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PMC:1472690 / 18517-18872 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T23988 353-354 -RRB- denotes )
T23987 346-353 NN denotes methods
T23986 342-345 VB denotes see
T23985 341-342 -LRB- denotes (
T23984 336-340 NN denotes EMSA
T23983 333-335 IN denotes by
T23982 324-332 VB denotes assessed
T23981 320-323 VB denotes was
T23980 312-319 NN denotes binding
T23979 308-311 NN denotes DNA
T23978 305-306 -RRB- denotes )
T23977 304-305 CD denotes 6
T23976 302-303 JJ denotes =
T23975 300-301 NN denotes n
T23974 299-300 -LRB- denotes (
T23973 295-298 NN denotes SEM
T23972 293-294 CC denotes ±
T23971 291-292 CD denotes 1
T23970 288-290 TO denotes to
T23969 282-287 JJ denotes equal
T23968 278-281 VB denotes set
T23967 273-277 VB denotes were
T23966 266-272 NN denotes levels
T23965 258-265 NN denotes control
T23964 251-257 NN denotes Medium
T23963 248-249 -RRB- denotes )
T23962 244-248 CD denotes 0.01
T23961 242-243 SYM denotes <
T23960 240-241 NN denotes p
T23959 238-239 SYM denotes =
T23958 235-237 SYM denotes **
T23957 233-234 -COLON- denotes ;
T23956 229-233 CD denotes 0.05
T23955 227-228 SYM denotes <
T23954 225-226 NN denotes p
T23953 223-224 SYM denotes =
T23952 221-222 SYM denotes *
T23951 220-221 -LRB- denotes (
T23950 207-219 RB denotes respectively
T23949 205-206 -COMMA- denotes ,
T23948 200-205 NN denotes calc.
T23947 190-199 NN denotes GP/TSST-1
T23946 187-189 CC denotes or
T23945 181-186 NN denotes calc.
T23944 174-180 NN denotes GP/LPS
T23943 172-173 -COMMA- denotes ,
T23942 170-172 NN denotes GP
T23941 168-169 -COMMA- denotes ,
T23940 162-168 NN denotes TSST-1
T23939 160-161 -COMMA- denotes ,
T23938 157-160 NN denotes LPS
T23937 154-156 TO denotes to
T23936 145-153 VB denotes compared
T23935 140-144 WRB denotes when
T23934 138-139 -COMMA- denotes ,
T23933 132-138 NN denotes TSST-1
T23932 130-131 SYM denotes +
T23931 127-129 NN denotes GP
T23930 123-126 CC denotes and
T23929 119-122 NN denotes LPS
T23928 117-118 SYM denotes +
T23927 114-116 NN denotes GP
T23926 110-113 IN denotes for
T23925 101-109 VB denotes enhanced
T23924 97-100 VB denotes was
T23923 89-96 NN denotes Binding
T23922 79-87 NN denotes promoter
T23921 72-78 NN denotes IL-1RA
T23920 68-71 DT denotes the
T23919 65-67 IN denotes in
T23918 60-64 NN denotes site
T23917 54-59 NN denotes NFκB3
T23916 50-53 JJ denotes new
T23915 48-49 DT denotes a
T23914 45-47 TO denotes to
T23913 37-44 NN denotes binding
T23912 22-36 JJ denotes TSST-1-induced
T23911 18-21 CC denotes and
T23910 13-17 NN denotes LPS-
T23909 3-12 VB denotes modulated
T23908 0-2 NN denotes GP
R16260 T23908 T23909 arg1Of GP,modulated
R16261 T23910 T23911 arg1Of LPS-,and
R16262 T23911 T23909 arg2Of and,modulated
R16263 T23913 T23911 arg2Of binding,and
R16264 T23913 T23912 arg1Of binding,TSST-1-induced
R16265 T23913 T23914 arg1Of binding,to
R16266 T23918 T23914 arg2Of site,to
R16267 T23918 T23915 arg1Of site,a
R16268 T23918 T23916 arg1Of site,new
R16269 T23918 T23917 arg1Of site,NFκB3
R16270 T23918 T23919 arg1Of site,in
R16271 T23922 T23919 arg2Of promoter,in
R16272 T23922 T23920 arg1Of promoter,the
R16273 T23922 T23921 arg1Of promoter,IL-1RA
R16274 T23923 T23924 arg1Of Binding,was
R16275 T23923 T23925 arg2Of Binding,enhanced
R16276 T23925 T23924 arg2Of enhanced,was
R16277 T23925 T23926 arg1Of enhanced,for
