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PMC:1472690 / 18507-18872 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T23988 363-364 -RRB- denotes )
T23987 356-363 NN denotes methods
T23986 352-355 VB denotes see
T23985 351-352 -LRB- denotes (
T23984 346-350 NN denotes EMSA
T23983 343-345 IN denotes by
T23982 334-342 VB denotes assessed
T23981 330-333 VB denotes was
T23980 322-329 NN denotes binding
T23979 318-321 NN denotes DNA
T23978 315-316 -RRB- denotes )
T23977 314-315 CD denotes 6
T23976 312-313 JJ denotes =
T23975 310-311 NN denotes n
T23974 309-310 -LRB- denotes (
T23973 305-308 NN denotes SEM
T23972 303-304 CC denotes ±
T23971 301-302 CD denotes 1
T23970 298-300 TO denotes to
T23969 292-297 JJ denotes equal
T23968 288-291 VB denotes set
T23967 283-287 VB denotes were
T23966 276-282 NN denotes levels
T23965 268-275 NN denotes control
T23964 261-267 NN denotes Medium
T23963 258-259 -RRB- denotes )
T23962 254-258 CD denotes 0.01
T23961 252-253 SYM denotes <
T23960 250-251 NN denotes p
T23959 248-249 SYM denotes =
T23958 245-247 SYM denotes **
T23957 243-244 -COLON- denotes ;
T23956 239-243 CD denotes 0.05
T23955 237-238 SYM denotes <
T23954 235-236 NN denotes p
T23953 233-234 SYM denotes =
T23952 231-232 SYM denotes *
T23951 230-231 -LRB- denotes (
T23950 217-229 RB denotes respectively
T23949 215-216 -COMMA- denotes ,
T23948 210-215 NN denotes calc.
T23947 200-209 NN denotes GP/TSST-1
T23946 197-199 CC denotes or
T23945 191-196 NN denotes calc.
T23944 184-190 NN denotes GP/LPS
T23943 182-183 -COMMA- denotes ,
T23942 180-182 NN denotes GP
T23941 178-179 -COMMA- denotes ,
T23940 172-178 NN denotes TSST-1
T23939 170-171 -COMMA- denotes ,
T23938 167-170 NN denotes LPS
T23937 164-166 TO denotes to
T23936 155-163 VB denotes compared
T23935 150-154 WRB denotes when
T23934 148-149 -COMMA- denotes ,
T23933 142-148 NN denotes TSST-1
T23932 140-141 SYM denotes +
T23931 137-139 NN denotes GP
T23930 133-136 CC denotes and
T23929 129-132 NN denotes LPS
T23928 127-128 SYM denotes +
T23927 124-126 NN denotes GP
T23926 120-123 IN denotes for
T23925 111-119 VB denotes enhanced
T23924 107-110 VB denotes was
T23923 99-106 NN denotes Binding
T23922 89-97 NN denotes promoter
T23921 82-88 NN denotes IL-1RA
T23920 78-81 DT denotes the
T23919 75-77 IN denotes in
T23918 70-74 NN denotes site
T23917 64-69 NN denotes NFκB3
T23916 60-63 JJ denotes new
T23915 58-59 DT denotes a
T23914 55-57 TO denotes to
T23913 47-54 NN denotes binding
T23912 32-46 JJ denotes TSST-1-induced
T23911 28-31 CC denotes and
T23910 23-27 NN denotes LPS-
T23909 13-22 VB denotes modulated
T23908 10-12 NN denotes GP
R16260 T23908 T23909 arg1Of GP,modulated
R16261 T23910 T23911 arg1Of LPS-,and
R16262 T23911 T23909 arg2Of and,modulated
R16263 T23913 T23911 arg2Of binding,and
R16264 T23913 T23912 arg1Of binding,TSST-1-induced
R16265 T23913 T23914 arg1Of binding,to
R16266 T23918 T23914 arg2Of site,to
R16267 T23918 T23915 arg1Of site,a
R16268 T23918 T23916 arg1Of site,new
R16269 T23918 T23917 arg1Of site,NFκB3
R16270 T23918 T23919 arg1Of site,in
R16271 T23922 T23919 arg2Of promoter,in
R16272 T23922 T23920 arg1Of promoter,the
R16273 T23922 T23921 arg1Of promoter,IL-1RA
R16274 T23923 T23924 arg1Of Binding,was
R16275 T23923 T23925 arg2Of Binding,enhanced
R16276 T23925 T23924 arg2Of enhanced,was
R16277 T23925 T23926 arg1Of enhanced,for
