PMC:1472690 / 29449-29830
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13817 | 379-380 | -RRB- | denotes | ] |
T13816 | 374-379 | CD | denotes | 41,42 |
T13815 | 373-374 | -LRB- | denotes | [ |
T13814 | 365-372 | NN | denotes | binding |
T13813 | 362-364 | IN | denotes | in |
T13812 | 350-361 | NN | denotes | differences |
T13811 | 347-349 | TO | denotes | to |
T13810 | 339-346 | VB | denotes | leading |
T13809 | 330-338 | RB | denotes | probably |
T13808 | 328-329 | -COMMA- | denotes | , |
T13807 | 327-328 | -RRB- | denotes | ) |
T13806 | 326-327 | CD | denotes | 1 |
T13805 | 320-325 | JJ | denotes | Table |
T13804 | 316-319 | VB | denotes | see |
T13803 | 314-315 | -COMMA- | denotes | , |
T13802 | 309-314 | NN | denotes | motif |
T13801 | 304-308 | NN | denotes | TNFα |
T13800 | 300-303 | DT | denotes | the |
T13799 | 297-299 | IN | denotes | in |
T13798 | 295-296 | NN | denotes | C |
T13797 | 285-294 | VB | denotes | conserved |
T13796 | 281-284 | DT | denotes | the |
T13795 | 278-280 | IN | denotes | of |
T13794 | 270-277 | RB | denotes | instead |
T13793 | 267-269 | CD | denotes | 10 |
T13792 | 258-266 | NN | denotes | position |
T13791 | 255-257 | IN | denotes | on |
T13790 | 253-254 | NN | denotes | T |
T13789 | 251-252 | DT | denotes | a |
T13788 | 242-250 | VB | denotes | contains |
T13787 | 236-241 | NN | denotes | motif |
T13786 | 229-235 | NN | denotes | IL-1RA |
T13785 | 225-228 | DT | denotes | the |
T13784 | 219-224 | NN | denotes | NFκB3 |
T13783 | 215-218 | IN | denotes | for |
T13782 | 214-215 | -LRB- | denotes | ( |
T13781 | 205-213 | NN | denotes | promoter |
T13780 | 198-204 | NN | denotes | IL-1RA |
T13779 | 194-197 | DT | denotes | the |
T13778 | 190-193 | CC | denotes | and |
T13777 | 185-189 | NN | denotes | TNFα |
T13776 | 181-184 | DT | denotes | the |
T13775 | 173-180 | IN | denotes | between |
T13774 | 167-172 | NN | denotes | motif |
T13773 | 159-166 | NN | denotes | binding |
T13772 | 154-158 | NN | denotes | NFκB |
T13771 | 144-153 | JJ | denotes | decameric |
T13770 | 140-143 | DT | denotes | the |
T13769 | 133-139 | IN | denotes | within |
T13768 | 131-132 | -RRB- | denotes | ) |
T13767 | 129-131 | CD | denotes | 10 |
T13766 | 127-128 | -COMMA- | denotes | , |
T13765 | 126-127 | CD | denotes | 3 |
T13764 | 124-125 | -COMMA- | denotes | , |
T13763 | 123-124 | CD | denotes | 2 |
T13762 | 121-122 | -COMMA- | denotes | , |
T13761 | 120-121 | CD | denotes | 1 |
T13760 | 119-120 | -SHARP- | denotes | # |
T13759 | 118-119 | -LRB- | denotes | ( |
T13758 | 106-117 | NN | denotes | nucleotides |
T13757 | 96-105 | VB | denotes | conserved |
T13756 | 93-95 | CC | denotes | or |
T13755 | 84-92 | NN | denotes | subunits |
T13754 | 79-83 | NN | denotes | NFκB |
T13753 | 72-78 | DT | denotes | either |
T13752 | 69-71 | IN | denotes | in |
T13751 | 57-68 | NN | denotes | differences |
T13750 | 54-56 | IN | denotes | by |
T13749 | 44-53 | VB | denotes | explained |
T13748 | 41-43 | VB | denotes | be |
T13747 | 35-40 | MD | denotes | could |
