PMC:1472690 / 25909-26156
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T13197 | 178-182 | NN | denotes | site |
| T13196 | 170-177 | NN | denotes | NFκB2/3 |
| T13195 | 162-169 | DT | denotes | another |
| T13194 | 160-161 | -COMMA- | denotes | , |
| T13193 | 159-160 | -RRB- | denotes | ) |
| T13192 | 155-159 | CD | denotes | -280 |
| T13191 | 151-154 | CC | denotes | and |
| T13190 | 146-150 | CD | denotes | -266 |
| T13189 | 145-146 | -LRB- | denotes | ( |
| T13188 | 140-144 | NN | denotes | site |
| T13187 | 130-139 | NN | denotes | consensus |
| T13186 | 125-129 | NN | denotes | NFκB |
| T13185 | 122-124 | DT | denotes | an |
| T13184 | 120-121 | -COMMA- | denotes | , |
| T13183 | 119-120 | -RRB- | denotes | ) |
| T13182 | 115-119 | CD | denotes | -130 |
| T13181 | 111-114 | CC | denotes | and |
| T13180 | 106-110 | CD | denotes | -100 |
| T13179 | 98-105 | IN | denotes | between |
| T13178 | 97-98 | -LRB- | denotes | ( |
| T13177 | 92-96 | NN | denotes | site |
| T13176 | 86-91 | NN | denotes | NFκB3 |
| T13175 | 83-85 | DT | denotes | an |
| T13174 | 81-82 | -COLON- | denotes | : |
| T13173 | 80-81 | -RRB- | denotes | ) |
| T13172 | 79-80 | CD | denotes | 8 |
| T13171 | 74-78 | NN | denotes | Fig. |
| T13170 | 73-74 | -LRB- | denotes | ( |
| T13169 | 67-72 | NN | denotes | sites |
| T13168 | 59-66 | VB | denotes | binding |
| T13167 | 55-58 | JJ | denotes | new |
| T13166 | 50-54 | CD | denotes | four |
| T13165 | 39-49 | VB | denotes | discovered |
| T13164 | 36-38 | PRP | denotes | we |
| T13163 | 34-35 | -COMMA- | denotes | , |
| T13162 | 33-34 | -RRB- | denotes | ] |
| T13161 | 31-33 | CD | denotes | 34 |
| T13160 | 30-31 | -LRB- | denotes | [ |
| T13159 | 21-29 | NN | denotes | promoter |
| T13158 | 14-20 | NN | denotes | IL-1RA |
| T13157 | 10-13 | DT | denotes | the |
| T13156 | 0-9 | VB | denotes | Analysing |
| T13213 | 245-246 | -RRB- | denotes | ) |
| T13212 | 241-245 | CD | denotes | -490 |
| T13211 | 237-240 | CC | denotes | and |
| T13210 | 232-236 | CD | denotes | -471 |
| T13209 | 231-232 | -LRB- | denotes | ( |
| T13208 | 226-230 | NN | denotes | site |
| T13207 | 217-225 | NN | denotes | NFATP2/3 |
| T13206 | 210-216 | JJ | denotes | distal |
| T13205 | 205-209 | RB | denotes | more |
| T13204 | 203-204 | DT | denotes | a |
| T13203 | 199-202 | CC | denotes | and |
| T13202 | 197-198 | -RRB- | denotes | ) |
| T13201 | 193-197 | CD | denotes | -302 |
| T13200 | 189-192 | CC | denotes | and |
| T13199 | 184-188 | CD | denotes | -288 |
| T13198 | 183-184 | -LRB- | denotes | ( |
| R8314 | T13159 | T13156 | arg2Of | promoter,Analysing |
| R8315 | T13159 | T13157 | arg1Of | promoter,the |
| R8316 | T13159 | T13158 | arg1Of | promoter,IL-1RA |
| R8317 | T13159 | T13160 | arg1Of | promoter,[ |
| R8318 | T13161 | T13160 | arg2Of | 34,[ |
| R8319 | T13162 | T13160 | arg3Of | ],[ |
| R8320 | T13164 | T13156 | arg1Of | we,Analysing |
| R8321 | T13164 | T13165 | arg1Of | we,discovered |
| R8322 | T13165 | T13156 | modOf | discovered,Analysing |
| R8323 | T13165 | T13163 | arg1Of | discovered,"," |
| R8324 | T13169 | T13165 | arg2Of | sites,discovered |
| R8325 | T13169 | T13166 | arg1Of | sites,four |
| R8326 | T13169 | T13167 | arg1Of | sites,new |
| R8327 | T13169 | T13168 | arg1Of | sites,binding |
| R8328 | T13169 | T13170 | arg1Of | sites,( |
| R8329 | T13169 | T13174 | arg1Of | sites,: |
| R8330 | T13171 | T13170 | arg2Of | Fig.,( |
| R8331 | T13171 | T13172 | arg1Of | Fig.,8 |
