufacturer
T18710 940-943 DT denotes the
T18709 937-939 TO denotes to
T18708 927-936 VBG denotes according
T18707 925-926 -RRB- denotes )
T18706 916-925 NNP denotes Pharmacia
T18705 915-916 -LRB- denotes (
T18704 907-914 NNP denotes Columns
T18703 901-906 NNP denotes Micro
T18702 896-900 NNP denotes G-50
T18701 890-895 NN denotes Quant
T18700 884-889 NNP denotes Probe
T18699 878-883 VBG denotes using
T18698 867-877 NN denotes filtration
T18697 863-866 NN denotes gel
T18696 859-862 IN denotes via
T18695 850-858 VBN denotes purified
T18694 845-849 VBD denotes were
T18693 838-844 NNS denotes oligos
T18692 835-837 NNS denotes ds
T18691 831-834 DT denotes the
T18690 829-830 , denotes ,
T18689 819-829 RB denotes Afterwards
T18688 817-818 . denotes .
T18687 805-817 RB denotes respectively
T18686 803-804 , denotes ,
T18685 795-803 NNS denotes proteins
T18684 790-794 NNP denotes NFκB
T18683 786-789 CC denotes and
T18682 781-785 NNP denotes NFAT
T18681 778-780 IN denotes of
T18680 770-777 JJ denotes binding
T18679 766-769 DT denotes the
T18678 762-765 IN denotes for
T18677 754-761 JJ denotes crucial
T18676 751-753 VB denotes be
T18675 748-750 TO denotes to
T18674 743-747 VBP denotes seem
T18673 737-742 WDT denotes which
T18672 735-736 , denotes ,
T18671 726-735 NNS denotes sequences
T18670 721-725 IN denotes with
T18669 711-720 VB denotes interfere
T18668 708-710 TO denotes to
T18667 699-707 VBN denotes reported
T18666 694-698 VBN denotes been
T18665 689-693 VBP denotes have
T18664 687-688 NNP denotes ]
T18663 685-687 CD denotes 55
T18662 684-685 NNP denotes [
T18661 675-683 NN denotes promoter
T18660 670-674 NNP denotes TNFα
T18659 666-669 DT denotes the
T18658 663-665 IN denotes of
T18657 654-662 NN denotes sequence
T18656 644-653 NN denotes consensus
T18655 642-643 NN denotes κ
T18654 638-641 DT denotes the
T18653 635-637 IN denotes in
T18652 631-634 CC denotes and
T18651 629-630 NNP denotes ]
T18650 627-629 CD denotes 29
T18649 626-627 NNP denotes [
T18648 617-625 NN denotes promoter
T18647 612-616 NNP denotes IFNγ
T18646 608-611 DT denotes the
T18645 605-607 IN denotes of
T18644 600-604 NN denotes site
T18643 597-599 NNP denotes P2
T18642 593-596 DT denotes the
T18641 590-592 IN denotes in
T18640 580-589 NNS denotes Mutations
T18639 578-579 . denotes .
T18638 571-578 NN denotes control
T18637 560-570 JJ denotes additional
T18636 557-559 DT denotes an
T18635 554-556 IN denotes as
T18634 549-553 VBN denotes used
T18633 544-548 VBD denotes were
T18632 537-543 NNS denotes oligos
T18631 529-536 VBN denotes mutated
T18630 527-528 , denotes ,
T18629 521-527 NNS denotes oligos
T18628 517-520 DT denotes the
T18627 514-516 IN denotes of
T18626 502-513 NN denotes specificity
T18625 494-501 JJ denotes binding
T18624 490-493 DT denotes the
T18623 485-489 VB denotes test
T18622 482-484 TO denotes To
T18621 480-481 . denotes .
