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PMC:1472690 / 26438-26724 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13314 284-285 -RRB- denotes )
T13313 283-284 CD denotes 7
T13312 278-282 NN denotes Fig.
T13311 277-278 -LRB- denotes (
T13310 270-276 NN denotes IL-1RA
T13309 267-269 IN denotes of
T13308 257-266 NN denotes induction
T13307 253-256 IN denotes for
T13306 243-252 JJ denotes necessary
T13305 239-242 CC denotes and
T13304 233-238 JJ denotes other
T13303 228-232 DT denotes each
T13302 225-227 TO denotes to
T13301 218-224 VB denotes linked
T13300 214-217 VB denotes are
T13299 208-213 NN denotes steps
T13298 202-207 DT denotes these
T13297 197-201 IN denotes that
T13296 189-196 VB denotes suggest
T13295 183-188 MD denotes might
T13294 173-182 NN denotes treatment
T13293 170-172 NN denotes GP
T13292 167-169 TO denotes to
T13291 161-166 RB denotes prior
T13290 150-160 NN denotes inhibitors
T13289 140-149 JJ denotes selective
T13288 137-139 IN denotes by
T13287 129-136 VB denotes induced
T13286 121-128 NN denotes protein
T13285 117-120 CC denotes and
T13284 112-116 NN denotes mRNA
T13283 105-111 NN denotes IL-1RA
T13282 102-104 IN denotes of
T13274 62-67 NN denotes sites
T13273 59-61 TO denotes to
T13272 51-58 NN denotes binding
T13271 44-50 NN denotes NFIL-6
T13281 99-101 IN denotes as
T13280 94-98 RB denotes well
T13279 91-93 RB denotes as
T13278 82-90 NN denotes promoter
T13277 75-81 NN denotes IL-1RA
T13276 71-74 DT denotes the
T13275 68-70 IN denotes in
T13270 40-43 CC denotes and
T13269 35-39 NN denotes NFAT
T13268 33-34 -COMMA- denotes ,
T13267 29-33 NN denotes NFκB
T13266 26-28 IN denotes of
T13265 17-25 NN denotes decrease
T13264 4-16 JJ denotes differential
T13263 0-3 DT denotes The
R8423 T13265 T13263 arg1Of decrease,The
R8424 T13265 T13264 arg1Of decrease,differential
R8425 T13265 T13266 arg1Of decrease,of
R8426 T13265 T13275 arg1Of decrease,in
R8427 T13265 T13282 arg1Of decrease,of
R8428 T13265 T13287 arg2Of decrease,induced
R8429 T13265 T13295 arg1Of decrease,might
R8430 T13265 T13296 arg1Of decrease,suggest
R8431 T13267 T13268 arg1Of NFκB,","
R8432 T13268 T13270 arg1Of ",",and
R8433 T13269 T13268 arg2Of NFAT,","
R8434 T13270 T13266 arg2Of and,of
R8435 T13272 T13270 arg2Of binding,and
R8436 T13272 T13271 arg1Of binding,NFIL-6
R8437 T13272 T13273 arg1Of binding,to
R8438 T13274 T13273 arg2Of sites,to
R8439 T13275 T13281 arg1Of in,as
R8440 T13278 T13275 arg2Of promoter,in
R8441 T13278 T13276 arg1Of promoter,the
R8442 T13278 T13277 arg1Of promoter,IL-1RA
R8443 T13281 T13279 arg1Of as,as
R8444 T13281 T13280 arg1Of as,well
R8445 T13282 T13281 arg2Of of,as
R8446 T13284 T13283 arg1Of mRNA,IL-1RA
R8447 T13284 T13285 arg1Of mRNA,and
R8448 T13285 T13282 arg2Of and,of
R8449 T13286 T13285 arg2Of protein,and
R8450 T13290 T13287 arg1Of inhibitors,induced
R8451 T13290 T13288 arg2Of inhibitors,by
R8452 T13290 T13289 arg1Of inhibitors,selective
R8453 T13290 T13292 arg1Of inhibitors,to
R8454 T13292 T13291 arg1Of to,prior
R8455 T13294 T13292 arg2Of treatment,to
R8456 T13294 T13293 arg1Of treatment,GP
R8457 T13296 T13295 arg2Of suggest,might
R8458 T13299 T13298 arg1Of steps,these
R8459 T13299 T13300 arg1Of steps,are
R8460 T13299 T13301 arg2Of steps,linked
R8461 T13301 T13296 arg2Of linked,suggest
R8462 T13301 T13297 arg1Of linked,that
R8463 T13301 T13300 arg2Of linked,are
R8464 T13301 T13302 arg1Of linked,to
R8465 T13304 T13305 arg1Of other,and
R8466 T13305 T13307 arg1Of and,for
R8467 T13306 T13305 arg2Of necessary,and
R8468 T13308 T13302 arg2Of induction,to
R8469 T13308 T13303 arg1Of induction,each
R8470 T13308 T13304 arg1Of induction,other
R8471 T13308 T13306 arg1Of induction,necessary
R8472 T13308 T13309 arg1Of induction,of
R8473 T13310 T13309 arg2Of IL-1RA,of
R8474 T13310 T13311 arg1Of IL-1RA,(
R8475 T13312 T13311 arg2Of Fig.,(
R8476 T13312 T13313 arg1Of Fig.,7
R8477 T13314 T13311 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12346 270-276 Protein denotes IL-1RA
T12345 105-111 Protein denotes IL-1RA
T12344 75-81 Protein denotes IL-1RA
T12343 44-50 Protein denotes NFIL-6
T12342 35-39 Protein denotes NFAT