| R8332 | T13173 | T13170 | arg3Of | ),( |
| R8333 | T13177 | T13174 | arg2Of | site,: |
| R8334 | T13177 | T13175 | arg1Of | site,an |
| R8335 | T13177 | T13176 | arg1Of | site,NFκB3 |
| R8336 | T13177 | T13178 | arg1Of | site,( |
| R8337 | T13177 | T13184 | arg1Of | site,"," |
| R8338 | T13177 | T13194 | arg1Of | site,"," |
| R8339 | T13179 | T13178 | arg2Of | between,( |
| R8340 | T13180 | T13181 | arg1Of | -100,and |
| R8341 | T13181 | T13179 | arg2Of | and,between |
| R8342 | T13182 | T13181 | arg2Of | -130,and |
| R8343 | T13183 | T13178 | arg3Of | ),( |
| R8344 | T13188 | T13184 | arg2Of | site,"," |
| R8345 | T13188 | T13185 | arg1Of | site,an |
| R8346 | T13188 | T13186 | arg1Of | site,NFκB |
| R8347 | T13188 | T13187 | arg1Of | site,consensus |
| R8348 | T13188 | T13189 | arg1Of | site,( |
| R8349 | T13190 | T13191 | arg1Of | -266,and |
| R8350 | T13191 | T13189 | arg2Of | and,( |
| R8351 | T13192 | T13191 | arg2Of | -280,and |
| R8352 | T13193 | T13189 | arg3Of | ),( |
| R8353 | T13197 | T13195 | arg1Of | site,another |
| R8354 | T13197 | T13196 | arg1Of | site,NFκB2/3 |
| R8355 | T13197 | T13198 | arg1Of | site,( |
| R8356 | T13197 | T13203 | arg1Of | site,and |
| R8357 | T13199 | T13200 | arg1Of | -288,and |
| R8358 | T13200 | T13198 | arg2Of | and,( |
| R8359 | T13201 | T13200 | arg2Of | -302,and |
| R8360 | T13202 | T13198 | arg3Of | ),( |
| R8361 | T13203 | T13194 | arg2Of | and,"," |
| R8362 | T13206 | T13205 | arg1Of | distal,more |
| R8363 | T13208 | T13203 | arg2Of | site,and |
| R8364 | T13208 | T13204 | arg1Of | site,a |
| R8365 | T13208 | T13206 | arg1Of | site,distal |
| R8366 | T13208 | T13207 | arg1Of | site,NFATP2/3 |
| R8367 | T13208 | T13209 | arg1Of | site,( |
| R8368 | T13210 | T13211 | arg1Of | -471,and |
| R8369 | T13211 | T13209 | arg2Of | and,( |
| R8370 | T13212 | T13211 | arg2Of | -490,and |
| R8371 | T13213 | T13209 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12334 | 14-20 | Protein | denotes | IL-1RA |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14254 | 14-20 | http://www.uniprot.org/uniprot/P18510 | denotes | IL-1RA |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12534 | 59-66 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11862 | 0-247 | Sentence | denotes | Analysing the IL-1RA promoter [34], we discovered four new binding sites (Fig. 8): an NFκB3 site (between -100 and -130), an NFκB consensus site (-266 and -280), another NFκB2/3 site (-288 and -302) and a more distal NFATP2/3 site (-471 and -490). |
| T190 | 0-247 | Sentence | denotes | Analysing the IL-1RA promoter [34], we discovered four new binding sites (Fig. 8): an NFκB3 site (between -100 and -130), an NFκB consensus site (-266 and -280), another NFκB2/3 site (-288 and -302) and a more distal NFATP2/3 site (-471 and -490). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12713 | 14-20 | Protein | denotes | IL-1RA |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16551 | 14-20 | Protein | denotes | IL-1RA |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14359 | 14-20 | Protein | denotes | IL-1RA |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T14534 | 14-20 | Protein | denotes | IL-1RA |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16928 | 217-225 | Protein | denotes | NFATP2/3 |
| T16889 | 125-129 | Protein | denotes | NFκB |
| T16839 | 10-34 | Entity | denotes | the IL-1RA promoter [34] |
| T16826 | 122-160 | Entity | denotes | an NFκB consensus site (-266 and -280) |