R16278 T23925 T23934 arg1Of enhanced,","
R16279 T23925 T23935 arg1Of enhanced,when
R16280 T23929 T23927 arg1Of LPS,GP
R16281 T23929 T23928 arg1Of LPS,+
R16282 T23929 T23930 arg1Of LPS,and
R16283 T23930 T23926 arg2Of and,for
R16284 T23933 T23930 arg2Of TSST-1,and
R16285 T23933 T23931 arg1Of TSST-1,GP
R16286 T23933 T23932 arg1Of TSST-1,+
R16287 T23936 T23935 arg2Of compared,when
R16288 T23936 T23937 arg1Of compared,to
R16289 T23938 T23939 arg1Of LPS,","
R16290 T23939 T23941 arg1Of ",",","
R16291 T23940 T23939 arg2Of TSST-1,","
R16292 T23941 T23943 arg1Of ",",","
R16293 T23942 T23941 arg2Of GP,","
R16294 T23943 T23937 arg2Of ",",to
R16295 T23943 T23949 arg1Of ",",","
R16296 T23943 T23950 arg1Of ",",respectively
R16297 T23945 T23944 arg1Of calc.,GP/LPS
R16298 T23945 T23946 arg1Of calc.,or
R16299 T23946 T23943 arg2Of or,","
R16300 T23948 T23946 arg2Of calc.,or
R16301 T23948 T23947 arg1Of calc.,GP/TSST-1
R16302 T23950 T23951 arg1Of respectively,(
R16303 T23956 T23951 arg2Of 0.05,(
R16304 T23956 T23952 arg1Of 0.05,*
R16305 T23956 T23953 arg1Of 0.05,=
R16306 T23956 T23954 arg1Of 0.05,p
R16307 T23956 T23955 arg1Of 0.05,<
R16308 T23956 T23957 arg1Of 0.05,;
R16309 T23956 T23962 arg1Of 0.05,0.01
R16310 T23960 T23957 arg2Of p,;
R16311 T23960 T23958 arg1Of p,**
R16312 T23960 T23959 arg1Of p,=
R16313 T23960 T23961 arg1Of p,<
R16314 T23963 T23951 arg3Of ),(
R16315 T23966 T23964 arg1Of levels,Medium
R16316 T23966 T23965 arg1Of levels,control
R16317 T23966 T23967 arg1Of levels,were
R16318 T23966 T23968 arg2Of levels,set
R16319 T23966 T23969 arg1Of levels,equal
R16320 T23968 T23967 arg2Of set,were
R16321 T23969 T23968 arg3Of equal,set
R16322 T23969 T23970 arg1Of equal,to
R16323 T23971 T23972 arg1Of 1,±
R16324 T23972 T23970 arg2Of ±,to
R16325 T23972 T23974 arg1Of ±,(
R16326 T23973 T23972 arg2Of SEM,±
R16327 T23975 T23976 arg1Of n,=
R16328 T23976 T23974 arg2Of =,(
R16329 T23977 T23976 arg2Of 6,=
R16330 T23978 T23974 arg3Of ),(
R16331 T23980 T23979 arg1Of binding,DNA
R16332 T23980 T23981 arg1Of binding,was
R16333 T23980 T23982 arg2Of binding,assessed
R16334 T23982 T23981 arg2Of assessed,was
R16335 T23982 T23985 arg1Of assessed,(
R16336 T23984 T23982 arg1Of EMSA,assessed
R16337 T23984 T23983 arg2Of EMSA,by
R16338 T23986 T23985 arg2Of see,(
R16339 T23987 T23986 arg2Of methods,see
R16340 T23988 T23985 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23893 193-199 Protein denotes TSST-1
T23892 162-168 Protein denotes TSST-1
T23891 132-138 Protein denotes TSST-1
T23890 72-78 Protein denotes IL-1RA
T23889 22-28 Protein denotes TSST-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T23993 72-78 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T23992 193-199 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T23991 162-168 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T23990 132-138 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T23989 22-28 http://www.uniprot.org/uniprot/P06886 denotes TSST-1

GO-MF

Id Subject Object Predicate Lexical cue
T23897 308-319 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T23896 89-109 http://purl.obolibrary.org/obo/GO_0035326 denotes Binding was enhanced
T23895 312-319 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23894 37-44 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T23879 308-355 Sentence denotes DNA binding was assessed by EMSA (see methods).