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14259 270-276 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T14258 105-111 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T14257 75-81 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA

GO-MF

Id Subject Object Predicate Lexical cue
T12537 51-58 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11864 0-286 Sentence denotes The differential decrease of NFκB, NFAT and NFIL-6 binding to sites in the IL-1RA promoter as well as of IL-1RA mRNA and protein induced by selective inhibitors prior to GP treatment might suggest that these steps are linked to each other and necessary for induction of IL-1RA (Fig. 7).
T192 0-286 Sentence denotes The differential decrease of NFκB, NFAT and NFIL-6 binding to sites in the IL-1RA promoter as well as of IL-1RA mRNA and protein induced by selective inhibitors prior to GP treatment might suggest that these steps are linked to each other and necessary for induction of IL-1RA (Fig. 7).

simple1

Id Subject Object Predicate Lexical cue
T12721 35-39 Protein denotes NFAT
T12725 270-276 Protein denotes IL-1RA
T12724 105-111 Protein denotes IL-1RA
T12723 75-81 Protein denotes IL-1RA
T12722 44-50 Protein denotes NFIL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16563 270-276 Protein denotes IL-1RA
T16562 105-111 Protein denotes IL-1RA
T16561 75-81 Protein denotes IL-1RA
T16560 44-50 Protein denotes NFIL-6
T16559 35-39 Protein denotes NFAT
T16655 257-266 Positive_regulation denotes induction
T16654 17-25 Negative_regulation denotes decrease
T16653 243-252 Positive_regulation denotes necessary
T16652 51-58 Binding denotes binding
T16651 129-136 Positive_regulation denotes induced
R11370 T16559 T16652 themeOf NFAT,binding
R11371 T16559 T16652 themeOf NFAT,binding
R11372 T16559 T16651 themeOf NFAT,induced
R11373 T16559 T16654 themeOf NFAT,decrease
R11374 T16560 T16652 themeOf NFIL-6,binding
R11375 T16560 T16652 themeOf NFIL-6,binding
R11376 T16560 T16654 themeOf NFIL-6,decrease
R11377 T16561 T16652 themeOf IL-1RA,binding
R11378 T16561 T16652 themeOf IL-1RA,binding
R11379 T16562 T16652 themeOf IL-1RA,binding
R11380 T16562 T16652 themeOf IL-1RA,binding
R11381 T16563 T16655 themeOf IL-1RA,induction
R11457 T16655 T16653 themeOf induction,necessary

