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PMC:1472690 / 29449-29830 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13817 379-380 -RRB- denotes ]
T13816 374-379 CD denotes 41,42
T13815 373-374 -LRB- denotes [
T13814 365-372 NN denotes binding
T13813 362-364 IN denotes in
T13812 350-361 NN denotes differences
T13811 347-349 TO denotes to
T13810 339-346 VB denotes leading
T13809 330-338 RB denotes probably
T13808 328-329 -COMMA- denotes ,
T13807 327-328 -RRB- denotes )
T13806 326-327 CD denotes 1
T13805 320-325 JJ denotes Table
T13804 316-319 VB denotes see
T13803 314-315 -COMMA- denotes ,
T13802 309-314 NN denotes motif
T13801 304-308 NN denotes TNFα
T13800 300-303 DT denotes the
T13799 297-299 IN denotes in
T13798 295-296 NN denotes C
T13797 285-294 VB denotes conserved
T13796 281-284 DT denotes the
T13795 278-280 IN denotes of
T13794 270-277 RB denotes instead
T13793 267-269 CD denotes 10
T13792 258-266 NN denotes position
T13791 255-257 IN denotes on
T13790 253-254 NN denotes T
T13789 251-252 DT denotes a
T13788 242-250 VB denotes contains
T13787 236-241 NN denotes motif
T13786 229-235 NN denotes IL-1RA
T13785 225-228 DT denotes the
T13784 219-224 NN denotes NFκB3
T13783 215-218 IN denotes for
T13782 214-215 -LRB- denotes (
T13781 205-213 NN denotes promoter
T13780 198-204 NN denotes IL-1RA
T13779 194-197 DT denotes the
T13778 190-193 CC denotes and
T13777 185-189 NN denotes TNFα
T13776 181-184 DT denotes the
T13775 173-180 IN denotes between
T13774 167-172 NN denotes motif
T13773 159-166 NN denotes binding
T13772 154-158 NN denotes NFκB
T13771 144-153 JJ denotes decameric
T13770 140-143 DT denotes the
T13769 133-139 IN denotes within
T13768 131-132 -RRB- denotes )
T13767 129-131 CD denotes 10
T13766 127-128 -COMMA- denotes ,
T13765 126-127 CD denotes 3
T13764 124-125 -COMMA- denotes ,
T13763 123-124 CD denotes 2
T13762 121-122 -COMMA- denotes ,
T13761 120-121 CD denotes 1
T13760 119-120 -SHARP- denotes #
T13759 118-119 -LRB- denotes (
T13758 106-117 NN denotes nucleotides
T13757 96-105 VB denotes conserved
T13756 93-95 CC denotes or
T13755 84-92 NN denotes subunits
T13754 79-83 NN denotes NFκB
T13753 72-78 DT denotes either
T13752 69-71 IN denotes in
T13751 57-68 NN denotes differences
T13750 54-56 IN denotes by
T13749 44-53 VB denotes explained
T13748 41-43 VB denotes be
T13747 35-40 MD denotes could
T13746 30-34 NN denotes data
T13745 16-29 JJ denotes contradictory
T13744 6-15 RB denotes seemingly
T13743 0-5 DT denotes These
R8875 T13774 T13769 arg2Of motif,within
R8876 T13774 T13770 arg1Of motif,the
R8877 T13774 T13771 arg1Of motif,decameric
R8878 T13774 T13772 arg1Of motif,NFκB
R8879 T13774 T13773 arg1Of motif,binding
R8881 T13777 T13776 arg1Of TNFα,the
R8882 T13777 T13778 arg1Of TNFα,and
R8884 T13778 T13775 arg2Of and,between
R8886 T13781 T13778 arg2Of promoter,and
R8887 T13781 T13779 arg1Of promoter,the
R8888 T13781 T13780 arg1Of promoter,IL-1RA