| T16818 | 14-20 | Protein | denotes | IL-1RA |
| T16776 | 176-177 | Protein | denotes | 3 |
| T16760 | 92-120 | Entity | denotes | site (between -100 and -130) |
| T16756 | 50-81 | Entity | denotes | four new binding sites (Fig. 8) |
| T16754 | 224-225 | Protein | denotes | 3 |
| T16729 | 217-225 | Protein | denotes | NFATP2/3 |
| T16704 | 162-198 | Entity | denotes | another NFκB2/3 site (-288 and -302) |
| T16697 | 203-246 | Entity | denotes | a more distal NFATP2/3 site (-471 and -490) |
| T16947 | 50-81 | Binding | denotes | four new binding sites (Fig. 8) |
| R11485 | T16839 | T16818 | partOf | the IL-1RA promoter [34],IL-1RA |
| R11443 | T16756 | T16947 | themeOf | four new binding sites (Fig. 8),four new binding sites (Fig. 8) |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15260 | 246-247 | . | denotes | . |
| T15259 | 245-246 | -RRB- | denotes | ) |
| T15258 | 241-245 | CD | denotes | -490 |
| T15257 | 237-240 | CC | denotes | and |
| T15256 | 232-236 | CD | denotes | -471 |
| T15255 | 231-232 | -LRB- | denotes | ( |
| T15254 | 226-230 | NN | denotes | site |
| T15253 | 217-225 | CD | denotes | NFATP2/3 |
| T15252 | 210-216 | JJ | denotes | distal |
| T15251 | 205-209 | RBR | denotes | more |
| T15250 | 203-204 | DT | denotes | a |
| T15249 | 199-202 | CC | denotes | and |
| T15248 | 197-198 | -RRB- | denotes | ) |
| T15247 | 193-197 | CD | denotes | -302 |
| T15246 | 189-192 | CC | denotes | and |
| T15245 | 184-188 | CD | denotes | -288 |
| T15244 | 183-184 | -LRB- | denotes | ( |
| T15243 | 178-182 | NN | denotes | site |
| T15242 | 176-177 | CD | denotes | 3 |
| T15241 | 175-176 | NN | denotes | / |
| T15240 | 170-175 | NNP | denotes | NFκB2 |
| T15239 | 162-169 | DT | denotes | another |
| T15238 | 160-161 | , | denotes | , |
| T15237 | 159-160 | -RRB- | denotes | ) |
| T15236 | 155-159 | CD | denotes | -280 |
| T15235 | 151-154 | CC | denotes | and |
| T15234 | 146-150 | CD | denotes | -266 |
| T15233 | 145-146 | -LRB- | denotes | ( |
| T15232 | 140-144 | NN | denotes | site |
| T15231 | 130-139 | NN | denotes | consensus |
| T15230 | 125-129 | NNP | denotes | NFκB |
| T15229 | 122-124 | DT | denotes | an |
| T15228 | 120-121 | , | denotes | , |
| T15227 | 119-120 | -RRB- | denotes | ) |
| T15226 | 115-119 | CD | denotes | -130 |
| T15225 | 111-114 | CC | denotes | and |
| T15224 | 106-110 | CD | denotes | -100 |
| T15223 | 98-105 | IN | denotes | between |
| T15222 | 97-98 | -LRB- | denotes | ( |
| T15221 | 92-96 | NN | denotes | site |
| T15220 | 86-91 | JJ | denotes | NFκB3 |
| T15219 | 83-85 | DT | denotes | an |
| T15218 | 81-82 | : | denotes | : |
| T15217 | 80-81 | -RRB- | denotes | ) |
| T15216 | 79-80 | CD | denotes | 8 |
| T15215 | 74-78 | NN | denotes | Fig. |
| T15214 | 73-74 | -LRB- | denotes | ( |
| T15213 | 67-72 | NNS | denotes | sites |
| T15212 | 59-66 | JJ | denotes | binding |
| T15211 | 55-58 | JJ | denotes | new |
| T15210 | 50-54 | CD | denotes | four |
| T15209 | 39-49 | VBD | denotes | discovered |
| T15208 | 36-38 | PRP | denotes | we |
| T15207 | 34-35 | , | denotes | , |
| T15206 | 33-34 | NNP | denotes | ] |
| T15205 | 31-33 | CD | denotes | 34 |
| T15204 | 30-31 | NNP | denotes | [ |
| T15203 | 21-29 | NN | denotes | promoter |
| T15202 | 14-20 | NN | denotes | IL-1RA |
| T15201 | 10-13 | DT | denotes | the |
| T15200 | 0-9 | VBG | denotes | Analysing |
| R10108 | T15200 | T15209 | advcl | Analysing,discovered |
| R10109 | T15201 | T15203 | det | the,promoter |