T18620 468-480 NNS denotes instructions
T18619 465-467 POS denotes 's
T18618 453-465 NN denotes manufacturer
T18617 449-452 DT denotes the
T18616 446-448 TO denotes to
T18615 436-445 VBG denotes according
T18614 434-435 -RRB- denotes )
T18613 427-434 NNP denotes Germany
T18612 425-426 , denotes ,
T18611 417-425 NNP denotes Freiburg
T18610 415-416 , denotes ,
T18609 412-415 NNP denotes LKB
T18608 402-411 NNP denotes Pharmacia
T18607 400-401 , denotes ,
T18606 397-400 NNP denotes Kit
T18605 393-396 NNP denotes PNK
T18604 392-393 -LRB- denotes (
T18603 388-391 NNP denotes Kit
T18602 354-387 NNP denotes Ready-To-Go-Polynucleotide-Kinase
T18601 350-353 DT denotes the
T18600 344-349 VBG denotes using
T18599 342-343 -RRB- denotes )
T18595 319-320 , denotes ,
T18594 311-319 NNP denotes Amersham
T18593 309-310 , denotes ,
T18592 302-309 NNP denotes Ci/mmol
T18591 296-301 CD denotes 3,000
T18590 295-296 -LRB- denotes (
T18589 287-294 NNP denotes γ-P-ATP
T18588 286-287 '' denotes '
T18587 285-286 CD denotes 5
T18586 280-284 IN denotes with
T18585 268-279 JJ denotes 32P-labeled
T18584 264-267 CC denotes and
T18583 262-263 -RRB- denotes )
T18582 255-262 NNP denotes Germany
T18581 253-254 , denotes ,
T18580 247-253 NNP denotes Berlin
T18579 245-246 , denotes ,
T18578 238-245 NNP denotes Molbiol
T18577 234-237 NNP denotes TIB
T18576 233-234 -LRB- denotes (
T18575 231-232 , denotes ,
T18574 230-231 -RRB- denotes )
T18573 229-230 CD denotes 1
T18572 223-228 NNP denotes Table
T18571 220-222 IN denotes in
T18570 208-219 VBN denotes illustrated
T18569 207-208 -LRB- denotes (
T18568 200-206 NNS denotes oligos
T18567 198-199 -RRB- denotes )
T18566 196-198 NN denotes ss
T18565 195-196 -LRB- denotes (
T18564 186-194 VBN denotes stranded
T18563 179-185 JJ denotes single
T18562 174-178 IN denotes from
T18561 162-173 VBN denotes synthesised
T18560 157-161 VBD denotes were
T18559 147-156 NNS denotes promoters
T18558 142-146 NNP denotes IL-6
T18557 138-141 CC denotes and
T18556 133-137 NNP denotes IFNγ
T18555 131-132 , denotes ,
T18554 127-131 NNP denotes IL-8
T18553 125-126 , denotes ,
T18552 121-125 NNP denotes TNFα
T18551 117-120 DT denotes the
T18550 112-116 IN denotes from
T18549 110-111 -RRB- denotes )
T18548 104-110 NNS denotes oligos
T18547 103-104 -LRB- denotes (
T18546 86-102 NNS denotes oligonucleotides
T18545 84-85 -RRB- denotes )
T18544 82-84 NNS denotes ds
T18543 81-82 -LRB- denotes (
T18542 65-80 JJ denotes double-stranded
T18541 51-64 JJ denotes complementary
T18540 47-50 DT denotes The
T18539 36-46 NN denotes P-Labeling
T18538 35-36 : denotes -
T18537 32-35 SYM denotes -32
T18536 31-32 '' denotes '
T18535 30-31 CD denotes 5
T18534 26-29 CC denotes and
T18533 24-25 -RRB- denotes )
T18532 18-24 NNP denotes Oligos
T18531 17-18 -LRB- denotes (
T18530 0-16 NNS denotes Oligonucleotides
T18598 335-342 NNP denotes Germany
T18597 333-334 , denotes ,
T18596 321-333 NNP denotes Braunschweig
R12666 T18530 T18530 ROOT Oligonucleotides,Oligonucleotides
R12667 T18531 T18532 punct (,Oligos
R12668 T18532 T18530 appos Oligos,Oligonucleotides
R12669 T18533 T18532 punct ),Oligos
R12670 T18534 T18530 cc and,Oligonucleotides