R8889 T13784 T13783 arg2Of NFκB3,for
R8891 T13787 T13783 arg1Of motif,for
R8892 T13787 T13785 arg1Of motif,the
R8893 T13787 T13786 arg1Of motif,IL-1RA
R8894 T13787 T13788 arg1Of motif,contains
R8895 T13787 T13804 arg1Of motif,see
R8896 T13788 T13803 arg1Of contains,","
R8897 T13790 T13789 arg1Of T,a
R8898 T13790 T13791 arg1Of T,on
R8899 T13790 T13795 arg1Of T,of
R8902 T13792 T13791 arg2Of position,on
R8903 T13792 T13793 arg1Of position,10
R8904 T13795 T13788 arg2Of of,contains
R8905 T13795 T13794 arg1Of of,instead
R8908 T13798 T13795 arg2Of C,of
R8909 T13798 T13796 arg1Of C,the
R8910 T13798 T13797 arg2Of C,conserved
R8911 T13798 T13799 arg1Of C,in
R8912 T13802 T13799 arg2Of motif,in
R8913 T13802 T13800 arg1Of motif,the
R8914 T13802 T13801 arg1Of motif,TNFα
R8915 T13803 T13782 arg2Of ",",(
R8916 T13804 T13803 arg2Of see,","
R8918 T13806 T13804 arg2Of 1,see
R8919 T13806 T13805 arg1Of 1,Table
R8920 T13807 T13782 arg3Of ),(
R8922 T13810 T13809 arg1Of leading,probably
R8923 T13810 T13811 arg1Of leading,to
R8924 T13810 T13815 arg1Of leading,[
R8925 T13812 T13811 arg2Of differences,to
R8926 T13812 T13813 arg1Of differences,in
R8927 T13814 T13813 arg2Of binding,in
R8930 T13816 T13815 arg2Of "41,42",[
R8932 T13817 T13815 arg3Of ],[
R9050 T13745 T13744 arg1Of contradictory,seemingly
R9055 T13746 T13743 arg1Of data,These
R9063 T13746 T13745 arg1Of data,contradictory
R9065 T13746 T13747 arg1Of data,could
R9066 T13746 T13748 arg1Of data,be
R9067 T13746 T13749 arg2Of data,explained
R9075 T13746 T13810 arg1Of data,leading
R9079 T13749 T13747 arg2Of explained,could
R9089 T13749 T13748 arg2Of explained,be
R9096 T13749 T13808 arg1Of explained,","
R9099 T13749 T13810 modOf explained,leading
R9101 T13751 T13752 arg1Of differences,in
R9106 T13751 T13756 arg1Of differences,or
R9108 T13755 T13752 arg2Of subunits,in
R9118 T13755 T13753 arg1Of subunits,either
R9119 T13755 T13754 arg1Of subunits,NFκB
R9120 T13756 T13749 arg1Of or,explained
R9127 T13756 T13750 arg2Of or,by
R9131 T13756 T13769 arg1Of or,within
R9132 T13756 T13775 arg1Of or,between
R9133 T13756 T13782 arg1Of or,(
R9134 T13758 T13756 arg2Of nucleotides,or
R9135 T13758 T13757 arg2Of nucleotides,conserved
R9136 T13758 T13759 arg1Of nucleotides,(
R9137 T13761 T13762 arg1Of 1,","
R9147 T13762 T13764 arg1Of ",",","
R9151 T13763 T13762 arg2Of 2,","
R9155 T13764 T13759 arg2Of ",",(
R9157 T13764 T13760 arg1Of ",",#
R9159 T13764 T13766 arg1Of ",",","
R9160 T13765 T13764 arg2Of 3,","
R9164 T13767 T13766 arg2Of 10,","
R9170 T13768 T13759 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12387 198-204 Protein denotes IL-1RA
T12386 185-189 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14295 304-308 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T14294 185-189 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T14270 229-235 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T14269 198-204 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA

GO-MF

Id Subject Object Predicate Lexical cue
T12545 365-372 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12544 159-166 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11877 0-381 Sentence denotes These seemingly contradictory data could be explained by differences in either NFκB subunits or conserved nucleotides (#1, 2, 3, 10) within the decameric NFκB binding motif between the TNFα and the IL-1RA promoter (for NFκB3 the IL-1RA motif contains a T on position 10 instead of the conserved C in the TNFα motif, see Table 1), probably leading to differences in binding [41,42].
T207 0-381 Sentence denotes These seemingly contradictory data could be explained by differences in either NFκB subunits or conserved nucleotides (#1, 2, 3, 10) within the decameric NFκB binding motif between the TNFα and the IL-1RA promoter (for NFκB3 the IL-1RA motif contains a T on position 10 instead of the conserved C in the TNFα motif, see Table 1), probably leading to differences in binding [41,42].

simple1

Id Subject Object Predicate Lexical cue
T12766 198-204 Protein denotes IL-1RA
T12765 185-189 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16604 198-204 Protein denotes IL-1RA
T16603 185-189 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14412 198-204 Protein denotes IL-1RA
T14411 185-189 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T14672 159-166 Binding denotes binding
T14587 198-204 Protein denotes IL-1RA
T14586 185-189 Protein denotes TNFα
R9640 T14586 T14672 themeOf TNFα,binding
R9642 T14587 T14672 themeOf IL-1RA,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16933 96-117 Binding denotes conserved nucleotides
T16904 96-117 Entity denotes conserved nucleotides
T16836 251-269 Entity denotes a T on position 10
T16819 304-308 Protein denotes TNFα
T16777 140-158 Protein denotes the decameric NFκB
T16762 194-213 Entity denotes the IL-1RA promoter
T16757 258-269 Entity denotes position 10
T16735 181-189 Protein denotes the TNFα
T16724 198-204 Protein denotes IL-1RA
T16709 79-83 Protein denotes NFκB
T16690 229-235 Protein denotes IL-1RA
R11449 T16762 T16724 partOf the IL-1RA promoter,IL-1RA
R11494 T16904 T16933 themeOf conserved nucleotides,conserved nucleotides

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15883 380-381 . denotes .
T15882 379-380 NNP denotes ]
T15881 374-379 CD denotes 41,42
T15880 373-374 NNP denotes [
T15879 365-372 JJ denotes binding
T15878 362-364 IN denotes in
T15877 350-361 NNS denotes differences
T15876 347-349 TO denotes to
T15875 339-346 VBG denotes leading
T15874 330-338 RB denotes probably
T15873 328-329 , denotes ,
T15872 327-328 -RRB- denotes )
T15871 326-327 CD denotes 1
T15870 320-325 NNP denotes Table
T15869 316-319 VBP denotes see
T15868 314-315 , denotes ,
T15867 309-314 NN denotes motif
T15866 304-308 NNP denotes TNFα
T15865 300-303 DT denotes the
T15864 297-299 IN denotes in
T15863 295-296 NNP denotes C
T15862 285-294 JJ denotes conserved
T15861 281-284 DT denotes the
T15860 278-280 IN denotes of
T15859 270-277 RB denotes instead
T15858 267-269 CD denotes 10
T15857 258-266 NN denotes position
T15856 255-257 IN denotes on
T15855 253-254 NN denotes T
T15854 251-252 DT denotes a
T15853 242-250 VBZ denotes contains
T15852 236-241 NN denotes motif
T15851 229-235 NNP denotes IL-1RA
T15850 225-228 DT denotes the
T15849 219-224 NNP denotes NFκB3
T15848 215-218 IN denotes for
T15847 214-215 -LRB- denotes (
T15846 205-213 NN denotes promoter
T15845 198-204 NN denotes IL-1RA
T15844 194-197 DT denotes the
T15843 190-193 CC denotes and
T15842 185-189 NNP denotes TNFα
T15841 181-184 DT denotes the
T15840 173-180 IN denotes between
T15839 167-172 NN denotes motif
T15838 159-166 JJ denotes binding
T15837 154-158 NNP denotes NFκB
T15836 144-153 JJ denotes decameric
T15835 140-143 DT denotes the
T15834 133-139 IN denotes within
T15833 131-132 -RRB- denotes )
T15832 129-131 CD denotes 10
T15831 127-128 , denotes ,
T15830 126-127 CD denotes 3
T15829 124-125 , denotes ,
T15828 123-124 CD denotes 2
T15827 121-122 , denotes ,
T15826 120-121 CD denotes 1
T15825 119-120 # denotes #
T15824 118-119 -LRB- denotes (
T15823 106-117 NNS denotes nucleotides
T15822 96-105 VBN denotes conserved
T15821 93-95 CC denotes or
T15820 84-92 NNS denotes subunits
T15819 79-83 NNP denotes NFκB