R16278 T23925 T23934 arg1Of enhanced,","
R16279 T23925 T23935 arg1Of enhanced,when
R16280 T23929 T23927 arg1Of LPS,GP
R16281 T23929 T23928 arg1Of LPS,+
R16282 T23929 T23930 arg1Of LPS,and
R16283 T23930 T23926 arg2Of and,for
R16284 T23933 T23930 arg2Of TSST-1,and
R16285 T23933 T23931 arg1Of TSST-1,GP
R16286 T23933 T23932 arg1Of TSST-1,+
R16287 T23936 T23935 arg2Of compared,when
R16288 T23936 T23937 arg1Of compared,to
R16289 T23938 T23939 arg1Of LPS,","
R16290 T23939 T23941 arg1Of ",",","
R16291 T23940 T23939 arg2Of TSST-1,","
R16292 T23941 T23943 arg1Of ",",","
R16293 T23942 T23941 arg2Of GP,","
R16294 T23943 T23937 arg2Of ",",to
R16295 T23943 T23949 arg1Of ",",","
R16296 T23943 T23950 arg1Of ",",respectively
R16297 T23945 T23944 arg1Of calc.,GP/LPS
R16298 T23945 T23946 arg1Of calc.,or
R16299 T23946 T23943 arg2Of or,","
R16300 T23948 T23946 arg2Of calc.,or
R16301 T23948 T23947 arg1Of calc.,GP/TSST-1
R16302 T23950 T23951 arg1Of respectively,(
R16303 T23956 T23951 arg2Of 0.05,(
R16304 T23956 T23952 arg1Of 0.05,*
R16305 T23956 T23953 arg1Of 0.05,=
R16306 T23956 T23954 arg1Of 0.05,p
R16307 T23956 T23955 arg1Of 0.05,<
R16308 T23956 T23957 arg1Of 0.05,;
R16309 T23956 T23962 arg1Of 0.05,0.01
R16310 T23960 T23957 arg2Of p,;
R16311 T23960 T23958 arg1Of p,**
R16312 T23960 T23959 arg1Of p,=
R16313 T23960 T23961 arg1Of p,<
R16314 T23963 T23951 arg3Of ),(
R16315 T23966 T23964 arg1Of levels,Medium
R16316 T23966 T23965 arg1Of levels,control
R16317 T23966 T23967 arg1Of levels,were
R16318 T23966 T23968 arg2Of levels,set
R16319 T23966 T23969 arg1Of levels,equal
R16320 T23968 T23967 arg2Of set,were
R16321 T23969 T23968 arg3Of equal,set
R16322 T23969 T23970 arg1Of equal,to
R16323 T23971 T23972 arg1Of 1,±
R16324 T23972 T23970 arg2Of ±,to
R16325 T23972 T23974 arg1Of ±,(
R16326 T23973 T23972 arg2Of SEM,±
R16327 T23975 T23976 arg1Of n,=
R16328 T23976 T23974 arg2Of =,(
R16329 T23977 T23976 arg2Of 6,=
R16330 T23978 T23974 arg3Of ),(
R16331 T23980 T23979 arg1Of binding,DNA
R16332 T23980 T23981 arg1Of binding,was
R16333 T23980 T23982 arg2Of binding,assessed
R16334 T23982 T23981 arg2Of assessed,was
R16335 T23982 T23985 arg1Of assessed,(
R16336 T23984 T23982 arg1Of EMSA,assessed
R16337 T23984 T23983 arg2Of EMSA,by
R16338 T23986 T23985 arg2Of see,(
R16339 T23987 T23986 arg2Of methods,see
R16340 T23988 T23985 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23893 203-209 Protein denotes TSST-1
T23892 172-178 Protein denotes TSST-1
T23891 142-148 Protein denotes TSST-1
T23890 82-88 Protein denotes IL-1RA
T23889 32-38 Protein denotes TSST-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T23993 82-88 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA
T23992 203-209 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T23991 172-178 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T23990 142-148 http://www.uniprot.org/uniprot/P06886 denotes TSST-1
T23989 32-38 http://www.uniprot.org/uniprot/P06886 denotes TSST-1

GO-MF

Id Subject Object Predicate Lexical cue
T23897 318-329 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T23896 99-119 http://purl.obolibrary.org/obo/GO_0035326 denotes Binding was enhanced
T23895 322-329 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23894 47-54 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T23879 318-365 Sentence denotes DNA binding was assessed by EMSA (see methods).
