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PMC:1472690 / 26157-26437 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13262 271-279 NN denotes promoter
T13261 264-270 NN denotes IL-1RA
T13260 260-263 CC denotes and
T13259 255-259 NN denotes IL-6
T13258 253-254 -COMMA- denotes ,
T13257 249-253 NN denotes IFNγ
T13256 245-248 DT denotes the
T13255 237-244 IN denotes between
T13254 235-236 -RRB- denotes )
T13253 231-235 NN denotes NFAT
T13252 230-231 -LRB- denotes (
T13251 222-229 NN denotes factors
T13250 208-221 NN denotes transcription
T13249 198-207 VB denotes activated
T13248 194-197 DT denotes the
T13247 191-193 IN denotes of
T13246 179-190 NN denotes composition
T13245 175-178 DT denotes the
T13244 172-174 CC denotes or
T13243 166-171 NN denotes motif
T13242 158-165 VB denotes binding
T13241 154-157 DT denotes the
T13240 151-153 IN denotes in
T13239 139-150 NN denotes differences
T13238 136-138 TO denotes to
T13237 132-135 JJ denotes due
T13236 129-131 VB denotes be
T13235 123-128 MD denotes might
T13234 117-122 WDT denotes which
T13233 115-116 -COMMA- denotes ,
T13232 108-115 NN denotes binding
T13231 104-107 NN denotes DNA
T13230 97-103 NN denotes NFIL-6
T13229 93-96 CC denotes and
T13228 84-92 NN denotes NFATP2/3
T13227 81-83 IN denotes of
T13226 71-80 NN denotes induction
T13225 67-70 IN denotes via
T13224 57-66 RB denotes primarily
T13223 50-56 NN denotes IL-1RA
T13222 47-49 IN denotes of
T13221 36-46 NN denotes production
T13220 33-35 TO denotes to
T13219 27-32 VB denotes leads
T13218 24-26 NN denotes GP
T13217 19-23 IN denotes that
T13216 9-18 VB denotes indicated
T13215 4-8 NN denotes data
T13214 0-3 PRP-DOLLAR- denotes Our
R8372 T13215 T13214 arg1Of data,Our
R8373 T13215 T13216 arg1Of data,indicated
R8374 T13218 T13219 arg1Of GP,leads
R8375 T13219 T13216 arg2Of leads,indicated
R8376 T13219 T13217 arg1Of leads,that
R8377 T13219 T13220 arg1Of leads,to
R8378 T13219 T13225 arg1Of leads,via
R8379 T13221 T13220 arg2Of production,to
R8380 T13221 T13222 arg1Of production,of
R8381 T13223 T13222 arg2Of IL-1RA,of
R8382 T13225 T13224 arg1Of via,primarily
R8383 T13226 T13225 arg2Of induction,via
R8384 T13226 T13227 arg1Of induction,of
R8385 T13228 T13229 arg1Of NFATP2/3,and
R8386 T13230 T13229 arg2Of NFIL-6,and
R8387 T13232 T13227 arg2Of binding,of
R8388 T13232 T13228 arg1Of binding,NFATP2/3
R8389 T13232 T13230 arg1Of binding,NFIL-6
R8390 T13232 T13231 arg1Of binding,DNA
R8391 T13232 T13233 arg1Of binding,","
R8392 T13232 T13234 arg1Of binding,which
R8393 T13232 T13235 arg1Of binding,might
R8394 T13232 T13236 arg1Of binding,be
R8395 T13232 T13238 arg1Of binding,to
R8396 T13236 T13235 arg2Of be,might
R8397 T13238 T13236 arg2Of to,be
R8398 T13238 T13237 arg1Of to,due
R8399 T13239 T13238 arg2Of differences,to
R8400 T13239 T13240 arg1Of differences,in
R8401 T13239 T13255 arg1Of differences,between
R8402 T13243 T13241 arg1Of motif,the
R8403 T13243 T13242 arg1Of motif,binding
R8404 T13243 T13244 arg1Of motif,or
R8405 T13244 T13240 arg2Of or,in
R8406 T13246 T13244 arg2Of composition,or
R8407 T13246 T13245 arg1Of composition,the
R8408 T13246 T13247 arg1Of composition,of
R8409 T13251 T13247 arg2Of factors,of
R8410 T13251 T13248 arg1Of factors,the
R8411 T13251 T13249 arg2Of factors,activated
R8412 T13251 T13250 arg1Of factors,transcription
R8413 T13251 T13252 arg1Of factors,(
R8414 T13253 T13252 arg2Of NFAT,(
R8415 T13254 T13252 arg3Of ),(
R8416 T13257 T13258 arg1Of IFNγ,","
R8417 T13258 T13260 arg1Of ",",and
R8418 T13259 T13258 arg2Of IL-6,","
R8419 T13260 T13255 arg2Of and,between
R8420 T13260 T13256 arg1Of and,the
R8421 T13262 T13260 arg2Of promoter,and
R8422 T13262 T13261 arg1Of promoter,IL-1RA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12341 264-270 Protein denotes IL-1RA
T12340 255-259 Protein denotes IL-6
T12339 249-253 Protein denotes IFNγ
T12338 231-235 Protein denotes NFAT
T12337 97-103 Protein denotes NFIL-6
T12336 91-92 Protein denotes 3
T12335 84-90 Protein denotes NFATP2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14256 264-270 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T14255 50-56 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T14326 255-259 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-BP

