PMC:1472690 / 16520-16710 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1472690","sourcedb":"PMC","sourceid":"1472690","source_url":"http://www.ncbi.nlm.nih.gov/pmc/1472690","text":"We investigated previoulsy described and newly discovered transcription factor binding sites of the IL-1RA promoter (Table 1) using the program OMIGA (v.1.1.3, Oxford Molecular, Oxford, UK).","tracks":[{"project":"pmc-enju-pas","denotations":[{"id":"T8268","span":{"begin":188,"end":189},"obj":"-RRB-"},{"id":"T8267","span":{"begin":186,"end":188},"obj":"NNP"},{"id":"T8266","span":{"begin":184,"end":185},"obj":"-COMMA-"},{"id":"T8265","span":{"begin":178,"end":184},"obj":"NNP"},{"id":"T8264","span":{"begin":176,"end":177},"obj":"-COMMA-"},{"id":"T8263","span":{"begin":167,"end":176},"obj":"NNP"},{"id":"T8262","span":{"begin":160,"end":166},"obj":"NNP"},{"id":"T8261","span":{"begin":158,"end":159},"obj":"-COMMA-"},{"id":"T8260","span":{"begin":151,"end":158},"obj":"NN"},{"id":"T8259","span":{"begin":150,"end":151},"obj":"-LRB-"},{"id":"T8258","span":{"begin":144,"end":149},"obj":"NN"},{"id":"T8257","span":{"begin":136,"end":143},"obj":"NN"},{"id":"T8256","span":{"begin":132,"end":135},"obj":"DT"},{"id":"T8255","span":{"begin":126,"end":131},"obj":"VB"},{"id":"T8254","span":{"begin":124,"end":125},"obj":"-RRB-"},{"id":"T8253","span":{"begin":123,"end":124},"obj":"CD"},{"id":"T8252","span":{"begin":117,"end":122},"obj":"NN"},{"id":"T8251","span":{"begin":116,"end":117},"obj":"-LRB-"},{"id":"T8250","span":{"begin":107,"end":115},"obj":"NN"},{"id":"T8249","span":{"begin":100,"end":106},"obj":"NN"},{"id":"T8248","span":{"begin":96,"end":99},"obj":"DT"},{"id":"T8247","span":{"begin":93,"end":95},"obj":"IN"},{"id":"T8246","span":{"begin":87,"end":92},"obj":"NN"},{"id":"T8245","span":{"begin":79,"end":86},"obj":"NN"},{"id":"T8244","span":{"begin":72,"end":78},"obj":"NN"},{"id":"T8243","span":{"begin":58,"end":71},"obj":"NN"},{"id":"T8242","span":{"begin":47,"end":57},"obj":"VB"},{"id":"T8241","span":{"begin":41,"end":46},"obj":"RB"},{"id":"T8240","span":{"begin":37,"end":40},"obj":"CC"},{"id":"T8239","span":{"begin":27,"end":36},"obj":"VB"},{"id":"T8238","span":{"begin":16,"end":26},"obj":"JJ"},{"id":"T8237","span":{"begin":3,"end":15},"obj":"VB"},{"id":"T8236","span":{"begin":0,"end":2},"obj":"PRP"}],"relations":[{"id":"R5219","pred":"arg1Of","subj":"T8236","obj":"T8237"},{"id":"R5220","pred":"arg1Of","subj":"T8239","obj":"T8238"},{"id":"R5221","pred":"arg1Of","subj":"T8239","obj":"T8240"},{"id":"R5222","pred":"arg2Of","subj":"T8242","obj":"T8240"},{"id":"R5223","pred":"arg1Of","subj":"T8242","obj":"T8241"},{"id":"R5224","pred":"arg2Of","subj":"T8246","obj":"T8237"},{"id":"R5225","pred":"arg1Of","subj":"T8246","obj":"T8239"},{"id":"R5226","pred":"arg1Of","subj":"T8246","obj":"T8242"},{"id":"R5227","pred":"arg1Of","subj":"T8246","obj":"T8243"},{"id":"R5228","pred":"arg1Of","subj":"T8246","obj":"T8244"},{"id":"R5229","pred":"arg1Of","subj":"T8246","obj":"T8245"},{"id":"R5230","pred":"arg1Of","subj":"T8246","obj":"T8247"},{"id":"R5231","pred":"arg1Of","subj":"T8246","obj":"T8255"},{"id":"R5232","pred":"arg2Of","subj":"T8250","obj":"T8247"},{"id":"R5233","pred":"arg1Of","subj":"T8250","obj":"T8248"},{"id":"R5234","pred":"arg1Of","subj":"T8250","obj":"T8249"},{"id":"R5235","pred":"arg1Of","subj":"T8250","obj":"T8251"},{"id":"R5236","pred":"arg2Of","subj":"T8252","obj":"T8251"},{"id":"R5237","pred":"arg1Of","subj":"T8252","obj":"T8253"},{"id":"R5238","pred":"arg3Of","subj":"T8254","obj":"T8251"},{"id":"R5239","pred":"arg2Of","subj":"T8258","obj":"T8255"},{"id":"R5240","pred":"arg1Of","subj":"T8258","obj":"T8256"},{"id":"R5241","pred":"arg1Of","subj":"T8258","obj":"T8257"},{"id":"R5242","pred":"arg1Of","subj":"T8258","obj":"T8259"},{"id":"R5243","pred":"arg2Of","subj":"T8260","obj":"T8259"},{"id":"R5244","pred":"arg1Of","subj":"T8260","obj":"T8261"},{"id":"R5245","pred":"arg1Of","subj":"T8260","obj":"T8266"},{"id":"R5246","pred":"arg1Of","subj":"T8260","obj":"T8267"},{"id":"R5247","pred":"arg2Of","subj":"T8263","obj":"T8261"},{"id":"R5248","pred":"arg1Of","subj":"T8263","obj":"T8262"},{"id":