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PMC:1472690 / 10898-11137 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5244 229-238 NN denotes mediators
T5243 212-228 JJ denotes pro-inflammatory
T5242 206-211 JJ denotes other
T5241 202-205 CC denotes and
T5240 197-201 NN denotes IFNγ
T5239 195-196 -COMMA- denotes ,
T5238 191-195 NN denotes IL-6
T5237 189-190 -COMMA- denotes ,
T5236 185-189 NN denotes IL-8
T5235 183-184 -COMMA- denotes ,
T5234 179-183 NN denotes TNFα
T5233 176-178 IN denotes of
T5232 165-175 NN denotes production
T5231 162-164 TO denotes to
T5230 157-161 VB denotes lead
T5229 151-156 MD denotes would
T5228 146-150 NN denotes PBMC
T5227 140-145 JJ denotes human
T5226 137-139 IN denotes of
T5225 127-136 NN denotes treatment
T5224 124-126 NN denotes GP
T5223 119-123 IN denotes that
T5222 111-118 VB denotes assumed
T5221 108-110 VB denotes be
T5220 102-107 MD denotes could
T5219 99-101 PRP denotes it
T5218 97-98 -COMMA- denotes ,
T5217 88-97 NN denotes promoters
T5216 83-87 NN denotes IFNγ
T5215 79-82 CC denotes and
T5214 74-78 NN denotes IL-6
T5213 72-73 -COMMA- denotes ,
T5212 68-72 NN denotes IL-8
T5211 66-67 -COMMA- denotes ,
T5210 62-66 NN denotes TNFα
T5209 58-61 DT denotes the
T5208 53-57 IN denotes from
T5207 47-52 NN denotes sites
T5206 41-46 CD denotes seven
T5205 38-40 TO denotes to
T5204 31-37 NN denotes shifts
T5203 26-30 NN denotes band
T5202 15-25 JJ denotes GP-induced
T5201 11-14 DT denotes the
T5200 8-10 IN denotes of
T5199 0-7 IN denotes Because
R2980 T5199 T5200 arg1Of Because,of
R2981 T5204 T5199 arg2Of shifts,Because
R2982 T5204 T5201 arg1Of shifts,the
R2983 T5204 T5202 arg1Of shifts,GP-induced
R2984 T5204 T5203 arg1Of shifts,band
R2985 T5204 T5205 arg1Of shifts,to
R2986 T5207 T5205 arg2Of sites,to
R2987 T5207 T5206 arg1Of sites,seven
R2988 T5207 T5208 arg1Of sites,from
R2989 T5210 T5211 arg1Of TNFα,","
R2990 T5211 T5213 arg1Of ",",","
R2991 T5212 T5211 arg2Of IL-8,","
R2992 T5213 T5215 arg1Of ",",and
R2993 T5214 T5213 arg2Of IL-6,","
R2994 T5216 T5215 arg2Of IFNγ,and
R2995 T5217 T5208 arg2Of promoters,from
R2996 T5217 T5209 arg1Of promoters,the
R2997 T5217 T5210 arg1Of promoters,TNFα
R2998 T5217 T5212 arg1Of promoters,IL-8
R2999 T5217 T5214 arg1Of promoters,IL-6
R3000 T5217 T5216 arg1Of promoters,IFNγ
R3001 T5219 T5220 arg1Of it,could
R3002 T5219 T5221 arg1Of it,be
R3003 T5219 T5222 arg2Of it,assumed
R3004 T5222 T5199 arg1Of assumed,Because
R3005 T5222 T5218 arg1Of assumed,","
R3006 T5222 T5220 arg2Of assumed,could
R3007 T5222 T5221 arg2Of assumed,be
R3008 T5225 T5224 arg1Of treatment,GP
R3009 T5225 T5226 arg1Of treatment,of
R3010 T5225 T5229 arg1Of treatment,would
R3011 T5225 T5230 arg1Of treatment,lead
R3012 T5228 T5226 arg2Of PBMC,of
R3013 T5228 T5227 arg1Of PBMC,human
R3014 T5230 T5222 arg3Of lead,assumed
R3015 T5230 T5223 arg1Of lead,that
R3016 T5230 T5229 arg2Of lead,would
R3017 T5230 T5231 arg1Of lead,to
R3018 T5232 T5231 arg2Of production,to
R3019 T5232 T5233 arg1Of production,of
R3020 T5234 T5235 arg1Of TNFα,","
R3021 T5235 T5237 arg1Of ",",","
R3022 T5236 T5235 arg2Of IL-8,","
R3023 T5237 T5239 arg1Of ",",","
R3024 T5238 T5237 arg2Of IL-6,","
R3025 T5239 T5241 arg1Of ",",and
R3026 T5240 T5239 arg2Of IFNγ,","
R3027 T5241 T5233 arg2Of and,of
R3028 T5244 T5241 arg2Of mediators,and
R3029 T5244 T5242 arg1Of mediators,other
R3030 T5244 T5243 arg1Of mediators,pro-inflammatory