Id Subject Object Predicate Lexical cue
T11921 198-229 http://purl.obolibrary.org/obo/GO_1901485 denotes activated transcription factors
T11920 198-229 http://purl.obolibrary.org/obo/GO_0032793 denotes activated transcription factors
T11919 198-229 http://purl.obolibrary.org/obo/GO_0051091 denotes activated transcription factors
T11915 208-221 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T12565 255-259 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T12564 198-229 http://purl.obolibrary.org/obo/GO_0033613 denotes activated transcription factors
T12562 104-115 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T12536 158-165 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12535 108-115 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11863 0-280 Sentence denotes Our data indicated that GP leads to production of IL-1RA primarily via induction of NFATP2/3 and NFIL-6 DNA binding, which might be due to differences in the binding motif or the composition of the activated transcription factors (NFAT) between the IFNγ, IL-6 and IL-1RA promoter.
T191 0-280 Sentence denotes Our data indicated that GP leads to production of IL-1RA primarily via induction of NFATP2/3 and NFIL-6 DNA binding, which might be due to differences in the binding motif or the composition of the activated transcription factors (NFAT) between the IFNγ, IL-6 and IL-1RA promoter.

simple1

Id Subject Object Predicate Lexical cue
T12720 264-270 Protein denotes IL-1RA
T12719 255-259 Protein denotes IL-6
T12718 249-253 Protein denotes IFNγ
T12717 231-235 Protein denotes NFAT
T12716 97-103 Protein denotes NFIL-6
T12715 91-92 Protein denotes 3
T12714 84-90 Protein denotes NFATP2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16558 264-270 Protein denotes IL-1RA
T16557 255-259 Protein denotes IL-6
T16556 249-253 Protein denotes IFNγ
T16555 231-235 Protein denotes NFAT
T16554 97-103 Protein denotes NFIL-6
T16553 91-92 Protein denotes 3
T16552 84-90 Protein denotes NFATP2
T16650 198-207 Positive_regulation denotes activated
T16649 132-135 Positive_regulation denotes due
T16648 108-115 Binding denotes binding
T16647 27-32 Positive_regulation denotes leads
T16646 71-80 Positive_regulation denotes induction
R11362 T16552 T16646 themeOf NFATP2,induction
R11363 T16552 T16648 themeOf NFATP2,binding
R11364 T16553 T16646 themeOf 3,induction
R11365 T16553 T16648 themeOf 3,binding
R11366 T16554 T16646 themeOf NFIL-6,induction
R11367 T16554 T16648 themeOf NFIL-6,binding
R11368 T16554 T16648 themeOf NFIL-6,binding
R11369 T16555 T16650 themeOf NFAT,activated
R11440 T16646 T16647 themeOf induction,leads
R11441 T16646 T16647 themeOf induction,leads
R11442 T16646 T16647 themeOf induction,leads
R11444 T16646 T16647 themeOf induction,leads
R11445 T16646 T16647 themeOf induction,leads
R11446 T16646 T16649 themeOf induction,due
R11447 T16646 T16649 themeOf induction,due
R11448 T16646 T16649 themeOf induction,due
R11450 T16646 T16649 themeOf induction,due
R11451 T16646 T16649 themeOf induction,due
R11453 T16648 T16646 themeOf binding,induction
R11456 T16648 T16646 themeOf binding,induction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14366 264-270 Protein denotes IL-1RA
T14365 255-259 Protein denotes IL-6
T14364 249-253 Protein denotes IFNγ
T14363 231-235 Protein denotes NFAT
T14362 97-103 Protein denotes NFIL-6
T14361 91-92 Protein denotes 3
T14360 84-90 Protein denotes NFATP2
T14461 132-135 Positive_regulation denotes due
T14460 71-80 Positive_regulation denotes induction
T14459 108-115 Binding denotes binding
T14458 27-32 Positive_regulation denotes leads
R9462 T14360 T14460 themeOf NFATP2,induction
R9464 T14360 T14459 themeOf NFATP2,binding
R9466 T14361 T14460 themeOf 3,induction
R9467 T14361 T14459 themeOf 3,binding
R9468 T14362 T14459 themeOf NFIL-6,binding
R9469 T14362 T14459 themeOf NFIL-6,binding
R9475 T14459 T14460 themeOf binding,induction
R9476 T14459 T14460 themeOf binding,induction
R9477 T14460 T14458 themeOf induction,leads
R9478 T14460 T14458 themeOf induction,leads
R9479 T14460 T14458 themeOf induction,leads
R9480 T14460 T14458 themeOf induction,leads
R9481 T14460 T14461 themeOf induction,due
R9482 T14460 T14461 themeOf induction,due
R9483 T14460 T14461 themeOf induction,due
R9484 T14460 T14461 themeOf induction,due