"R5249","pred":"arg1Of","subj":"T8263","obj":"T8264"},{"id":"R5250","pred":"arg2Of","subj":"T8265","obj":"T8264"},{"id":"R5251","pred":"arg3Of","subj":"T8268","obj":"T8259"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T8268","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8267","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8266","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8265","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8264","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8263","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8262","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8261","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8260","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8259","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8258","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8257","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8256","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8255","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8254","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8253","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8252","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8251","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8250","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8249","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8248","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8247","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8246","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8245","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8244","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8243","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8242","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8241","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8240","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8239","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8238","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8237","pred":"source","obj":"pmc-enju-pas"},{"subj":"T8236","pred":"source","obj":"pmc-enju-pas"}]},{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T8103","span":{"begin":100,"end":106},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T8103","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"}]},{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T8662","span":{"begin":100,"end":106},"obj":"http://www.uniprot.org/uniprot/P18510"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T8662","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"GO-BP","denotations":[{"id":"T8023","span":{"begin":58,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"attributes":[{"subj":"T8023","pred":"source","obj":"GO-BP"}]},{"project":"GO-MF","denotations":[{"id":"T8116","span":{"begin":79,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T8132","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0070491"},{"id":"T8131","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0043425"},{"id":"T8130","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0008134"},{"id":"T8129","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0033613"}],"attributes":[{"subj":"T8116","pred":"source","obj":"GO-MF"},{"subj":"T8132","pred":"source","obj":"GO-MF"},{"subj":"T8131","pred":"source","obj":"GO-MF"},{"subj":"T8130","pred":"source","obj":"GO-MF"},{"subj":"T8129","pred":"source","obj":"GO-MF"}]},{"project":"sentences","denotations":[{"id":"T8010","span":{"begin":0,"end":190},"obj":"Sentence"},{"id":"T128","span":{"begin":0,"end":190},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T8010","pred":"source","obj":"sentences"},{"subj":"T128","pred":"source","obj":"sentences"}]},{"project":"simple1","denotations":[{"id":"T8162","span":{"begin":100,"end":106},"obj":"Protein"}],"attributes":[{"subj":"T8162","pred":"source","obj":"simple1"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T9342","span":{"begin":100,"end":106},"obj":"Protein"}],"attributes":[{"subj":"T9342","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