T13746 | 30-34 | NN | denotes | data |
T13745 | 16-29 | JJ | denotes | contradictory |
T13744 | 6-15 | RB | denotes | seemingly |
T13743 | 0-5 | DT | denotes | These |
R8875 | T13774 | T13769 | arg2Of | motif,within |
R8876 | T13774 | T13770 | arg1Of | motif,the |
R8877 | T13774 | T13771 | arg1Of | motif,decameric |
R8878 | T13774 | T13772 | arg1Of | motif,NFκB |
R8879 | T13774 | T13773 | arg1Of | motif,binding |
R8881 | T13777 | T13776 | arg1Of | TNFα,the |
R8882 | T13777 | T13778 | arg1Of | TNFα,and |
R8884 | T13778 | T13775 | arg2Of | and,between |
R8886 | T13781 | T13778 | arg2Of | promoter,and |
R8887 | T13781 | T13779 | arg1Of | promoter,the |
R8888 | T13781 | T13780 | arg1Of | promoter,IL-1RA |
R8889 | T13784 | T13783 | arg2Of | NFκB3,for |
R8891 | T13787 | T13783 | arg1Of | motif,for |
R8892 | T13787 | T13785 | arg1Of | motif,the |
R8893 | T13787 | T13786 | arg1Of | motif,IL-1RA |
R8894 | T13787 | T13788 | arg1Of | motif,contains |
R8895 | T13787 | T13804 | arg1Of | motif,see |
R8896 | T13788 | T13803 | arg1Of | contains,"," |
R8897 | T13790 | T13789 | arg1Of | T,a |
R8898 | T13790 | T13791 | arg1Of | T,on |
R8899 | T13790 | T13795 | arg1Of | T,of |
R8902 | T13792 | T13791 | arg2Of | position,on |
R8903 | T13792 | T13793 | arg1Of | position,10 |
R8904 | T13795 | T13788 | arg2Of | of,contains |
R8905 | T13795 | T13794 | arg1Of | of,instead |
R8908 | T13798 | T13795 | arg2Of | C,of |
R8909 | T13798 | T13796 | arg1Of | C,the |
R8910 | T13798 | T13797 | arg2Of | C,conserved |
R8911 | T13798 | T13799 | arg1Of | C,in |
R8912 | T13802 | T13799 | arg2Of | motif,in |
R8913 | T13802 | T13800 | arg1Of | motif,the |
R8914 | T13802 | T13801 | arg1Of | motif,TNFα |
R8915 | T13803 | T13782 | arg2Of | ",",( |
R8916 | T13804 | T13803 | arg2Of | see,"," |
R8918 | T13806 | T13804 | arg2Of | 1,see |
R8919 | T13806 | T13805 | arg1Of | 1,Table |
R8920 | T13807 | T13782 | arg3Of | ),( |
R8922 | T13810 | T13809 | arg1Of | leading,probably |
R8923 | T13810 | T13811 | arg1Of | leading,to |
R8924 | T13810 | T13815 | arg1Of | leading,[ |
R8925 | T13812 | T13811 | arg2Of | differences,to |
R8926 | T13812 | T13813 | arg1Of | differences,in |
R8927 | T13814 | T13813 | arg2Of | binding,in |
R8930 | T13816 | T13815 | arg2Of | "41,42",[ |
R8932 | T13817 | T13815 | arg3Of | ],[ |
R9050 | T13745 | T13744 | arg1Of | contradictory,seemingly |
R9055 | T13746 | T13743 | arg1Of | data,These |
R9063 | T13746 | T13745 | arg1Of | data,contradictory |
R9065 | T13746 | T13747 | arg1Of | data,could |
R9066 | T13746 | T13748 | arg1Of | data,be |
R9067 | T13746 | T13749 | arg2Of | data,explained |
R9075 | T13746 | T13810 | arg1Of | data,leading |
R9079 | T13749 | T13747 | arg2Of | explained,could |
R9089 | T13749 | T13748 | arg2Of | explained,be |
R9096 | T13749 | T13808 | arg1Of | explained,"," |
R9099 | T13749 | T13810 | modOf | explained,leading |
R9101 | T13751 | T13752 | arg1Of | differences,in |
R9106 | T13751 | T13756 | arg1Of | differences,or |