DLUT931

Id Subject Object Predicate Lexical cue
T14540 255-259 Protein denotes IL-6
T14539 249-253 Protein denotes IFNγ
T14538 231-235 Protein denotes NFAT
T14537 97-103 Protein denotes NFIL-6
T14536 91-92 Protein denotes 3
T14535 84-90 Protein denotes NFATP2
T14639 198-207 Positive_regulation denotes activated
T14638 132-135 Positive_regulation denotes due
T14637 108-115 Binding denotes binding
T14636 71-80 Positive_regulation denotes induction
T14541 264-270 Protein denotes IL-1RA
R9585 T14535 T14636 themeOf NFATP2,induction
R9586 T14535 T14637 themeOf NFATP2,binding
R9588 T14537 T14637 themeOf NFIL-6,binding
R9589 T14538 T14639 themeOf NFAT,activated
R9680 T14636 T14638 themeOf induction,due
R9681 T14637 T14636 themeOf binding,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16874 264-270 Protein denotes IL-1RA
T16867 91-92 Protein denotes 3
T16852 264-279 Entity denotes IL-1RA promoter
T16800 84-92 Protein denotes NFATP2/3
T16794 245-253 Protein denotes the IFNγ
T16784 255-259 Protein denotes IL-6
T16750 97-116 Protein denotes NFIL-6 DNA binding,
T16747 84-92 Protein denotes NFATP2/3
T16730 47-56 Protein denotes of IL-1RA
T16722 231-235 Protein denotes NFAT
T16712 24-26 Protein denotes GP
T16969 33-56 Gene_expression denotes to production of IL-1RA
R11482 T16852 T16874 partOf IL-1RA promoter,IL-1RA
R11427 T16730 T16969 themeOf of IL-1RA,to production of IL-1RA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15310 279-280 . denotes .
T15309 271-279 NN denotes promoter
T15308 264-270 NNP denotes IL-1RA
T15307 260-263 CC denotes and
T15306 255-259 NNP denotes IL-6
T15305 253-254 , denotes ,
T15304 249-253 NNP denotes IFNγ
T15303 245-248 DT denotes the
T15302 237-244 IN denotes between
T15301 235-236 -RRB- denotes )
T15300 231-235 NNP denotes NFAT
T15299 230-231 -LRB- denotes (
T15298 222-229 NNS denotes factors
T15297 208-221 NN denotes transcription
T15296 198-207 VBN denotes activated
T15295 194-197 DT denotes the
T15294 191-193 IN denotes of
T15293 179-190 NN denotes composition
T15292 175-178 DT denotes the
T15291 172-174 CC denotes or
T15290 166-171 NN denotes motif
T15289 158-165 JJ denotes binding
T15288 154-157 DT denotes the
T15287 151-153 IN denotes in
T15286 139-150 NNS denotes differences
T15285 136-138 TO denotes to
T15284 132-135 JJ denotes due
T15283 129-131 VB denotes be
T15282 123-128 MD denotes might
T15281 117-122 WDT denotes which
T15280 115-116 , denotes ,
T15279 108-115 JJ denotes binding
T15278 104-107 NNP denotes DNA
T15277 97-103 NNP denotes NFIL-6
T15276 93-96 CC denotes and
T15275 84-92 NNP denotes NFATP2/3
T15274 81-83 IN denotes of
T15273 71-80 NN denotes induction
T15272 67-70 IN denotes via
T15271 57-66 RB denotes primarily
T15270 50-56 NN denotes IL-1RA
T15269 47-49 IN denotes of
T15268 36-46 NN denotes production
T15267 33-35 TO denotes to
T15266 27-32 VBZ denotes leads
T15265 24-26 NNP denotes GP
T15264 19-23 IN denotes that
T15263 9-18 VBD denotes indicated
T15262 4-8 NNS denotes data
T15261 0-3 PRP$ denotes Our
R10190 T15261 T15262 poss Our,data
R10191 T15262 T15263 nsubj data,indicated