T23878 251-307 Sentence denotes Medium control levels were set equal to 1 ± SEM (n = 6).
T23877 89-250 Sentence denotes Binding was enhanced for GP + LPS and GP + TSST-1, when compared to LPS, TSST-1, GP, GP/LPS calc. or GP/TSST-1 calc., respectively (* = p < 0.05; ** = p < 0.01).
T23876 0-88 Sentence denotes GP modulated LPS- and TSST-1-induced binding to a new NFκB3 site in the IL-1RA promoter.
T138 89-250 Sentence denotes Binding was enhanced for GP + LPS and GP + TSST-1, when compared to LPS, TSST-1, GP, GP/LPS calc. or GP/TSST-1 calc., respectively (* = p < 0.05; ** = p < 0.01).
T139 251-307 Sentence denotes Medium control levels were set equal to 1 ± SEM (n = 6).
T140 308-355 Sentence denotes DNA binding was assessed by EMSA (see methods).

simple1

Id Subject Object Predicate Lexical cue
T23907 193-199 Protein denotes TSST-1
T23906 162-168 Protein denotes TSST-1
T23905 132-138 Protein denotes TSST-1
T23904 72-78 Protein denotes IL-1RA
T23903 22-28 Protein denotes TSST-1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T24135 101-109 Positive_regulation denotes enhanced
T24134 193-199 Protein denotes TSST-1
T24133 162-168 Protein denotes TSST-1
T24132 132-138 Protein denotes TSST-1
T24131 72-78 Protein denotes IL-1RA
T24130 22-28 Protein denotes TSST-1
R16445 T24133 T24135 themeOf TSST-1,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24003 89-96 Binding denotes Binding
T24002 101-109 Positive_regulation denotes enhanced
T24001 29-36 Positive_regulation denotes induced
T24000 3-12 Positive_regulation denotes modulated
T23999 37-44 Binding denotes binding
T23998 193-199 Protein denotes TSST-1
T23997 162-168 Protein denotes TSST-1
T23996 132-138 Protein denotes TSST-1
T23995 72-78 Protein denotes IL-1RA
T23994 22-28 Protein denotes TSST-1
R16341 T23994 T24001 causeOf TSST-1,induced
R16342 T23995 T23999 themeOf IL-1RA,binding
R16343 T23997 T24003 themeOf TSST-1,Binding
R16344 T23999 T24000 themeOf binding,modulated
R16345 T23999 T24001 themeOf binding,induced
R16346 T24001 T24000 themeOf induced,modulated
R16347 T24003 T24002 themeOf Binding,enhanced

DLUT931

Id Subject Object Predicate Lexical cue
T24015 29-36 Positive_regulation denotes induced
T24014 37-44 Binding denotes binding
T24013 193-199 Protein denotes TSST-1
T24012 162-168 Protein denotes TSST-1
T24011 132-138 Protein denotes TSST-1
T24010 72-78 Protein denotes IL-1RA
T24009 22-28 Protein denotes TSST-1
R16348 T24009 T24014 themeOf TSST-1,binding
R16349 T24009 T24015 causeOf TSST-1,induced
R16350 T24010 T24014 themeOf IL-1RA,binding
R16351 T24014 T24015 themeOf binding,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T24129 154-185 Protein denotes to LPS, TSST-1, GP, GP/LPS calc
T24128 162-172 Protein denotes TSST-1, GP
T24127 154-185 Entity denotes to LPS, TSST-1, GP, GP/LPS calc