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4930 197-201 Protein denotes IFNγ
T4929 191-195 Protein denotes IL-6
T4928 185-189 Protein denotes IL-8
T4927 179-183 Protein denotes TNFα
T4926 83-87 Protein denotes IFNγ
T4925 74-78 Protein denotes IL-6
T4924 68-72 Protein denotes IL-8
T4923 62-66 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6067 191-195 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T6066 74-78 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T6051 179-183 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T6050 62-66 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T6057 185-189 http://www.uniprot.org/uniprot/P10145 denotes IL-8
T6056 68-72 http://www.uniprot.org/uniprot/P10145 denotes IL-8

GO-MF

Id Subject Object Predicate Lexical cue
T5007 191-195 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T5006 74-78 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T4997 185-189 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8
T4996 68-72 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8

sentences

Id Subject Object Predicate Lexical cue
T4720 0-239 Sentence denotes Because of the GP-induced band shifts to seven sites from the TNFα, IL-8, IL-6 and IFNγ promoters, it could be assumed that GP treatment of human PBMC would lead to production of TNFα, IL-8, IL-6, IFNγ and other pro-inflammatory mediators.
T83 0-239 Sentence denotes Because of the GP-induced band shifts to seven sites from the TNFα, IL-8, IL-6 and IFNγ promoters, it could be assumed that GP treatment of human PBMC would lead to production of TNFα, IL-8, IL-6, IFNγ and other pro-inflammatory mediators.

simple1

Id Subject Object Predicate Lexical cue
T5107 197-201 Protein denotes IFNγ
T5106 191-195 Protein denotes IL-6
T5105 185-189 Protein denotes IL-8
T5104 179-183 Protein denotes TNFα
T5103 83-87 Protein denotes IFNγ
T5102 74-78 Protein denotes IL-6
T5101 68-72 Protein denotes IL-8
T5100 62-66 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7649 68-72 Protein denotes IL-8
T7648 62-66 Protein denotes TNFα
T7647 197-201 Protein denotes IFNγ
T7721 165-175 Gene_expression denotes production
T7720 157-161 Positive_regulation denotes lead
T7654 191-195 Protein denotes IL-6
T7653 185-189 Protein denotes IL-8
T7652 179-183 Protein denotes TNFα
T7651 83-87 Protein denotes IFNγ
T7650 74-78 Protein denotes IL-6
R4985 T7647 T7721 themeOf IFNγ,production
R4987 T7652 T7721 themeOf TNFα,production
R4988 T7653 T7721 themeOf IL-8,production
R4989 T7654 T7721 themeOf IL-6,production
R5014 T7721 T7720 themeOf production,lead
R5015 T7721 T7720 themeOf production,lead
R5016 T7721 T7720 themeOf production,lead
R5017 T7721 T7720 themeOf production,lead

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6104 191-195 Protein denotes IL-6
T6103 185-189 Protein denotes IL-8
T6102 179-183 Protein denotes TNFα
T6101 83-87 Protein denotes IFNγ
T6100 74-78 Protein denotes IL-6
T6099 68-72 Protein denotes IL-8
T6098 62-66 Protein denotes TNFα
T6097 197-201 Protein denotes IFNγ
T6171 165-175 Gene_expression denotes production
T6170 157-161 Positive_regulation denotes lead
R3806 T6097 T6171 themeOf IFNγ,production
R3807 T6102 T6171 themeOf TNFα,production
R3808 T6103 T6171 themeOf IL-8,production
R3809 T6104 T6171 themeOf IL-6,production
R3831 T6171 T6170 themeOf production,lead
R3833 T6171 T6170 themeOf production,lead
R3835 T6171 T6170 themeOf production,lead
R3837 T6171 T6170 themeOf production,lead