R12671 T18535 T18539 nummod 5,P-Labeling
R12672 T18536 T18537 punct ',-32
R12673 T18537 T18539 punct -32,P-Labeling
R12674 T18538 T18539 punct -,P-Labeling
R12675 T18539 T18530 conj P-Labeling,Oligonucleotides
R12676 T18540 T18542 det The,double-stranded
R12677 T18541 T18542 amod complementary,double-stranded
R12678 T18542 T18615 nsubj double-stranded,according
R12679 T18543 T18544 punct (,ds
R12680 T18544 T18561 nsubjpass ds,synthesised
R12681 T18545 T18544 punct ),ds
R12682 T18546 T18544 appos oligonucleotides,ds
R12683 T18547 T18548 punct (,oligos
R12684 T18548 T18546 appos oligos,oligonucleotides
R12685 T18549 T18546 punct ),oligonucleotides
R12686 T18550 T18544 prep from,ds
R12687 T18551 T18552 det the,TNFα
R12688 T18552 T18550 pobj TNFα,from
R12689 T18553 T18552 punct ",",TNFα
R12690 T18554 T18552 conj IL-8,TNFα
R12691 T18555 T18554 punct ",",IL-8
R12692 T18556 T18554 conj IFNγ,IL-8
R12693 T18557 T18556 cc and,IFNγ
R12694 T18558 T18556 conj IL-6,IFNγ
R12695 T18559 T18550 pobj promoters,from
R12696 T18560 T18561 auxpass were,synthesised
R12697 T18561 T18542 relcl synthesised,double-stranded
R12698 T18562 T18561 prep from,synthesised
R12699 T18563 T18564 amod single,stranded
R12700 T18564 T18561 conj stranded,synthesised
R12701 T18565 T18566 punct (,ss
R12702 T18566 T18564 appos ss,stranded
R12703 T18567 T18566 punct ),ss
R12704 T18568 T18566 appos oligos,ss
R12705 T18569 T18570 punct (,illustrated
R12706 T18570 T18568 acl illustrated,oligos
R12707 T18571 T18570 prep in,illustrated
R12708 T18572 T18571 pobj Table,in
R12709 T18573 T18572 nummod 1,Table
R12710 T18574 T18566 punct ),ss
R12711 T18575 T18564 punct ",",stranded
R12712 T18576 T18561 punct (,synthesised
R12713 T18577 T18578 compound TIB,Molbiol
R12714 T18578 T18600 nsubj Molbiol,using
R12715 T18579 T18578 punct ",",Molbiol
R12716 T18580 T18578 conj Berlin,Molbiol
R12717 T18581 T18580 punct ",",Berlin
R12718 T18582 T18580 conj Germany,Berlin
R12719 T18583 T18582 punct ),Germany
R12720 T18584 T18578 cc and,Molbiol
R12721 T18585 T18578 conj 32P-labeled,Molbiol
R12722 T18586 T18585 prep with,32P-labeled
R12723 T18587 T18589 nummod 5,γ-P-ATP
R12724 T18588 T18589 punct ',γ-P-ATP
R12725 T18589 T18586 pobj γ-P-ATP,with
R12726 T18590 T18592 punct (,Ci/mmol
R12727 T18591 T18592 nummod "3,000",Ci/mmol
R12728 T18592 T18589 appos Ci/mmol,γ-P-ATP
R12729 T18593 T18592 punct ",",Ci/mmol
R12730 T18594 T18592 conj Amersham,Ci/mmol
R12731 T18595 T18594 punct ",",Amersham
R12732 T18596 T18594 conj Braunschweig,Amersham
R12733 T18597 T18596 punct ",",Braunschweig
R12734 T18598 T18596 conj Germany,Braunschweig
R12735 T18599 T18589 punct ),γ-P-ATP
R12736 T18600 T18561 advcl using,synthesised
R12737 T18601 T18603 det the,Kit
R12738 T18602 T18603 compound Ready-To-Go-Polynucleotide-Kinase,Kit
R12739 T18603 T18600 dobj Kit,using
R12740 T18604 T18606 punct (,Kit
R12741 T18605 T18606 compound PNK,Kit
R12742 T18606 T18603 appos Kit,Kit
R12743 T18607 T18606 punct ",",Kit
R12744 T18608 T18609 compound Pharmacia,LKB
R12745 T18609 T18606 conj LKB,Kit
R12746 T18610 T18609 punct ",",LKB
R12747 T18611 T18609 conj Freiburg,LKB
R12748 T18612 T18611 punct ",",Freiburg