T8674","span":{"begin":100,"end":106},"obj":"Protein"}],"attributes":[{"subj":"T8674","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"DLUT931","denotations":[{"id":"T8741","span":{"begin":100,"end":106},"obj":"Protein"}],"attributes":[{"subj":"T8741","pred":"source","obj":"DLUT931"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T9417","span":{"begin":100,"end":106},"obj":"Protein"},{"id":"T9387","span":{"begin":178,"end":188},"obj":"Protein"},{"id":"T9371","span":{"begin":96,"end":115},"obj":"Entity"}],"relations":[{"id":"R6247","pred":"partOf","subj":"T9371","obj":"T9417"}],"attributes":[{"subj":"T9417","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T9387","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T9371","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T8896","span":{"begin":189,"end":190},"obj":"."},{"id":"T8895","span":{"begin":188,"end":189},"obj":"-RRB-"},{"id":"T8894","span":{"begin":186,"end":188},"obj":"NNP"},{"id":"T8893","span":{"begin":184,"end":185},"obj":","},{"id":"T8892","span":{"begin":178,"end":184},"obj":"NNP"},{"id":"T8891","span":{"begin":176,"end":177},"obj":","},{"id":"T8890","span":{"begin":167,"end":176},"obj":"NNP"},{"id":"T8889","span":{"begin":160,"end":166},"obj":"NNP"},{"id":"T8888","span":{"begin":158,"end":159},"obj":","},{"id":"T8887","span":{"begin":153,"end":158},"obj":"CD"},{"id":"T8886","span":{"begin":151,"end":153},"obj":"CC"},{"id":"T8885","span":{"begin":150,"end":151},"obj":"-LRB-"},{"id":"T8884","span":{"begin":144,"end":149},"obj":"NNP"},{"id":"T8883","span":{"begin":136,"end":143},"obj":"NN"},{"id":"T8882","span":{"begin":132,"end":135},"obj":"DT"},{"id":"T8881","span":{"begin":126,"end":131},"obj":"VBG"},{"id":"T8880","span":{"begin":124,"end":125},"obj":"-RRB-"},{"id":"T8879","span":{"begin":123,"end":124},"obj":"CD"},{"id":"T8878","span":{"begin":117,"end":122},"obj":"NNP"},{"id":"T8877","span":{"begin":116,"end":117},"obj":"-LRB-"},{"id":"T8876","span":{"begin":107,"end":115},"obj":"NN"},{"id":"T8875","span":{"begin":100,"end":106},"obj":"NN"},{"id":"T8874","span":{"begin":96,"end":99},"obj":"DT"},{"id":"T8873","span":{"begin":93,"end":95},"obj":"IN"},{"id":"T8872","span":{"begin":87,"end":92},"obj":"NNS"},{"id":"T8871","span":{"begin":79,"end":86},"obj":"JJ"},{"id":"T8870","span":{"begin":72,"end":78},"obj":"NN"},{"id":"T8869","span":{"begin":58,"end":71},"obj":"NN"},{"id":"T8868","span":{"begin":47,"end":57},"obj":"VBN"},{"id":"T8867","span":{"begin":41,"end":46},"obj":"RB"},{"id":"T8866","span":{"begin":37,"end":40},"obj":"CC"},{"id":"T8865","span":{"begin":27,"end":36},"obj":"VBN"},{"id":"T8864","span":{"begin":16,"end":26},"obj":"JJ"},{"id":"T8863","span":{"begin":3,"end":15},"obj":"VBD"},{"id":"T8862","span":{"begin":0,"end":2},"obj":"PRP"}],"relations":[{"id":"R5778","pred":"nsubj","subj":"T8862","obj":"T8863"},{"id":"R5779","pred":"ROOT","subj":"T8863","obj":"T8863"},{"id":"R5780","pred":"advmod","subj":"T8864","obj":"T8865"},{"id":"R5781","pred":"conj","subj":"T8865","obj":"T8863"},{"id":"R5782","pred":"cc","subj":"T8866","obj":"T8865"},{"id":"R5783","pred":"advmod","subj":"T8867","obj":"T8868"},{"id":"R5784","pred":"conj","subj":"T8868","obj":"T8865"},{"id":"R5785","pred":"compound","subj":"T8869","obj":"T8870"},{"id":"R5786","pred":"cc","subj":"T8870","obj":"T8886"},{"id":"R5787","pred":"amod","subj":"T8871","obj":"T8872"},{"id":"R5788","pred":"dobj","subj":"T8872","obj":"T8870"},{"id":"R5789","pred":"prep","subj":"T8873","obj":"T8872"},{"id":"R5790","pred":"det","subj":"T8874","obj":"T8876"},{"id":"R5791","pred":"compound","subj":"T8875","obj":"T8876"},{"id":"R5792","pred":"pobj","subj":"T8876","obj":"T8873"},{"id":"R5793","pred":"punct","subj":"T8877","obj":"T8876"},{"id":"R5794","pred":"appos","subj":"T8878","obj":"T8876"},{"id":"R5795","pred":"nummod","subj":"T8879","obj":"T8878"},{"id":"R5796","pred":"punct","subj":"T8880","obj":"T8876"},{"id":"R5797","pred":"acl","subj":"T8881","obj":"T8870"},{"id":"R5798","pred":"det","subj":"T8882","obj":"T8883"},{"id":"R5799","pred":"dobj","subj":"T8883","obj":"T8881"},{"id":"R5800","pred":"appos","subj":"T8884","obj":"