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14371 270-276 Protein denotes IL-1RA
T14370 105-111 Protein denotes IL-1RA
T14369 75-81 Protein denotes IL-1RA
T14368 44-50 Protein denotes NFIL-6
T14367 35-39 Protein denotes NFAT
T14466 51-58 Binding denotes binding
T14465 129-136 Positive_regulation denotes induced
T14464 17-25 Negative_regulation denotes decrease
T14463 257-266 Positive_regulation denotes induction
T14462 243-252 Positive_regulation denotes necessary
R9470 T14367 T14466 themeOf NFAT,binding
R9474 T14367 T14466 themeOf NFAT,binding
R9485 T14367 T14465 themeOf NFAT,induced
R9486 T14463 T14462 themeOf induction,necessary
R9487 T14367 T14464 themeOf NFAT,decrease
R9488 T14368 T14466 themeOf NFIL-6,binding
R9489 T14368 T14466 themeOf NFIL-6,binding
R9490 T14368 T14465 themeOf NFIL-6,induced
R9491 T14368 T14464 themeOf NFIL-6,decrease
R9492 T14369 T14466 themeOf IL-1RA,binding
R9493 T14369 T14466 themeOf IL-1RA,binding
R9494 T14370 T14466 themeOf IL-1RA,binding
R9496 T14370 T14466 themeOf IL-1RA,binding
R9497 T14370 T14464 themeOf IL-1RA,decrease
R9498 T14371 T14463 themeOf IL-1RA,induction

DLUT931

Id Subject Object Predicate Lexical cue
T14546 270-276 Protein denotes IL-1RA
T14545 105-111 Protein denotes IL-1RA
T14544 75-81 Protein denotes IL-1RA
T14543 44-50 Protein denotes NFIL-6
T14642 257-266 Positive_regulation denotes induction
T14641 129-136 Positive_regulation denotes induced
T14640 17-25 Negative_regulation denotes decrease
T14542 35-39 Protein denotes NFAT
T14643 243-252 Positive_regulation denotes necessary
R9597 T14542 T14640 themeOf NFAT,decrease
R9600 T14546 T14642 themeOf IL-1RA,induction
R9683 T14640 T14641 themeOf decrease,induced
R9687 T14641 T14640 themeOf induced,decrease
R9688 T14642 T14643 themeOf induction,necessary
R9598 T14543 T14640 themeOf NFIL-6,decrease
R9684 T14640 T14641 themeOf decrease,induced
R9686 T14641 T14640 themeOf induced,decrease