T15818 72-78 DT denotes either
T15817 69-71 IN denotes in
T15816 57-68 NNS denotes differences
T15815 54-56 IN denotes by
T15814 44-53 VBN denotes explained
T15813 41-43 VB denotes be
T15812 35-40 MD denotes could
T15811 30-34 NNS denotes data
T15810 16-29 JJ denotes contradictory
T15809 6-15 RB denotes seemingly
T15808 0-5 DT denotes These
R10668 T15808 T15811 det These,data
R10669 T15809 T15810 advmod seemingly,contradictory
R10671 T15810 T15811 amod contradictory,data
R10672 T15811 T15814 nsubjpass data,explained
R10674 T15812 T15814 aux could,explained
R10675 T15813 T15814 auxpass be,explained
R10676 T15814 T15814 ROOT explained,explained
R10679 T15815 T15814 agent by,explained
R10680 T15816 T15815 pobj differences,by
R10682 T15817 T15816 prep in,differences
R10683 T15818 T15820 preconj either,subunits
R10685 T15819 T15820 compound NFκB,subunits
R10686 T15820 T15817 pobj subunits,in
R10687 T15821 T15816 cc or,differences
R10689 T15822 T15823 amod conserved,nucleotides
R10690 T15823 T15816 conj nucleotides,differences
R10691 T15824 T15853 punct (,contains
R10693 T15825 T15853 nsubj #,contains
R10694 T15826 T15825 nummod 1,#
R10695 T15827 T15832 punct ",",10
R10697 T15828 T15832 dep 2,10
R10698 T15829 T15830 punct ",",3
R10699 T15830 T15828 prep 3,2
R10701 T15831 T15832 punct ",",10
R10702 T15832 T15825 appos 10,#
R10703 T15833 T15825 punct ),#
R10705 T15834 T15825 prep within,#
R10706 T15835 T15839 det the,motif
R10707 T15836 T15839 amod decameric,motif
R10709 T15837 T15839 amod NFκB,motif
R10710 T15838 T15839 amod binding,motif
R10712 T15839 T15834 pobj motif,within
R10713 T15840 T15839 prep between,motif
R10714 T15841 T15842 det the,TNFα
R10717 T15842 T15840 pobj TNFα,between
R10718 T15843 T15842 cc and,TNFα
R10719 T15844 T15846 det the,promoter
R10721 T15845 T15846 compound IL-1RA,promoter
R10722 T15846 T15842 conj promoter,TNFα
R10723 T15847 T15846 punct (,promoter
R10725 T15848 T15846 prep for,promoter
R10726 T15849 T15848 pobj NFκB3,for
R10728 T15850 T15852 det the,motif
R10729 T15851 T15852 compound IL-1RA,motif
R10731 T15852 T15846 conj motif,promoter
R10732 T15853 T15814 parataxis contains,explained
R10733 T15854 T15855 det a,T
R10735 T15855 T15853 dobj T,contains
R10736 T15856 T15855 prep on,T
R10737 T15857 T15856 pobj position,on
R10739 T15858 T15857 nummod 10,position
R10740 T15859 T15860 advmod instead,of
R10741 T15860 T15857 cc of,position
R10743 T15861 T15863 det the,C
R10744 T15862 T15863 amod conserved,C
R10746 T15863 T15855 conj C,T
R10747 T15864 T15863 prep in,C
R10749 T15865 T15867 det the,motif
R10750 T15866 T15867 compound TNFα,motif
R10752 T15867 T15864 pobj motif,in
R10753 T15868 T15853 punct ",",contains
R10754 T15869 T15814 conj see,explained
R10756 T15870 T15869 dobj Table,see
R10757 T15871 T15870 nummod 1,Table
R10758 T15872 T15869 punct ),see
R10760 T15873 T15814 punct ",",explained
R10761 T15874 T15875 advmod probably,leading
R10762 T15875 T15814 advcl leading,explained
R10763 T15876 T15875 prep to,leading
R10764 T15877 T15876 pobj differences,to
R10765 T15878 T15877 prep in,differences
R10767 T15879 T15882 amod binding,]
R10768 T15880 T15882 compound [,]
R10770 T15881 T15882 compound "41,42",]
R10771 T15882 T15878 pobj ],in
R10772 T15883 T15814 punct .,explained

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12478 304-314 Protein denotes TNFα motif
T12477 229-241 Protein denotes IL-1RA motif
T12476 219-224 Protein denotes NFκB3
T12475 198-213 Protein denotes IL-1RA promoter
T12474 185-189 Protein denotes TNFα
T12473 154-158 Protein denotes NFκB
T12472 79-92 Protein denotes NFκB subunits

testone

Id Subject Object Predicate Lexical cue
T11436 198-204 Protein denotes IL-1RA
T11435 185-189 Protein denotes TNFα
T11531 365-372 Binding denotes binding
T11530 205-213 Entity denotes promoter
T11529 154-172 Entity denotes NFκB binding motif
T11528 144-153 Entity denotes decameric
R7470 T11436 T11531 themeOf IL-1RA,binding
R7520 T11529 T11435 partOf NFκB binding motif,TNFα
R7521 T11529 T11436 partOf NFκB binding motif,IL-1RA
R7522 T11530 T11436 partOf promoter,IL-1RA

test3

Id Subject Object Predicate Lexical cue
T11805 198-204 Protein denotes IL-1RA
T11804 185-189 Protein denotes TNFα
T11639 198-204 Protein denotes IL-1RA
T11638 185-189 Protein denotes TNFα