T23878 261-317 Sentence denotes Medium control levels were set equal to 1 ± SEM (n = 6).
T23877 99-260 Sentence denotes Binding was enhanced for GP + LPS and GP + TSST-1, when compared to LPS, TSST-1, GP, GP/LPS calc. or GP/TSST-1 calc., respectively (* = p < 0.05; ** = p < 0.01).
T23876 10-98 Sentence denotes GP modulated LPS- and TSST-1-induced binding to a new NFκB3 site in the IL-1RA promoter.
T137 0-98 Sentence denotes Figure 4 GP modulated LPS- and TSST-1-induced binding to a new NFκB3 site in the IL-1RA promoter.
T138 99-260 Sentence denotes Binding was enhanced for GP + LPS and GP + TSST-1, when compared to LPS, TSST-1, GP, GP/LPS calc. or GP/TSST-1 calc., respectively (* = p < 0.05; ** = p < 0.01).
T139 261-317 Sentence denotes Medium control levels were set equal to 1 ± SEM (n = 6).
T140 318-365 Sentence denotes DNA binding was assessed by EMSA (see methods).

simple1

Id Subject Object Predicate Lexical cue
T23907 203-209 Protein denotes TSST-1
T23906 172-178 Protein denotes TSST-1
T23905 142-148 Protein denotes TSST-1
T23904 82-88 Protein denotes IL-1RA
T23903 32-38 Protein denotes TSST-1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T24135 111-119 Positive_regulation denotes enhanced
T24134 203-209 Protein denotes TSST-1
T24133 172-178 Protein denotes TSST-1
T24132 142-148 Protein denotes TSST-1
T24131 82-88 Protein denotes IL-1RA
T24130 32-38 Protein denotes TSST-1
R16445 T24133 T24135 themeOf TSST-1,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24003 99-106 Binding denotes Binding
T24002 111-119 Positive_regulation denotes enhanced
T24001 39-46 Positive_regulation denotes induced
T24000 13-22 Positive_regulation denotes modulated
T23999 47-54 Binding denotes binding
T23998 203-209 Protein denotes TSST-1
T23997 172-178 Protein denotes TSST-1
T23996 142-148 Protein denotes TSST-1
T23995 82-88 Protein denotes IL-1RA
T23994 32-38 Protein denotes TSST-1
R16341 T23994 T24001 causeOf TSST-1,induced
R16342 T23995 T23999 themeOf IL-1RA,binding
R16343 T23997 T24003 themeOf TSST-1,Binding
R16344 T23999 T24000 themeOf binding,modulated
R16345 T23999 T24001 themeOf binding,induced
R16346 T24001 T24000 themeOf induced,modulated
R16347 T24003 T24002 themeOf Binding,enhanced

DLUT931

Id Subject Object Predicate Lexical cue
T24015 39-46 Positive_regulation denotes induced
T24014 47-54 Binding denotes binding
T24013 203-209 Protein denotes TSST-1
T24012 172-178 Protein denotes TSST-1
T24011 142-148 Protein denotes TSST-1
T24010 82-88 Protein denotes IL-1RA
T24009 32-38 Protein denotes TSST-1
R16348 T24009 T24014 themeOf TSST-1,binding
R16349 T24009 T24015 causeOf TSST-1,induced
R16350 T24010 T24014 themeOf IL-1RA,binding
R16351 T24014 T24015 themeOf binding,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T24129 164-195 Protein denotes to LPS, TSST-1, GP, GP/LPS calc
T24128 172-182 Protein denotes TSST-1, GP