R9108 | T13755 | T13752 | arg2Of | subunits,in |
R9118 | T13755 | T13753 | arg1Of | subunits,either |
R9119 | T13755 | T13754 | arg1Of | subunits,NFκB |
R9120 | T13756 | T13749 | arg1Of | or,explained |
R9127 | T13756 | T13750 | arg2Of | or,by |
R9131 | T13756 | T13769 | arg1Of | or,within |
R9132 | T13756 | T13775 | arg1Of | or,between |
R9133 | T13756 | T13782 | arg1Of | or,( |
R9134 | T13758 | T13756 | arg2Of | nucleotides,or |
R9135 | T13758 | T13757 | arg2Of | nucleotides,conserved |
R9136 | T13758 | T13759 | arg1Of | nucleotides,( |
R9137 | T13761 | T13762 | arg1Of | 1,"," |
R9147 | T13762 | T13764 | arg1Of | ",","," |
R9151 | T13763 | T13762 | arg2Of | 2,"," |
R9155 | T13764 | T13759 | arg2Of | ",",( |
R9157 | T13764 | T13760 | arg1Of | ",",# |
R9159 | T13764 | T13766 | arg1Of | ",","," |
R9160 | T13765 | T13764 | arg2Of | 3,"," |
R9164 | T13767 | T13766 | arg2Of | 10,"," |
R9170 | T13768 | T13759 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12387 | 198-204 | Protein | denotes | IL-1RA |
T12386 | 185-189 | Protein | denotes | TNFα |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14295 | 304-308 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
T14294 | 185-189 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
T14270 | 229-235 | http://www.uniprot.org/uniprot/P18510 | denotes | IL-1RA |
T14269 | 198-204 | http://www.uniprot.org/uniprot/P18510 | denotes | IL-1RA |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12545 | 365-372 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
T12544 | 159-166 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11877 | 0-381 | Sentence | denotes | These seemingly contradictory data could be explained by differences in either NFκB subunits or conserved nucleotides (#1, 2, 3, 10) within the decameric NFκB binding motif between the TNFα and the IL-1RA promoter (for NFκB3 the IL-1RA motif contains a T on position 10 instead of the conserved C in the TNFα motif, see Table 1), probably leading to differences in binding [41,42]. |
T207 | 0-381 | Sentence | denotes | These seemingly contradictory data could be explained by differences in either NFκB subunits or conserved nucleotides (#1, 2, 3, 10) within the decameric NFκB binding motif between the TNFα and the IL-1RA promoter (for NFκB3 the IL-1RA motif contains a T on position 10 instead of the conserved C in the TNFα motif, see Table 1), probably leading to differences in binding [41,42]. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12766 | 198-204 | Protein | denotes | IL-1RA |
T12765 | 185-189 | Protein | denotes | TNFα |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16604 | 198-204 | Protein | denotes | IL-1RA |
T16603 | 185-189 | Protein | denotes | TNFα |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14412 | 198-204 | Protein | denotes | IL-1RA |
T14411 | 185-189 | Protein | denotes | TNFα |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14672 | 159-166 | Binding | denotes | binding |
T14587 | 198-204 | Protein | denotes | IL-1RA |