T24126 127-129 Protein denotes GP
T24125 193-199 Protein denotes TSST-1
T24124 119-122 Entity denotes LPS
T24123 22-28 Protein denotes TSST-1
T24122 0-2 Protein denotes GP
T24121 72-78 Protein denotes IL-1RA
T24120 13-17 Entity denotes LPS-
T24119 45-87 Entity denotes to a new NFκB3 site in the IL-1RA promoter
T24118 162-169 Protein denotes TSST-1,
T24117 157-173 Entity denotes LPS, TSST-1, GP,
T24116 68-87 Entity denotes the IL-1RA promoter
T24115 132-138 Protein denotes TSST-1
T24114 114-116 Protein denotes GP
R16444 T24116 T24121 partOf the IL-1RA promoter,IL-1RA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24108 354-355 . denotes .
T24107 353-354 -RRB- denotes )
T24106 346-353 NNS denotes methods
T24105 342-345 VB denotes see
T24104 341-342 -LRB- denotes (
T24103 336-340 NNP denotes EMSA
T24102 333-335 IN denotes by
T24101 324-332 VBN denotes assessed
T24100 320-323 VBD denotes was
T24099 312-319 JJ denotes binding
T24098 308-311 NNP denotes DNA
T24097 306-307 . denotes .
T24096 305-306 -RRB- denotes )
T24095 304-305 CD denotes 6
T24094 302-303 SYM denotes =
T24093 300-301 FW denotes n
T24092 299-300 -LRB- denotes (
T24091 295-298 NNP denotes SEM
T24090 293-294 CD denotes ±
T24089 291-292 CD denotes 1
T24088 288-290 TO denotes to
T24087 282-287 JJ denotes equal
T24086 278-281 VBN denotes set
T24085 273-277 VBD denotes were
T24084 266-272 NNS denotes levels
T24083 258-265 NN denotes control
T24082 251-257 NN denotes Medium
T24081 249-250 . denotes .
T24080 248-249 -RRB- denotes )
T24079 244-248 CD denotes 0.01
T24078 242-243 FW denotes <
T24077 240-241 FW denotes p
T24076 238-239 SYM denotes =
T24075 235-237 SYM denotes **
T24074 233-234 : denotes ;
T24073 229-233 CD denotes 0.05
T24072 227-228 FW denotes <
T24071 225-226 FW denotes p
T24070 223-224 SYM denotes =
T24069 221-222 SYM denotes *
T24068 220-221 -LRB- denotes (
T24067 207-219 RB denotes respectively
T24066 205-206 , denotes ,
T24065 200-205 NN denotes calc.
T24064 197-199 CD denotes -1
T24063 190-197 NNP denotes GP/TSST
T24062 187-189 CC denotes or
T24061 185-186 . denotes .
T24060 181-185 NN denotes calc
T24059 174-180 NNP denotes GP/LPS
T24058 172-173 , denotes ,
T24057 170-172 NNP denotes GP
T24056 168-169 , denotes ,
T24055 162-168 NNP denotes TSST-1
T24054 160-161 , denotes ,
T24053 157-160 NNP denotes LPS
T24052 154-156 TO denotes to
T24051 145-153 VBN denotes compared
T24050 140-144 WRB denotes when
T24049 138-139 , denotes ,
T24048 132-138 NNP denotes TSST-1
T24047 130-131 NNP denotes +
T24046 127-129 NNP denotes GP
T24045 123-126 CC denotes and
T24044 119-122 NNP denotes LPS
T24043 117-118 NNP denotes +
T24042 114-116 NNP denotes GP
T24041 110-113 IN denotes for
T24040 101-109 VBN denotes enhanced
T24039 97-100 VBD denotes was
T24038 89-96 VBG denotes Binding
T24037 87-88 . denotes .