T24127 164-195 Entity denotes to LPS, TSST-1, GP, GP/LPS calc
T24126 137-139 Protein denotes GP
T24125 203-209 Protein denotes TSST-1
T24124 129-132 Entity denotes LPS
T24123 32-38 Protein denotes TSST-1
T24122 10-12 Protein denotes GP
T24121 82-88 Protein denotes IL-1RA
T24120 23-27 Entity denotes LPS-
T24119 55-97 Entity denotes to a new NFκB3 site in the IL-1RA promoter
T24118 172-179 Protein denotes TSST-1,
T24117 167-183 Entity denotes LPS, TSST-1, GP,
T24116 78-97 Entity denotes the IL-1RA promoter
T24115 142-148 Protein denotes TSST-1
T24114 124-126 Protein denotes GP
R16444 T24116 T24121 partOf the IL-1RA promoter,IL-1RA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24108 364-365 . denotes .
T24107 363-364 -RRB- denotes )
T24106 356-363 NNS denotes methods
T24105 352-355 VB denotes see
T24104 351-352 -LRB- denotes (
T24103 346-350 NNP denotes EMSA
T24102 343-345 IN denotes by
T24101 334-342 VBN denotes assessed
T24100 330-333 VBD denotes was
T24099 322-329 JJ denotes binding
T24098 318-321 NNP denotes DNA
T24097 316-317 . denotes .
T24096 315-316 -RRB- denotes )
T24095 314-315 CD denotes 6
T24094 312-313 SYM denotes =
T24093 310-311 FW denotes n
T24092 309-310 -LRB- denotes (
T24091 305-308 NNP denotes SEM
T24090 303-304 CD denotes ±
T24089 301-302 CD denotes 1
T24088 298-300 TO denotes to
T24087 292-297 JJ denotes equal
T24086 288-291 VBN denotes set
T24085 283-287 VBD denotes were
T24084 276-282 NNS denotes levels
T24083 268-275 NN denotes control
T24082 261-267 NN denotes Medium
T24081 259-260 . denotes .
T24080 258-259 -RRB- denotes )
T24079 254-258 CD denotes 0.01
T24078 252-253 FW denotes <
T24077 250-251 FW denotes p
T24076 248-249 SYM denotes =
T24075 245-247 SYM denotes **
T24074 243-244 : denotes ;
T24073 239-243 CD denotes 0.05
T24072 237-238 FW denotes <
T24071 235-236 FW denotes p
T24070 233-234 SYM denotes =
T24069 231-232 SYM denotes *
T24068 230-231 -LRB- denotes (
T24067 217-229 RB denotes respectively
T24066 215-216 , denotes ,
T24065 210-215 NN denotes calc.
T24064 207-209 CD denotes -1
T24063 200-207 NNP denotes GP/TSST
T24062 197-199 CC denotes or
T24061 195-196 . denotes .
T24060 191-195 NN denotes calc
T24059 184-190 NNP denotes GP/LPS
T24058 182-183 , denotes ,
T24057 180-182 NNP denotes GP
T24056 178-179 , denotes ,
T24055 172-178 NNP denotes TSST-1
T24054 170-171 , denotes ,
T24053 167-170 NNP denotes LPS
T24052 164-166 TO denotes to
T24051 155-163 VBN denotes compared
T24050 150-154 WRB denotes when
T24049 148-149 , denotes ,
T24048 142-148 NNP denotes TSST-1
T24047 140-141 NNP denotes +
T24046 137-139 NNP denotes GP
T24045 133-136 CC denotes and
T24044 129-132 NNP denotes LPS
T24043 127-128 NNP denotes +
T24042 124-126 NNP denotes GP
T24041 120-123 IN denotes for
T24040 111-119 VBN denotes enhanced
T24039 107-110 VBD denotes was
T24038 99-106 VBG denotes Binding
T24037 97-98 . denotes .