T14586 | 185-189 | Protein | denotes | TNFα |
R9640 | T14586 | T14672 | themeOf | TNFα,binding |
R9642 | T14587 | T14672 | themeOf | IL-1RA,binding |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16933 | 96-117 | Binding | denotes | conserved nucleotides |
T16904 | 96-117 | Entity | denotes | conserved nucleotides |
T16836 | 251-269 | Entity | denotes | a T on position 10 |
T16819 | 304-308 | Protein | denotes | TNFα |
T16777 | 140-158 | Protein | denotes | the decameric NFκB |
T16762 | 194-213 | Entity | denotes | the IL-1RA promoter |
T16757 | 258-269 | Entity | denotes | position 10 |
T16735 | 181-189 | Protein | denotes | the TNFα |
T16724 | 198-204 | Protein | denotes | IL-1RA |
T16709 | 79-83 | Protein | denotes | NFκB |
T16690 | 229-235 | Protein | denotes | IL-1RA |
R11449 | T16762 | T16724 | partOf | the IL-1RA promoter,IL-1RA |
R11494 | T16904 | T16933 | themeOf | conserved nucleotides,conserved nucleotides |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15883 | 380-381 | . | denotes | . |
T15882 | 379-380 | NNP | denotes | ] |
T15881 | 374-379 | CD | denotes | 41,42 |
T15880 | 373-374 | NNP | denotes | [ |
T15879 | 365-372 | JJ | denotes | binding |
T15878 | 362-364 | IN | denotes | in |
T15877 | 350-361 | NNS | denotes | differences |
T15876 | 347-349 | TO | denotes | to |
T15875 | 339-346 | VBG | denotes | leading |
T15874 | 330-338 | RB | denotes | probably |
T15873 | 328-329 | , | denotes | , |
T15872 | 327-328 | -RRB- | denotes | ) |
T15871 | 326-327 | CD | denotes | 1 |
T15870 | 320-325 | NNP | denotes | Table |
T15869 | 316-319 | VBP | denotes | see |
T15868 | 314-315 | , | denotes | , |
T15867 | 309-314 | NN | denotes | motif |
T15866 | 304-308 | NNP | denotes | TNFα |
T15865 | 300-303 | DT | denotes | the |
T15864 | 297-299 | IN | denotes | in |
T15863 | 295-296 | NNP | denotes | C |
T15862 | 285-294 | JJ | denotes | conserved |
T15861 | 281-284 | DT | denotes | the |
T15860 | 278-280 | IN | denotes | of |
T15859 | 270-277 | RB | denotes | instead |
T15858 | 267-269 | CD | denotes | 10 |
T15857 | 258-266 | NN | denotes | position |
T15856 | 255-257 | IN | denotes | on |
T15855 | 253-254 | NN | denotes | T |
T15854 | 251-252 | DT | denotes | a |
T15853 | 242-250 | VBZ | denotes | contains |
T15852 | 236-241 | NN | denotes | motif |
T15851 | 229-235 | NNP | denotes | IL-1RA |
T15850 | 225-228 | DT | denotes | the |
T15849 | 219-224 | NNP | denotes | NFκB3 |
T15848 | 215-218 | IN | denotes | for |
T15847 | 214-215 | -LRB- | denotes | ( |
T15846 | 205-213 | NN | denotes | promoter |
T15845 | 198-204 | NN | denotes | IL-1RA |
T15844 | 194-197 | DT | denotes | the |
T15843 | 190-193 | CC | denotes | and |
T15842 | 185-189 | NNP | denotes | TNFα |
T15841 | 181-184 | DT | denotes | the |
T15840 | 173-180 | IN | denotes | between |
T15839 | 167-172 | NN | denotes | motif |
T15838 | 159-166 | JJ | denotes | binding |
T15837 | 154-158 | NNP | denotes | NFκB |
T15836 | 144-153 | JJ | denotes | decameric |
T15835 | 140-143 | DT | denotes | the |