R10193 T15263 T15263 ROOT indicated,indicated
R10194 T15264 T15266 mark that,leads
R10195 T15265 T15266 nsubj GP,leads
R10197 T15266 T15263 ccomp leads,indicated
R10198 T15267 T15266 prep to,leads
R10199 T15268 T15267 pobj production,to
R10201 T15269 T15268 prep of,production
R10202 T15270 T15269 pobj IL-1RA,of
R10203 T15271 T15272 advmod primarily,via
R10205 T15272 T15266 prep via,leads
R10206 T15273 T15272 pobj induction,via
R10207 T15274 T15273 prep of,induction
R10208 T15275 T15274 pobj NFATP2/3,of
R10209 T15276 T15275 cc and,NFATP2/3
R10211 T15277 T15278 compound NFIL-6,DNA
R10212 T15278 T15275 conj DNA,NFATP2/3
R10213 T15279 T15272 conj binding,via
R10215 T15280 T15266 punct ",",leads
R10216 T15281 T15283 nsubj which,be
R10217 T15282 T15283 aux might,be
R10219 T15283 T15266 advcl be,leads
R10220 T15284 T15283 acomp due,be
R10221 T15285 T15284 prep to,due
R10223 T15286 T15285 pobj differences,to
R10224 T15287 T15286 prep in,differences
R10225 T15288 T15290 det the,motif
R10227 T15289 T15290 amod binding,motif
R10228 T15290 T15287 pobj motif,in
R10229 T15291 T15290 cc or,motif
R10231 T15292 T15293 det the,composition
R10232 T15293 T15290 conj composition,motif
R10234 T15294 T15293 prep of,composition
R10235 T15295 T15298 det the,factors
R10236 T15296 T15298 amod activated,factors
R10238 T15297 T15298 compound transcription,factors
R10239 T15298 T15294 pobj factors,of
R10240 T15299 T15300 punct (,NFAT
R10242 T15300 T15298 appos NFAT,factors
R10243 T15301 T15298 punct ),factors
R10244 T15302 T15293 prep between,composition
R10245 T15303 T15304 det the,IFNγ
R10247 T15304 T15302 pobj IFNγ,between
R10248 T15305 T15304 punct ",",IFNγ
R10249 T15306 T15304 conj IL-6,IFNγ
R10251 T15307 T15306 cc and,IL-6
R10252 T15308 T15306 conj IL-1RA,IL-6
R10253 T15309 T15304 conj promoter,IFNγ
R10255 T15310 T15263 punct .,indicated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12285 71-80 Positive_regulation denotes induction
T12284 71-80 Positive_regulation denotes induction
T12283 27-32 Positive_regulation denotes leads
T12282 132-135 Regulation denotes due
T12281 108-115 Binding denotes binding
T12280 108-115 Binding denotes binding
T12279 71-80 Positive_regulation denotes induction
T12278 36-46 Gene_expression denotes production
T12277 264-279 Protein denotes IL-1RA promoter
T12276 249-259 Protein denotes IFNγ, IL-6
T12275 231-235 Protein denotes NFAT
T12274 198-229 Protein denotes activated transcription factors
T12273 97-107 Protein denotes NFIL-6 DNA
T12272 84-92 Protein denotes NFATP2/3
T12271 50-56 Protein denotes IL-1RA
T12270 24-26 Protein denotes GP
R7885 T12270 T12283 causeOf GP,leads
R7886 T12271 T12278 themeOf IL-1RA,production
R7887 T12272 T12279 themeOf NFATP2/3,induction
R7888 T12272 T12281 themeOf NFATP2/3,binding
R7889 T12273 T12280 themeOf NFIL-6 DNA,binding
R7890 T12273 T12281 themeOf NFIL-6 DNA,binding
R7891 T12275 T12282 causeOf NFAT,due
R7892 T12278 T12283 themeOf production,leads
R7893 T12279 T12282 themeOf induction,due
R7894 T12280 T12284 themeOf binding,induction
R7895 T12281 T12285 themeOf binding,induction