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16925 59-67 Entity denotes to sites
T16912 105-116 Protein denotes IL-1RA mRNA
T16825 75-81 Protein denotes IL-1RA
T16824 278-281 Protein denotes Fig
T16820 71-90 Entity denotes the IL-1RA promoter
T16798 150-160 Entity denotes inhibitors
T16749 105-111 Protein denotes IL-1RA
T16748 121-128 Protein denotes protein
T16745 267-276 Protein denotes of IL-1RA
T16719 35-39 Protein denotes NFAT
T16717 26-33 Protein denotes of NFκB
T16688 44-90 Protein denotes NFIL-6 binding to sites in the IL-1RA promoter
T16967 44-90 Binding denotes NFIL-6 binding to sites in the IL-1RA promoter
T16952 253-276 Positive_regulation denotes for induction of IL-1RA
T16951 253-276 Gene_expression denotes for induction of IL-1RA
R11481 T16820 T16825 partOf the IL-1RA promoter,IL-1RA
R11408 T16688 T16967 themeOf NFIL-6 binding to sites in the IL-1RA promoter,NFIL-6 binding to sites in the IL-1RA promoter
R11437 T16745 T16951 themeOf of IL-1RA,for induction of IL-1RA
R11438 T16745 T16952 themeOf of IL-1RA,for induction of IL-1RA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15363 285-286 . denotes .
T15362 284-285 -RRB- denotes )
T15361 283-284 CD denotes 7
T15360 278-282 NNP denotes Fig.
T15359 277-278 -LRB- denotes (
T15358 270-276 NNP denotes IL-1RA
T15357 267-269 IN denotes of
T15356 257-266 NN denotes induction
T15355 253-256 IN denotes for
T15354 243-252 JJ denotes necessary
T15353 239-242 CC denotes and
T15352 233-238 JJ denotes other
T15351 228-232 DT denotes each
T15350 225-227 TO denotes to
T15349 218-224 VBN denotes linked
T15348 214-217 VBP denotes are
T15347 208-213 NNS denotes steps
T15346 202-207 DT denotes these
T15345 197-201 IN denotes that
T15344 189-196 VB denotes suggest
T15343 183-188 MD denotes might
T15342 173-182 NN denotes treatment
T15341 170-172 NNP denotes GP
T15340 167-169 TO denotes to
T15339 161-166 RB denotes prior
T15338 150-160 NNS denotes inhibitors
T15337 140-149 JJ denotes selective
T15336 137-139 IN denotes by
T15335 129-136 VBN denotes induced
T15334 121-128 NN denotes protein
T15333 117-120 CC denotes and
T15332 112-116 NNP denotes mRNA
T15331 105-111 NNP denotes IL-1RA
T15330 102-104 IN denotes of
T15329 99-101 IN denotes as
T15328 94-98 RB denotes well
T15327 91-93 RB denotes as
T15326 82-90 NN denotes promoter
T15325 75-81 NN denotes IL-1RA
T15324 71-74 DT denotes the
T15323 68-70 IN denotes in
T15322 62-67 NNS denotes sites
T15321 59-61 TO denotes to
T15320 51-58 JJ denotes binding
T15319 44-50 NNP denotes NFIL-6
T15318 40-43 CC denotes and
T15317 35-39 NNP denotes NFAT
T15316 33-34 , denotes ,
T15315 29-33 NNP denotes NFκB
T15314 26-28 IN denotes of
T15313 17-25 NN denotes decrease
T15312 4-16 JJ denotes differential
T15311 0-3 DT denotes The
R10189 T15357 T15356 prep of,induction
R10192 T15358 T15357 pobj IL-1RA,of
R10196 T15359 T15358 punct (,IL-1RA
R10200 T15360 T15358 appos Fig.,IL-1RA
R10204 T15361 T15360 nummod 7,Fig.
R10210 T15362 T15358 punct ),IL-1RA
R10214 T15363 T15344 punct .,suggest
R10256 T15311 T15313 det The,decrease
R10257 T15312 T15313 compound differential,decrease
R10258 T15313 T15320 nsubj decrease,binding
R10259 T15314 T15313 prep of,decrease
R10260 T15315 T15314 pobj NFκB,of
R10262 T15316 T15315 punct ",",NFκB
R10263 T15317 T15315 conj NFAT,NFκB
R10264 T15318 T15317 cc and,NFAT
R10266 T15319 T15317 conj NFIL-6,NFAT
R10267 T15320 T15320 ROOT binding,binding
R10268 T15321 T15320 prep to,binding
R10270 T15322 T15321 pobj sites,to
R10271 T15323 T15322 prep in,sites
R10273 T15324 T15326 det the,promoter
R10274 T15325 T15326 compound IL-1RA,promoter
R10275 T15326 T15323 pobj promoter,in
R10277 T15327 T15329 advmod as,as
R10278 T15328 T15329 advmod well,as
R10279 T15329 T15320 prep as,binding
R10281 T15330 T15320 prep of,binding
R10282 T15331 T15332 compound IL-1RA,mRNA
R10283 T15332 T15330 pobj mRNA,of
R10285 T15333 T15332 cc and,mRNA
R10286 T15334 T15344 nsubj protein,suggest
R10287 T15335 T15334 acl induced,protein
R10288 T15336 T15335 agent by,induced
R10290 T15337 T15338 amod selective,inhibitors
R10291 T15338 T15336 pobj inhibitors,by
R10292 T15339 T15335 advmod prior,induced
R10294 T15340 T15335 prep to,induced
R10295 T15341 T15342 compound GP,treatment
R10298 T15342 T15340 pobj treatment,to
R10299 T15343 T15344 aux might,suggest
R10300 T15344 T15320 conj suggest,binding
R10302 T15345 T15349 mark that,linked
R10303 T15346 T15347 det these,steps
R10304 T15347 T15349 nsubjpass steps,linked
R10306 T15348 T15349 auxpass are,linked
R10307 T15349 T15344 ccomp linked,suggest
R10308 T15350 T15349 prep to,linked
R10309 T15351 T15352 det each,other
R10310 T15352 T15350 pobj other,to
R10312 T15353 T15349 cc and,linked
R10313 T15354 T15349 conj necessary,linked
R10314 T15355 T15354 prep for,necessary
R10315 T15356 T15355 pobj induction,for

