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PMC:1472690 / 25269-25446 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13075 168-176 JJ denotes possible
T13074 163-167 RB denotes also
T13073 157-162 VB denotes seems
T13072 155-156 -RRB- denotes ]
T13071 153-155 CD denotes 38
T13070 152-153 -LRB- denotes [
T13069 147-151 NN denotes site
T13068 140-146 NN denotes IL-8κB
T13067 136-139 DT denotes the
T13066 133-135 TO denotes to
T13065 125-132 VB denotes binding
T13064 119-124 NN denotes dimer
T13063 112-118 NN denotes NFATc2
T13062 109-111 CC denotes or
T13061 107-108 -RRB- denotes ]
T13060 102-107 CD denotes 13,39
T13059 101-102 -LRB- denotes [
T13058 94-100 NN denotes NFIL-6
T13057 90-93 CC denotes and
T13056 86-89 NN denotes p65
T13055 81-85 NN denotes NFκB
T13054 66-80 VB denotes transactivated
T13053 58-65 IN denotes between
T13052 46-57 NN denotes cooperation
T13051 44-45 DT denotes a
T13050 39-43 IN denotes upon
T13049 33-38 VB denotes based
T13048 19-32 NN denotes transcription
T13047 14-18 NN denotes IL-8
T13046 2-13 JJ denotes GP-mediated
T13045 0-1 DT denotes A
R8203 T13048 T13045 arg1Of transcription,A
R8204 T13048 T13046 arg1Of transcription,GP-mediated
R8205 T13048 T13047 arg1Of transcription,IL-8
R8206 T13048 T13049 arg2Of transcription,based
R8207 T13048 T13073 arg1Of transcription,seems
R8208 T13048 T13075 arg1Of transcription,possible
R8209 T13049 T13050 arg1Of based,upon
R8210 T13052 T13050 arg2Of cooperation,upon
R8211 T13052 T13051 arg1Of cooperation,a
R8212 T13052 T13053 arg1Of cooperation,between
R8213 T13056 T13054 arg2Of p65,transactivated
R8214 T13056 T13055 arg1Of p65,NFκB
R8215 T13056 T13057 arg1Of p65,and
R8216 T13057 T13062 arg1Of and,or
R8217 T13058 T13057 arg2Of NFIL-6,and
R8218 T13058 T13059 arg1Of NFIL-6,[
R8219 T13060 T13059 arg2Of "13,39",[
R8220 T13061 T13059 arg3Of ],[
R8221 T13062 T13053 arg2Of or,between
R8222 T13064 T13062 arg2Of dimer,or
R8223 T13064 T13063 arg1Of dimer,NFATc2
R8224 T13064 T13065 arg1Of dimer,binding
R8225 T13065 T13066 arg1Of binding,to
R8226 T13065 T13070 arg1Of binding,[
R8227 T13069 T13066 arg2Of site,to
R8228 T13069 T13067 arg1Of site,the
R8229 T13069 T13068 arg1Of site,IL-8κB
R8230 T13071 T13070 arg2Of 38,[
R8231 T13072 T13070 arg3Of ],[
R8232 T13073 T13074 arg1Of seems,also
R8233 T13075 T13073 arg2Of possible,seems

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12326 140-144 Protein denotes IL-8
T12325 112-118 Protein denotes NFATc2
T12324 94-100 Protein denotes NFIL-6
T12323 86-89 Protein denotes p65
T12322 14-18 Protein denotes IL-8

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14285 86-89 http://www.uniprot.org/uniprot/P21579 denotes p65
T14280 86-89 http://www.uniprot.org/uniprot/Q04206 denotes p65
T14247 14-18 http://www.uniprot.org/uniprot/P10145 denotes IL-8

GO-BP

Id Subject Object Predicate Lexical cue
T11914 19-32 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T12558 14-18 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8
T12550 125-142 http://purl.obolibrary.org/obo/GO_0019955 denotes binding to the IL
T12531 125-132 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11859 0-177 Sentence denotes A GP-mediated IL-8 transcription based upon a cooperation between transactivated NFκB p65 and NFIL-6 [13,39] or NFATc2 dimer binding to the IL-8κB site [38] seems also possible.
T187 0-177 Sentence denotes A GP-mediated IL-8 transcription based upon a cooperation between transactivated NFκB p65 and NFIL-6 [13,39] or NFATc2 dimer binding to the IL-8κB site [38] seems also possible.

simple1

Id Subject Object Predicate Lexical cue
T12705 140-144 Protein denotes IL-8
T12704 112-118 Protein denotes NFATc2
T12703 94-100 Protein denotes NFIL-6
T12702 86-89 Protein denotes p65
T12701 14-18 Protein denotes IL-8