R12749 T18613 T18611 conj Germany,Freiburg
R12750 T18614 T18603 punct ),Kit
R12751 T18615 T18615 ROOT according,according
R12752 T18616 T18615 prep to,according
R12753 T18617 T18618 det the,manufacturer
R12754 T18618 T18620 poss manufacturer,instructions
R12755 T18619 T18618 case 's,manufacturer
R12756 T18620 T18616 pobj instructions,to
R12757 T18621 T18615 punct .,according
R12758 T18622 T18623 aux To,test
R12759 T18623 T18634 advcl test,used
R12760 T18624 T18626 det the,specificity
R12761 T18625 T18626 amod binding,specificity
R12762 T18626 T18623 dobj specificity,test
R12763 T18627 T18626 prep of,specificity
R12764 T18628 T18629 det the,oligos
R12765 T18629 T18627 pobj oligos,of
R12766 T18630 T18634 punct ",",used
R12767 T18631 T18632 amod mutated,oligos
R12768 T18632 T18634 nsubjpass oligos,used
R12769 T18633 T18634 auxpass were,used
R12770 T18634 T18634 ROOT used,used
R12771 T18635 T18634 prep as,used
R12772 T18636 T18638 det an,control
R12773 T18637 T18638 amod additional,control
R12774 T18638 T18635 pobj control,as
R12775 T18639 T18634 punct .,used
R12776 T18640 T18667 nsubjpass Mutations,reported
R12777 T18641 T18640 prep in,Mutations
R12778 T18642 T18644 det the,site
R12779 T18643 T18644 compound P2,site
R12780 T18644 T18641 pobj site,in
R12781 T18645 T18644 prep of,site
R12782 T18646 T18648 det the,promoter
R12783 T18647 T18648 compound IFNγ,promoter
R12784 T18648 T18645 pobj promoter,of
R12785 T18649 T18651 nmod [,]
R12786 T18650 T18651 nummod 29,]
R12787 T18651 T18648 appos ],promoter
R12788 T18652 T18641 cc and,in
R12789 T18653 T18641 conj in,in
R12790 T18654 T18657 det the,sequence
R12791 T18655 T18657 compound κ,sequence
R12792 T18656 T18657 compound consensus,sequence
R12793 T18657 T18653 pobj sequence,in
R12794 T18658 T18657 prep of,sequence
R12795 T18659 T18661 det the,promoter
R12796 T18660 T18661 compound TNFα,promoter
R12797 T18661 T18658 pobj promoter,of
R12798 T18662 T18664 nmod [,]
R12799 T18663 T18664 nummod 55,]
R12800 T18664 T18661 appos ],promoter
R12801 T18665 T18667 aux have,reported
R12802 T18666 T18667 auxpass been,reported
R12803 T18667 T18667 ROOT reported,reported
R12804 T18668 T18669 aux to,interfere
R12805 T18669 T18667 xcomp interfere,reported
R12806 T18670 T18669 prep with,interfere
R12807 T18671 T18670 pobj sequences,with
R12808 T18672 T18671 punct ",",sequences
R12809 T18673 T18674 nsubj which,seem
R12810 T18674 T18671 relcl seem,sequences
R12811 T18675 T18676 aux to,be
R12812 T18676 T18674 xcomp be,seem
R12813 T18677 T18676 acomp crucial,be
R12814 T18678 T18677 prep for,crucial
R12815 T18679 T18680 det the,binding
R12816 T18680 T18678 pobj binding,for
R12817 T18681 T18680 prep of,binding
R12818 T18682 T18685 nmod NFAT,proteins
R12819 T18683 T18682 cc and,NFAT
R12820 T18684 T18682 conj NFκB,NFAT
R12821 T18685 T18681 pobj proteins,of
R12822 T18686 T18676 punct ",",be
R12823 T18687 T18676 advmod respectively,be
R12824 T18688 T18667 punct .,reported
R12825 T18689 T18695 advmod Afterwards,purified
R12826 T18690 T18695 punct ",",purified
R12827 T18691 T18693 det the,oligos
R12828 T18692 T18693 compound ds,oligos
R12829 T18693 T18695 nsubjpass oligos,purified