T24036 79-87 NN denotes promoter
T24035 72-78 NN denotes IL-1RA
T24034 68-71 DT denotes the
T24033 65-67 IN denotes in
T24032 60-64 NN denotes site
T24031 54-59 JJ denotes NFκB3
T24030 50-53 JJ denotes new
T24029 48-49 DT denotes a
T24028 45-47 TO denotes to
T24027 37-44 JJ denotes binding
T24026 22-36 JJ denotes TSST-1-induced
T24025 18-21 CC denotes and
T24024 16-17 : denotes -
T24023 13-16 NNP denotes LPS
T24022 3-12 VBD denotes modulated
T24021 0-2 NNP denotes GP
R16352 T24021 T24022 nsubj GP,modulated
R16353 T24022 T24022 ROOT modulated,modulated
R16354 T24023 T24022 dobj LPS,modulated
R16355 T24024 T24023 punct -,LPS
R16356 T24025 T24023 cc and,LPS
R16357 T24026 T24027 amod TSST-1-induced,binding
R16358 T24027 T24022 oprd binding,modulated
R16359 T24028 T24022 prep to,modulated
R16360 T24029 T24032 det a,site
R16361 T24030 T24032 amod new,site
R16362 T24031 T24032 amod NFκB3,site
R16363 T24032 T24028 pobj site,to
R16364 T24033 T24032 prep in,site
R16365 T24034 T24036 det the,promoter
R16366 T24035 T24036 compound IL-1RA,promoter
R16367 T24036 T24033 pobj promoter,in
R16368 T24037 T24022 punct .,modulated
R16369 T24038 T24040 nsubjpass Binding,enhanced
R16370 T24039 T24040 auxpass was,enhanced
R16371 T24040 T24040 ROOT enhanced,enhanced
R16372 T24041 T24040 prep for,enhanced
R16373 T24042 T24044 compound GP,LPS
R16374 T24043 T24044 compound +,LPS
R16375 T24044 T24041 pobj LPS,for
R16376 T24045 T24044 cc and,LPS
R16377 T24046 T24048 compound GP,TSST-1
R16378 T24047 T24048 compound +,TSST-1
R16379 T24048 T24044 conj TSST-1,LPS
R16380 T24049 T24040 punct ",",enhanced
R16381 T24050 T24051 advmod when,compared
R16382 T24051 T24040 advcl compared,enhanced
R16383 T24052 T24051 prep to,compared
R16384 T24053 T24052 pobj LPS,to
R16385 T24054 T24053 punct ",",LPS
R16386 T24055 T24053 conj TSST-1,LPS
R16387 T24056 T24055 punct ",",TSST-1
R16388 T24057 T24055 conj GP,TSST-1
R16389 T24058 T24057 punct ",",GP
R16390 T24059 T24060 compound GP/LPS,calc
R16391 T24060 T24057 appos calc,GP
R16392 T24061 T24060 punct .,calc
R16393 T24062 T24057 cc or,GP
R16394 T24063 T24057 conj GP/TSST,GP
R16395 T24064 T24065 nummod -1,calc.
R16396 T24065 T24067 npadvmod calc.,respectively
R16397 T24066 T24065 punct ",",calc.