T8883"},{"id":"R5801","pred":"punct","subj":"T8885","obj":"T8886"},{"id":"R5802","pred":"cc","subj":"T8886","obj":"T8863"},{"id":"R5803","pred":"pobj","subj":"T8887","obj":"T8886"},{"id":"R5804","pred":"punct","subj":"T8888","obj":"T8887"},{"id":"R5805","pred":"compound","subj":"T8889","obj":"T8890"},{"id":"R5806","pred":"appos","subj":"T8890","obj":"T8887"},{"id":"R5807","pred":"punct","subj":"T8891","obj":"T8890"},{"id":"R5808","pred":"conj","subj":"T8892","obj":"T8890"},{"id":"R5809","pred":"punct","subj":"T8893","obj":"T8892"},{"id":"R5810","pred":"conj","subj":"T8894","obj":"T8892"},{"id":"R5811","pred":"punct","subj":"T8895","obj":"T8892"},{"id":"R5812","pred":"punct","subj":"T8896","obj":"T8863"}],"attributes":[{"subj":"T8896","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8895","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8894","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8893","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8892","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8891","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8890","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8889","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8888","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8887","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8886","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8885","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8884","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8883","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8882","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8881","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8880","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8879","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8878","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8877","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8876","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8875","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8874","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8873","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8872","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8871","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8870","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8869","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8868","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8867","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8866","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8865","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8864","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8863","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T8862","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"testone","denotations":[{"id":"T7929","span":{"begin":87,"end":92},"obj":"Entity"},{"id":"T7913","span":{"begin":100,"end":106},"obj":"Protein"}],"attributes":[{"subj":"T7929","pred":"source","obj":"testone"},{"subj":"T7913","pred":"source","obj":"testone"}]},{"project":"test3","denotations":[{"id":"T7985","span":{"begin":100,"end":106},"obj":"Protein"},{"id":"T7984","span":{"begin":87,"end":92},"obj":"Entity"},{"id":"T7959","span":{"begin":100,"end":106},"obj":"Protein"}],"attributes":[{"subj":"T7985","pred":"source","obj":"test3"},{"subj":"T7984","pred":"source","obj":"test3"},{"subj":"T7959","pred":"source","obj":"test3"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"pmc-enju-pas","color":"#9dec93","default":true},{"id":"bionlp-st-ge-2016-test-proteins","color":"#ec93b7"},{"id":"bionlp-st-ge-2016-uniprot","color":"#93d1ec"},{"id":"GO-BP","color":"#ebec93"},{"id":"GO-MF","color":"#d293ec"},{"id":"sentences","color":"#93ecb8"},{"id":"simple1","color":"#ec9e93"},{"id":"BioNLP16_DUT","color":"#93a1ec"},{"id":"BioNLP16_Messiy","color":"#bbec93"},{"id":"DLUT931","color":"#ec93d5"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#93ece9"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#eccf93"},{"id":"testone","color":"#b593ec"},{"id":"test3","color":"#93ec9b"}]}]}}