T15834 | 133-139 | IN | denotes | within |
T15833 | 131-132 | -RRB- | denotes | ) |
T15832 | 129-131 | CD | denotes | 10 |
T15831 | 127-128 | , | denotes | , |
T15830 | 126-127 | CD | denotes | 3 |
T15829 | 124-125 | , | denotes | , |
T15828 | 123-124 | CD | denotes | 2 |
T15827 | 121-122 | , | denotes | , |
T15826 | 120-121 | CD | denotes | 1 |
T15825 | 119-120 | # | denotes | # |
T15824 | 118-119 | -LRB- | denotes | ( |
T15823 | 106-117 | NNS | denotes | nucleotides |
T15822 | 96-105 | VBN | denotes | conserved |
T15821 | 93-95 | CC | denotes | or |
T15820 | 84-92 | NNS | denotes | subunits |
T15819 | 79-83 | NNP | denotes | NFκB |
T15818 | 72-78 | DT | denotes | either |
T15817 | 69-71 | IN | denotes | in |
T15816 | 57-68 | NNS | denotes | differences |
T15815 | 54-56 | IN | denotes | by |
T15814 | 44-53 | VBN | denotes | explained |
T15813 | 41-43 | VB | denotes | be |
T15812 | 35-40 | MD | denotes | could |
T15811 | 30-34 | NNS | denotes | data |
T15810 | 16-29 | JJ | denotes | contradictory |
T15809 | 6-15 | RB | denotes | seemingly |
T15808 | 0-5 | DT | denotes | These |
R10668 | T15808 | T15811 | det | These,data |
R10669 | T15809 | T15810 | advmod | seemingly,contradictory |
R10671 | T15810 | T15811 | amod | contradictory,data |
R10672 | T15811 | T15814 | nsubjpass | data,explained |
R10674 | T15812 | T15814 | aux | could,explained |
R10675 | T15813 | T15814 | auxpass | be,explained |
R10676 | T15814 | T15814 | ROOT | explained,explained |
R10679 | T15815 | T15814 | agent | by,explained |
R10680 | T15816 | T15815 | pobj | differences,by |
R10682 | T15817 | T15816 | prep | in,differences |
R10683 | T15818 | T15820 | preconj | either,subunits |
R10685 | T15819 | T15820 | compound | NFκB,subunits |
R10686 | T15820 | T15817 | pobj | subunits,in |
R10687 | T15821 | T15816 | cc | or,differences |
R10689 | T15822 | T15823 | amod | conserved,nucleotides |
R10690 | T15823 | T15816 | conj | nucleotides,differences |
R10691 | T15824 | T15853 | punct | (,contains |
R10693 | T15825 | T15853 | nsubj | #,contains |
R10694 | T15826 | T15825 | nummod | 1,# |
R10695 | T15827 | T15832 | punct | ",",10 |
R10697 | T15828 | T15832 | dep | 2,10 |
R10698 | T15829 | T15830 | punct | ",",3 |
R10699 | T15830 | T15828 | prep | 3,2 |
R10701 | T15831 | T15832 | punct | ",",10 |
R10702 | T15832 | T15825 | appos | 10,# |
R10703 | T15833 | T15825 | punct | ),# |
R10705 | T15834 | T15825 | prep | within,# |
R10706 | T15835 | T15839 | det | the,motif |
R10707 | T15836 | T15839 | amod | decameric,motif |
R10709 | T15837 | T15839 | amod | NFκB,motif |
R10710 | T15838 | T15839 | amod | binding,motif |
R10712 | T15839 | T15834 | pobj | motif,within |
R10713 | T15840 | T15839 | prep | between,motif |
R10714 | T15841 | T15842 | det | the,TNFα |
R10717 | T15842 | T15840 | pobj | TNFα,between |
R10718 | T15843 | T15842 | cc | and,TNFα |
R10719 | T15844 | T15846 | det | the,promoter |
R10721 | T15845 | T15846 | compound | IL-1RA,promoter |
R10722 | T15846 | T15842 | conj | promoter,TNFα |