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16543 140-144 Protein denotes IL-8
T16542 112-118 Protein denotes NFATc2
T16541 94-100 Protein denotes NFIL-6
T16540 86-89 Protein denotes p65
T16539 14-18 Protein denotes IL-8
T16643 19-32 Transcription denotes transcription
T16642 2-13 Positive_regulation denotes GP-mediated
T16641 125-132 Binding denotes binding
T16640 66-80 Positive_regulation denotes transactivated
R11350 T16539 T16643 themeOf IL-8,transcription
R11351 T16540 T16640 themeOf p65,transactivated
R11352 T16541 T16640 themeOf NFIL-6,transactivated
R11353 T16541 T16641 themeOf NFIL-6,binding
R11354 T16542 T16641 themeOf NFATc2,binding
R11436 T16643 T16642 themeOf transcription,GP-mediated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14351 140-144 Protein denotes IL-8
T14350 112-118 Protein denotes NFATc2
T14349 94-100 Protein denotes NFIL-6
T14348 86-89 Protein denotes p65
T14347 14-18 Protein denotes IL-8
T14455 19-32 Transcription denotes transcription
T14454 2-13 Positive_regulation denotes GP-mediated
T14453 125-132 Binding denotes binding
T14452 66-80 Positive_regulation denotes transactivated
T14451 102-107 Positive_regulation denotes 13,39
R9442 T14347 T14455 themeOf IL-8,transcription
R9443 T14349 T14452 themeOf NFIL-6,transactivated
R9446 T14349 T14451 themeOf NFIL-6,"13,39"
R9447 T14349 T14453 themeOf NFIL-6,binding
R9448 T14350 T14453 themeOf NFATc2,binding
R9451 T14350 T14453 themeOf NFATc2,binding
R9453 T14351 T14453 themeOf IL-8,binding
R9471 T14453 T14451 themeOf binding,"13,39"
R9472 T14453 T14451 themeOf binding,"13,39"
R9473 T14455 T14454 themeOf transcription,GP-mediated

DLUT931

Id Subject Object Predicate Lexical cue
T14526 140-144 Protein denotes IL-8
T14525 112-118 Protein denotes NFATc2
T14524 94-100 Protein denotes NFIL-6
T14523 86-89 Protein denotes p65
T14522 14-18 Protein denotes IL-8
T14632 2-13 Positive_regulation denotes GP-mediated
T14631 125-132 Binding denotes binding
T14630 66-80 Positive_regulation denotes transactivated
T14629 46-57 Binding denotes cooperation
T14628 19-32 Transcription denotes transcription
R9569 T14522 T14628 themeOf IL-8,transcription
R9571 T14523 T14629 themeOf p65,cooperation
R9572 T14523 T14630 themeOf p65,transactivated
R9573 T14523 T14631 themeOf p65,binding
R9575 T14525 T14631 themeOf NFATc2,binding
R9675 T14628 T14632 themeOf transcription,GP-mediated
R9677 T14631 T14630 themeOf binding,transactivated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16940 94-156 Binding denotes NFIL-6 [13,39] or NFATc2 dimer binding to the IL-8κB site [38]
T16920 81-85 Protein denotes NFκB
T16882 14-18 Protein denotes IL-8
T16844 81-89 Protein denotes NFκB p65
T16812 94-108 Protein denotes NFIL-6 [13,39]
T16806 94-156 Entity denotes NFIL-6 [13,39] or NFATc2 dimer binding to the IL-8κB site [38]
T16775 133-156 Entity denotes to the IL-8κB site [38]
T16758 112-118 Protein denotes NFATc2
T16953 0-32 Transcription denotes A GP-mediated IL-8 transcription
R11475 T16806 T16940 themeOf "NFIL-6 [13,39] or NFATc2 dimer binding to the IL-8κB site [38]","NFIL-6 [13,39] or NFATc2 dimer binding to the IL-8κB site [38]"
R11490 T16882 T16953 themeOf IL-8,A GP-mediated IL-8 transcription