T24036 89-97 NN denotes promoter
T24035 82-88 NN denotes IL-1RA
T24034 78-81 DT denotes the
T24033 75-77 IN denotes in
T24032 70-74 NN denotes site
T24031 64-69 JJ denotes NFκB3
T24030 60-63 JJ denotes new
T24029 58-59 DT denotes a
T24028 55-57 TO denotes to
T24027 47-54 JJ denotes binding
T24026 32-46 JJ denotes TSST-1-induced
T24025 28-31 CC denotes and
T24024 26-27 : denotes -
T24023 23-26 NNP denotes LPS
T24022 13-22 VBD denotes modulated
T24021 10-12 NNP denotes GP
R16352 T24021 T24022 nsubj GP,modulated
R16353 T24022 T24022 ROOT modulated,modulated
R16354 T24023 T24022 dobj LPS,modulated
R16355 T24024 T24023 punct -,LPS
R16356 T24025 T24023 cc and,LPS
R16357 T24026 T24027 amod TSST-1-induced,binding
R16358 T24027 T24022 oprd binding,modulated
R16359 T24028 T24022 prep to,modulated
R16360 T24029 T24032 det a,site
R16361 T24030 T24032 amod new,site
R16362 T24031 T24032 amod NFκB3,site
R16363 T24032 T24028 pobj site,to
R16364 T24033 T24032 prep in,site
R16365 T24034 T24036 det the,promoter
R16366 T24035 T24036 compound IL-1RA,promoter
R16367 T24036 T24033 pobj promoter,in
R16368 T24037 T24022 punct .,modulated
R16369 T24038 T24040 nsubjpass Binding,enhanced
R16370 T24039 T24040 auxpass was,enhanced
R16371 T24040 T24040 ROOT enhanced,enhanced
R16372 T24041 T24040 prep for,enhanced
R16373 T24042 T24044 compound GP,LPS
R16374 T24043 T24044 compound +,LPS
R16375 T24044 T24041 pobj LPS,for
R16376 T24045 T24044 cc and,LPS
R16377 T24046 T24048 compound GP,TSST-1
R16378 T24047 T24048 compound +,TSST-1
R16379 T24048 T24044 conj TSST-1,LPS
R16380 T24049 T24040 punct ",",enhanced
R16381 T24050 T24051 advmod when,compared
R16382 T24051 T24040 advcl compared,enhanced
R16383 T24052 T24051 prep to,compared
R16384 T24053 T24052 pobj LPS,to
R16385 T24054 T24053 punct ",",LPS
R16386 T24055 T24053 conj TSST-1,LPS
R16387 T24056 T24055 punct ",",TSST-1
R16388 T24057 T24055 conj GP,TSST-1
R16389 T24058 T24057 punct ",",GP
R16390 T24059 T24060 compound GP/LPS,calc
R16391 T24060 T24057 appos calc,GP
R16392 T24061 T24060 punct .,calc
R16393 T24062 T24057 cc or,GP
R16394 T24063 T24057 conj GP/TSST,GP
R16395 T24064 T24065 nummod -1,calc.
R16396 T24065 T24067 npadvmod calc.,respectively
R16397 T24066 T24065 punct ",",calc.