R10723 | T15847 | T15846 | punct | (,promoter |
R10725 | T15848 | T15846 | prep | for,promoter |
R10726 | T15849 | T15848 | pobj | NFκB3,for |
R10728 | T15850 | T15852 | det | the,motif |
R10729 | T15851 | T15852 | compound | IL-1RA,motif |
R10731 | T15852 | T15846 | conj | motif,promoter |
R10732 | T15853 | T15814 | parataxis | contains,explained |
R10733 | T15854 | T15855 | det | a,T |
R10735 | T15855 | T15853 | dobj | T,contains |
R10736 | T15856 | T15855 | prep | on,T |
R10737 | T15857 | T15856 | pobj | position,on |
R10739 | T15858 | T15857 | nummod | 10,position |
R10740 | T15859 | T15860 | advmod | instead,of |
R10741 | T15860 | T15857 | cc | of,position |
R10743 | T15861 | T15863 | det | the,C |
R10744 | T15862 | T15863 | amod | conserved,C |
R10746 | T15863 | T15855 | conj | C,T |
R10747 | T15864 | T15863 | prep | in,C |
R10749 | T15865 | T15867 | det | the,motif |
R10750 | T15866 | T15867 | compound | TNFα,motif |
R10752 | T15867 | T15864 | pobj | motif,in |
R10753 | T15868 | T15853 | punct | ",",contains |
R10754 | T15869 | T15814 | conj | see,explained |
R10756 | T15870 | T15869 | dobj | Table,see |
R10757 | T15871 | T15870 | nummod | 1,Table |
R10758 | T15872 | T15869 | punct | ),see |
R10760 | T15873 | T15814 | punct | ",",explained |
R10761 | T15874 | T15875 | advmod | probably,leading |
R10762 | T15875 | T15814 | advcl | leading,explained |
R10763 | T15876 | T15875 | prep | to,leading |
R10764 | T15877 | T15876 | pobj | differences,to |
R10765 | T15878 | T15877 | prep | in,differences |
R10767 | T15879 | T15882 | amod | binding,] |
R10768 | T15880 | T15882 | compound | [,] |
R10770 | T15881 | T15882 | compound | "41,42",] |
R10771 | T15882 | T15878 | pobj | ],in |
R10772 | T15883 | T15814 | punct | .,explained |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12478 | 304-314 | Protein | denotes | TNFα motif |
T12477 | 229-241 | Protein | denotes | IL-1RA motif |
T12476 | 219-224 | Protein | denotes | NFκB3 |
T12475 | 198-213 | Protein | denotes | IL-1RA promoter |
T12474 | 185-189 | Protein | denotes | TNFα |
T12473 | 154-158 | Protein | denotes | NFκB |
T12472 | 79-92 | Protein | denotes | NFκB subunits |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11436 | 198-204 | Protein | denotes | IL-1RA |
T11435 | 185-189 | Protein | denotes | TNFα |
T11531 | 365-372 | Binding | denotes | binding |
T11530 | 205-213 | Entity | denotes | promoter |
T11529 | 154-172 | Entity | denotes | NFκB binding motif |
T11528 | 144-153 | Entity | denotes | decameric |
R7470 | T11436 | T11531 | themeOf | IL-1RA,binding |
R7520 | T11529 | T11435 | partOf | NFκB binding motif,TNFα |
R7521 | T11529 | T11436 | partOf | NFκB binding motif,IL-1RA |
R7522 | T11530 | T11436 | partOf | promoter,IL-1RA |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11805 | 198-204 | Protein | denotes | IL-1RA |
T11804 | 185-189 | Protein | denotes | TNFα |
T11639 | 198-204 | Protein | denotes | IL-1RA |
T11638 | 185-189 | Protein | denotes | TNFα |