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12297 257-266 Positive_regulation denotes induction
T12296 257-266 Positive_regulation denotes induction
T12295 17-25 Negative_regulation denotes decrease
T12294 17-25 Negative_regulation denotes decrease
T12293 17-25 Negative_regulation denotes decrease
T12292 278-281 Protein denotes Fig
T12291 270-276 Protein denotes IL-1RA
T12290 105-116 Protein denotes IL-1RA mRNA
T12289 75-90 Protein denotes IL-1RA promoter
T12288 44-50 Protein denotes NFIL-6
T12287 35-39 Protein denotes NFAT
T12286 29-33 Protein denotes NFκB
R7896 T12286 T12293 themeOf NFκB,decrease
R7897 T12287 T12294 themeOf NFAT,decrease
R7898 T12288 T12295 themeOf NFIL-6,decrease
R7899 T12291 T12296 themeOf IL-1RA,induction
R7900 T12292 T12297 themeOf Fig,induction

testone

Id Subject Object Predicate Lexical cue
T11395 270-276 Protein denotes IL-1RA
T11394 105-111 Protein denotes IL-1RA
T11393 75-81 Protein denotes IL-1RA
T11392 44-50 Protein denotes NFIL-6
T11391 35-39 Protein denotes NFAT
T11501 257-266 Positive_regulation denotes induction
T11500 243-252 Positive_regulation denotes necessary
T11499 129-136 Positive_regulation denotes induced
T11498 82-90 Entity denotes promoter
T11497 62-67 Entity denotes sites
T11496 51-58 Binding denotes binding
T11495 17-25 Negative_regulation denotes decrease
R7443 T11391 T11496 themeOf NFAT,binding
R7444 T11392 T11496 themeOf NFIL-6,binding
R7445 T11395 T11501 themeOf IL-1RA,induction
R7501 T11496 T11495 themeOf binding,decrease
R7502 T11496 T11499 themeOf binding,induced
R7503 T11498 T11496 themeOf promoter,binding
R7504 T11498 T11393 partOf promoter,IL-1RA
R7505 T11501 T11500 themeOf induction,necessary

test3

Id Subject Object Predicate Lexical cue
T11735 270-276 Protein denotes IL-1RA
T11734 257-266 Positive_regulation denotes induction
T11733 243-252 Positive_regulation denotes necessary
T11732 129-136 Positive_regulation denotes induced
T11731 105-111 Protein denotes IL-1RA
T11730 75-81 Protein denotes IL-1RA
T11729 51-58 Binding denotes binding
T11728 44-50 Protein denotes NFIL-6
T11727 35-39 Protein denotes NFAT
T11726 17-25 Negative_regulation denotes decrease
T11598 270-276 Protein denotes IL-1RA
T11597 105-111 Protein denotes IL-1RA
T11596 75-81 Protein denotes IL-1RA
T11595 44-50 Protein denotes NFIL-6
T11594 35-39 Protein denotes NFAT
R7565 T11726 T11732 themeOf decrease,induced
R7566 T11727 T11729 themeOf NFAT,binding
R7567 T11727 T11726 themeOf NFAT,decrease
R7568 T11728 T11729 themeOf NFIL-6,binding
R7569 T11729 T11726 themeOf binding,decrease
R7570 T11734 T11733 themeOf induction,necessary
R7571 T11735 T11734 themeOf IL-1RA,induction