R16398 T24067 T24040 advmod respectively,enhanced
R16399 T24068 T24077 punct (,p
R16400 T24069 T24077 punct *,p
R16401 T24070 T24077 punct =,p
R16402 T24071 T24077 ccomp p,p
R16403 T24072 T24073 nmod <,0.05
R16404 T24073 T24071 npadvmod 0.05,p
R16405 T24074 T24077 punct ;,p
R16406 T24075 T24077 punct **,p
R16407 T24076 T24077 punct =,p
R16408 T24077 T24040 parataxis p,enhanced
R16409 T24078 T24079 nmod <,0.01
R16410 T24079 T24077 npadvmod 0.01,p
R16411 T24080 T24077 punct ),p
R16412 T24081 T24040 punct .,enhanced
R16413 T24082 T24084 compound Medium,levels
R16414 T24083 T24084 compound control,levels
R16415 T24084 T24086 nsubjpass levels,set
R16416 T24085 T24086 auxpass were,set
R16417 T24086 T24086 ROOT set,set
R16418 T24087 T24086 oprd equal,set
R16419 T24088 T24086 prep to,set
R16420 T24089 T24091 nummod 1,SEM
R16421 T24090 T24091 nummod ±,SEM
R16422 T24091 T24088 pobj SEM,to
R16423 T24092 T24095 punct (,6
R16424 T24093 T24095 advmod n,6
R16425 T24094 T24095 punct =,6
R16426 T24095 T24091 appos 6,SEM
R16427 T24096 T24095 punct ),6
R16428 T24097 T24086 punct .,set
R16429 T24098 T24099 compound DNA,binding
R16430 T24099 T24101 nsubjpass binding,assessed
R16431 T24100 T24101 auxpass was,assessed
R16432 T24101 T24101 ROOT assessed,assessed
R16433 T24102 T24101 agent by,assessed
R16434 T24103 T24102 pobj EMSA,by
R16435 T24104 T24105 punct (,see
R16436 T24105 T24101 parataxis see,assessed
R16437 T24106 T24105 dobj methods,see
R16438 T24107 T24105 punct ),see
R16439 T24108 T24101 punct .,assessed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23902 47-54 Binding denotes binding
T23901 47-54 Binding denotes binding
T23900 47-54 Binding denotes binding
T23899 82-97 Protein denotes IL-1RA promoter
T23898 64-74 Protein denotes NFκB3 site
R16256 T23898 T23900 themeOf NFκB3 site,binding
R16257 T23898 T23902 themeOf NFκB3 site,binding
R16258 T23899 T23901 themeOf IL-1RA promoter,binding
R16259 T23899 T23902 themeOf IL-1RA promoter,binding

testone

Id Subject Object Predicate Lexical cue
T23861 99-106 Binding denotes Binding
T23860 70-74 Entity denotes site
T23859 47-54 Binding denotes binding
T23858 39-46 Positive_regulation denotes induced
T23857 13-22 Regulation denotes modulated
T23856 203-209 Protein denotes TSST-1
T23855 172-178 Protein denotes TSST-1
T23854 142-148 Protein denotes TSST-1
T23853 82-88 Protein denotes IL-1RA
T23852 32-38 Protein denotes TSST-1
R16242 T23852 T23858 causeOf TSST-1,induced
R16243 T23854 T23861 themeOf TSST-1,Binding
R16244 T23855 T23861 themeOf TSST-1,Binding
R16245 T23858 T23857 themeOf induced,modulated
R16246 T23859 T23858 themeOf binding,induced

test3

Id Subject Object Predicate Lexical cue
T23875 322-329 Binding denotes binding
T23874 203-209 Protein denotes TSST-1
T23873 172-178 Protein denotes TSST-1
T23872 142-148 Protein denotes TSST-1
T23871 99-106 Binding denotes Binding
T23870 82-88 Protein denotes IL-1RA
T23869 47-54 Binding denotes binding
T23868 39-46 Positive_regulation denotes induced
T23867 32-38 Protein denotes TSST-1
T23866 203-209 Protein denotes TSST-1
T23865 172-178 Protein denotes TSST-1
T23864 142-148 Protein denotes TSST-1
T23863 82-88 Protein denotes IL-1RA
T23862 32-38 Protein denotes TSST-1
R16247 T23867 T23869 themeOf TSST-1,binding
R16248 T23869 T23868 themeOf binding,induced
R16249 T23872 T23871 themeOf TSST-1,Binding
R16250 T23873 T23871 themeOf TSST-1,Binding