DLUT931

Id Subject Object Predicate Lexical cue
T6380 157-161 Positive_regulation denotes lead
T6379 165-175 Gene_expression denotes production
T6313 191-195 Protein denotes IL-6
T6312 185-189 Protein denotes IL-8
T6311 179-183 Protein denotes TNFα
T6310 83-87 Protein denotes IFNγ
T6309 74-78 Protein denotes IL-6
T6308 68-72 Protein denotes IL-8
T6307 62-66 Protein denotes TNFα
T6306 197-201 Protein denotes IFNγ
R3921 T6306 T6379 themeOf IFNγ,production
R3923 T6311 T6379 themeOf TNFα,production
R3925 T6312 T6379 themeOf IL-8,production
R3926 T6313 T6379 themeOf IL-6,production
R3957 T6379 T6380 themeOf production,lead
R3959 T6379 T6380 themeOf production,lead
R3960 T6379 T6380 themeOf production,lead
R3961 T6379 T6380 themeOf production,lead

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7609 185-189 Protein denotes IL-8
T7605 197-201 Protein denotes IFNγ
T7604 58-97 Entity denotes the TNFα, IL-8, IL-6 and IFNγ promoters
T7587 146-150 Entity denotes PBMC
T7568 191-195 Protein denotes IL-6
T7567 41-97 Entity denotes seven sites from the TNFα, IL-8, IL-6 and IFNγ promoters
T7555 62-66 Protein denotes TNFα
T7552 83-87 Protein denotes IFNγ
T7531 68-72 Protein denotes IL-8
T7635 179-183 Protein denotes TNFα
T7778 74-78 Protein denotes IL-6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6594 238-239 . denotes .
T6593 229-238 NNS denotes mediators
T6592 212-228 JJ denotes pro-inflammatory
T6591 206-211 JJ denotes other
T6590 202-205 CC denotes and
T6589 197-201 NNP denotes IFNγ
T6588 195-196 , denotes ,
T6587 191-195 NNP denotes IL-6
T6586 189-190 , denotes ,
T6585 185-189 NNP denotes IL-8
T6584 183-184 , denotes ,
T6583 179-183 NNP denotes TNFα
T6582 176-178 IN denotes of
T6581 165-175 NN denotes production
T6580 162-164 TO denotes to
T6579 157-161 VB denotes lead
T6578 151-156 MD denotes would
T6577 146-150 NNP denotes PBMC
T6576 140-145 JJ denotes human
T6575 137-139 IN denotes of
T6574 127-136 NN denotes treatment
T6573 124-126 NNP denotes GP
T6572 119-123 IN denotes that
T6571 111-118 VBN denotes assumed
T6570 108-110 VB denotes be
T6569 102-107 MD denotes could
T6568 99-101 PRP denotes it
T6567 97-98 , denotes ,
T6566 88-97 NNS denotes promoters
T6565 83-87 NNP denotes IFNγ
T6564 79-82 CC denotes and
T6563 74-78 NNP denotes IL-6
T6562 72-73 , denotes ,
T6561 68-72 NNP denotes IL-8
T6560 66-67 , denotes ,
T6559 62-66 NNP denotes TNFα
T6558 58-61 DT denotes the
T6557 53-57 IN denotes from
T6556 47-52 NNS denotes sites
T6555 41-46 CD denotes seven
T6554 38-40 TO denotes to
T6553 31-37 NNS denotes shifts
T6552 26-30 NN denotes band
T6551 15-25 JJ denotes GP-induced
T6550 11-14 DT denotes the
T6549 8-10 IN denotes of
T6548 0-7 IN denotes Because
R4050 T6548 T6571 prep Because,assumed
R4052 T6549 T6548 pcomp of,Because
R4053 T6550 T6553 det the,shifts
R4054 T6551 T6553 amod GP-induced,shifts
R4056 T6552 T6553 compound band,shifts
R4057 T6553 T6548 pobj shifts,Because
R4058 T6554 T6553 prep to,shifts
R4060 T6555 T6556 nummod seven,sites
R4061 T6556 T6554 pobj sites,to
R4062 T6557 T6556 prep from,sites
R4064 T6558 T6559 det the,TNFα
R4065 T6559 T6557 pobj TNFα,from
R4066 T6560 T6559 punct ",",TNFα
R4068 T6561 T6559 conj IL-8,TNFα
R4069 T6562 T6561 punct ",",IL-8
R4070 T6563 T6561 conj IL-6,IL-8
R4071 T6564 T6563 cc and,IL-6
R4073 T6565 T6563 conj IFNγ,IL-6
R4074 T6566 T6557 pobj promoters,from
R4075 T6567 T6571 punct ",",assumed
R4077 T6568 T6571 nsubjpass it,assumed
R4078 T6569 T6571 aux could,assumed
R4079 T6570 T6571 auxpass be,assumed
R4081 T6571 T6571 ROOT assumed,assumed
R4082 T6572 T6579 mark that,lead
R4083 T6573 T6574 compound GP,treatment
R4084 T6574 T6579 nsubj treatment,lead
R4086 T6575 T6574 prep of,treatment
R4087 T6576 T6577 compound human,PBMC
R4088 T6577 T6575 pobj PBMC,of
R4089 T6578 T6579 aux would,lead
R4090 T6579 T6571 ccomp lead,assumed
R4091 T6580 T6579 prep to,lead
R4092 T6581 T6580 pobj production,to
R4093 T6582 T6581 prep of,production
R4095 T6583 T6582 pobj TNFα,of
R4096 T6584 T6583 punct ",",TNFα
R4097 T6585 T6583 conj IL-8,TNFα
R4098 T6586 T6585 punct ",",IL-8
R4100 T6587 T6585 conj IL-6,IL-8
R4101 T6588 T6587 punct ",",IL-6
R4102 T6589 T6587 conj IFNγ,IL-6
R4104 T6590 T6589 cc and,IFNγ
R4105 T6591 T6593 amod other,mediators
R4106 T6592 T6593 amod pro-inflammatory,mediators
R4107 T6593 T6589 conj mediators,IFNγ
R4109 T6594 T6571 punct .,assumed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6224 165-175 Gene_expression denotes production
T6223 165-175 Gene_expression denotes production
T6222 165-175 Gene_expression denotes production
T6221 165-175 Gene_expression denotes production
T6220 197-201 Protein denotes IFNγ
T6219 191-195 Protein denotes IL-6
T6218 185-189 Protein denotes IL-8
T6217 179-183 Protein denotes TNFα
T6216 83-97 Protein denotes IFNγ promoters
T6215 74-78 Protein denotes IL-6
T6214 62-72 Protein denotes TNFα, IL-8
R3880 T6218 T6222 themeOf IL-8,production
R3882 T6219 T6223 themeOf IL-6,production
R3883 T6220 T6224 themeOf IFNγ,production
R3878 T6217 T6221 themeOf TNFα,production