R12830 T18694 T18695 auxpass were,purified
R12831 T18695 T18695 ROOT purified,purified
R12832 T18696 T18695 prep via,purified
R12833 T18697 T18698 compound gel,filtration
R12834 T18698 T18696 pobj filtration,via
R12835 T18699 T18695 advcl using,purified
R12836 T18700 T18701 compound Probe,Quant
R12837 T18701 T18704 compound Quant,Columns
R12838 T18702 T18704 compound G-50,Columns
R12839 T18703 T18704 compound Micro,Columns
R12840 T18704 T18699 dobj Columns,using
R12841 T18705 T18704 punct (,Columns
R12842 T18706 T18704 appos Pharmacia,Columns
R12843 T18707 T18704 punct ),Columns
R12844 T18708 T18695 prep according,purified
R12845 T18709 T18708 prep to,according
R12846 T18710 T18711 det the,manufacturer
R12847 T18711 T18713 poss manufacturer,instructions
R12848 T18712 T18711 case 's,manufacturer
R12849 T18713 T18709 pobj instructions,to
R12850 T18714 T18695 punct .,purified

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18512 754-761 Positive_regulation denotes crucial
T18511 754-761 Positive_regulation denotes crucial
T18510 770-777 Binding denotes binding
T18509 770-777 Binding denotes binding
T18508 617-625 Entity denotes promoter
T18507 790-803 Protein denotes NFκB proteins
T18506 781-785 Protein denotes NFAT
T18505 670-683 Protein denotes TNFα promoter
T18504 642-662 Protein denotes κ consensus sequence
T18503 612-616 Protein denotes IFNγ
T18502 597-604 Protein denotes P2 site
T18501 393-396 Protein denotes PNK
T18500 388-391 Protein denotes Kit
T18499 127-156 Protein denotes IL-8, IFNγ and IL-6 promoters
T18498 121-125 Protein denotes TNFα
R12657 T18502 T18508 partOf P2 site,promoter
R12658 T18503 T18508 partOf IFNγ,promoter
R12659 T18506 T18509 themeOf NFAT,binding
R12660 T18507 T18510 themeOf NFκB proteins,binding
R12661 T18509 T18511 themeOf binding,crucial
R12662 T18510 T18512 themeOf binding,crucial

testone

Id Subject Object Predicate Lexical cue
T18250 770-777 Binding denotes binding
T18249 754-761 Positive_regulation denotes crucial
T18248 580-589 Negative_regulation denotes Mutations
T18247 494-501 Binding denotes binding
T18246 781-785 Protein denotes NFAT
T18245 670-674 Protein denotes TNFα
T18244 612-616 Protein denotes IFNγ
T18243 142-146 Protein denotes IL-6
T18242 133-137 Protein denotes IFNγ
T18241 127-131 Protein denotes IL-8
T18240 121-125 Protein denotes TNFα
R12462 T18246 T18250 themeOf NFAT,binding
R12463 T18250 T18249 themeOf binding,crucial

test3

Id Subject Object Predicate Lexical cue
T18260 133-137 Protein denotes IFNγ
T18259 127-131 Protein denotes IL-8
T18258 121-125 Protein denotes TNFα
T18257 781-785 Protein denotes NFAT
T18256 670-674 Protein denotes TNFα
T18255 612-616 Protein denotes IFNγ
T18254 142-146 Protein denotes IL-6
T18253 133-137 Protein denotes IFNγ
T18252 127-131 Protein denotes IL-8
T18251 121-125 Protein denotes TNFα
T18266 781-785 Protein denotes NFAT
T18265 770-777 Binding denotes binding
T18264 754-761 Positive_regulation denotes crucial
T18263 670-674 Protein denotes TNFα
T18262 612-616 Protein denotes IFNγ
T18261 142-146 Protein denotes IL-6
R12464 T18265 T18264 themeOf binding,crucial
R12465 T18266 T18265 themeOf NFAT,binding