testone

Id Subject Object Predicate Lexical cue
T11390 264-270 Protein denotes IL-1RA
T11389 255-259 Protein denotes IL-6
T11388 249-253 Protein denotes IFNγ
T11387 231-235 Protein denotes NFAT
T11386 97-103 Protein denotes NFIL-6
T11385 91-92 Protein denotes 3
T11384 84-90 Protein denotes NFATP2
T11494 271-279 Entity denotes promoter
T11493 166-171 Entity denotes motif
T11492 158-165 Binding denotes binding
T11491 132-135 Positive_regulation denotes due
T11490 108-115 Binding denotes binding
T11489 71-80 Positive_regulation denotes induction
T11488 36-46 Gene_expression denotes production
T11487 27-32 Positive_regulation denotes leads
R7440 T11384 T11490 themeOf NFATP2,binding
R7441 T11385 T11490 themeOf 3,binding
R7442 T11386 T11490 themeOf NFIL-6,binding
R7497 T11488 T11487 themeOf production,leads
R7498 T11490 T11489 themeOf binding,induction
R7499 T11492 T11491 causeOf binding,due
R7500 T11494 T11390 partOf promoter,IL-1RA

test3

Id Subject Object Predicate Lexical cue
T11725 271-279 Entity denotes promoter
T11724 264-270 Protein denotes IL-1RA
T11723 255-259 Protein denotes IL-6
T11722 249-253 Protein denotes IFNγ
T11721 231-235 Protein denotes NFAT
T11720 158-165 Binding denotes binding
T11719 132-135 Positive_regulation denotes due
T11718 108-115 Binding denotes binding
T11717 97-103 Protein denotes NFIL-6
T11716 91-92 Protein denotes 3
T11715 84-90 Protein denotes NFATP2
T11714 71-80 Positive_regulation denotes induction
T11713 36-46 Gene_expression denotes production
T11593 264-270 Protein denotes IL-1RA
T11592 255-259 Protein denotes IL-6
T11591 249-253 Protein denotes IFNγ
T11590 231-235 Protein denotes NFAT
T11589 97-103 Protein denotes NFIL-6
T11588 91-92 Protein denotes 3
T11587 84-90 Protein denotes NFATP2
R7558 T11714 T11719 themeOf induction,due
R7559 T11715 T11718 themeOf NFATP2,binding
R7560 T11716 T11718 themeOf 3,binding
R7561 T11717 T11718 themeOf NFIL-6,binding
R7562 T11718 T11719 themeOf binding,due
R7563 T11718 T11714 themeOf binding,induction
R7564 T11725 T11720 themeOf promoter,binding