R16398 T24067 T24040 advmod respectively,enhanced
R16399 T24068 T24077 punct (,p
R16400 T24069 T24077 punct *,p
R16401 T24070 T24077 punct =,p
R16402 T24071 T24077 ccomp p,p
R16403 T24072 T24073 nmod <,0.05
R16404 T24073 T24071 npadvmod 0.05,p
R16405 T24074 T24077 punct ;,p
R16406 T24075 T24077 punct **,p
R16407 T24076 T24077 punct =,p
R16408 T24077 T24040 parataxis p,enhanced
R16409 T24078 T24079 nmod <,0.01
R16410 T24079 T24077 npadvmod 0.01,p
R16411 T24080 T24077 punct ),p
R16412 T24081 T24040 punct .,enhanced
R16413 T24082 T24084 compound Medium,levels
R16414 T24083 T24084 compound control,levels
R16415 T24084 T24086 nsubjpass levels,set
R16416 T24085 T24086 auxpass were,set
R16417 T24086 T24086 ROOT set,set
R16418 T24087 T24086 oprd equal,set
R16419 T24088 T24086 prep to,set
R16420 T24089 T24091 nummod 1,SEM
R16421 T24090 T24091 nummod ±,SEM
R16422 T24091 T24088 pobj SEM,to
R16423 T24092 T24095 punct (,6
R16424 T24093 T24095 advmod n,6
R16425 T24094 T24095 punct =,6
R16426 T24095 T24091 appos 6,SEM
R16427 T24096 T24095 punct ),6
R16428 T24097 T24086 punct .,set
R16429 T24098 T24099 compound DNA,binding
R16430 T24099 T24101 nsubjpass binding,assessed
R16431 T24100 T24101 auxpass was,assessed
R16432 T24101 T24101 ROOT assessed,assessed
R16433 T24102 T24101 agent by,assessed
R16434 T24103 T24102 pobj EMSA,by
R16435 T24104 T24105 punct (,see
R16436 T24105 T24101 parataxis see,assessed
R16437 T24106 T24105 dobj methods,see
R16438 T24107 T24105 punct ),see
R16439 T24108 T24101 punct .,assessed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23902 37-44 Binding denotes binding
T23901 37-44 Binding denotes binding
T23900 37-44 Binding denotes binding
T23899 72-87 Protein denotes IL-1RA promoter
T23898 54-64 Protein denotes NFκB3 site
R16256 T23898 T23900 themeOf NFκB3 site,binding
R16257 T23898 T23902 themeOf NFκB3 site,binding
R16258 T23899 T23901 themeOf IL-1RA promoter,binding
R16259 T23899 T23902 themeOf IL-1RA promoter,binding

testone

Id Subject Object Predicate Lexical cue
T23861 89-96 Binding denotes Binding
T23860 60-64 Entity denotes site
T23859 37-44 Binding denotes binding
T23858 29-36 Positive_regulation denotes induced
T23857 3-12 Regulation denotes modulated
T23856 193-199 Protein denotes TSST-1
T23855 162-168 Protein denotes TSST-1
T23854 132-138 Protein denotes TSST-1
T23853 72-78 Protein denotes IL-1RA
T23852 22-28 Protein denotes TSST-1
R16242 T23852 T23858 causeOf TSST-1,induced
R16243 T23854 T23861 themeOf TSST-1,Binding
R16244 T23855 T23861 themeOf TSST-1,Binding
R16245 T23858 T23857 themeOf induced,modulated
R16246 T23859 T23858 themeOf binding,induced

test3

Id Subject Object Predicate Lexical cue
T23875 312-319 Binding denotes binding
T23874 193-199 Protein denotes TSST-1
T23873 162-168 Protein denotes TSST-1
T23872 132-138 Protein denotes TSST-1
T23871 89-96 Binding denotes Binding
T23870 72-78 Protein denotes IL-1RA
T23869 37-44 Binding denotes binding
T23868 29-36 Positive_regulation denotes induced
T23867 22-28 Protein denotes TSST-1
T23866 193-199 Protein denotes TSST-1
T23865 162-168 Protein denotes TSST-1
T23864 132-138 Protein denotes TSST-1
T23863 72-78 Protein denotes IL-1RA
T23862 22-28 Protein denotes TSST-1
R16247 T23867 T23869 themeOf TSST-1,binding
R16248 T23869 T23868 themeOf binding,induced
R16249 T23872 T23871 themeOf TSST-1,Binding
R16250 T23873 T23871 themeOf TSST-1,Binding