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15117 176-177 . denotes .
T15116 168-176 JJ denotes possible
T15115 163-167 RB denotes also
T15114 157-162 VBZ denotes seems
T15113 155-156 NNP denotes ]
T15112 153-155 CD denotes 38
T15111 152-153 NNP denotes [
T15110 147-151 NN denotes site
T15109 140-146 NN denotes IL-8κB
T15108 136-139 DT denotes the
T15107 133-135 TO denotes to
T15106 125-132 JJ denotes binding
T15105 119-124 NN denotes dimer
T15104 112-118 NNP denotes NFATc2
T15103 109-111 CC denotes or
T15102 107-108 NNP denotes ]
T15101 102-107 CD denotes 13,39
T15100 101-102 NNP denotes [
T15099 94-100 NNP denotes NFIL-6
T15098 90-93 CC denotes and
T15097 86-89 CD denotes p65
T15096 81-85 NNP denotes NFκB
T15095 66-80 VBN denotes transactivated
T15094 58-65 IN denotes between
T15093 46-57 NN denotes cooperation
T15092 44-45 DT denotes a
T15091 39-43 IN denotes upon
T15090 33-38 VBN denotes based
T15089 19-32 NN denotes transcription
T15088 14-18 NN denotes IL-8
T15087 2-13 JJ denotes GP-mediated
T15086 0-1 DT denotes A
R9953 T15086 T15089 det A,transcription
R9955 T15087 T15089 amod GP-mediated,transcription
R9956 T15088 T15089 compound IL-8,transcription
R9957 T15089 T15114 nsubj transcription,seems
R9958 T15090 T15089 acl based,transcription
R9959 T15091 T15090 prep upon,based
R9960 T15092 T15093 det a,cooperation
R9961 T15093 T15091 pobj cooperation,upon
R9963 T15094 T15093 prep between,cooperation
R9964 T15095 T15096 compound transactivated,NFκB
R9965 T15096 T15094 pobj NFκB,between
R9967 T15097 T15096 nummod p65,NFκB
R9968 T15098 T15096 cc and,NFκB
R9969 T15099 T15100 compound NFIL-6,[
R9971 T15100 T15096 conj [,NFκB
R9972 T15101 T15102 compound "13,39",]
R9973 T15102 T15096 conj ],NFκB
R9975 T15103 T15102 cc or,]
R9976 T15104 T15102 conj NFATc2,]
R9977 T15105 T15106 advmod dimer,binding
R9980 T15106 T15093 amod binding,cooperation
R9981 T15107 T15106 prep to,binding
R9983 T15108 T15110 det the,site
R9984 T15109 T15110 compound IL-8κB,site
R9985 T15110 T15107 pobj site,to
R9986 T15111 T15113 compound [,]
R9988 T15112 T15113 compound 38,]
R9989 T15113 T15114 nsubj ],seems
R9990 T15114 T15114 ROOT seems,seems
R9992 T15115 T15116 advmod also,possible
R9993 T15116 T15114 oprd possible,seems
R9995 T15117 T15114 punct .,seems

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12250 125-132 Binding denotes binding
T12249 125-132 Binding denotes binding
T12248 66-80 Positive_regulation denotes transactivated
T12247 140-151 Protein denotes IL-8κB site
T12246 112-118 Protein denotes NFATc2
T12245 94-100 Protein denotes NFIL-6
T12244 81-89 Protein denotes NFκB p65
R7875 T12244 T12248 themeOf NFκB p65,transactivated
R7876 T12246 T12249 themeOf NFATc2,binding
R7877 T12246 T12250 themeOf NFATc2,binding
R7878 T12247 T12250 themeOf IL-8κB site,binding

testone

Id Subject Object Predicate Lexical cue
T11375 140-144 Protein denotes IL-8
T11374 112-118 Protein denotes NFATc2
T11373 94-100 Protein denotes NFIL-6
T11372 86-89 Protein denotes p65
T11371 14-18 Protein denotes IL-8
T11480 147-151 Entity denotes site
T11479 125-132 Binding denotes binding
T11478 119-124 Binding denotes dimer
T11477 19-32 Transcription denotes transcription
T11476 5-13 Positive_regulation denotes mediated
R7432 T11371 T11477 themeOf IL-8,transcription
R7433 T11372 T11479 themeOf p65,binding
R7434 T11373 T11476 causeOf NFIL-6,mediated
R7435 T11373 T11479 themeOf NFIL-6,binding
R7495 T11477 T11476 themeOf transcription,mediated

test3

Id Subject Object Predicate Lexical cue
T11700 140-144 Protein denotes IL-8
T11699 125-132 Binding denotes binding
T11698 112-118 Protein denotes NFATc2
T11697 94-100 Protein denotes NFIL-6
T11696 86-89 Protein denotes p65
T11695 19-32 Transcription denotes transcription
T11694 14-18 Protein denotes IL-8
T11693 5-13 Positive_regulation denotes mediated
T11578 140-144 Protein denotes IL-8
T11577 112-118 Protein denotes NFATc2
T11576 94-100 Protein denotes NFIL-6
T11575 86-89 Protein denotes p65
T11574 14-18 Protein denotes IL-8
R7548 T11694 T11695 themeOf IL-8,transcription
R7549 T11695 T11693 themeOf transcription,mediated
R7550 T11696 T11699 themeOf p65,binding
R7551 T11697 T11699 themeOf NFIL-6,binding
R7552 T11698 T11699 themeOf NFATc2,binding
R7553 T11700 T11699 themeOf IL-8,binding