| R10110 | T15202 | T15203 | compound | IL-1RA,promoter |
| R10111 | T15203 | T15200 | dobj | promoter,Analysing |
| R10113 | T15204 | T15206 | nmod | [,] |
| R10114 | T15205 | T15206 | nummod | 34,] |
| R10115 | T15206 | T15203 | appos | ],promoter |
| R10117 | T15207 | T15209 | punct | ",",discovered |
| R10118 | T15208 | T15209 | nsubj | we,discovered |
| R10119 | T15209 | T15209 | ROOT | discovered,discovered |
| R10121 | T15210 | T15213 | nummod | four,sites |
| R10122 | T15211 | T15213 | amod | new,sites |
| R10123 | T15212 | T15213 | amod | binding,sites |
| R10124 | T15213 | T15209 | dobj | sites,discovered |
| R10126 | T15214 | T15213 | punct | (,sites |
| R10127 | T15215 | T15217 | nmod | Fig.,) |
| R10128 | T15216 | T15215 | nummod | 8,Fig. |
| R10130 | T15217 | T15213 | punct | ),sites |
| R10131 | T15218 | T15213 | punct | :,sites |
| R10132 | T15219 | T15221 | det | an,site |
| R10134 | T15220 | T15221 | amod | NFκB3,site |
| R10135 | T15221 | T15213 | appos | site,sites |
| R10136 | T15222 | T15221 | punct | (,site |
| R10138 | T15223 | T15221 | prep | between,site |
| R10139 | T15224 | T15223 | pobj | -100,between |
| R10141 | T15225 | T15224 | cc | and,-100 |
| R10142 | T15226 | T15224 | conj | -130,-100 |
| R10143 | T15227 | T15221 | punct | ),site |
| R10145 | T15228 | T15221 | punct | ",",site |
| R10146 | T15229 | T15232 | det | an,site |
| R10147 | T15230 | T15232 | compound | NFκB,site |
| R10149 | T15231 | T15232 | compound | consensus,site |
| R10150 | T15232 | T15221 | conj | site,site |
| R10151 | T15233 | T15232 | punct | (,site |
| R10153 | T15234 | T15232 | appos | -266,site |
| R10154 | T15235 | T15232 | cc | and,site |
| R10156 | T15236 | T15232 | conj | -280,site |
| R10157 | T15237 | T15213 | punct | ),sites |
| R10158 | T15238 | T15213 | punct | ",",sites |
| R10159 | T15239 | T15243 | det | another,site |
| R10160 | T15240 | T15241 | compound | NFκB2,/ |
| R10161 | T15241 | T15243 | nmod | /,site |
| R10162 | T15242 | T15241 | nummod | 3,/ |
| R10164 | T15243 | T15213 | appos | site,sites |
| R10165 | T15244 | T15243 | punct | (,site |
| R10166 | T15245 | T15243 | appos | -288,site |
| R10168 | T15246 | T15243 | cc | and,site |
| R10169 | T15247 | T15243 | conj | -302,site |
| R10170 | T15248 | T15243 | punct | ),site |
| R10172 | T15249 | T15243 | cc | and,site |
| R10173 | T15250 | T15254 | det | a,site |
| R10174 | T15251 | T15252 | advmod | more,distal |
| R10176 | T15252 | T15254 | amod | distal,site |
| R10177 | T15253 | T15254 | nummod | NFATP2/3,site |
| R10178 | T15254 | T15243 | conj | site,site |
| R10180 | T15255 | T15254 | punct | (,site |
| R10181 | T15256 | T15254 | appos | -471,site |
| R10182 | T15257 | T15256 | cc | and,-471 |
| R10183 | T15258 | T15256 | conj | -490,-471 |
| R10185 | T15259 | T15254 | punct | ),site |
| R10188 | T15260 | T15209 | punct | .,discovered |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12269 | 30-33 | Entity | denotes | [34 |
| T12268 | 170-182 | Protein | denotes | NFκB2/3 site |
| T12267 | 125-129 | Protein | denotes | NFκB |
| T12266 | 86-91 | Protein | denotes | NFκB3 |
| T12265 | 14-29 | Protein | denotes | IL-1RA promoter |
| R7884 | T12265 | T12269 | partOf | IL-1RA promoter,[34 |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11383 | 14-20 | Protein | denotes | IL-1RA |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11712 | 14-20 | Protein | denotes | IL-1RA |
| T11586 | 14-20 | Protein | denotes | IL-1RA |