testone

Id Subject Object Predicate Lexical cue
T4483 157-161 Positive_regulation denotes lead
T4417 197-201 Protein denotes IFNγ
T4416 191-195 Protein denotes IL-6
T4415 185-189 Protein denotes IL-8
T4414 179-183 Protein denotes TNFα
T4413 83-87 Protein denotes IFNγ
T4412 74-78 Protein denotes IL-6
T4411 68-72 Protein denotes IL-8
T4410 62-66 Protein denotes TNFα
T4484 165-175 Gene_expression denotes production
R2716 T4414 T4484 themeOf TNFα,production
R2717 T4415 T4484 themeOf IL-8,production
R2718 T4416 T4484 themeOf IL-6,production
R2719 T4417 T4484 themeOf IFNγ,production
R2767 T4484 T4483 themeOf production,lead

test3

Id Subject Object Predicate Lexical cue
T4614 197-201 Protein denotes IFNγ
T4613 191-195 Protein denotes IL-6
T4612 185-189 Protein denotes IL-8
T4611 179-183 Protein denotes TNFα
T4610 165-175 Gene_expression denotes production
T4609 157-161 Positive_regulation denotes lead
T4608 83-87 Protein denotes IFNγ
T4607 74-78 Protein denotes IL-6
T4606 68-72 Protein denotes IL-8
T4605 62-66 Protein denotes TNFα
T4538 197-201 Protein denotes IFNγ
T4537 191-195 Protein denotes IL-6
T4536 185-189 Protein denotes IL-8
T4535 179-183 Protein denotes TNFα
T4534 83-87 Protein denotes IFNγ
T4533 74-78 Protein denotes IL-6
T4532 68-72 Protein denotes IL-8
T4531 62-66 Protein denotes TNFα
R2792 T4610 T4609 themeOf production,lead
R2793 T4611 T4610 themeOf TNFα,production
R2794 T4612 T4610 themeOf IL-8,production
R2795 T4613 T4610 themeOf IL-6,production
R2796 T4614 T4610 themeOf IFNγ,production